Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 409 of 433
Found at i:126194835 original size:25 final size:25
Alignment explanation
Indices: 126194801--126194851 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
126194791 AAGGATATGC
126194801 AATCTTAGATAGGATATGCAATCTT
1 AATCTTAGATAGGATATGCAATCTT
*
126194826 AATCTTAGATATGATATGCAATCTT
1 AATCTTAGATAGGATATGCAATCTT
126194851 A
1 A
126194852 GATATGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (25 bp):
AATCTTAGATAGGATATGCAATCTT
Found at i:126202283 original size:84 final size:84
Alignment explanation
Indices: 126202142--126202519 Score: 562
Period size: 84 Copynumber: 4.5 Consensus size: 84
126202132 AATGAAGATT
* * * * * *
126202142 GATGCGCCTTAATCCCCTAAGTAGTAAGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGC
1 GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCCTAAGC
126202207 AGTAGTGGAGCAGATCGAA
66 AGTAGTGGAGCAGATCGAA
* *
126202226 GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTGCAAATCTTATCTCCCTAAGA
1 GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCCTAAGC
126202291 AGTAGTGGAGCAGATCGAA
66 AGTAGTGGAGCAGATCGAA
*
126202310 GATGCGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGC
1 GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCCTAAGC
*
126202374 AGTAGCGGAGCAGATCGAAAA
66 AGTAGTGGAGCAGATCG--AA
*
126202395 CGATGCGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAATTACAAATCTTATCTCCCTAAG
1 -GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCCTAAG
** *
126202460 CAGTAGTGGAGTGGATTGAA
65 CAGTAGTGGAGCAGATCGAA
* *
126202480 GACT-CGCCTTAACTCCCTAAGCAGTAGGGTAATAGGCTAA
1 GA-TGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAA
126202520 GATATAGCAG
Statistics
Matches: 272, Mismatches: 17, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
83 65 0.24
84 127 0.47
85 5 0.02
86 12 0.04
87 63 0.23
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (84 bp):
GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAAATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAA
Found at i:126202459 original size:170 final size:167
Alignment explanation
Indices: 126202142--126202538 Score: 589
Period size: 170 Copynumber: 2.3 Consensus size: 167
126202132 AATGAAGATT
* * * *
126202142 GATGCGCCTTAATCCCCTAAGTAGTAAGGTAACAGGTTAAAATTGCAGATCTTATCTCCCTAAGC
1 GATGCGCCTTAA-CCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGC
* *
126202207 AGTAGTGGAGCAGATCGAAGATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTGC
65 AGTAGCGGAGCAGATCGAAGATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTAC
126202272 AAATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAA
130 AAATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAA
126202310 GATGCGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCA
1 GATGCGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCA
*
126202375 GTAGCGGAGCAGATCGAAAACGATGCGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAATT
66 GTAGCGGAGCAGATCG--AA-GATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATT
* ** *
126202440 ACAAATCTTATCTCCCTAAGCAGTAGTGGAGTGGATTGAA
128 ACAAATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAA
* * *
126202480 GACT-CGCCTTAACTCCCTAAGCAGTAGGGTAATAGGCTAAGATATAGCAGATCTGATCT
1 GA-TGCGCCTTAAC-CCCTAAGCAGTAGGGTAACAGGCTAAAAT-TA-CAGATCTTATCT
126202539 TCAGATGTTT
Statistics
Matches: 208, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
167 64 0.31
168 12 0.06
169 2 0.01
170 89 0.43
171 28 0.13
172 2 0.01
173 11 0.05
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.23
Consensus pattern (167 bp):
GATGCGCCTTAACCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTATCTCCCTAAGCA
GTAGCGGAGCAGATCGAAGATGCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACA
AATCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAA
Found at i:126202680 original size:92 final size:91
Alignment explanation
Indices: 126202523--126202702 Score: 272
Period size: 92 Copynumber: 2.0 Consensus size: 91
126202513 AGGCTAAGAT
* *
126202523 ATAGCAGATCTGATCTTCAGATGTTTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCTCT
1 ATAGCAGATCTGACCTTCAGATGTTTACATCGAAGCAAATCCAAGATGACAGATTTGGCATCTCT
126202588 GTATTAGAC-GGGAAGCAGATCGAAAAC
66 GTATT-GACAGGG-AGCAGATCGAAAAC
* * * *
126202615 ATAGCAGATCTGACCTTCAGGTGTTTACATTGAAGCAAATCTAAGATGACAGATTTGGCGTCTCT
1 ATAGCAGATCTGACCTTCAGATGTTTACATCGAAGCAAATCCAAGATGACAGATTTGGCATCTCT
*
126202680 GTATTGTCAGGGAGCAGATCGAA
66 GTATTGACAGGGAGCAGATCGAA
126202703 GACAGTAGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
91 13 0.16
92 67 0.84
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (91 bp):
ATAGCAGATCTGACCTTCAGATGTTTACATCGAAGCAAATCCAAGATGACAGATTTGGCATCTCT
GTATTGACAGGGAGCAGATCGAAAAC
Found at i:126202757 original size:44 final size:44
Alignment explanation
Indices: 126202648--126202758 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 44
126202638 TTTACATTGA
* * * *
126202648 AGCAAATCTAAGATGACAGATTTGGCGTCTCTGTATTGTCAGGG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAG
* ** *
126202692 AGCAGATCGAAGACAGTAGATTTGGCGTCTCTGTATTGTTAGAG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAG
126202736 AGCAGATCGAAGATAACAGATTT
1 AGCAGATCGAAGATAACAGATTT
126202759 AGCATCTCCA
Statistics
Matches: 56, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (44 bp):
AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTGTCAGAG
Found at i:126202883 original size:88 final size:87
Alignment explanation
Indices: 126202780--126203016 Score: 251
Period size: 87 Copynumber: 2.7 Consensus size: 87
126202770 ATTCGATGGA
* * *
126202780 GAGCAAATCGAAGACATAGCAGATCTAACCTTC-GGATGTTTTACATCAAAGTAGATCCAAGATG
1 GAGCAAATCGAAGACATAGCAGATCTAACCTTCACG-TG-TTCACACCAAAGTAGATCCAAGATG
*
126202844 ATTTGGCAACTTTGCGTTTACAAG
64 ATTTGGCAACCTTGCGTTTACAAG
* * * * ** * * *
126202868 GAGCAGATCGAAGACATAGCTGGTTTGGCTTTCACGTGTTCACGCCGAAGTAGATCCAAGATGAT
1 GAGCAAATCGAAGACATAGCAGATCTAACCTTCACGTGTTCACACCAAAGTAGATCCAAGATGAT
*
126202933 TTGGCATCCTTGCGTTTACAAG
66 TTGGCAACCTTGCGTTTACAAG
* * ** * * **
126202955 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTCACGCTGAAGTAGATCCAAGAT
1 GAGCAAATCGAAGACATAGCAGATCTAACCTTCACGTGTTCACACCAAAGTAGATCCAAGAT
126203017 TTGGCGTCTC
Statistics
Matches: 131, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
87 102 0.78
88 28 0.21
89 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
GAGCAAATCGAAGACATAGCAGATCTAACCTTCACGTGTTCACACCAAAGTAGATCCAAGATGAT
TTGGCAACCTTGCGTTTACAAG
Found at i:126202933 original size:87 final size:87
Alignment explanation
Indices: 126202828--126203016 Score: 333
Period size: 87 Copynumber: 2.2 Consensus size: 87
126202818 TTTTACATCA
* * *
126202828 AAGTAGATCCAAGATGATTTGGCAACTTTGCGTTTACAAGGAGCAGATCGAAGACATAGCTGGTT
1 AAGTAGATCCAAGATGATTTGGCAACCTTGCGTTTACAAGGAGCAAATCGAAGACATAGCTGATT
126202893 TGGCTTTCACGTGTTCACGCCG
66 TGGCTTTCACGTGTTCACGCCG
*
126202915 AAGTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAAATCGAAGACATAGCTGATT
1 AAGTAGATCCAAGATGATTTGGCAACCTTGCGTTTACAAGGAGCAAATCGAAGACATAGCTGATT
*
126202980 TGGCTTTCACGTGTTCACGCTG
66 TGGCTTTCACGTGTTCACGCCG
126203002 AAGTAGATCCAAGAT
1 AAGTAGATCCAAGAT
126203017 TTGGCGTCTC
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 97 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.28
Consensus pattern (87 bp):
AAGTAGATCCAAGATGATTTGGCAACCTTGCGTTTACAAGGAGCAAATCGAAGACATAGCTGATT
TGGCTTTCACGTGTTCACGCCG
Found at i:126203479 original size:19 final size:19
Alignment explanation
Indices: 126203455--126203535 Score: 90
Period size: 19 Copynumber: 3.9 Consensus size: 19
126203445 ATAATCTTTA
126203455 AGGATATGCAATCTTAGAT
1 AGGATATGCAATCTTAGAT
126203474 AGGATATGCAATCTTAATCTTAGAT
1 AGGATATG----C--AATCTTAGAT
*
126203499 ATGATATGCAATCTTAGAT
1 AGGATATGCAATCTTAGAT
*
126203518 ATGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
126203536 AGATATGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
19 36 0.65
21 1 0.02
23 1 0.02
25 17 0.31
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (19 bp):
AGGATATGCAATCTTAGAT
Found at i:126203498 original size:25 final size:25
Alignment explanation
Indices: 126203464--126203514 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
126203454 AAGGATATGC
126203464 AATCTTAGATAGGATATGCAATCTT
1 AATCTTAGATAGGATATGCAATCTT
*
126203489 AATCTTAGATATGATATGCAATCTT
1 AATCTTAGATAGGATATGCAATCTT
126203514 A
1 A
126203515 GATATGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37
Consensus pattern (25 bp):
AATCTTAGATAGGATATGCAATCTT
Found at i:126205978 original size:24 final size:24
Alignment explanation
Indices: 126205915--126205966 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
126205905 TTTCTAGAAG
* * *
126205915 ATTTAGAATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
126205939 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
126205963 ATTT
1 ATTT
126205967 GGCTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.38, C:0.04, G:0.10, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:126206133 original size:12 final size:12
Alignment explanation
Indices: 126206116--126206141 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
126206106 TTGTGTGTTC
126206116 TTTATTTTATTT
1 TTTATTTTATTT
126206128 TTTATTTTATTT
1 TTTATTTTATTT
126206140 TT
1 TT
126206142 CATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:126210356 original size:24 final size:24
Alignment explanation
Indices: 126210293--126210344 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
126210283 TTTCAAGAAG
* * *
126210293 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
126210317 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
126210341 ATTT
1 ATTT
126210345 GGTTTTGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:126210511 original size:11 final size:11
Alignment explanation
Indices: 126210495--126210519 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
126210485 TTTTGTGTTC
126210495 TTTATTTTATT
1 TTTATTTTATT
126210506 TTTATTTTATT
1 TTTATTTTATT
126210517 TTT
1 TTT
126210520 CACAAGAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:126213788 original size:13 final size:14
Alignment explanation
Indices: 126213769--126213819 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
126213759 TGTATAAGTG
126213769 AAAATAATGTATTT
1 AAAATAATGTATTT
*
126213783 -AAATAATTAGAATTT
1 AAAATAA-T-GTATTT
*
126213798 AAAATAAAGTATTT
1 AAAATAATGTATTT
126213812 AAAATAAT
1 AAAATAAT
126213820 TTAATCATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 6 0.20
14 13 0.43
15 5 0.17
16 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (14 bp):
AAAATAATGTATTT
Found at i:126213831 original size:30 final size:29
Alignment explanation
Indices: 126213769--126213835 Score: 82
Period size: 30 Copynumber: 2.3 Consensus size: 29
126213759 TGTATAAGTG
* *
126213769 AAAATAATGTATTTAAATAATTAGAATTT
1 AAAATAAAGTATTTAAATAATTAGAATAT
*
126213798 AAAATAAAGTATTTAAAATAATT-TAATCAT
1 AAAATAAAGTATTT-AAATAATTAGAAT-AT
126213828 AAAATAAA
1 AAAATAAA
126213836 TTATAAGAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.58, C:0.01, G:0.04, T:0.36
Consensus pattern (29 bp):
AAAATAAAGTATTTAAATAATTAGAATAT
Found at i:126215058 original size:19 final size:17
Alignment explanation
Indices: 126215025--126215059 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
126215015 TTACTTTTGG
126215025 AAAAGAAAAAAAGAAAT
1 AAAAGAAAAAAAGAAAT
126215042 AAAATGAAAACAAAGAAA
1 AAAA-GAAAA-AAAGAAA
126215060 CTTTTAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 5 0.31
19 7 0.44
ACGTcount: A:0.80, C:0.03, G:0.11, T:0.06
Consensus pattern (17 bp):
AAAAGAAAAAAAGAAAT
Found at i:126215798 original size:45 final size:44
Alignment explanation
Indices: 126215728--126216294 Score: 177
Period size: 45 Copynumber: 12.7 Consensus size: 44
126215718 TGTAGCTTGA
* *
126215728 TCTGCTCTATTGCAACTTCAAGGAGATAAGATCCGTTATCTTCAG
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGAT-CGTTATCTTCAG
* * * *
126215773 TCTGCTCCATTGCAATTTCAGGGAGACAAGA-CTTGTAACTTCA-
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGATCGT-TATCTTCAG
* * * * **
126215816 ACTTG-TCCCATTGCAACTTCAGGGGGATAAGATTGATGGCTTC-G
1 TC-TGCT-CCATTGCAACTTCAGGGAGATAAGATCGTTATCTTCAG
* * * * ** *
126215860 ACCTGCTCCACTGTAACTTCAAGGAGATAAGATTCGCCATCTTCAA
1 -TCTGCTCCATTGCAACTTCAGGGAGATAAGA-TCGTTATCTTCAG
* * * *
126215906 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTTGTAACTTCAA
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGATCGT-TATCTTCAG
* * * * * * * *
126215950 CCTACTCTACTGCAACTTCAGGGAGATAAGGT--TTGT-TTTAA
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGATCGTTATCTTCAG
* * * * * * * *
126215991 TTTGCTCTACTGTAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAA
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGAT-CG----TTATCTTCAG
*** * * * *
126216040 TCCATTCCACTGCAACTTCAGGGAAATAAGATATGCTATCTTCAG
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGAT-CGTTATCTTCAG
* * * * * * *
126216085 TCTGCTCTACTGCAATTTCAGGGAGATAGGACTTGTGA-CTTCAA
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGA-TCGTTATCTTCAG
* ** * * ** * * * *
126216129 TCTACTCCGCTGAAACTTCAAGGAGATCTGGT--TTGTTTTGA-
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGATCGTTATCTTCAG
* * * * * *
126216170 TCTGCTCTACTGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAA
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGAT-CG----TTATCTTCAG
** * * *
126216219 TCTATTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAG
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGA-TCGTTATCTTCAG
* *
126216264 TCTGCTCCACTGCAACTCCAGGGAGATAAGA
1 TCTGCTCCATTGCAACTTCAGGGAGATAAGA
126216295 CTTGTGACTT
Statistics
Matches: 382, Mismatches: 110, Indels: 60
0.69 0.20 0.11
Matches are distributed among these distances:
41 54 0.14
42 4 0.01
43 7 0.02
44 120 0.31
45 130 0.34
46 1 0.00
48 7 0.02
49 58 0.15
50 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (44 bp):
TCTGCTCCATTGCAACTTCAGGGAGATAAGATCGTTATCTTCAG
Found at i:126215878 original size:44 final size:42
Alignment explanation
Indices: 126215729--126216294 Score: 212
Period size: 44 Copynumber: 12.7 Consensus size: 42
126215719 GTAGCTTGAT
* * * * **
126215729 CTGCTCTATTGCAACTTCAAGGAGATAAGATCCGTTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAT---TGATCTTCAAC
* * * *
126215774 CTGCTCCATTGCAATTTCAGGGAGACAAGACTTGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-ATCTTCAAC
* * * *
126215818 TTG-TCCCATTGCAACTTCAGGGGGATAAGATTGATGGCTTCGAC
1 CTGCT-CCACTGCAACTTCAGGGAGATAAGATTGAT--CTTCAAC
* * *
126215862 CTGCTCCACTGTAACTTCAAGGAGATAAGATTCGCCATCTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGATT-G--ATCTTCAAC
*
126215907 CTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAAC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG-ATCTTCAAC
* * * * *
126215951 CTACTCTACTGCAACTTCAGGGAGATAAGGTTTG-T-TTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAA-GATTGATCTTCAAC
* * * * * *
126215992 TTGCTCTACTGTAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATC
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAT---TGA--T--CTTCAA-C
* **
126216042 CAT--TCCACTGCAACTTCAGGGAAATAAGATATGCTATCTTCAGT
1 C-TGCTCCACTGCAACTTCAGGGAGATAAGAT-TG--ATCTTCAAC
* * * *
126216086 CTGCTCTACTGCAATTTCAGGGAGATAGGACTTG-TGACTTCAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGAT--CTTCAAC
* * * * ** * ** *
126216130 CTACTCCGCTGAAACTTCAAGGAGATCTGGTTTG-T-TTTGAT
1 CTGCTCCACTGCAACTTCAGGGAGAT-AAGATTGATCTTCAAC
* * * * *
126216171 CTGCTCTACTGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGAT---TGA--T--CTTCAAC
** **
126216220 CTATTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA-TTG--ATCTTCAAC
*
126216265 CTGCTCCACTGCAACTCCAGGGAGATAAGA
1 CTGCTCCACTGCAACTTCAGGGAGATAAGA
126216295 CTTGTGACTT
Statistics
Matches: 394, Mismatches: 85, Indels: 84
0.70 0.15 0.15
Matches are distributed among these distances:
40 4 0.01
41 52 0.13
42 2 0.01
43 8 0.02
44 128 0.32
45 125 0.32
46 6 0.02
47 6 0.02
49 61 0.15
50 1 0.00
51 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (42 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGATTGATCTTCAAC
Found at i:126215904 original size:89 final size:89
Alignment explanation
Indices: 126215827--126216334 Score: 336
Period size: 89 Copynumber: 5.7 Consensus size: 89
126215817 CTTGTCCCAT
* ** * * *
126215827 TGCAACTTCAGGGGGATAAGA-TTGATGGCTTCGACCTGCTCCACTGTAACTTCAAGGAGATAAG
1 TGCAACTTCAGGGAGATAAGACTTG-TAACTTCAACCTACTCCACTGCAACTTCAAGGAGATAAG
126215891 ATTCGCCATCTTCAATCTGCTCCAC
65 ATTCGCCATCTTCAATCTGCTCCAC
* * *
126215916 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCTACTGCAACTTCAGGGAGATAAGG
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAAGGAGATAAGA
* * * *
126215981 TTTG---T-TTTAATTTGCTCTAC
66 TTCGCCATCTTCAATCTGCTCCAC
* * * * * * * *
126216001 TGTAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCC-ATTCCACTGCAACTTCAGGGAA
1 TGCAACTTCAGGGAGATAAGA--C-T--TGTAACTTCAA-CCTACTCCACTGCAACTTCAAGGAG
* * *
126216065 ATAAGATAT-GCTATCTTCAGTCTGCTCTAC
60 ATAAGAT-TCGCCATCTTCAATCTGCTCCAC
* * * * * * ** *
126216095 TGCAATTTCAGGGAGATAGGACTTGTGACTTCAATCTACTCCGCTGAAACTTCAAGGAGATCTGG
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAAGGAGATAAGA
* ** *
126216160 TTTG---T-TTTGATCTGCTCTAC
66 TTCGCCATCTTCAATCTGCTCCAC
* * * * * * *
126216180 TGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCTATTCCACTGCAACTTCAGGGAGA
1 TGCAACTTCAGGGAGATAAGA--C-T--TGTAACTTCAACCTACTCCACTGCAACTTCAAGGAGA
* * *
126216245 TAAGATTTGCTATCTTCAGTCTGCTCCAC
61 TAAGATTCGCCATCTTCAATCTGCTCCAC
* * ** * * *
126216274 TGCAACTCCAGGGAGATAAGACTTGTGACTTCAATTTACTCCGCTGAAACTTCTAGGAGAT
1 TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAAGGAGAT
126216335 CTACTGTGGC
Statistics
Matches: 321, Mismatches: 75, Indels: 46
0.73 0.17 0.10
Matches are distributed among these distances:
85 61 0.19
86 2 0.01
87 2 0.01
88 4 0.01
89 112 0.35
90 72 0.22
91 5 0.02
92 2 0.01
93 2 0.01
94 59 0.18
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (89 bp):
TGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTACTCCACTGCAACTTCAAGGAGATAAGA
TTCGCCATCTTCAATCTGCTCCAC
Found at i:126216335 original size:179 final size:178
Alignment explanation
Indices: 126215866--126216336 Score: 708
Period size: 179 Copynumber: 2.6 Consensus size: 178
126215856 TTCGACCTGC
* * * * *
126215866 TCCACTGTAACTTCAAGGAGATAAGATTCGCCATCTTCAATCTGCTCCACTGCAACTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
* * ** * ** *
126215931 ATAAGACTTGTAACTTCAACCTACTCTACTGCAACTTCAGGGAGATAAGGTTTGTTTTAATTTGC
66 ATAAGACTTGTGACTTCAATCTACTCCGCTGAAACTTCA-GGAGATCTGGTTTGTTTTAATCTGC
*
126215996 TCTACTGTAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCCAT
130 TCTACTGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCCAT
* * * *
126216045 TCCACTGCAACTTCAGGGAAATAAGATATGCTATCTTCAGTCTGCTCTACTGCAATTTCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
* *
126216110 ATAGGACTTGTGACTTCAATCTACTCCGCTGAAACTTCAAGGAGATCTGGTTTGTTTTGATCTGC
66 ATAAGACTTGTGACTTCAATCTACTCCGCTGAAACTTC-AGGAGATCTGGTTTGTTTTAATCTGC
*
126216175 TCTACTGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCTAT
130 TCTACTGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCCAT
*
126216224 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTCCAGGGAG
1 TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
*
126216289 ATAAGACTTGTGACTTCAATTTACTCCGCTGAAACTTCTAGGAGATCT
66 ATAAGACTTGTGACTTCAATCTACTCCGCTGAAACTTC-AGGAGATCT
126216337 ACTGTGGCTT
Statistics
Matches: 262, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
179 261 1.00
180 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (178 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTGACTTCAATCTACTCCGCTGAAACTTCAGGAGATCTGGTTTGTTTTAATCTGCT
CTACTGCAACTTCAGAGAGATAAGATCCGTAATTTAGCTTTAATCCAT
Found at i:126216800 original size:44 final size:44
Alignment explanation
Indices: 126216660--126216860 Score: 133
Period size: 44 Copynumber: 4.6 Consensus size: 44
126216650 ATTCAGCCTA
* * ** * *
126216660 TTACCCTACTGCTTAGGGGTTTACGGCCCATCGCCTTTGATCTG
1 TTACCCTACTGCTTAGGGGTTTAAGACCCATCAACTTCGACCTG
* * * * ** *
126216704 TTTCCCTACTGATTAAGGAG-TTAAGATCTGT-AAATTC-AGCCTG
1 TTACCCTACTGCTT-AGGGGTTTAAGACCCATCAACTTCGA-CCTG
* *
126216747 TTACCCTACTGCTTAGGGGTTTAAGACCCATCGACTTCGATCTG
1 TTACCCTACTGCTTAGGGGTTTAAGACCCATCAACTTCGACCTG
* * * * * * *
126216791 TTTCCCTACTGCTAAGGAGG-TTAAGATCTATAAATTTAG-CCTG
1 TTACCCTACTGCTTAGG-GGTTTAAGACCCATCAACTTCGACCTG
*
126216834 TTACCCTACTACTTAGGGGTTTAAGAC
1 TTACCCTACTGCTTAGGGGTTTAAGAC
126216861 TTGTGAATTC
Statistics
Matches: 115, Mismatches: 35, Indels: 15
0.70 0.21 0.09
Matches are distributed among these distances:
42 7 0.06
43 48 0.42
44 53 0.46
45 7 0.06
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (44 bp):
TTACCCTACTGCTTAGGGGTTTAAGACCCATCAACTTCGACCTG
Found at i:126216858 original size:43 final size:43
Alignment explanation
Indices: 126216701--126216859 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
126216691 CGCCTTTGAT
* * * * *
126216701 CTGTTTCCCTACTGATTAAGGAG-TTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTTAAGATCTATAAATTTAGC
* * ** * * *
126216744 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGACTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGATCTATAAATTTAG-C
* *
126216788 CTGTTTCCCTACTGCTAAGGAGG-TTAAGATCTATAAATTTAGC
1 CTGTTACCCTACTGCTTAGG-GGTTTAAGATCTATAAATTTAGC
*
126216831 CTGTTACCCTACTACTTAGGGGTTTAAGA
1 CTGTTACCCTACTGCTTAGGGGTTTAAGA
126216860 CTTGTGAATT
Statistics
Matches: 88, Mismatches: 24, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
42 6 0.07
43 49 0.56
44 31 0.35
45 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (43 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGATCTATAAATTTAGC
Found at i:126216860 original size:87 final size:88
Alignment explanation
Indices: 126216377--126216858 Score: 582
Period size: 87 Copynumber: 5.5 Consensus size: 88
126216367 TCAGGGAGAA
* * * *
126216377 GAGATTTGTAATTTCCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCCCATCATCTTCGATCT
1 GAGATCTGTAAATT-CAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCT
*
126216442 GTTTCCTTACTGCTTAGG-GTGAT
65 GTTTCCCTACTGCTTAGGAGTGAT
* * ** * *
126216465 GAGATCTGTAAATTCAGCTTGTTGCCCTACTGCTTAGGGAATTAGGGCCCTTCACCTTCGATCTG
1 GAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTG
126216530 TTTCCCTACTGCTTAGG-GTGAT
66 TTTCCCTACTGCTTAGGAGTGAT
* * * * * * * *
126216552 GAGATTTCTAAATTTAACCTGTTATCCTACTGTTTAGGGGTTTAAGGCCCTTCACCTTCGATCTA
1 GAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTG
* *
126216617 TTTCCCTATTGTTTA-GAGTGAT
66 TTTCCCTACTGCTTAGGAGTGAT
* * * *
126216639 GAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGTTTACGGCCCATCGCCTTTGATCTG
1 GAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTG
*
126216704 TTTCCCTACTGATTAAGGAGT--T
66 TTTCCCTACTGCTT-AGGAGTGAT
* *
126216726 AAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGA-CTTCGATCT
1 GAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATC-ACCTTCGATCT
* *
126216790 GTTTCCCTACTGCTAAGGAG-GTT
65 GTTTCCCTACTGCTTAGGAGTGAT
* * * *
126216813 AAGATCTATAAATTTAGCCTGTTACCCTACTACTTAGGGGTTTAAG
1 GAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAG
126216859 ACTTGTGAAT
Statistics
Matches: 339, Mismatches: 49, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
86 6 0.02
87 316 0.93
88 13 0.04
89 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (88 bp):
GAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCACCTTCGATCTG
TTTCCCTACTGCTTAGGAGTGAT
Found at i:126224451 original size:21 final size:22
Alignment explanation
Indices: 126224419--126224464 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
126224409 TACAATATAA
*
126224419 AAATATATAAAA-GAATTAGTAT
1 AAATATATAAAATGAA-TAATAT
126224441 AAATA-ATAAAATGAATAATAT
1 AAATATATAAAATGAATAATAT
126224462 AAA
1 AAA
126224465 ACATAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (22 bp):
AAATATATAAAATGAATAATAT
Found at i:126224458 original size:16 final size:17
Alignment explanation
Indices: 126224439--126224563 Score: 64
Period size: 17 Copynumber: 7.1 Consensus size: 17
126224429 AAGAATTAGT
*
126224439 ATAA-ATAATAAAATGA
1 ATAATATAATAAAATAA
*
126224455 ATAATATAA-AACATAA
1 ATAATATAATAAAATAA
126224471 ATAATATAATAGATAATATA
1 ATAATATAATA-A-AATA-A
*
126224491 CGATATACATAATATATAATAA
1 --ATA-ATATAATA-A-AATAA
*
126224513 A-AA-ATAATATAATAA
1 ATAATATAATAAAATAA
*
126224528 GTAATATATATAAAA-AA
1 ATAATATA-ATAAAATAA
126224545 AT-ATATTAAATAAAATAA
1 ATAATA-T-AATAAAATAA
126224563 A
1 A
126224564 ATATAAATAT
Statistics
Matches: 86, Mismatches: 9, Indels: 26
0.71 0.07 0.21
Matches are distributed among these distances:
15 5 0.06
16 23 0.27
17 24 0.28
18 11 0.13
19 4 0.05
20 2 0.02
22 4 0.05
23 13 0.15
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (17 bp):
ATAATATAATAAAATAA
Found at i:126224521 original size:17 final size:17
Alignment explanation
Indices: 126224499--126224598 Score: 57
Period size: 15 Copynumber: 5.9 Consensus size: 17
126224489 TACGATATAC
126224499 ATAATATATAATAAAAA
1 ATAATATATAATAAAAA
**
126224516 AT-A-ATATAATAAGTA
1 ATAATATATAATAAAAA
126224531 AT-ATATATAA-AAAAA
1 ATAATATATAATAAAAA
* *
126224546 TATATTAAATAA-AATAAA
1 -ATAATATATAATAA-AAA
* *
126224564 ATATAAATATATATAGGAAA
1 ATA-ATATATA-ATA-AAAA
*
126224584 ATAATATATGATAAA
1 ATAATATATAATAAA
126224599 TAAACATTTT
Statistics
Matches: 62, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
15 16 0.26
16 9 0.15
17 14 0.23
18 10 0.16
19 6 0.10
20 7 0.11
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (17 bp):
ATAATATATAATAAAAA
Found at i:126224557 original size:45 final size:45
Alignment explanation
Indices: 126224469--126224569 Score: 111
Period size: 45 Copynumber: 2.2 Consensus size: 45
126224459 TATAAAACAT
* *
126224469 AAATAATATAATAGATAATATACGATATACATAATATATAATAAA
1 AAATAATATAATAGATAATATACGATATAAAAAATATATAATAAA
*
126224514 AAATAATATAATA-AGTAATATA-TATA-AAAAAATATATTAAATAAA
1 AAATAATATAATAGA-TAATATACGATATAAAAAATATA-T-AATAAA
126224559 ATAA-AATATAA
1 A-AATAATATAA
126224570 ATATATATAG
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
43 8 0.16
44 5 0.10
45 34 0.69
46 2 0.04
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (45 bp):
AAATAATATAATAGATAATATACGATATAAAAAATATATAATAAA
Found at i:126224568 original size:31 final size:31
Alignment explanation
Indices: 126224501--126224572 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
126224491 CGATATACAT
*
126224501 AATATATAATAAAAAATAATATAATAAGTAA
1 AATATATAATAAAAAATAATATAATAAATAA
* *
126224532 TATATATAA-AAAAATATATTA-AATAAAATAA
1 AATATATAATAAAAA-ATAATATAAT-AAATAA
126224563 AATATA-AATA
1 AATATATAATA
126224573 TATATAGGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 10 0.29
31 24 0.71
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.31
Consensus pattern (31 bp):
AATATATAATAAAAAATAATATAATAAATAA
Found at i:126224653 original size:26 final size:25
Alignment explanation
Indices: 126224605--126224658 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 25
126224595 TAAATAAACA
126224605 TTTTATATAAAATATATCAATAGTAT
1 TTTTATATAAAATATATCAATAG-AT
126224631 TTTTA-ATAATAATATATGC-ATAGAT
1 TTTTATATAA-AATATAT-CAATAGAT
126224656 TTT
1 TTT
126224659 AAAATGAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 9 0.35
26 16 0.62
27 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.48
Consensus pattern (25 bp):
TTTTATATAAAATATATCAATAGAT
Found at i:126224658 original size:24 final size:25
Alignment explanation
Indices: 126224604--126224668 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
126224594 ATAAATAAAC
126224604 ATTTTATATAA-AATATATCAATAGT
1 ATTTTA-ATAATAATATATCAATAGT
126224629 ATTTTTAATAATAATATATGC-ATAG-
1 A-TTTTAATAATAATATAT-CAATAGT
126224654 ATTTTAA-AATGAATA
1 ATTTTAATAAT-AATA
126224669 AATTATATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
23 3 0.08
24 10 0.28
25 6 0.17
26 16 0.44
27 1 0.03
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.43
Consensus pattern (25 bp):
ATTTTAATAATAATATATCAATAGT
Found at i:126224765 original size:23 final size:23
Alignment explanation
Indices: 126224739--126224785 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
126224729 AAATGAAACT
* *
126224739 ATAAGGCTAATTTAAAAAATGAA
1 ATAAAGCTAATTTAAAAAAAGAA
**
126224762 ATAAATTTAATTTAAAAAAAGAA
1 ATAAAGCTAATTTAAAAAAAGAA
126224785 A
1 A
126224786 AAAAACTGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.62, C:0.02, G:0.09, T:0.28
Consensus pattern (23 bp):
ATAAAGCTAATTTAAAAAAAGAA
Found at i:126226077 original size:41 final size:40
Alignment explanation
Indices: 126226032--126226165 Score: 101
Period size: 41 Copynumber: 3.1 Consensus size: 40
126226022 CTCTCCGTCG
126226032 AACACAGATATGCCAAATCATCTTAGATTTGCTTCAACGTA
1 AACACAGA-ATGCCAAATCATCTTAGATTTGCTTCAACGTA
* * * * *
126226073 AACACGTGAAAGCCAAATCAGCTATGTCTTCGATCTGCTCTC--CGTCG
1 AACAC-AGAATGCCAAAT---C-A--TCTTAGATTTGCT-TCAACGT-A
*
126226120 AACACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTA
1 AACACAGA-ATGCCAAATCATCTTAGATTTGCTTCAACGTA
126226161 AACAC
1 AACAC
126226166 GTGAAAGTCA
Statistics
Matches: 70, Mismatches: 11, Indels: 24
0.67 0.10 0.23
Matches are distributed among these distances:
40 2 0.03
41 29 0.41
42 5 0.07
43 1 0.01
44 2 0.03
45 1 0.01
46 4 0.06
47 24 0.34
48 2 0.03
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (40 bp):
AACACAGAATGCCAAATCATCTTAGATTTGCTTCAACGTA
Found at i:126226160 original size:88 final size:88
Alignment explanation
Indices: 126226011--126226209 Score: 326
Period size: 88 Copynumber: 2.3 Consensus size: 88
126226001 CATGTCGATA
* * *
126226011 TCTTCGATCGGCTCTCCGTCGAACACAGATATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCCGTCGAACACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
*
126226076 ACGTGAAAGCCAAATCAGCTATG
66 ACGTGAAAGCCAAATCAGCTACG
126226099 TCTTCGATCTGCTCTCCGTCGAACACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCTCCGTCGAACACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
* * *
126226164 ACGTGAAAGTCAAATCTGTTACG
66 ACGTGAAAGCCAAATCAGCTACG
*
126226187 TCTTCGATCTGCTCCCCGTCGAA
1 TCTTCGATCTGCTCTCCGTCGAA
126226210 TATAGAGAGA
Statistics
Matches: 103, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 103 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTGCTCTCCGTCGAACACAAAGATGCCAAATCATCTTAGATTTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTACG
Found at i:126226178 original size:41 final size:41
Alignment explanation
Indices: 126226045--126226179 Score: 100
Period size: 41 Copynumber: 3.1 Consensus size: 41
126226035 ACAGATATGC
*
126226045 CAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGC
1 CAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGT
* * *
126226086 CAAATCAGCTATGTCTTCGATCTGCTCTC--CGTCGAACAC---AAAGAT
1 CAAAT---C-A--TCTTAGATTTGCT-TCAACGT-AAACACGTGAAAG-T
126226131 GCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGT
1 --CAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGT
126226174 CAAATC
1 CAAATC
126226180 TGTTACGTCT
Statistics
Matches: 71, Mismatches: 7, Indels: 32
0.65 0.06 0.29
Matches are distributed among these distances:
40 2 0.03
41 27 0.38
42 3 0.04
43 2 0.03
44 10 0.14
45 1 0.01
46 3 0.04
47 21 0.30
48 2 0.03
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (41 bp):
CAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAAGT
Found at i:126226247 original size:45 final size:45
Alignment explanation
Indices: 126226187--126226831 Score: 369
Period size: 45 Copynumber: 15.1 Consensus size: 45
126226177 ATCTGTTACG
* *
126226187 TCTTCGATCTGCTCCCCGTCGAATATAGAGAGATAAGATCTGTCA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* * * *
126226232 TCTTGGATCTACT-CCCGTCTATTACGGAGAGATAAGATCTGTCA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* * *
126226276 TCTTGGATCTACTCCTCGTC-AATTACAAAGAGATAAGATCTGTCA
1 TCTTGGATCTGCTCCCCGTCGAA-TACAGAGAGATAAGATCTGTCA
* * * *
126226321 TCTTGGATCTGTTCCCCGCCTATTACAGAGAGATAAGATCTGTCA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* * * * *
126226366 TCTTGGATCTGCT-CCCGCCTATTTCAGAGAGATAAGATATGTCA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* *
126226410 TCTTGGATCTG---CCC--CG-AT---GA-AGGTCAGATCTG-CTA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC-A
* * *
126226445 TGTCTTTGATCTGCTCCCCATTGAATACAGAGAGATAAGATCTGTCA
1 --TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* * * * **
126226492 TCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATC-CACTA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC-A
* * *
126226537 TCTTGGATCTG---CCC--CG-AT---GA-AGGTCAGATCT-ACTA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC-A
* **
126226572 TGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATC-CACTA
1 --TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC-A
* * * *
126226619 TCTTGGA--T-CTACCC-T-G-AT---GA-AGGTCAGATCTGCTACG
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTG-T-CA
* * *
126226656 TCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAAATCTGTCA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* * ***
126226701 TCTTGGATCTGCTCCCCGTCTATTACAGAGAGATAAGATCCACCA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* *
126226746 TCTTGGATCTG----CC-TCG-AT---GA-AGGTCAGATCTG-CTA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC-A
* *
126226781 TGTCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAGATCTGTCA
1 --TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
126226828 TCTT
1 TCTT
126226832 CAACTTGTTC
Statistics
Matches: 465, Mismatches: 76, Indels: 118
0.71 0.12 0.18
Matches are distributed among these distances:
34 2 0.00
35 39 0.08
36 8 0.02
37 36 0.08
38 1 0.00
39 6 0.01
40 16 0.03
41 6 0.01
42 16 0.03
43 9 0.02
44 82 0.18
45 189 0.41
46 10 0.02
47 43 0.09
48 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
Found at i:126226559 original size:127 final size:126
Alignment explanation
Indices: 126226167--126226630 Score: 526
Period size: 127 Copynumber: 3.6 Consensus size: 126
126226157 CGTAAACACG
* * * * * *
126226167 TGAAAGTCAAATCTGTTACGTCTTCGATCTGCTCCCCGTCGAATATAGAGAGATAAGATCTGTCA
1 TGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
* * * *
126226232 TCTTGGATCTACTCCCGTCTATTACGGAGAGATAAGATCTGTCATCTTGGATCTACTCCTCGTCA
66 TCTTGGATCTACTCCCGCCTATTACAGAGAGATAAGATCAGTCATCTTGGATCTGC-CC-CG---
126226297 A
126 A
* * * * * * *
126226298 TTACAAAGAGATAAGATCTG-TCA--TCTTGGATCTGTTCCCCGCCTATTACAGAGAGATAAGAT
1 -T--GAAG-G-TCAGATCTGCT-ATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGAT
* *
126226360 CTGTCATCTTGGATCTGCTCCCGCCTATTTCAGAGAGATAAGAT-ATGTCATCTTGGATCTGCCC
60 CTGTCATCTTGGATCTACTCCCGCCTATTACAGAGAGATAAGATCA-GTCATCTTGGATCTGCCC
126226424 CGA
124 CGA
* *
126226427 TGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCATTGAATACAGAGAGATAAGATCTGTCA
1 TGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
*
126226492 TCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCACT-ATCTTGGATCTGCCCCGA
66 TCTTGGATCTACT-CCCGCCTATTACAGAGAGATAAGAT-CAGTCATCTTGGATCTGCCCCGA
* **
126226554 TGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATC-CACT
1 TGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTC-
126226618 ATCTTGGATCTAC
65 ATCTTGGATCTAC
126226631 CCTGATGAAG
Statistics
Matches: 286, Mismatches: 33, Indels: 31
0.82 0.09 0.09
Matches are distributed among these distances:
124 9 0.03
125 2 0.01
126 54 0.19
127 112 0.39
128 2 0.01
129 2 0.01
132 3 0.01
133 2 0.01
134 90 0.31
135 2 0.01
136 8 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (126 bp):
TGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCTGTCA
TCTTGGATCTACTCCCGCCTATTACAGAGAGATAAGATCAGTCATCTTGGATCTGCCCCGA
Found at i:126226666 original size:209 final size:209
Alignment explanation
Indices: 126226409--126226822 Score: 711
Period size: 209 Copynumber: 2.0 Consensus size: 209
126226399 AAGATATGTC
* * **
126226409 ATCTTGGATCTGCCCCGATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCATTGAATACA
1 ATCTTGGATCTACCCCGATGAAGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCATCAAATACA
* *
126226474 GAGAGATAAGATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCACTATC
66 GAGAGATAAAATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCACCATC
*
126226539 TTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCGTCGAATACAGAG
131 TTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCGTCAAATACAGAG
126226604 AGATAAGATCCACT
196 AGATAAGATCCACT
* *
126226618 ATCTTGGATCTACCCTGATGAAGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCGTCAAATACA
1 ATCTTGGATCTACCCCGATGAAGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCATCAAATACA
* *
126226683 GAGAGATAAAATCTGTCATCTTGGATCTGCTCCCCGTCTATTACAGAGAGATAAGATCCACCATC
66 GAGAGATAAAATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCACCATC
* *
126226748 TTGGATCTGCCTCGATGAAGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCAAATACAGAG
131 TTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCGTCAAATACAGAG
126226813 AGATAAGATC
196 AGATAAGATC
126226823 TGTCATCTTC
Statistics
Matches: 192, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
209 192 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (209 bp):
ATCTTGGATCTACCCCGATGAAGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCATCAAATACA
GAGAGATAAAATCTGTCATCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCACCATC
TTGGATCTGCCCCGATGAAGGTCAGATCTACTATGTCTTTGATCTGCTCCCCGTCAAATACAGAG
AGATAAGATCCACT
Found at i:126226710 original size:82 final size:82
Alignment explanation
Indices: 126226492--126226691 Score: 310
Period size: 82 Copynumber: 2.4 Consensus size: 82
126226482 AGATCTGTCA
* * * * * *
126226492 TCTTGGATCTACTCCCCGCCTATTACAGAGAGATAAGATCCACTATCTTGGATCTGCCCCGATGA
1 TCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAGATCCACTATCTTGGATCTACCCCGATGA
*
126226557 AGGTCAGATCTACTATG
66 AGGTCAGATCTACTACG
* *
126226574 TCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCCACTATCTTGGATCTACCCTGATGA
1 TCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAGATCCACTATCTTGGATCTACCCCGATGA
*
126226639 AGGTCAGATCTGCTACG
66 AGGTCAGATCTACTACG
126226656 TCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAA
1 TCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAA
126226692 AATCTGTCAT
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 108 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (82 bp):
TCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAGATCCACTATCTTGGATCTACCCCGATGA
AGGTCAGATCTACTACG
Found at i:126226710 original size:127 final size:127
Alignment explanation
Indices: 126226574--126226831 Score: 437
Period size: 127 Copynumber: 2.0 Consensus size: 127
126226564 ATCTACTATG
* *
126226574 TCTTTGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCCACTATCTTGGATCTACCCT-GATG
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCCACCATCTTGGATCT-CCCTCGATG
126226638 AAGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAAATCTGTCA
65 AAGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAAATCTGTCA
* * *
126226701 TCTTGGATCTGCTCCCCGTCTATTACAGAGAGATAAGATCCACCATCTTGGATCTGCCTCGATGA
1 TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCCACCATCTTGGATCTCCCTCGATGA
* *
126226766 AGGTCAGATCTGCTATGTCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAGATCTGTCA
66 AGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAAATCTGTCA
126226828 TCTT
1 TCTT
126226832 CAACTTGTTC
Statistics
Matches: 123, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
126 3 0.02
127 120 0.98
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.29
Consensus pattern (127 bp):
TCTTGGATCTGCTCCCCGTCGAATACAGAGAGATAAGATCCACCATCTTGGATCTCCCTCGATGA
AGGTCAGATCTGCTACGTCTTTGATCTGCTCCCCGTCAAATACAGAGAGATAAAATCTGTCA
Found at i:126233896 original size:22 final size:22
Alignment explanation
Indices: 126233868--126233930 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
126233858 TAAAAAATAT
126233868 ATAAAAGAATTAGTATAAAAAA
1 ATAAAAGAATTAGTATAAAAAA
*
126233890 ATAAAAGAATTAGTAT-AAATA
1 ATAAAAGAATTAGTATAAAAAA
*
126233911 ATAAAATGAA-TAATATAAAA
1 ATAAAA-GAATTAGTATAAAA
126233931 CATAAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.41
22 22 0.59
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (22 bp):
ATAAAAGAATTAGTATAAAAAA
Found at i:126233935 original size:21 final size:20
Alignment explanation
Indices: 126233868--126233936 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 20
126233858 TAAAAAATAT
126233868 ATAAAAGAATTAGTATAAAAAA
1 ATAAAAGAATTAGTAT--AAAA
126233890 ATAAAAGAATTAGTATAAATA
1 ATAAAAGAATTAGTATAAA-A
*
126233911 ATAAAATGAA-TAATATAAAA
1 ATAAAA-GAATTAGTATAAAA
126233931 CATAAA
1 -ATAAA
126233937 TAATATAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
20 4 0.09
21 20 0.47
22 19 0.44
ACGTcount: A:0.67, C:0.01, G:0.07, T:0.25
Consensus pattern (20 bp):
ATAAAAGAATTAGTATAAAA
Found at i:126233951 original size:16 final size:15
Alignment explanation
Indices: 126233919--126234032 Score: 80
Period size: 16 Copynumber: 7.7 Consensus size: 15
126233909 TAATAAAATG
*
126233919 AATAATATAAAACATA
1 AATAATATAATA-ATA
126233935 AATAATATAATAGATA
1 AATAATATAATA-ATA
**
126233951 ATATACGAT-ATACAT-
1 A-ATAATATAATA-ATA
126233966 AAT-ATATAATAA-A
1 AATAATATAATAATA
*
126233979 AATAATATAATAAGA
1 AATAATATAATAATA
126233994 AATATATATAATAA-A
1 AATA-ATATAATAATA
*
126234009 TATAATA-AATAA-A
1 AATAATATAATAATA
126234022 ATATAATATAA
1 A-ATAATATAA
126234033 ATATATATAG
Statistics
Matches: 81, Mismatches: 9, Indels: 17
0.76 0.08 0.16
Matches are distributed among these distances:
13 12 0.15
14 23 0.28
15 12 0.15
16 29 0.36
17 5 0.06
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATATAATAATA
Found at i:126233988 original size:14 final size:14
Alignment explanation
Indices: 126233969--126234032 Score: 85
Period size: 14 Copynumber: 4.4 Consensus size: 14
126233959 TATACATAAT
126233969 ATATAATAAAAATA
1 ATATAATAAAAATA
126233983 ATATAATAAGAAATA
1 ATATAATAA-AAATA
*
126233998 TATATAATAAATATA
1 -ATATAATAAAAATA
126234013 ATA-AATAAAATATA
1 ATATAATAAAA-ATA
126234027 ATATAA
1 ATATAA
126234033 ATATATATAG
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
13 6 0.14
14 18 0.41
15 11 0.25
16 9 0.20
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (14 bp):
ATATAATAAAAATA
Found at i:126234001 original size:30 final size:27
Alignment explanation
Indices: 126233967--126234032 Score: 87
Period size: 30 Copynumber: 2.3 Consensus size: 27
126233957 GATATACATA
126233967 ATATATAATAAAAATAATATAATAAGAAAT
1 ATATATAATAAAAATAATA-AAT-A-AAAT
*
126233997 ATATATAATAAATATAATAAATAAAAT
1 ATATATAATAAAAATAATAAATAAAAT
126234024 ATAATATAA
1 AT-ATATAA
126234033 ATATATATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 6 0.18
28 7 0.21
29 3 0.09
30 18 0.53
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (27 bp):
ATATATAATAAAAATAATAAATAAAAT
Found at i:126234028 original size:44 final size:42
Alignment explanation
Indices: 126233920--126234041 Score: 123
Period size: 44 Copynumber: 3.0 Consensus size: 42
126233910 AATAAAATGA
* * *
126233920 ATAATATAAAACATAAATAATATAATAGATAATATACGATATAC
1 ATAATATATAATAAAAATAATATAATAGATAATATA--ATATAC
126233964 ATAATATATAATAAAAATAATATAATAAGA-AATAT-ATATA-
1 ATAATATATAATAAAAATAATATAAT-AGATAATATAATATAC
*
126234004 ATAA-ATATAATAAATAA-AATATAATATA-AATAT-ATATA
1 ATAATATATAATAAA-AATAATATAATAGATAATATAATATA
126234042 GGAAAATAAT
Statistics
Matches: 72, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
38 12 0.17
39 18 0.25
40 6 0.08
41 5 0.07
44 28 0.39
45 3 0.04
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (42 bp):
ATAATATATAATAAAAATAATATAATAGATAATATAATATAC
Found at i:126234048 original size:25 final size:25
Alignment explanation
Indices: 126233969--126234049 Score: 76
Period size: 25 Copynumber: 3.1 Consensus size: 25
126233959 TATACATAAT
*
126233969 ATATAATAAAAATAATATAATAAG-AA
1 ATATAATATAAAT-ATAT-ATAAGAAA
*
126233995 ATATATATAATAAATATA-ATAAATAAA
1 ATATA-AT-ATAAATATATAT-AAGAAA
*
126234022 ATATAATATAAATATATATAGGAAA
1 ATATAATATAAATATATATAAGAAA
126234047 ATA
1 ATA
126234050 ATATGTGATA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
25 18 0.39
26 11 0.24
27 12 0.26
28 5 0.11
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (25 bp):
ATATAATATAAATATATATAAGAAA
Found at i:126234049 original size:39 final size:39
Alignment explanation
Indices: 126233934--126234041 Score: 123
Period size: 39 Copynumber: 2.7 Consensus size: 39
126233924 TATAAAACAT
126233934 AAATAATATAAT-AGATAATATACGATATACATAATATATAATAA
1 AAATAATATAATAAGA-AATAT---ATATA-ATAA-ATATAATAA
126233978 AAATAATATAATAAGAAATATATATAATAAATATAATAA
1 AAATAATATAATAAGAAATATATATAATAAATATAATAA
*
126234017 ATAA-AATATAAT-ATAAATATATATA
1 A-AATAATATAATAAGAAATATATATA
126234042 GGAAAATAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 10
0.85 0.01 0.14
Matches are distributed among these distances:
38 12 0.20
39 18 0.30
40 6 0.10
41 5 0.08
44 17 0.28
45 3 0.05
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (39 bp):
AAATAATATAATAAGAAATATATATAATAAATATAATAA
Found at i:126236119 original size:28 final size:28
Alignment explanation
Indices: 126236073--126236141 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
126236063 TTTAAAACCC
*
126236073 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
126236100 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
126236128 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
126236142 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:126237792 original size:20 final size:20
Alignment explanation
Indices: 126237769--126237806 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
126237759 CACATCCAAA
*
126237769 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
126237789 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
126237807 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:126241584 original size:22 final size:21
Alignment explanation
Indices: 126241554--126241600 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
126241544 TACAAATTAA
126241554 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
126241576 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
126241597 ATCT
1 ATCT
126241601 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:126241606 original size:19 final size:18
Alignment explanation
Indices: 126241571--126241626 Score: 78
Period size: 17 Copynumber: 3.0 Consensus size: 18
126241561 AGATTACAAG
126241571 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGC-T
126241592 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCT
126241609 ATCATATCTAAGATTGCT
1 ATCATATCTAAGATTGCT
126241627 TATCCTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 17 0.50
18 1 0.03
19 7 0.21
20 1 0.03
21 8 0.24
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (18 bp):
ATCATATCTAAGATTGCT
Found at i:126242199 original size:22 final size:21
Alignment explanation
Indices: 126242169--126242215 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
126242159 TACAAATTAA
126242169 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
126242191 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
126242212 ATCT
1 ATCT
126242216 AAGACTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:126242247 original size:19 final size:19
Alignment explanation
Indices: 126242186--126242264 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
126242176 AGATTACAAG
126242186 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
126242207 ATCATATCTAAGACTG--T
1 ATCATATCTAAGATTGCAT
126242224 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
126242243 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
126242262 ATC
1 ATC
126242265 CTTAAAGATT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.30
19 29 0.54
20 1 0.02
21 8 0.15
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:126243089 original size:177 final size:175
Alignment explanation
Indices: 126242708--126243166 Score: 738
Period size: 177 Copynumber: 2.6 Consensus size: 175
126242698 ATAAACACGT
* * * *
126242708 GAAAGCCAAATCTGCTATGTCTTCGATTTGTTACTTGGAAACACAAGGATGCCAAATCATCTTGG
1 GAAAGTCAGATCTGCTATGTCTTCGATTTGTT-CTTGTAAACACAAGAATGCCAAATCATCTTGG
* *
126242773 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTATCCGTCGAATATGGA
65 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATATGCTATCCGTCGAATATGGA
* *
126242838 GACGCCAGATCTATTATCTTGGATCTGCTTTGATGTGAAAACATCT
130 GACGCCAGATCTATTATCTTGGATCTGATTTGATGTGAAAACATCC
*
126242884 GAAAGTCAGATCTGCTATGTCTTCGATTTGCTCTTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAGATCTGCTATGTCTTCGATTTGTTC-TTGTAAACACAAGAATGCCAAATCATCTTGG
* * *
126242949 ATCTGCTTCAGTAAAAACATCTGAAGGTTAGATCTGCTATGTATATGCTCTCCGTTTGAATATGG
65 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATATGCTATCCG-TCGAATATGG
* * * *
126243014 AGATGTCAGATCTGTTATCTTGGATCTGATTTGATGTGAGAACATCC
129 AGACGCCAGATCTATTATCTTGGATCTGATTTGATGTGAAAACATCC
126243061 GAAAGTCAGATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCCAAATCATCTTGG
1 GAAAGTCAGATCTGCTATGTCTTCGATTTGTT-CTTGTAAACACAAGAATGCCAAATCATCTTGG
126243126 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATG
65 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATG
126243167 CTTTAGCCTG
Statistics
Matches: 262, Mismatches: 18, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
175 1 0.00
176 108 0.41
177 152 0.58
178 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (175 bp):
GAAAGTCAGATCTGCTATGTCTTCGATTTGTTCTTGTAAACACAAGAATGCCAAATCATCTTGGA
TCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATATGCTATCCGTCGAATATGGAG
ACGCCAGATCTATTATCTTGGATCTGATTTGATGTGAAAACATCC
Found at i:126243309 original size:41 final size:41
Alignment explanation
Indices: 126243256--126243401 Score: 140
Period size: 41 Copynumber: 3.5 Consensus size: 41
126243246 ATCTGTGAAC
126243256 CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCTTCGAT
* * *
126243297 CTGTT-CCACTACTGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AAC
1 CTGTTACC-CTACTGCTTAGGG-GATTAAG----GCAAGTCTTCGAT
*
126243340 CTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCTTCGAT
* *
126243381 CTGCT-CCACTATTGCTTAGGG
1 CTGTTACC-CTACTGCTTAGGG
126243402 AGATAAGATC
Statistics
Matches: 85, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
39 4 0.05
40 6 0.07
41 39 0.46
42 4 0.05
43 23 0.27
44 4 0.05
45 5 0.06
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (41 bp):
CTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCTTCGAT
Found at i:126243355 original size:43 final size:43
Alignment explanation
Indices: 126243230--126243444 Score: 122
Period size: 41 Copynumber: 5.2 Consensus size: 43
126243220 GCTCCACTAT
*
126243230 TGCTTAGGGAGATAAGATCTG-----TGAACCTGTTACCCTAC
1 TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTAC
* * *
126243268 TGCTTAGGG-GATTAAG----GCAAGTCTTCGATCTGTT-CCACTAC
1 TGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-CTAC
126243309 TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTAC
1 TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTAC
* * * * * *
126243352 TGCTTAGGG-GATTAAG----GCGAGTCTTCGATCTGCT-CCACTAT
1 TGCTTAGGGAGA-TAAGATCTGCAAAT-TT-AACCTGTTACC-CTAC
* * *
126243393 TGCTTAGGGAGATAAGATCTGTAAATTTAACCTATCACCCTAC
1 TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTAC
126243436 TGCTTAGGG
1 TGCTTAGGG
126243445 GATTAAGGCG
Statistics
Matches: 131, Mismatches: 21, Indels: 45
0.66 0.11 0.23
Matches are distributed among these distances:
34 1 0.01
37 2 0.02
38 13 0.10
39 4 0.03
40 7 0.05
41 44 0.34
42 6 0.05
43 38 0.29
44 8 0.06
45 8 0.06
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.31
Consensus pattern (43 bp):
TGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTAC
Found at i:126243375 original size:84 final size:83
Alignment explanation
Indices: 126243168--126243454 Score: 420
Period size: 84 Copynumber: 3.4 Consensus size: 83
126243158 TCTGCTATGC
* * *
126243168 TTTAGCCTGTTACCCTACTGTTTAGGGGATTAAGGCGGGTCTTCGTCGATCTGCTCCACTATTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTATTGC
126243233 TTAGGGAGATAAGATCTG---
63 TTAGGGAGATAAGATCTGAAA
* * * *
126243251 -TGAACCTGTTACCCTACTGCTTAGGGGATTAAGGCAAGTCTTCGATCTGTTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTA
126243315 GGGAGATAAGATCTGCAAA
66 GGGAGATAAGATCTG-AAA
126243334 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTA
126243399 GGGAGATAAGATCTGTAAA
66 GGGAGATAAGATCTG-AAA
* *
126243418 TTTAACCTATCACCCTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
126243455 CTGAATTTTG
Statistics
Matches: 185, Mismatches: 14, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
79 36 0.19
81 1 0.01
82 35 0.19
84 113 0.61
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (83 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTATTGCTTA
GGGAGATAAGATCTGAAA
Found at i:126244405 original size:1 final size:1
Alignment explanation
Indices: 126244399--126244438 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
126244389 GGCCTCTCCA
* * *
126244399 TTTTTTTTTTCTCTTTTTTTTTCTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
126244439 GAAATAGAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (1 bp):
T
Found at i:126244417 original size:12 final size:11
Alignment explanation
Indices: 126244399--126244438 Score: 64
Period size: 12 Copynumber: 3.6 Consensus size: 11
126244389 GGCCTCTCCA
126244399 TTTTTTTTTTC
1 TTTTTTTTTTC
126244410 TCTTTTTTTTTC
1 T-TTTTTTTTTC
126244422 TTTTTTTTTT-
1 TTTTTTTTTTC
126244432 TTTTTTT
1 TTTTTTT
126244439 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 7 0.25
11 10 0.36
12 11 0.39
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:126250066 original size:22 final size:21
Alignment explanation
Indices: 126250036--126250082 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
126250026 TACAAATTAA
126250036 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
126250058 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
126250079 ATCT
1 ATCT
126250083 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:126250088 original size:19 final size:18
Alignment explanation
Indices: 126250053--126250108 Score: 78
Period size: 17 Copynumber: 3.0 Consensus size: 18
126250043 AGATTACAAG
126250053 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGC-T
126250074 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCT
126250091 ATCATATCTAAGATTGCT
1 ATCATATCTAAGATTGCT
126250109 TATCCTTAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
17 17 0.50
18 1 0.03
19 7 0.21
20 1 0.03
21 8 0.24
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (18 bp):
ATCATATCTAAGATTGCT
Found at i:126250673 original size:31 final size:31
Alignment explanation
Indices: 126250618--126250676 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
126250608 TTAGTCACTA
*
126250618 ACATTTTAGATAATTACTATTTTGGTCATTC
1 ACATTTTAGATAATTACTAATTTGGTCATTC
* **
126250649 ACATTTTAGATAGTTTTTAATTTGGTCA
1 ACATTTTAGATAATTACTAATTTGGTCA
126250677 CTCTCTATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.49
Consensus pattern (31 bp):
ACATTTTAGATAATTACTAATTTGGTCATTC
Found at i:126255295 original size:17 final size:17
Alignment explanation
Indices: 126255275--126255307 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
126255265 TAATGTAGAC
126255275 TTGTTAGATGAAGATTT
1 TTGTTAGATGAAGATTT
126255292 TTGTTAGATGAAGATT
1 TTGTTAGATGAAGATT
126255308 ATTATGGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.45
Consensus pattern (17 bp):
TTGTTAGATGAAGATTT
Found at i:126258383 original size:3 final size:3
Alignment explanation
Indices: 126258369--126258429 Score: 61
Period size: 3 Copynumber: 20.0 Consensus size: 3
126258359 TAATTTAAAA
* * * *
126258369 AAT AAT ACT AAT AAT AAT GAT GAT AAT AAT AAT AAT AAC AAT AAT ACA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT
126258417 AAT AAT AAAT AAT
1 AAT AAT -AAT AAT
126258430 CTAAAGTTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
2 1 0.02
3 44 0.90
4 4 0.08
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:126258607 original size:3 final size:3
Alignment explanation
Indices: 126258601--126258733 Score: 119
Period size: 3 Copynumber: 43.7 Consensus size: 3
126258591 AGAAAATATG
* *
126258601 ATA ATA ATA GTA ATA ATA ACA ATA AT- ATAA ATA ATA ATA TATA TATGA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A
* * *
126258649 ATA ATA ATA ATA ATA ATA ATA ATA ATA AAA ATA ACA ACAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
* * * *
126258695 GTA ATG ATA ATA AT- ATA A-A TTA ATA ATA AAA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
126258734 TAATTTGAAA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
2 5 0.05
3 88 0.83
4 12 0.11
5 1 0.01
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:126260877 original size:132 final size:129
Alignment explanation
Indices: 126260709--126261232 Score: 469
Period size: 130 Copynumber: 4.0 Consensus size: 129
126260699 AAGATAAGAG
* * * *
126260709 TACAATCTTCAGCCTACTCC-CTTGCTACCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGTTTC
1 TACAATCTTCAGCCTACTCCAC-TACT-GCTCAGGGAGAT-AGGATAGTGGCTTAAATCTG-CTC
* * * * * * *
126260773 CCTACTAACTCGGGAAGATAAAATCCATCGTCTTCAATCTGTTCCACCATTGCTTAGGGAGATAA
62 CCTACTAACTCGGG-AGATAAGATTCGTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGACAA
126260838 GATC
126 GATC
* * * * *
126260842 TACAATCTTCAGCCTGCTCCACTGCTGCTCAGGGAGACAAGGCTAATGGCTTAAATCTGCTCCCT
1 TACAATCTTCAGCCTACTCCACTACTGCTCAGGGAGA-TAGGATAGTGGCTTAAATCTGCTCCC-
* * * * * *
126260907 TGCTACCTCAAGGAGATAAGATTCGTCGTCTTCGATCTACTCCACTACTGCTTAGGGAAACAAGA
64 TACTAACTC-GGGAGATAAGATTCGTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGACAAGA
126260972 TC
128 TC
* * * * * *
126260974 TATAGTCTTTAGCCTACTCTACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACT
1 TACAATCTTCAGCCTACTCCACTACTGCTCAGGGAGATAGGATAGTGGCTTAAATCTGCTCC-CT
* * * * * *
126261039 ACT-GCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACCACTGCTTAGGGAGACAAGAT
65 ACTAAC-TCGGGAGATAAGATTCGTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGACAAGAT
*
126261103 T
129 C
* * * * *
126261104 TACAATCTTCAGCCTAGTCCACTACTGCTTAGAGAGATAGGATGGTGGCTTAAATATGCTCCACT
1 TACAATCTTCAGCCTACTCCACTACTGCTCAGGGAGATAGGATAGTGGCTTAAATCTGCTCC-CT
* * * * * * * * * *
126261169 ACT-GCTTAGGGAGACAAGACTCGCCATTTTTGATCTGCTCCACTACTGCTTAGGAAGACAAGAT
65 ACTAAC-TCGGGAGATAAGATTCGTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGACAAGAT
126261233 TCGCCATCTT
Statistics
Matches: 331, Mismatches: 54, Indels: 15
0.83 0.14 0.04
Matches are distributed among these distances:
130 165 0.50
131 29 0.09
132 111 0.34
133 25 0.08
134 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (129 bp):
TACAATCTTCAGCCTACTCCACTACTGCTCAGGGAGATAGGATAGTGGCTTAAATCTGCTCCCTA
CTAACTCGGGAGATAAGATTCGTCGTCTTCGATCTGCTCCACCACTGCTTAGGGAGACAAGATC
Found at i:126261088 original size:44 final size:44
Alignment explanation
Indices: 126261027--126261314 Score: 282
Period size: 44 Copynumber: 6.6 Consensus size: 44
126261017 GGTGGCTTAA
126261027 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
* * *
126261071 ATCTGCTCCACCACTGCTTAGGGAGACAAGATTTACAATCTTC-
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
* * * * * * **
126261114 AGCCTAG-TCCACTACTGCTTAGAGAGATAGGATGGTG---GCTTAA
1 A-TCT-GCTCCACTACTGCTTAGGGAGACAAGAT-TTGCCATCTTCG
* * * * *
126261157 ATATGCTCCACTACTGCTTAGGGAGACAAGACTCGCCATTTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
* *
126261201 ATCTGCTCCACTACTGCTTAGGAAGACAAGATTCGCCATCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
* * * *
126261245 ATCTGCTCTACTACTGCTTAGGGAGACAAGATCTACAATCTTC-
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
* *
126261288 AGCCTACTCCACTACTGCTTAGGGAGA
1 A-TCTGCTCCACTACTGCTTAGGGAGA
126261315 TAGGATCTGT
Statistics
Matches: 197, Mismatches: 38, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
41 2 0.01
42 26 0.13
43 3 0.02
44 164 0.83
45 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
Found at i:126261090 original size:130 final size:130
Alignment explanation
Indices: 126260803--126261232 Score: 495
Period size: 130 Copynumber: 3.3 Consensus size: 130
126260793 AAATCCATCG
* * * * * * *
126260803 TCTTCAATCTGTTCCACCATTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTGCT
1 TCTTCGATCTGCTCCACCACTGCTTAGGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACT
* * * ** * * * * *
126260868 GCTCAGGGAGACAAGGCTAATGGCTTAAATCTGCTCC-CTTGCTACCTCAAGGAGATAAGATTCG
66 GCTTAGGGAGA-TAGGATGGTGGCTTAAATCTGCTCCAC-TACT-GCTTAGGGAGACAAGATTCG
* *
126260932 TCG
128 CCA
* * * * * *
126260935 TCTTCGATCTACTCCACTACTGCTTAGGGAAACAAGATCTATAGTCTTTAGCCTACTCTACTACT
1 TCTTCGATCTGCTCCACCACTGCTTAGGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACT
*
126261000 GCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCA
66 GCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCA
* * *
126261065 TCTTCGATCTGCTCCACCACTGCTTAGGGAGACAAGATTTACAATCTTCAGCCTAGTCCACTACT
1 TCTTCGATCTGCTCCACCACTGCTTAGGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACT
* * *
126261130 GCTTAGAGAGATAGGATGGTGGCTTAAATATGCTCCACTACTGCTTAGGGAGACAAGACTCGCCA
66 GCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCA
* * *
126261195 TTTTTGATCTGCTCCACTACTGCTTA-GGAAGACAAGAT
1 TCTTCGATCTGCTCCACCACTGCTTAGGGAA-ACAAGAT
126261233 TCGCCATCTT
Statistics
Matches: 253, Mismatches: 43, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
129 3 0.01
130 163 0.64
131 24 0.09
132 63 0.25
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.29
Consensus pattern (130 bp):
TCTTCGATCTGCTCCACCACTGCTTAGGGAAACAAGATCTACAATCTTCAGCCTACTCCACTACT
GCTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCA
Found at i:126261127 original size:174 final size:174
Alignment explanation
Indices: 126260943--126261312 Score: 456
Period size: 174 Copynumber: 2.1 Consensus size: 174
126260933 CGTCTTCGAT
* * * * * *
126260943 CTACTCCACTACTGCTTAGGGAAACAAGATCTATAGTCTTTAGCCTACTCTACTACTGCTTAGGG
1 CTACTCCACTACTGCTTAGGGAAACAAGAT-GAT-GGCTTAAACATACTCCACTACTGCTTAGGG
* * *** * *
126261008 AGATAGGA-T-GGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCG
64 AGACAAGACTCGCCAGCTTAAATCTGCTCCACTACTGCTTAGGAAGACAAGATTCGCCATCTTCG
*
126261071 ATCTGCTCCACCACTGCTTAGGGAGACAAGATTTACAATCTTCAGC
129 ATCTGCTCCACCACTGCTTAGGGAGACAAGATCTACAATCTTCAGC
* * * * * * * *
126261117 CTAGTCCACTACTGCTTAGAGAGATAGGATGGTGGCTTAAATATGCTCCACTACTGCTTAGGGAG
1 CTACTCCACTACTGCTTAGGGAAACAAGATGATGGCTTAAACATACTCCACTACTGCTTAGGGAG
** **
126261182 ACAAGACTCGCCATTTTTGATCTGCTCCACTACTGCTTAGGAAGACAAGATTCGCCATCTTCGAT
66 ACAAGACTCGCCAGCTTAAATCTGCTCCACTACTGCTTAGGAAGACAAGATTCGCCATCTTCGAT
* *
126261247 CTGCTCTACTACTGCTTAGGGAGACAAGATCTACAATCTTCAGC
131 CTGCTCCACCACTGCTTAGGGAGACAAGATCTACAATCTTCAGC
126261291 CTACTCCACTACTGCTTAGGGA
1 CTACTCCACTACTGCTTAGGGA
126261313 GATAGGATCT
Statistics
Matches: 164, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
172 29 0.18
173 2 0.01
174 133 0.81
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (174 bp):
CTACTCCACTACTGCTTAGGGAAACAAGATGATGGCTTAAACATACTCCACTACTGCTTAGGGAG
ACAAGACTCGCCAGCTTAAATCTGCTCCACTACTGCTTAGGAAGACAAGATTCGCCATCTTCGAT
CTGCTCCACCACTGCTTAGGGAGACAAGATCTACAATCTTCAGC
Found at i:126261322 original size:44 final size:44
Alignment explanation
Indices: 126260803--126261314 Score: 250
Period size: 44 Copynumber: 11.7 Consensus size: 44
126260793 AAATCCATCG
* * * * *
126260803 TCTTCAATCTGTTCCACCATTGCTTAGGGAGATAAGATCTACAA
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
* * * *
126260847 TCTTCAGCCTGCTCCACTGCTGCTCAGGGAGACAAG-GCT--AA
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
* * * * * * * *
126260888 TGGCTTAAATCTGCTCC-CTTGCTACCTCAAGGAGATAAGATTCGT-C-G
1 T--CTTCAGTCTGCTCCAC-TACT-GCTTAGGGAGACAAGA-TC-TACAA
* * * *
126260935 TCTTC-GATCTACTCCACTACTGCTTAGGGAAACAAGATCTATAG
1 TCTTCAG-TCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
* * * * * * * *
126260979 TCTTTAGCCTACTCTACTACTGCTTAGGGAGATAGGATGGT---G
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGAT-CTACAA
* * * * * *
126261021 GCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCA
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
* *
126261065 TCTTC-GATCTGCTCCACCACTGCTTAGGGAGACAAGATTTACAA
1 TCTTCAG-TCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
* * * * * *
126261109 TCTTCAGCCTAG-TCCACTACTGCTTAGAGAGATAGGATGGT---G
1 TCTTCAGTCT-GCTCCACTACTGCTTAGGGAGACAAGAT-CTACAA
* * * * ** *
126261151 GCTTAAATATGCTCCACTACTGCTTAGGGAGACAAGACTCGCCAT
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGA-TCTACAA
* * * * *
126261196 TTTTGA-TCTGCTCCACTACTGCTTAGGAAGACAAGAT-TCGCCA
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGATCT-ACAA
*
126261239 TCTTC-GATCTGCTCTACTACTGCTTAGGGAGACAAGATCTACAA
1 TCTTCAG-TCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
* *
126261283 TCTTCAGCCTACTCCACTACTGCTTAGGGAGA
1 TCTTCAGTCTGCTCCACTACTGCTTAGGGAGA
126261315 TAGGATCTGT
Statistics
Matches: 351, Mismatches: 86, Indels: 62
0.70 0.17 0.12
Matches are distributed among these distances:
41 5 0.01
42 60 0.17
43 25 0.07
44 234 0.67
45 23 0.07
46 2 0.01
47 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTCAGTCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAA
Found at i:126261880 original size:21 final size:21
Alignment explanation
Indices: 126261850--126261898 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
126261840 AGAGTACCAT
*
126261850 TTTTGTTTTTCGAGAAATATCC
1 TTTT-TTTTTCGAGAAAGATCC
**
126261872 TTTTTTTTTTTAGAAAGATCC
1 TTTTTTTTTCGAGAAAGATCC
*
126261893 TCTTTT
1 TTTTTT
126261899 ACACTTGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.20, C:0.12, G:0.10, T:0.57
Consensus pattern (21 bp):
TTTTTTTTTCGAGAAAGATCC
Found at i:126267685 original size:40 final size:40
Alignment explanation
Indices: 126267641--126267719 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
126267631 TTATAGTACC
* * *
126267641 ACTTGGTATGTAGGATTGGATGGGTTGATTTTATCCCCAT
1 ACTTGGTATGTAGGACTGGATGAGTCGATTTTATCCCCAT
* * *
126267681 ACTTGGTGTGTAGGGCTGGGTGAGTCGATTTTATCCCCA
1 ACTTGGTATGTAGGACTGGATGAGTCGATTTTATCCCCA
126267720 CATGGTGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.18, C:0.15, G:0.30, T:0.37
Consensus pattern (40 bp):
ACTTGGTATGTAGGACTGGATGAGTCGATTTTATCCCCAT
Found at i:126269722 original size:29 final size:29
Alignment explanation
Indices: 126269663--126269724 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
126269653 AAATATACTT
*
126269663 TTTAGTCCCTATATTTTATATATTTGGAA
1 TTTAGTCCCTATATTTTATATATTTGAAA
* * *
126269692 TTTAGTCTCTTTATTTT-TATTTTTAGAAA
1 TTTAGTCCCTATATTTTATATATTT-GAAA
126269721 TTTA
1 TTTA
126269725 TTCATACTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.26, C:0.08, G:0.08, T:0.58
Consensus pattern (29 bp):
TTTAGTCCCTATATTTTATATATTTGAAA
Found at i:126269944 original size:29 final size:30
Alignment explanation
Indices: 126269895--126269951 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
126269885 ACTTACATTT
* *
126269895 TTAAATATAAAAATAATGAGATTAAATTCC
1 TTAAATATAAAAATAAAGAGAATAAATTCC
*
126269925 TTAAA-ATAAAAGTAAAGAGAATAAATT
1 TTAAATATAAAAATAAAGAGAATAAATT
126269952 TCAAATACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.58, C:0.04, G:0.09, T:0.30
Consensus pattern (30 bp):
TTAAATATAAAAATAAAGAGAATAAATTCC
Found at i:126276653 original size:2 final size:2
Alignment explanation
Indices: 126276646--126276673 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
126276636 TTTTATGCAC
126276646 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126276674 TATTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126277678 original size:22 final size:20
Alignment explanation
Indices: 126277645--126277685 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
126277635 GTTACATACG
*
126277645 TATATATTATATGTATTTTA
1 TATATATTATATATATTTTA
126277665 TATATTATGTATATATATTTT
1 TATA-TAT-TATATATATTTT
126277686 TTTATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATATATTATATATATTTTA
Found at i:126289272 original size:45 final size:45
Alignment explanation
Indices: 126289175--126289290 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 45
126289165 TTATGCTTAA
*
126289175 GATGAAAACCCGAAAAGGGCATCTTAATAAAAAAAAAAGATCAAG
1 GATGAAAACCCGAAAAGGGCGTCTTAATAAAAAAAAAAGATCAAG
* * ** * *
126289220 G-CGAAAACCCGAAAAGGGCGTCTTGATTAGTACAAAAAGAT-TAG
1 GATGAAAACCCGAAAAGGGCGTCTT-AATAAAAAAAAAAGATCAAG
* *
126289264 GATGAAAACCCG-AGAGGGCGTCCTAAT
1 GATGAAAACCCGAAAAGGGCGTCTTAAT
126289291 GAAACAAACC
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
43 2 0.03
44 34 0.59
45 22 0.38
ACGTcount: A:0.45, C:0.16, G:0.23, T:0.16
Consensus pattern (45 bp):
GATGAAAACCCGAAAAGGGCGTCTTAATAAAAAAAAAAGATCAAG
Found at i:126290263 original size:73 final size:72
Alignment explanation
Indices: 126290134--126290271 Score: 186
Period size: 73 Copynumber: 1.9 Consensus size: 72
126290124 AATTCATGTT
* * * **
126290134 TTCAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTCAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAA
126290199 TTTATGC
66 TTTATGC
** * *
126290206 TTCAAAAATATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCA
1 TTCAAAAA-ATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCA
126290271 A
65 A
126290272 ATTCTCTTGT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
72 7 0.12
73 49 0.88
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (72 bp):
TTCAAAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAA
TTTATGC
Found at i:126290432 original size:70 final size:70
Alignment explanation
Indices: 126290308--126290444 Score: 204
Period size: 70 Copynumber: 2.0 Consensus size: 70
126290298 ATTTTTAGTT
* *
126290308 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGGCTCAAGACACGTTGAGGTA-ATTCAAT
1 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTCAAT
126290372 TTATG
66 TTATG
** * *
126290377 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAA
1 TTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTCAA
126290442 TTT
65 TTT
126290445 CTACTTTCCA
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
69 4 0.07
70 48 0.80
71 8 0.13
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (70 bp):
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATATTCAAT
TTATG
Found at i:126290533 original size:55 final size:54
Alignment explanation
Indices: 126290462--126290661 Score: 263
Period size: 55 Copynumber: 3.8 Consensus size: 54
126290452 CCAATTCCTG
*
126290462 TTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTTCAATTTATA
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATA
* *
126290516 TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTTTA
1 TTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATA
*
126290571 TTTTTCAAAAAGCAACTCATATTGCGAGAGGTGAGTTGTA-CC--T---TTT-T-
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTTCAATTTATA
* * *
126290618 GTTTTCAAAAATCAACCCATATTGCGAGAAGTGAGTTGAGCCTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
126290662 GGGTCATATG
Statistics
Matches: 133, Mismatches: 8, Indels: 15
0.85 0.05 0.10
Matches are distributed among these distances:
46 1 0.01
47 36 0.27
48 1 0.01
49 3 0.02
52 1 0.01
54 39 0.29
55 52 0.39
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.36
Consensus pattern (54 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTCAATTTATA
Found at i:126292904 original size:22 final size:20
Alignment explanation
Indices: 126292871--126292911 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
126292861 GTTACATACG
*
126292871 TATATATTATATGTATTTTA
1 TATATATTATATATATTTTA
126292891 TATATTATGTATATATATTTT
1 TATA-TAT-TATATATATTTT
126292912 TTTTATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 11 0.61
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATATATTATATATATTTTA
Found at i:126292996 original size:34 final size:35
Alignment explanation
Indices: 126292958--126293023 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 35
126292948 CTATTACCCA
* *
126292958 TATATATATTATTATTAGGTTTA-TTTATTCTTAT
1 TATATATATTATTAGTAGGTATATTTTATTCTTAT
* *
126292992 TATATTTATTATTAGTATGTATATTTTATTCT
1 TATATATATTATTAGTAGGTATATTTTATTCT
126293024 ACATATACAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 19 0.70
35 8 0.30
ACGTcount: A:0.29, C:0.03, G:0.06, T:0.62
Consensus pattern (35 bp):
TATATATATTATTAGTAGGTATATTTTATTCTTAT
Found at i:126295334 original size:38 final size:38
Alignment explanation
Indices: 126295288--126295367 Score: 144
Period size: 38 Copynumber: 2.1 Consensus size: 38
126295278 ACACCGTTTC
126295288 AGGA-GCCATAACCCAATGACCCAACCTGTGCCCGGAT
1 AGGATGCCATAACCCAATGACCCAACCTGTGCCCGGAT
*
126295325 AGGATGCCATAACCCGATGACCCAACCTGTGCCCGGAT
1 AGGATGCCATAACCCAATGACCCAACCTGTGCCCGGAT
126295363 AGGAT
1 AGGAT
126295368 CCGCGCTTTG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 4 0.10
38 37 0.90
ACGTcount: A:0.29, C:0.33, G:0.24, T:0.15
Consensus pattern (38 bp):
AGGATGCCATAACCCAATGACCCAACCTGTGCCCGGAT
Found at i:126299539 original size:31 final size:31
Alignment explanation
Indices: 126299501--126299562 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
126299491 AAATAATGCT
126299501 ATTACTATTTTGGTCATTCACATTTTAGATA
1 ATTACTATTTTGGTCATTCACATTTTAGATA
126299532 ATTACTATTTTGGTCATTCACATTTTAGATA
1 ATTACTATTTTGGTCATTCACATTTTAGATA
126299563 GTTTTTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.13, G:0.10, T:0.48
Consensus pattern (31 bp):
ATTACTATTTTGGTCATTCACATTTTAGATA
Found at i:126299575 original size:31 final size:31
Alignment explanation
Indices: 126299501--126299578 Score: 111
Period size: 31 Copynumber: 2.5 Consensus size: 31
126299491 AAATAATGCT
*
126299501 ATTACTATTTTGGTCATTCACATTTTAGATA
1 ATTACTAATTTGGTCATTCACATTTTAGATA
*
126299532 ATTACTATTTTGGTCATTCACATTTTAGATA
1 ATTACTAATTTGGTCATTCACATTTTAGATA
* **
126299563 GTTTTTAATTTGGTCA
1 ATTACTAATTTGGTCA
126299579 CTCTCTATTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTACTAATTTGGTCATTCACATTTTAGATA
Found at i:126305122 original size:26 final size:26
Alignment explanation
Indices: 126305086--126305169 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
126305076 CATGAAATTC
126305086 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126305112 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126305138 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
126305164 TTATCA
1 TTATCA
126305170 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126312131 original size:26 final size:26
Alignment explanation
Indices: 126312095--126312178 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
126312085 CATGAAATTC
126312095 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126312121 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126312147 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
126312173 TTATCA
1 TTATCA
126312179 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126318217 original size:2 final size:2
Alignment explanation
Indices: 126318210--126318237 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
126318200 CAAATAACAA
126318210 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126318238 TGCTTTGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126321349 original size:131 final size:129
Alignment explanation
Indices: 126321076--126321397 Score: 389
Period size: 131 Copynumber: 2.5 Consensus size: 129
126321066 TAATTATCCA
* * *
126321076 TTTAAAAATTCTCTAAAACGAAGGCGATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAATTCT-TAAAACGAAGGCAATGTTC-ATGTTTGGAAATTCGAGGAATCGTGCCCTATC
* ** * * * *
126321141 GTGCTGGGTTGCAATTTCTTGTTTGTTCAACATAATCGAATATTCCTTTGGAATTTCACTCATGT
64 GTGCTAGGTTGCAATTTCCCGTTTATTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
126321206 C
129 C
* *
126321207 TTTAAAAATTCTTTAAAACGAAGGAAATGTTCACTGTTTGGAAACTCGAGGAATCGTGCCCTATC
1 TTTAAAAATTC-TTAAAACGAAGGCAATGTTCA-TGTTTGGAAATTCGAGGAATCGTGCCCTATC
*
126321272 GTGCTATGTTGCAATTTCCCGTTTATTCAAGAATAATCGAATATCCCTTTAGAATTTCACTCATG
64 GTGCTAGGTTGCAATTTCCCGTTTATTCAA-AATAATCGAATATCCCTTTAGAATTTCACTCATG
126321337 T-
128 TC
** * * * * *
126321338 TTTCTAGATTC-TGAAAC-AAGGCAATATTCAATGTCTAGAAATTCGAGGAATCGTGCCCTA
1 TTTAAAAATTCTTAAAACGAAGGCAATGTTC-ATGTTTGGAAATTCGAGGAATCGTGCCCTA
126321398 CTGTGTTGGG
Statistics
Matches: 165, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
128 36 0.22
129 6 0.04
130 1 0.01
131 89 0.54
132 33 0.20
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (129 bp):
TTTAAAAATTCTTAAAACGAAGGCAATGTTCATGTTTGGAAATTCGAGGAATCGTGCCCTATCGT
GCTAGGTTGCAATTTCCCGTTTATTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTC
Found at i:126335066 original size:177 final size:175
Alignment explanation
Indices: 126334794--126335541 Score: 1040
Period size: 177 Copynumber: 4.2 Consensus size: 175
126334784 AGTGGCAGTG
* * * *
126334794 GAGCAGGTTCAAAATATGGTCTTATCTTCCTAAGGTAGAAAGGAAGCAGACTGAAGATTGAAGAT
1 GAGCAGGTTGAAGAT-TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
*
126334859 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGC-GAATCTTATCTCCATGTATCGGCA
65 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCAG-ATCTTATCTCCATGTATCAGCA
* * *
126334923 ATGGAACAGATTTTAGCCACCAGCCTTATCTCTCTGAGGTAGCAAGA
129 ATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGA
* * * *
126334970 GAGCAGGTTGAAGATGGTGGTCTTATCTCCCTAAGGTAGTAAGGAAGCAGACTGAAAATTGAAGA
1 GAGCAGGTTGAAGAT--TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* *
126335035 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGC-GAATCTTATCTCTATGTATCGGC
64 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCAG-ATCTTATCTCCATGTATCAGC
* * *
126335099 AATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTAAGGTAGTAAGA
128 AATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGA
* * * *
126335147 GAGCAAGTTGAAGATAGTGGTCTTATCTTCCTGAGGTAGCAAGGAAGTAGATTGATGATTGAAGA
1 GAGCAGGTTGAAGAT--TGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
* * * *
126335212 TCTTATCTCTCTAAGCATTAGTGGAACAGATC-AGAAGAGGCAGATCTTATCTCCATGTA-CTAA
64 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-AAGAGGCAGATCTTATCTCCATGTATC-AG
* * *
126335275 CAATGGAGCAGATTTAAGCC-CCAAGCCTTATCTCTTTGAGGTAGTAAGA
127 CAATGGAGCAGATTTAAGCCACC-AGCCTTATCTCTCTAAGGTAGCAAGA
*
126335324 GAACAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 GAGCAGGTTGAAGATTG-GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
*
126335389 CTTATCTCCCTAAGCAGTAGTAGAGCTA-ATCGAAAGAGGCAGATCTTATCTCCATGTATCAGCA
65 CTTATCTCCCTAAGCAGTAGTGGAGC-AGATCGAAAGAGGCAGATCTTATCTCCATGTATCAGCA
* * *
126335453 ATGGAGCTGATTTAAGCCTCAAGCCTTATCTCTCTAAGGTAGCAAGA
129 ATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGA
126335500 GAGCAGGTTGAAGATTGAGTCTTATCTTCCTGAGGTAGCAAG
1 GAGCAGGTTGAAGATTG-GTCTTATCTTCCTGAGGTAGCAAG
126335542 ATCAAAGATG
Statistics
Matches: 516, Mismatches: 46, Indels: 20
0.89 0.08 0.03
Matches are distributed among these distances:
175 2 0.00
176 194 0.38
177 319 0.62
178 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (175 bp):
GAGCAGGTTGAAGATTGGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATC
TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAAGAGGCAGATCTTATCTCCATGTATCAGCAAT
GGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAGGTAGCAAGA
Found at i:126335593 original size:125 final size:126
Alignment explanation
Indices: 126335431--126335667 Score: 361
Period size: 125 Copynumber: 1.9 Consensus size: 126
126335421 AAAGAGGCAG
* *
126335431 ATCTTATCTCCATGTATCAGCAATGGAGCTGATTTAAGCCTCAAGCCTTATCTCTCTAAGGTAGC
1 ATCTTATCTCCATGTATCAGCAATGGAGCTGATTTAAGCCACAAGCCTTATCTCTCTAAAGTAGC
126335496 AAGAGAGCAGGTTGAAGATTG-AGTCTTATCTTCCTGAGGTAGCAAGATCAAAGATGGTAA
66 AAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGATCAAAGATGGTAA
* * * * *
126335556 ATCTTATCTCTATGTATCGGTAATGGAG-TAGATTTAAGCCACCAGCGTTATCTCTCTAAAGTAG
1 ATCTTATCTCCATGTATCAGCAATGGAGCT-GATTTAAGCCACAAGCCTTATCTCTCTAAAGTAG
* **
126335620 CAAGAGAGTAGGTTGTCGATTGTAGTCTTATCTTCCTGAGGTAGCAAG
65 CAAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAG
126335668 GAAGCAGATT
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
124 1 0.01
125 74 0.74
126 25 0.25
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (126 bp):
ATCTTATCTCCATGTATCAGCAATGGAGCTGATTTAAGCCACAAGCCTTATCTCTCTAAAGTAGC
AAGAGAGCAGGTTGAAGATTGTAGTCTTATCTTCCTGAGGTAGCAAGATCAAAGATGGTAA
Found at i:126341664 original size:29 final size:29
Alignment explanation
Indices: 126341622--126341678 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
126341612 TTATGGAAGA
* * *
126341622 GATGGAGAACTTGTTCGTTGAGAGTTCGC
1 GATGAAGAACTTGTTCATTGAGAATTCGC
126341651 GATGAAGAACTTGTTCATTGAGAATTCG
1 GATGAAGAACTTGTTCATTGAGAATTCG
126341679 TGTCAAGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTGAGAATTCGC
Found at i:126343490 original size:26 final size:26
Alignment explanation
Indices: 126343432--126343567 Score: 222
Period size: 26 Copynumber: 5.3 Consensus size: 26
126343422 TGATACAAAT
126343432 TGATAATAGGTTAGGTAAAT-TT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
126343456 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126343482 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126343508 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126343534 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126343560 TGATAATA
1 TGATAATA
126343568 ATTTCATGTC
Statistics
Matches: 107, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
24 20 0.19
25 2 0.02
26 85 0.79
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126345594 original size:136 final size:136
Alignment explanation
Indices: 126345350--126345634 Score: 536
Period size: 136 Copynumber: 2.1 Consensus size: 136
126345340 GAGTAGTCTC
126345350 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
126345415 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
126345480 CTGTTA
131 CTGTTA
126345486 CCCAAATGGGCTTGCATATGTTTACTGATGTT-CATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
126345550 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAA-GGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
126345615 ACTGTTA
130 ACTGTTA
**
126345622 CCTGAATGGGCTT
1 CCCAAATGGGCTT
126345635 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 46 0.32
136 100 0.68
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:126347777 original size:6 final size:7
Alignment explanation
Indices: 126347757--126347785 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
126347747 GATTTCAGTC
126347757 TCATTTT
1 TCATTTT
126347764 TCATTTT
1 TCATTTT
126347771 TCATTTT
1 TCATTTT
126347778 TCATTTT
1 TCATTTT
126347785 T
1 T
126347786 TTATCTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.72
Consensus pattern (7 bp):
TCATTTT
Found at i:126349330 original size:26 final size:26
Alignment explanation
Indices: 126349271--126349407 Score: 231
Period size: 26 Copynumber: 5.3 Consensus size: 26
126349261 TGATACAAAT
126349271 TGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTCCA
126349296 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126349322 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126349348 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126349374 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126349400 TGATAATA
1 TGATAATA
126349408 ATTTCATGTC
Statistics
Matches: 108, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
25 23 0.21
26 85 0.79
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126351104 original size:54 final size:55
Alignment explanation
Indices: 126351019--126351158 Score: 185
Period size: 54 Copynumber: 2.6 Consensus size: 55
126351009 GAGGAAGCGT
* * **
126351019 TCTGGTGGCTATGCCACAAATATCTAATCTGGTGGCTCAGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGTA
* * *
126351073 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGTA
* *
126351128 TCTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
126351159 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
54 58 0.76
55 18 0.24
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCAGCCACAAATATCTGTA
Found at i:126351148 original size:27 final size:26
Alignment explanation
Indices: 126351017--126351158 Score: 158
Period size: 27 Copynumber: 5.3 Consensus size: 26
126351007 TGGAGGAAGC
* *
126351017 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
** * *
126351044 AATCTGGTGGCTCAGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
126351071 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
126351098 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* *
126351125 GTATCTGGTGACTCTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
126351152 GTTCTGG
1 GTTCTGG
126351159 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.06
27 79 0.77
28 17 0.17
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:126352160 original size:18 final size:18
Alignment explanation
Indices: 126352121--126352236 Score: 146
Period size: 18 Copynumber: 6.5 Consensus size: 18
126352111 AATGATATGT
*
126352121 AATCTTAGATATGA-TAC
1 AATCTTAGATATGATTGC
*
126352138 AATCTTACATATGATTGC
1 AATCTTAGATATGATTGC
126352156 AATCTTAGATATGATTGC
1 AATCTTAGATATGATTGC
* *
126352174 AATCTTAGATACGA-TAC
1 AATCTTAGATATGATTGC
*
126352191 AATCTTAAATATGATTGC
1 AATCTTAGATATGATTGC
* *
126352209 AATCCTAGATATGATATAC
1 AATCTTAGATATGAT-TGC
126352228 AATCTTAGA
1 AATCTTAGA
126352237 AGATATGATT
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
17 27 0.32
18 47 0.56
19 10 0.12
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (18 bp):
AATCTTAGATATGATTGC
Found at i:126352161 original size:35 final size:37
Alignment explanation
Indices: 126352104--126352236 Score: 143
Period size: 35 Copynumber: 3.8 Consensus size: 37
126352094 ATGGAAATAT
** *
126352104 AATCTT-CA-ATGATATGTAATCTTAGATATGA-TAC
1 AATCTTACATATGATATACAATCTTAGATATGATTGC
*
126352138 AATCTTACATATGAT-TGCAATCTTAGATATGATTGC
1 AATCTTACATATGATATACAATCTTAGATATGATTGC
* * *
126352174 AATCTTAGATACG--ATACAATCTTAAATATGATTGC
1 AATCTTACATATGATATACAATCTTAGATATGATTGC
* *
126352209 AATCCTAGATATGATATACAATCTTAGA
1 AATCTTACATATGATATACAATCTTAGA
126352237 AGATATGATT
Statistics
Matches: 84, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
34 6 0.07
35 48 0.57
36 18 0.21
37 12 0.14
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (37 bp):
AATCTTACATATGATATACAATCTTAGATATGATTGC
Found at i:126352184 original size:53 final size:54
Alignment explanation
Indices: 126352112--126352236 Score: 198
Period size: 53 Copynumber: 2.3 Consensus size: 54
126352102 ATAATCTTCA
* * * *
126352112 ATGATATGTAATCTTAGATATGATACAATCTTACATATGATTGCAATCTTAGAT
1 ATGATATGCAATCTTAGATACGATACAATCTTAAATATGATTGCAATCCTAGAT
126352166 ATGAT-TGCAATCTTAGATACGATACAATCTTAAATATGATTGCAATCCTAGAT
1 ATGATATGCAATCTTAGATACGATACAATCTTAAATATGATTGCAATCCTAGAT
*
126352219 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
126352237 AGATATGATT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
53 49 0.75
54 16 0.25
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (54 bp):
ATGATATGCAATCTTAGATACGATACAATCTTAAATATGATTGCAATCCTAGAT
Found at i:126352732 original size:17 final size:17
Alignment explanation
Indices: 126352712--126352777 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
126352702 TTCTAAACCA
*
126352712 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
126352729 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
126352746 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
126352761 ATTATATATTATATTTT
1 A-TATATATTATATTTT
126352778 AAATTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:126352802 original size:26 final size:26
Alignment explanation
Indices: 126352754--126352803 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
126352744 TTATAAATAT
* * * *
126352754 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
126352780 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
126352804 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:126354550 original size:25 final size:24
Alignment explanation
Indices: 126354521--126354567 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
126354511 TATCATTTAT
*
126354521 TTTAAACT-TTTTGTATATTACTTAC
1 TTTAAAATATTTT-TATA-TACTTAC
126354546 TTTAAAATATTTTTATATACTT
1 TTTAAAATATTTTTATATACTT
126354568 CTTATCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 11 0.55
26 4 0.20
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTAAAATATTTTTATATACTTAC
Found at i:126356363 original size:177 final size:177
Alignment explanation
Indices: 126356063--126356611 Score: 593
Period size: 193 Copynumber: 3.0 Consensus size: 177
126356053 GATCAATCAA
* * * * * ** *** *
126356063 CACATGTTGATTTATCTCTATTTGAGAGTCAAGTTAATGTCGACTTTGTTTTTTTATGAGTCTAC
1 CACATGTTGATTGATATCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAG
* *
126356128 TTTTCCTTTT-ATTGGCATACAATCATCAGTTGATGAAGAGATAAAAACTAGGCTCATAATCTAG
66 TTTT-CTTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCTAG
* * * *
126356192 CAAAGTCAACATTATAGGGCTATTAGCAACGAATAGCAACTTGTACTTG
130 CAAAGTCAGCATTATATGGCTATTAGCAATGGATA-CAACTTGTACTTG
* * * *
126356241 C-CATGTTGATTGATATCTAATTGAGAGCTAAGTTAATGTTGGCTTTACTGAATTATGAGTCTAG
1 CACATGTTGATTGATATCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAG
* * * * *
126356305 TTTTCTTTTCATTTGTATGCAATCATTAGTTGATGAAGGGATATAAACTAGACTCATAATCCT-G
66 TTTTCTTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAAT-CTAG
* *
126356369 CAAAGTCGGCATTATATGGCTATTAGCAATGGATAACAATTTGTACTTGCCAATG
130 CAAAGTCAGCATTATATGGCTATTAGCAATGGAT-ACAACTTGTAC-T-----TG
* *
126356424 ATCAATCAACACATGTTGATTGATCTCTAATTGAAAGCCAAGTTAATGTCGACTTTGCTGAATTA
1 ---------CACATGTTGATTGATATCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTA
* *
126356489 TGAGTCTAGTTTTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAATTAGACTCA
57 TGAGTCTAGTTTTCTTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCA
*
126356554 TAAT-TCAGCAAAGTCAGCATTATATGGCTATTAGCAATGGATACAACTTGTAATTG
122 TAATCT-AGCAAAGTCAGCATTATATGGCTATTAGCAATGGATACAACTTGTACTTG
126356610 CA
1 CA
126356612 AATGATCAAT
Statistics
Matches: 308, Mismatches: 42, Indels: 43
0.78 0.11 0.11
Matches are distributed among these distances:
176 5 0.02
177 138 0.45
178 5 0.02
183 2 0.01
186 2 0.01
191 2 0.01
192 10 0.03
193 144 0.47
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (177 bp):
CACATGTTGATTGATATCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAG
TTTTCTTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCTAGC
AAAGTCAGCATTATATGGCTATTAGCAATGGATACAACTTGTACTTG
Found at i:126356576 original size:193 final size:192
Alignment explanation
Indices: 126356242--126356702 Score: 681
Period size: 193 Copynumber: 2.4 Consensus size: 192
126356232 TTGTACTTGC
* * * * *
126356242 CATGTTGATTGATATCTAATTGAGAGCTAAGTTAATGTTGGCTTTACTGAATTATGAGTCTAGTT
1 CATGTTGATTGATCTCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAGTT
* * * * * * *
126356307 TTCTTTTCATTTGTATGCAATCATTAGTTGATGAAGGGATATAAACTAGACTCATAATCCTGCAA
66 TTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAA
* * * *
126356372 AGTCGGCATTATATGGCTATTAGCAATGGATAACAATTTGTACTTGCCAATGATCAATCAACA
131 AGTCAGCATTATATGGCTATTAGCAATGGAT-ACAACTTGTAATTGCAAATGATCAATCAACA
*
126356435 CATGTTGATTGATCTCTAATTGAAAGCCAAGTTAATGTCGACTTTGCTGAATTATGAGTCTAGTT
1 CATGTTGATTGATCTCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAGTT
* *
126356500 TTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAATTAGACTCATAATTCAGCAA
66 TTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAA
126356565 AGTCAGCATTATATGGCTATTAGCAATGGATACAACTTGTAATTGCAAATGATCAATCAACA
131 AGTCAGCATTATATGGCTATTAGCAATGGATACAACTTGTAATTGCAAATGATCAATCAACA
* * * *
126356627 CATGTTGATTGATCTCTAATTGAGAA-CCAATTTAATGTCGACTTTACTAAATTATGAATCTAAT
1 CATGTTGATTGATCTCTAATTGA-AAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAGT
*
126356691 TTTTCTTTCATT
65 TTTCCTTTCATT
126356703 TACAAGCAAT
Statistics
Matches: 242, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
192 95 0.39
193 147 0.61
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (192 bp):
CATGTTGATTGATCTCTAATTGAAAGCCAAGTTAATGTCGACTTTACTGAATTATGAGTCTAGTT
TTCCTTTCATTGGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGACTCATAATCCAGCAA
AGTCAGCATTATATGGCTATTAGCAATGGATACAACTTGTAATTGCAAATGATCAATCAACA
Found at i:126357886 original size:19 final size:20
Alignment explanation
Indices: 126357837--126357886 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
126357827 ATTAATTTAC
126357837 ATAATTTAAAAAGTATTAATT
1 ATAA-TTAAAAAGTATTAATT
* * *
126357858 ATTATAAAAAATTATTAA-T
1 ATAATTAAAAAGTATTAATT
126357877 ATAATTAAAA
1 ATAATTAAAA
126357887 TAATAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 9 0.38
20 12 0.50
21 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
ATAATTAAAAAGTATTAATT
Found at i:126358159 original size:24 final size:24
Alignment explanation
Indices: 126358096--126358147 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
126358086 TTTCTAGAAG
* *
126358096 ATTTAGTATTTATGAG-TATAATAT
1 ATTTAGCATTTATTAGCT-TAATAT
126358120 ATTTAGCATTTATTAGCTTAATAT
1 ATTTAGCATTTATTAGCTTAATAT
126358144 ATTT
1 ATTT
126358148 TACTTTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCTTAATAT
Found at i:126358239 original size:5 final size:5
Alignment explanation
Indices: 126358229--126358256 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
126358219 GTGTGTGTTC
126358229 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
126358257 TTCAAACTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:126360542 original size:3 final size:3
Alignment explanation
Indices: 126360534--126360568 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
126360524 AAATATGATT
126360534 TAA TAA TAA TAA TAA TAA TAA TAA TAA TATA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T
126360569 GTAATCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:126360660 original size:22 final size:23
Alignment explanation
Indices: 126360621--126360733 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 23
126360611 CATAAAAAAA
*
126360621 ATAAATATTATATAAAATGTAAT
1 ATAAATATTATATAAAATATAAT
126360644 ATAAATA-TATA-AGAAATAT-A-
1 ATAAATATTATATA-AAATATAAT
* *
126360664 ATAGATATAATATAAAATA-ACAT
1 ATAAATATTATATAAAATATA-AT
* *
126360687 ATAAAGCA--ATAT-ATATAT-AT
1 ATAAA-TATTATATAAAATATAAT
126360707 ATAAATAATTA-ATAAATATATAAT
1 ATAAAT-ATTATATAAA-ATATAAT
126360731 ATA
1 ATA
126360734 TGTGAAAATA
Statistics
Matches: 68, Mismatches: 8, Indels: 27
0.66 0.08 0.26
Matches are distributed among these distances:
20 14 0.21
21 16 0.24
22 17 0.25
23 15 0.22
24 6 0.09
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (23 bp):
ATAAATATTATATAAAATATAAT
Found at i:126362523 original size:83 final size:83
Alignment explanation
Indices: 126362379--126362646 Score: 421
Period size: 83 Copynumber: 3.2 Consensus size: 83
126362369 CGATTTGTGG
* * * * *
126362379 GGATGCCAAATCAGT-TTGAGTTTGTTTTTAGAACATTCGAGAGTCATATCTGCTACGTCCTCGA
1 GGATGCCAAATCA-TCTTGAGTCTG-TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
126362443 TTTGTTCCTTGTAAGCACAA
64 TTTGTTCCTTGTAAGCACAA
*
126362463 GGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATATCCTCGATT
1 GGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
126362528 TGTTCCTTGTAAGCACAA
66 TGTTCCTTGTAAGCACAA
*
126362546 GGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTACAATGTCCTCGATT
1 GGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
*
126362611 TGTTCCTTGTAAACACAA
66 TGTTCCTTGTAAGCACAA
* *
126362629 GAATACCAAATCATCTTG
1 GGATGCCAAATCATCTTG
126362647 GATCTGCTTC
Statistics
Matches: 172, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
83 151 0.88
84 21 0.12
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (83 bp):
GGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATT
TGTTCCTTGTAAGCACAA
Found at i:126362782 original size:119 final size:119
Alignment explanation
Indices: 126362570--126363047 Score: 715
Period size: 119 Copynumber: 4.0 Consensus size: 119
126362560 CTTGAGTCTG
* * * * *
126362570 TTTGAGAACATTTGAGAGTCATATCTACAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
126362635 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGTTATA
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATC
* *
126362689 TTTGAAAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTGAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
126362754 CAAATCATCTTGGATCTACTTCAGTATAAACATCTGAAGGTTAAATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATC
* *
126362808 TTTTAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTTTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
126362873 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATC
* * * * * *
126362927 TTTGAGAATGTCTGCGAGTCAAACCTGCTATGTCCTTGACTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* ** *
126362992 CAAATCATCTTGGATCTGCTTCAACATAAATGTCTGAA-GTCTAGATCTGCTGTC
66 CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGT-TAGATCTGCTATC
126363046 TT
1 TT
126363048 CAATTTATTT
Statistics
Matches: 327, Mismatches: 31, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
118 2 0.01
119 325 0.99
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAATATAAACATCTGAAGGTTAGATCTGCTATC
Found at i:126374932 original size:20 final size:20
Alignment explanation
Indices: 126374904--126374942 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
126374894 TTAATAATAA
* *
126374904 TAATAATAATATATATAATG
1 TAATAATAAAAAATATAATG
*
126374924 TAATCATAAAAAATATAAT
1 TAATAATAAAAAATATAAT
126374943 TGGCGATATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
TAATAATAAAAAATATAATG
Found at i:126375014 original size:22 final size:23
Alignment explanation
Indices: 126374975--126375045 Score: 62
Period size: 22 Copynumber: 3.2 Consensus size: 23
126374965 CATAAAAAAA
*
126374975 ATAAATATTATATAAAATGTAAT
1 ATAAATATTATATAAAATATAAT
126374998 ATAAATA-TATA-AGAAATAT-A-
1 ATAAATATTATATA-AAATATAAT
* *
126375018 ATAGATATAATATAAAATA-ACAT
1 ATAAATATTATATAAAATATA-AT
126375041 ATAAA
1 ATAAA
126375046 GCAATATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
20 6 0.16
21 10 0.26
22 11 0.29
23 11 0.29
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.32
Consensus pattern (23 bp):
ATAAATATTATATAAAATATAAT
Found at i:126385540 original size:241 final size:241
Alignment explanation
Indices: 126385098--126385887 Score: 1301
Period size: 241 Copynumber: 3.3 Consensus size: 241
126385088 AACTCTAACA
** * * *
126385098 ATTAATTCAACTCTCAATTAAGGATCAAGATTTATTAGATAAACAAATTAGATTGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATCAACATTTATTAGATAAACAAACTAGATCGATTGAAATTG
* *
126385163 ACTATGACCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
66 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * *
126385228 TGCTCATAGCTTAATAATGTCAATTTTGCTAGATTATGAGCCTAATTTTTATTTCTTCATCATCG
131 TGCTCGTAGCTTTATAATGTCAACTTTGCTAGATTATGAGCCTAATTTTCATTTCTTCATCATCG
126385293 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
196 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * *
126385339 ACTAATTTGGCTCTCAATTAAGGATCAACATTTATTAGATGAACAAACTAGATCGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATCAACATTTATTAGATAAACAAACTAGATCGATTGAAATTG
*
126385404 ACCATGATTAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
66 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * * * *
126385469 TGCTTGTAGCTTTATAATGTCAACTTTGCTGGATTATGACCCTAATTTTCATTTCTTCCTCATCA
131 TGCTCGTAGCTTTATAATGTCAACTTTGCTAGATTATGAGCCTAATTTTCATTTCTTCATCATCG
*
126385534 CATGCAAATAAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
196 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
**
126385580 ATTAATTTGACTCTCAATTAAGGATCAACATTTATTAGATAAACAAACTAGATCGATTGAAACAG
1 ATTAATTTGACTCTCAATTAAGGATCAACATTTATTAGATAAACAAACTAGATCGATTGAAATTG
*
126385645 ACCATGATCAATCTATTAGTTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
66 ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
* * *
126385710 TACTCGTAGCTTTATAATGTCAACTTTGCTAGATTATGAGCCTAATTTCCATTTCATCATCATCG
131 TGCTCGTAGCTTTATAATGTCAACTTTGCTAGATTATGAGCCTAATTTTCATTTCTTCATCATCG
*
126385775 CATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGAC
196 CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
* * *
126385821 ATTAATTTGACTCTCAATTAAAGATCAACATTTATTAAATAAACAAACTCGATCGATTGAAATTG
1 ATTAATTTGACTCTCAATTAAGGATCAACATTTATTAGATAAACAAACTAGATCGATTGAAATTG
126385886 AC
66 AC
126385888 TGTAGAAGCC
Statistics
Matches: 506, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
241 506 1.00
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.34
Consensus pattern (241 bp):
ATTAATTTGACTCTCAATTAAGGATCAACATTTATTAGATAAACAAACTAGATCGATTGAAATTG
ACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACATATAAGATGCTTTCCAA
TGCTCGTAGCTTTATAATGTCAACTTTGCTAGATTATGAGCCTAATTTTCATTTCTTCATCATCG
CATGCAAATGAAAGGAAAGTTAGACTCATAATTCAGCAAAGTCGAC
Found at i:126386066 original size:18 final size:18
Alignment explanation
Indices: 126386042--126386087 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
126386032 TAAGCCCCTC
126386042 CAAAAAAAAACCTAACC-
1 CAAAAAAAAACCTAACCA
126386059 CAAAAAAAAACCTAACCA
1 CAAAAAAAAACCTAACCA
126386077 CAAAATAAAAA
1 CAAAA-AAAAA
126386088 AAAACCAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.63
18 5 0.19
19 5 0.19
ACGTcount: A:0.70, C:0.24, G:0.00, T:0.07
Consensus pattern (18 bp):
CAAAAAAAAACCTAACCA
Found at i:126387292 original size:136 final size:135
Alignment explanation
Indices: 126387049--126387332 Score: 541
Period size: 136 Copynumber: 2.1 Consensus size: 135
126387039 TATTGGGCCT
**
126387049 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
126387114 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
126387179 TATGC
131 TATGC
126387184 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCA-ATTACAATAAACTGGGCCTT
126387249 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
65 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
126387314 ATATGC
130 ATATGC
126387320 AAGCCCATTTGGG
1 AAGCCCATTTGGG
126387333 GAGACTACTC
Statistics
Matches: 146, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 42 0.29
136 104 0.71
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (135 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
TATGC
Found at i:126387368 original size:21 final size:21
Alignment explanation
Indices: 126387339--126387386 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
126387329 TGGGGAGACT
*
126387339 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
126387360 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
126387381 ACTCCA
1 ACTCCA
126387387 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:126387616 original size:25 final size:27
Alignment explanation
Indices: 126387579--126387631 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
126387569 TCAAACATGC
126387579 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
126387605 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
126387631 A
1 A
126387632 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Done.