Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 410 of 433
Found at i:126389135 original size:26 final size:26
Alignment explanation
Indices: 126389099--126389207 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
126389089 CATGATATTC
126389099 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126389125 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126389151 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
126389177 TTATCATGGAACATTTACCT-ACCTA
1 TTATCATGAAACATTTACCTAACCCA
126389202 TTATCA
1 TTATCA
126389208 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 11 0.14
26 70 0.86
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126393152 original size:136 final size:135
Alignment explanation
Indices: 126392909--126393192 Score: 541
Period size: 136 Copynumber: 2.1 Consensus size: 135
126392899 TATTGGGCCT
**
126392909 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
126392974 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
66 GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
126393039 TATGC
131 TATGC
126393044 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCA-ATTACAATAAACTGGGCCTT
126393109 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
65 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
126393174 ATATGC
130 ATATGC
126393180 AAGCCCATTTGGG
1 AAGCCCATTTGGG
126393193 GAGACTACTC
Statistics
Matches: 146, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 42 0.29
136 104 0.71
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (135 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACA
TATGC
Found at i:126393228 original size:21 final size:21
Alignment explanation
Indices: 126393199--126393246 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
126393189 TGGGGAGACT
*
126393199 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
126393220 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
126393241 ACTCCA
1 ACTCCA
126393247 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:126393476 original size:25 final size:27
Alignment explanation
Indices: 126393439--126393491 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
126393429 TCAAACATGC
126393439 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
126393465 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
126393491 A
1 A
126393492 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:126395004 original size:26 final size:26
Alignment explanation
Indices: 126394968--126395076 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
126394958 CATGATATTC
126394968 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
126394994 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
126395020 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
126395046 TTATCATGGAACATTTACCT-ACCTA
1 TTATCATGAAACATTTACCTAACCCA
126395071 TTATCA
1 TTATCA
126395077 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
25 11 0.14
26 70 0.86
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:126395970 original size:39 final size:39
Alignment explanation
Indices: 126395898--126396010 Score: 108
Period size: 39 Copynumber: 2.9 Consensus size: 39
126395888 TTTATATGTA
* * *
126395898 TTATGTATATATTTTTTAATGCCATTAGTTATATATTTC
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
* *
126395937 TTATGTATATATTCTTAAATACTATTA--TATATATAT-
1 TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
* * *
126395973 ATATATATATATT-TTAAATACCATATTGTGTATATATT
1 TTATGTATATATTCTTAAATACCAT-TAGT-TATATATT
126396011 ATTATTACAA
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
35 10 0.17
36 12 0.20
37 8 0.13
39 30 0.50
ACGTcount: A:0.35, C:0.06, G:0.05, T:0.53
Consensus pattern (39 bp):
TTATGTATATATTCTTAAATACCATTAGTTATATATTTC
Found at i:126396159 original size:15 final size:15
Alignment explanation
Indices: 126396123--126396164 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
126396113 ATCATTATTT
126396123 TATATTATTTT-TGTA
1 TATATT-TTTTATGTA
126396138 -A-ATTTTTTATGTA
1 TATATTTTTTATGTA
126396151 TATATTTTTTATGT
1 TATATTTTTTATGT
126396165 GCGTTTCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
12 4 0.17
13 7 0.29
14 2 0.08
15 11 0.46
ACGTcount: A:0.26, C:0.00, G:0.07, T:0.67
Consensus pattern (15 bp):
TATATTTTTTATGTA
Found at i:126406608 original size:222 final size:223
Alignment explanation
Indices: 126406222--126407190 Score: 1362
Period size: 222 Copynumber: 4.3 Consensus size: 223
126406212 TTCTGTTTTC
126406222 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
126406287 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
66 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
* *
126406352 TTAAATTTCTGTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
131 TTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
126406417 AGGTATTTTCAATTTCTGTTTTTC-AAA
196 AGGTATTTTCAATTTCTGTTTTTCAAAA
**
126406444 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
* * *
126406509 TCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGGGGTATT
66 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
** * *
126406574 TTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-GGTTCACATG
131 TTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATG
*
126406638 CTGAGGTATTTTCAATTTCTGTCTTTCAAAA
193 CTGAGGTATTTTCAATTTCTGTTTTTCAAAA
** * *
126406669 AAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAAT
1 AAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAAT
126406734 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
65 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
* *
126406799 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCT
130 TTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCT
*
126406864 GAGGTATTTTCAATTTTTGTTTTTCAAAAA
195 GAGGTATTTTCAATTTCTGTTTTTC-AAAA
* ** *
126406894 AAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT-ATTTCCAAT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTT-CAAT
* * * *
126406958 TTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
65 TTCTG-TTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
* * **
126407023 TATTTTCAATTT-TTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC
127 TAATTTCAATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGAC
* * * *
126407087 ACGCTGAGGTAATTTCAATTTTTG-TTGTC----
190 ATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAA
* * *** * * *
126407116 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC-GG-GACACGCTGAGGTAATTTCAA
*
126407181 TTTCCGTTTT
64 TTTCTGTTTT
126407191 TCAATTTCTG
Statistics
Matches: 677, Mismatches: 54, Indels: 31
0.89 0.07 0.04
Matches are distributed among these distances:
221 1 0.00
222 210 0.31
223 8 0.01
224 134 0.20
225 29 0.04
226 170 0.25
227 64 0.09
228 61 0.09
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (223 bp):
AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
TTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
AGGTATTTTCAATTTCTGTTTTTCAAAA
Found at i:126406738 original size:80 final size:74
Alignment explanation
Indices: 126406212--126407190 Score: 1178
Period size: 72 Copynumber: 13.1 Consensus size: 74
126406202 ATGTTGTTAC
** *
126406212 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
126406277 AATTTCAAT
66 AATTTCAAT
* * *
126406286 TTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
*
126406349 AATTTAAAT
66 AATTTCAAT
*
126406358 TTCTGTTTTC--AAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
*
126406421 ATTTTCAAT
66 AATTTCAAT
** ** *
126406430 TTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
1 TTCTG-TTTTC---AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
126406495 AGGTAATTTCAAT
62 AGGTAATTTCAAT
* * * * *
126406508 TTCTGTTTTC--AAAATTCAACTCATATTACGAGAAATGAGTTGAGCCTCAAGACACGTTGGGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
*
126406571 ATTTTCAAT
66 AATTTCAAT
** * *
126406580 TTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-GGTTCACATGCTGA
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACATGCTGA
*
126406642 GGTATTTTCAAT
63 GGTAATTTCAAT
*
126406654 TTCTGTCTTTCAAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGT
1 TTCTGT-TTTC----AAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGC
126406719 TGAGGTAATTTCAAT
60 TGAGGTAATTTCAAT
* * *
126406734 TTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
126406797 AATTTCAAT
66 AATTTCAAT
* *
126406806 TTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
*
126406869 ATTTTCAAT
66 AATTTCAAT
* *
126406878 TTTTGTTTTTCAAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGC
1 TTCTG-TTTTC-----AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGC
126406943 TGAGGT-ATTTCCAAT
60 TGAGGTAATTT-CAAT
*
126406958 TTCTGTTTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
1 TTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
*
126407023 TATTTTCAAT
65 TAATTTCAAT
* ** *
126407033 TT-TTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGT
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
126407097 AATTTCAAT
66 AATTTCAAT
* * * * *** * * *
126407106 TTTTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
1 TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACATGCTGAG
*
126407171 GTATTTTCAAT
64 GTAATTTCAAT
*
126407182 TTCCGTTTT
1 TTCTGTTTT
126407191 TCAATTTCTG
Statistics
Matches: 803, Mismatches: 71, Indels: 60
0.86 0.08 0.06
Matches are distributed among these distances:
71 1 0.00
72 353 0.44
73 80 0.10
74 79 0.10
75 65 0.08
76 28 0.03
77 5 0.01
78 60 0.07
79 7 0.01
80 89 0.11
81 5 0.01
82 30 0.04
83 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (74 bp):
TTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGT
AATTTCAAT
Found at i:126407122 original size:448 final size:442
Alignment explanation
Indices: 126406222--126407190 Score: 1426
Period size: 448 Copynumber: 2.2 Consensus size: 442
126406212 TTCTGTTTTC
**
126406222 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
126406287 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
66 TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
126406352 TTAAATTTCTGTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
131 TTAAATTTCTGTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
**
126406417 AGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
196 AGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
** *
126406482 TCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATATTACGAGAAATGAG
261 TCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAATGAG
* *
126406547 TTGAGCCTCAAGACACGTTGGGGTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAG
326 TTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAG
* * * *
126406612 AGGTAAGTTGAGCCTCGGTTCACATGCTGAGGTATTTTCAATTTCTGTCTTTCAAAA
391 AGGTAAGTTGAGCCTCAG-T-ACACGCTGAGGTAATTTCAATTTCTGTCTGTC---A
* *
126406669 AAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTGAGGTAATTTCAAT
1 AAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAAT
126406734 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
65 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
* * *
126406799 TTTCAATTTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCT
130 TTTAAATTTCTGTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCT
* *
126406864 GAGGTATTTTCAATTTTTGTTTTTCAAAAAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGA
195 GAGGTATTTTCAATTTCTGTTTTTC--AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGA
* **
126406929 GCCTCAAGACATGCTGAGGT-ATTTCCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGTGAG
258 GCCTCAAGACACGCTGAGGTAATTT-CAATTTCTG-TTTTC--AAAAATCAACTCATATTACGAG
* *
126406993 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTT-TTTTTTCAAAAAAATCAACTCA
319 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTC--AAAAATCAACTCA
* *
126407057 TATTGCGAGAGGTGAGTTGAGCCTCAAG-ACACGCTGAGGTAATTTCAATTTTTGT-TGTC-
382 TATTGCGAGAGGTAAGTTGAGCCTC-AGTACACGCTGAGGTAATTTCAATTTCTGTCTGTCA
* * *** * * *
126407116 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGCTGAGGTAATTTCAA
*
126407181 TTTCCGTTTT
64 TTTCTGTTTT
126407191 TCAATTTCTG
Statistics
Matches: 472, Mismatches: 38, Indels: 23
0.89 0.07 0.04
Matches are distributed among these distances:
446 30 0.06
447 14 0.03
448 229 0.49
449 4 0.01
450 61 0.13
451 8 0.02
452 30 0.06
453 58 0.12
454 37 0.08
455 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (442 bp):
AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATT
TCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAAT
TTAAATTTCTGTTTTCAAAACTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTG
AGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC
TCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATATTACGAGAAATGAG
TTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAG
AGGTAAGTTGAGCCTCAGTACACGCTGAGGTAATTTCAATTTCTGTCTGTCA
Found at i:126407268 original size:92 final size:92
Alignment explanation
Indices: 126407116--126407286 Score: 236
Period size: 92 Copynumber: 1.9 Consensus size: 92
126407106 TTTTGTTGTC
* ** *
126407116 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
126407181 TTTCCGTTTTTCAATTTCTGCCTTTCA
66 TTTCCGTCTTTCAATTTCTGCCTTTCA
* * * *
126407208 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
*
126407272 ATTTCTGTCTTTCAA
65 ATTTCCGTCTTTCAA
126407287 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
91 2 0.03
92 66 0.97
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.32
Consensus pattern (92 bp):
AAAAAAATCAACTCATATTGCAAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCA
Found at i:126407339 original size:77 final size:76
Alignment explanation
Indices: 126407188--126407569 Score: 352
Period size: 79 Copynumber: 4.8 Consensus size: 76
126407178 CAATTTCCGT
** *
126407188 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCTC
126407253 ACGCGCTGAGCTA
64 ACGCGCTGAGCTA
* * *
126407266 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT-GGCTCA
* * *
126407331 CACACTGAGGTA
65 CGCGCTGAGCTA
* * * * * *
126407343 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTGGCT
* *
126407408 CACGTG-TCGAGGTA
63 CACGCGCT-GAGCTA
** * *
126407422 TTTTCAAAATCTTTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTC-AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
126407487 GCCTTGGCTCACGTGCTGAGCTA
55 G-CTTGGCTCACGCGCTGAGCTA
* *
126407510 TTTTCAATTTCTGTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTCAGCTT
1 TTTTCAATTTCTG--TTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTT
126407570 TTTAATTTCT
Statistics
Matches: 252, Mismatches: 33, Indels: 38
0.78 0.10 0.12
Matches are distributed among these distances:
76 3 0.01
77 63 0.25
78 24 0.10
79 92 0.37
80 2 0.01
88 59 0.23
89 3 0.01
90 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (76 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTGGCTCAC
GCGCTGAGCTA
Found at i:126407527 original size:88 final size:88
Alignment explanation
Indices: 126407366--126407527 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
126407356 TATTTTTCAA
* * *
126407366 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACGTGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACGTGTCGAGCTATTTTCAAAA
*
126407431 TCTTTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * *
126407454 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACGTGTC-GAGCTATTTTCAAA
*
126407518 TTCTGTTTTT
65 ATCTGTTTTT
126407528 TTCAAAAAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
87 1 0.02
88 64 0.98
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACGTGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:126407585 original size:30 final size:30
Alignment explanation
Indices: 126407549--126407610 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
126407539 CAACTCATAT
126407549 TGCGAGAGGTGAGTTCAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTCAGTC-TTTTAATTTC
* *
126407579 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTCAGTCTTTTAATTTC
126407609 TG
1 TG
126407611 TTTTTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.11, G:0.27, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTCAGTCTTTTAATTTC
Found at i:126407711 original size:251 final size:246
Alignment explanation
Indices: 126406964--126407778 Score: 790
Period size: 251 Copynumber: 3.3 Consensus size: 246
126406954 CAATTTCTGT
* ** ** ** *
126406964 TTTTCAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTAT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACGCGCTGAGCTAT
* * *
126407026 TTTCAA--T-T-TTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-G
64 TTTCAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCTTCAGATC
* * * ** * *
126407085 ACACGCTGAGGTA--ATTTCAATTT-T-TGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGA
129 ACACACTGAGGTATCTTTTCAATTTATAT-TTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* *** * ** * * * **
126407146 GTTGAGCCT-CAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTG
192 GTTGAACCTCCA-GTCACATATCGAGGTATTTTAAAAATCTGCTTTTCAAATTAAG
* *
126407201 CCTTTCAAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
1 -TTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
* *
126407266 TTTTCAATTTCTG--TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
63 TTTTCAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCTTCAGAT
* *
126407329 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
128 CACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * ** **
126407394 GTTGAGCCTCGGGTCACGTGTCGAGGTATTTTCAAAATCTTTTTTTCAAATTCTG
192 GTTGAACCTCCAGTCACATATCGAGGTATTTTAAAAATCTGCTTTTCAAATTAAG
* *
126407449 TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
* *
126407513 TCAATTTCTGTTTTTTTCAAAAAATTCAACTCATATTGCGAGAGGTGAGTTCAGCTTTTTA-ATT
66 TCAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGC--TTCAGA--
* * * * * * *
126407577 TCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGA
127 TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGA
*
126407640 GGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTAAAAATCTGCTTTTCAAGTTAAG
187 GGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTAAAAATCTGCTTTTCAAATTAAG
*
126407700 -TTTCAAAAAATCAACTCATATTGCGATAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
126407764 TCAATTTCTGTTTTT
66 TCAATTTCTGTTTTT
126407779 AATGTCTGTT
Statistics
Matches: 488, Mismatches: 62, Indels: 41
0.83 0.10 0.07
Matches are distributed among these distances:
238 4 0.01
239 34 0.07
240 1 0.00
241 17 0.03
242 1 0.00
243 46 0.09
244 68 0.14
245 12 0.02
246 40 0.08
247 14 0.03
248 77 0.16
249 3 0.01
250 5 0.01
251 143 0.29
252 5 0.01
253 13 0.03
254 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (246 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTT
TCAATTTCTGTTTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTCAGCTTCAGATCAC
ACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTG
AACCTCCAGTCACATATCGAGGTATTTTAAAAATCTGCTTTTCAAATTAAG
Found at i:126408455 original size:18 final size:18
Alignment explanation
Indices: 126408432--126408478 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
126408422 TTAAGCCCCC
126408432 AAAAAAAAACCTAACCCA
1 AAAAAAAAACCTAACCCA
*
126408450 AAAAAAAAACCTAACCCC
1 AAAAAAAAACCTAACCCA
126408468 AAAAAAAAACC
1 AAAAAAAAACC
126408479 AAGAAACCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.68, C:0.28, G:0.00, T:0.04
Consensus pattern (18 bp):
AAAAAAAAACCTAACCCA
Found at i:126409474 original size:2 final size:2
Alignment explanation
Indices: 126409462--126409497 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
126409452 TTTTATGTAC
*
126409462 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126409498 TTTTGTACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126411941 original size:27 final size:29
Alignment explanation
Indices: 126411878--126411941 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 29
126411868 AGTAAACAGG
* *
126411878 TAATTTCATCATTTTTAAACGACTAAATTA
1 TAATTTTATCATTTTT-AACGACTAAAGTA
126411908 -AATTTTTATCATTTTT-A-GACTAAAGTA
1 TAA-TTTTATCATTTTTAACGACTAAAGTA
126411935 TAATTTT
1 TAATTTT
126411942 GCCATTACTA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
27 13 0.43
28 3 0.10
29 2 0.07
30 12 0.40
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (29 bp):
TAATTTTATCATTTTTAACGACTAAAGTA
Found at i:126420711 original size:15 final size:15
Alignment explanation
Indices: 126420693--126420721 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
126420683 TAATATAATA
126420693 TAATAATATACAATT
1 TAATAATATACAATT
126420708 TAATAATATACAAT
1 TAATAATATACAAT
126420722 ATACAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (15 bp):
TAATAATATACAATT
Found at i:126421713 original size:8 final size:10
Alignment explanation
Indices: 126421686--126421712 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
126421676 GAATGTACTT
126421686 TTATATATAG
1 TTATATATAG
126421696 TTATATATAG
1 TTATATATAG
126421706 TTATATA
1 TTATATA
126421713 GAAAACAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (10 bp):
TTATATATAG
Found at i:126434691 original size:16 final size:17
Alignment explanation
Indices: 126434670--126434703 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
126434660 ATTCTATTAT
126434670 ATATAATTTAAT-TTTA
1 ATATAATTTAATATTTA
126434686 ATATAATTTAATATTTA
1 ATATAATTTAATATTTA
126434703 A
1 A
126434704 ACTTTTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATAATTTAATATTTA
Found at i:126434765 original size:18 final size:19
Alignment explanation
Indices: 126434725--126434766 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
126434715 ATCATTAGTT
*
126434725 AATTTAAATACTTCATTTT
1 AATTTAAATACTTCATTTG
* *
126434744 AATTTAAAT-GTTTATTTG
1 AATTTAAATACTTCATTTG
126434762 AATTT
1 AATTT
126434767 TTTAAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55
Consensus pattern (19 bp):
AATTTAAATACTTCATTTG
Found at i:126440523 original size:42 final size:41
Alignment explanation
Indices: 126440464--126440543 Score: 151
Period size: 42 Copynumber: 1.9 Consensus size: 41
126440454 CTTAAATGAA
126440464 TAATTGATTCTCACACTGTAGCTATTTTTTTTTCCTTTGCTT
1 TAATTGATTCTCACACTGTAGCTATTTTTTTTT-CTTTGCTT
126440506 TAATTGATTCTCACACTGTAGCTATTTTTTTTTCTTTG
1 TAATTGATTCTCACACTGTAGCTATTTTTTTTTCTTTG
126440544 GTTCTTTGTC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
41 5 0.13
42 33 0.87
ACGTcount: A:0.17, C:0.17, G:0.10, T:0.55
Consensus pattern (41 bp):
TAATTGATTCTCACACTGTAGCTATTTTTTTTTCTTTGCTT
Found at i:126447159 original size:15 final size:17
Alignment explanation
Indices: 126447126--126447171 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
126447116 AAAAAAACAT
126447126 TTTTTTATTGTATAATA
1 TTTTTTATTGTATAATA
*
126447143 TTTTTTATT-TA-ATTA
1 TTTTTTATTGTATAATA
*
126447158 -TTTTTATTATATAA
1 TTTTTTATTGTATAA
126447172 AATTATGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 8 0.32
15 5 0.20
16 3 0.12
17 9 0.36
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTTTTATTGTATAATA
Found at i:126452701 original size:9 final size:10
Alignment explanation
Indices: 126452675--126452728 Score: 78
Period size: 9 Copynumber: 5.7 Consensus size: 10
126452665 ACCGAGTTCG
*
126452675 ATTATAAATT
1 ATTAAAAATT
126452685 ATTAAAAATT
1 ATTAAAAATT
126452695 A-TAAAAATT
1 ATTAAAAATT
126452704 ATTAAAAA-T
1 ATTAAAAATT
126452713 ATTAAAAATT
1 ATTAAAAATT
126452723 A-TAAAA
1 ATTAAAA
126452729 TTTGATTCAA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
9 23 0.56
10 18 0.44
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAAATT
Found at i:126452704 original size:19 final size:19
Alignment explanation
Indices: 126452675--126452728 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
126452665 ACCGAGTTCG
*
126452675 ATTATAAATTATTAAAAAT
1 ATTAAAAATTATTAAAAAT
126452694 -TATAAAAATTATTAAAAAT
1 AT-TAAAAATTATTAAAAAT
126452713 ATTAAAAATTA-TAAAA
1 ATTAAAAATTATTAAAA
126452729 TTTGATTCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
18 6 0.19
19 25 0.78
20 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATTAAAAATTATTAAAAAT
Found at i:126452740 original size:18 final size:18
Alignment explanation
Indices: 126452719--126452753 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
126452709 AAATATTAAA
*
126452719 AATTATAAAATTTGATTC
1 AATTATAAAATTAGATTC
126452737 AATTATAAAATTAGATT
1 AATTATAAAATTAGATT
126452754 TTAAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (18 bp):
AATTATAAAATTAGATTC
Found at i:126453418 original size:11 final size:12
Alignment explanation
Indices: 126453398--126453423 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
126453388 AGATTTTAAA
126453398 TTTTCTTTTTTT
1 TTTTCTTTTTTT
126453410 TTTTCTTTTTTT
1 TTTTCTTTTTTT
126453422 TT
1 TT
126453424 AACGATGATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:126455414 original size:42 final size:42
Alignment explanation
Indices: 126455368--126455450 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
126455358 CTTTGAAATA
*
126455368 TCAATAATAATTAAGCATCACCATCATAATAATAACACATAT
1 TCAATAATAATTAAGCATCACCATCATAATAACAACACATAT
*
126455410 TCAATAATGATTAAGCATCACCATCATAATAACAACACATA
1 TCAATAATAATTAAGCATCACCATCATAATAACAACACATA
126455451 AATATGCTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (42 bp):
TCAATAATAATTAAGCATCACCATCATAATAACAACACATAT
Found at i:126457535 original size:2 final size:2
Alignment explanation
Indices: 126457528--126457555 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
126457518 TTAATATGGA
126457528 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126457556 GATAAATGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126460149 original size:2 final size:2
Alignment explanation
Indices: 126460142--126460174 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
126460132 TAATAAACAA
126460142 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126460175 GCATGTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126460650 original size:13 final size:12
Alignment explanation
Indices: 126460627--126460658 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
126460617 AAATTTATAT
126460627 ATTTTAAAAAAA
1 ATTTTAAAAAAA
126460639 ATTTTAAAAAAA
1 ATTTTAAAAAAA
*
126460651 ATTCTAAA
1 ATTTTAAA
126460659 GAATATACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (12 bp):
ATTTTAAAAAAA
Found at i:126463009 original size:21 final size:21
Alignment explanation
Indices: 126462908--126462999 Score: 166
Period size: 21 Copynumber: 4.4 Consensus size: 21
126462898 GACACATAAA
* *
126462908 GTGCCTAAAACGACACACGAG
1 GTGCCTGATACGACACACGAG
126462929 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
126462950 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
126462971 GTGCCTGATACGACACACGAG
1 GTGCCTGATACGACACACGAG
126462992 GTGCCTGA
1 GTGCCTGA
126463000 AATACAACAC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 69 1.00
ACGTcount: A:0.29, C:0.28, G:0.28, T:0.14
Consensus pattern (21 bp):
GTGCCTGATACGACACACGAG
Found at i:126463419 original size:15 final size:15
Alignment explanation
Indices: 126463394--126463451 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
126463384 TCATATATAT
126463394 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
126463410 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
126463425 AATAATTTCAATCAA
1 TATAAATTCAATCAA
126463440 TATAAATTCAAT
1 TATAAATTCAAT
126463452 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:126465728 original size:13 final size:13
Alignment explanation
Indices: 126465712--126465737 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
126465702 AATTATTAAA
126465712 AATATTTATGAGC
1 AATATTTATGAGC
126465725 AATATTTATGAGC
1 AATATTTATGAGC
126465738 CTAGTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
AATATTTATGAGC
Found at i:126466039 original size:15 final size:16
Alignment explanation
Indices: 126466010--126466047 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
126466000 GTAGTATTAT
126466010 TAAATAAATTATATAG
1 TAAATAAATTATATAG
*
126466026 TAAAT-AATTGTATAG
1 TAAATAAATTATATAG
126466041 T-AATAAA
1 TAAATAAA
126466048 AATATACATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 12 0.60
16 5 0.25
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (16 bp):
TAAATAAATTATATAG
Found at i:126467439 original size:25 final size:25
Alignment explanation
Indices: 126467418--126467464 Score: 73
Period size: 23 Copynumber: 2.0 Consensus size: 25
126467408 TGAATTGAAA
126467418 ATTG-ATTGAAAA-GTG-GAAATTG
1 ATTGAATTGAAAATGTGAGAAATTG
126467440 ATTGAATTGAAAATGTGAGAAATTG
1 ATTGAATTGAAAATGTGAGAAATTG
126467465 CGGCTGAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.18
23 8 0.36
24 3 0.14
25 7 0.32
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.32
Consensus pattern (25 bp):
ATTGAATTGAAAATGTGAGAAATTG
Found at i:126467676 original size:37 final size:38
Alignment explanation
Indices: 126467607--126467678 Score: 92
Period size: 38 Copynumber: 1.9 Consensus size: 38
126467597 GGGTGTCACT
** **
126467607 ATTTTACTTCGGATAGATTCGATGAGGTACTGGGTACC
1 ATTTTACTTCGGATAGAGCCGATGAGACACTGGGTACC
*
126467645 ATTTTACTTCGGCTAG-GCCGATGAGACACTGGGT
1 ATTTTACTTCGGATAGAGCCGATGAGACACTGGGT
126467679 GTCAACTTTG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 14 0.48
38 15 0.52
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (38 bp):
ATTTTACTTCGGATAGAGCCGATGAGACACTGGGTACC
Found at i:126471196 original size:2 final size:2
Alignment explanation
Indices: 126471191--126471223 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
126471181 ATAATAAAAA
126471191 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126471224 GCATGTATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126474411 original size:16 final size:16
Alignment explanation
Indices: 126474372--126474415 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
126474362 CGTAAAAATA
*
126474372 ATAAA-AATAAGATTTT
1 ATAAATAATAA-ATATT
*
126474388 AAAAATAATAAATATT
1 ATAAATAATAAATATT
126474404 ATAAATAATAAA
1 ATAAATAATAAA
126474416 ATTTTTATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
ATAAATAATAAATATT
Found at i:126475980 original size:26 final size:25
Alignment explanation
Indices: 126475951--126476017 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 25
126475941 CAAAATGAAA
126475951 ATTTATT-TTTTTACAAATACTATATT
1 ATTTATTATTTTTA-AAAT-CTATATT
*
126475977 ATTTATATATTTTTAAAATTTATATT
1 ATTTAT-TATTTTTAAAATCTATATT
*
126476003 TTTTATTATTTTTAA
1 ATTTATTATTTTTAA
126476018 CCGTGTTTAG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
25 9 0.24
26 17 0.46
27 5 0.14
28 6 0.16
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (25 bp):
ATTTATTATTTTTAAAATCTATATT
Found at i:126480458 original size:78 final size:80
Alignment explanation
Indices: 126480364--126480510 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
126480354 TATAAACTGA
* * * *
126480364 AAAAACAGAAATTGAAAATACCTC-A-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAACACGTGAGCC-AAAGCTCAACTCACCTCTCGCAATATGA
126480426 GTTGAAAACAGACCTT
65 GTTGAAAACAGACCTT
* * * *
126480442 AAAAACGGAAATTGAAAGTAGCTCAACACGTGAGCCAAAGCTCAGCTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAACACGTGAGCCAAAGCTCAACTCACCTCTCGCAATATGAG
126480507 TTGA
66 TTGA
126480511 TTTTTGAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
78 21 0.36
79 1 0.02
80 34 0.59
81 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (80 bp):
AAAAACAGAAATTGAAAATACCTCAACACGTGAGCCAAAGCTCAACTCACCTCTCGCAATATGAG
TTGAAAACAGACCTT
Found at i:126480616 original size:54 final size:54
Alignment explanation
Indices: 126480552--126480660 Score: 184
Period size: 54 Copynumber: 2.0 Consensus size: 54
126480542 ATATGTCTCG
126480552 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT-AAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTGAAA
* *
126480606 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAATAAAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAA
126480660 A
1 A
126480661 TACCTCAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
53 17 0.33
54 35 0.67
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAA
Found at i:126480661 original size:126 final size:127
Alignment explanation
Indices: 126480487--126480732 Score: 449
Period size: 126 Copynumber: 1.9 Consensus size: 127
126480477 CAAAGCTCAG
126480487 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAACTGAAAATACCTCAATATGTCTCG
1 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAACTGAAAATACCTCAATATGTCTCG
126480552 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAA
66 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAA
* *
126480614 CTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAATAAAAATTGAAAATACCTCAATATGTTTCG
1 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAACTGAAAATACCTCAATATGTCTCG
* *
126480678 AGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGAAAAACAGAAATTAAAA
66 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAA
126480733 CATCAAAATA
Statistics
Matches: 115, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
126 91 0.79
127 24 0.21
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (127 bp):
CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAACTGAAAATACCTCAATATGTCTCG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAA
Found at i:126489065 original size:4 final size:4
Alignment explanation
Indices: 126489007--126489046 Score: 80
Period size: 4 Copynumber: 10.0 Consensus size: 4
126488997 TGGGATATGC
126489007 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG
126489047 CATAAATGTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (4 bp):
AATG
Found at i:126492823 original size:2 final size:2
Alignment explanation
Indices: 126492816--126492841 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
126492806 ATAGTTAAAA
126492816 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
126492842 GTATTTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:126493284 original size:16 final size:17
Alignment explanation
Indices: 126493253--126493284 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
126493243 ATAAAAATCT
126493253 ATTCGTACACTATATAG
1 ATTCGTACACTATATAG
126493270 ATTCGTACA-TATATA
1 ATTCGTACACTATATA
126493285 ATGATGTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (17 bp):
ATTCGTACACTATATAG
Found at i:126498358 original size:2 final size:2
Alignment explanation
Indices: 126498351--126498396 Score: 60
Period size: 2 Copynumber: 24.0 Consensus size: 2
126498341 AATTATTTTC
* *
126498351 AT AT AT AT AT -T TT GT AT -T AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126498391 AT AT AT
1 AT AT AT
126498397 GAAAAATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (2 bp):
AT
Found at i:126499316 original size:41 final size:41
Alignment explanation
Indices: 126499259--126499341 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
126499249 AAAAAAAACC
126499259 TAAAATATATTTTAAAATAGTTAAATTGGTTGAATTATAAA
1 TAAAATATATTTTAAAATAGTTAAATTGGTTGAATTATAAA
126499300 TAAAATATATTTTAAAATAGTTAAATTGGTTGAATTATAAA
1 TAAAATATATTTTAAAATAGTTAAATTGGTTGAATTATAAA
126499341 T
1 T
126499342 TTTCAATGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (41 bp):
TAAAATATATTTTAAAATAGTTAAATTGGTTGAATTATAAA
Found at i:126502148 original size:22 final size:22
Alignment explanation
Indices: 126502122--126502168 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
126502112 AGTTATTTAA
126502122 TTATAAAGGTTATATTTGTAAG
1 TTATAAAGGTTATATTTGTAAG
126502144 TTATAAAGGTTATATTTGTAAG
1 TTATAAAGGTTATATTTGTAAG
126502166 TTA
1 TTA
126502169 ATTAATATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (22 bp):
TTATAAAGGTTATATTTGTAAG
Found at i:126503088 original size:45 final size:45
Alignment explanation
Indices: 126503027--126503429 Score: 510
Period size: 45 Copynumber: 9.0 Consensus size: 45
126503017 TAGGATTCCG
* * *
126503027 ATATGTGCTCTCGTGTAAGACCACGCCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * * * *
126503072 ATATGTTTTTTGGTGTAAAACCACGTTTAGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
** * *
126503117 ATATGTGTTTTCGTGTAAGACCAAATTTGGGACATTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
126503162 ATATGTGTTTTCGTGTAAGACCACGTCTGGGATGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* * *
126503207 ATATGTGTTTTCGTGTAAGACCATGTCTAGGATGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
**
126503252 ATATGTGTTTTCGTGTAAGATTACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
*
126503297 ATATGTGTTTTCGTGTAAGATCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* ** * * *
126503342 ATATGTGGTGACGTGTAAGACCATGTCTGGGACATCGGCATCG-T
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
* **
126503386 AT-T-TG-ATTCGTGTAAGACCTTGTCTGGGACAG-TGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGAC-GTTGGCATCGAT
126503428 AT
1 AT
126503430 GAGATAGCAT
Statistics
Matches: 315, Mismatches: 41, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
41 28 0.09
42 5 0.02
43 1 0.00
44 3 0.01
45 278 0.88
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGAT
Found at i:126503809 original size:2 final size:2
Alignment explanation
Indices: 126503802--126503833 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
126503792 TACATTGTTA
*
126503802 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126503834 GTATGTATTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:126504697 original size:3 final size:3
Alignment explanation
Indices: 126504691--126504717 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
126504681 ATCTCAAAAT
126504691 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
126504718 CGCAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:126505081 original size:30 final size:29
Alignment explanation
Indices: 126505023--126505079 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
126505013 TTAGGCGGCC
*
126505023 ATGTGTTTGATAAACTATTTAAAATTTTAA
1 ATGTGTTTGATAAAC-ATATAAAATTTTAA
126505053 ATGTGTTTGATAATA-ATATAAAATTTT
1 ATGTGTTTGATAA-ACATATAAAATTTT
126505080 TACCAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 11 0.44
30 13 0.52
31 1 0.04
ACGTcount: A:0.40, C:0.02, G:0.11, T:0.47
Consensus pattern (29 bp):
ATGTGTTTGATAAACATATAAAATTTTAA
Found at i:126505992 original size:23 final size:24
Alignment explanation
Indices: 126505946--126505994 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
126505936 AATTAAAAAT
*
126505946 ATTTAAATTTTACAGTTTATTATA
1 ATTTAAATTTTACAGTGTATTATA
126505970 ATTT-AATTTTACTAGTGTATATATA
1 ATTTAAATTTTAC-AGTGTAT-TATA
126505995 TATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 10 0.45
25 4 0.18
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.53
Consensus pattern (24 bp):
ATTTAAATTTTACAGTGTATTATA
Found at i:126512043 original size:20 final size:20
Alignment explanation
Indices: 126511994--126512097 Score: 93
Period size: 20 Copynumber: 5.1 Consensus size: 20
126511984 CATTACTGCA
126511994 TTGAATCGATTATTTATTGTT
1 TTGAATCGATTATTTATTG-T
* * * *
126512015 TTGACTCGACTCTTTGTTGT
1 TTGAATCGATTATTTATTGT
*
126512035 TTGAATCGATTGTTTATTGT
1 TTGAATCGATTATTTATTGT
*
126512055 TTGAATTGATTCA-TTATTGTT
1 TTGAATCGATT-ATTTATTG-T
* * *
126512076 TTAAATCAATTATTTTTTGT
1 TTGAATCGATTATTTATTGT
126512096 TT
1 TT
126512098 AACTTGATTC
Statistics
Matches: 66, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
20 37 0.56
21 29 0.44
ACGTcount: A:0.21, C:0.08, G:0.14, T:0.57
Consensus pattern (20 bp):
TTGAATCGATTATTTATTGT
Found at i:126513162 original size:21 final size:21
Alignment explanation
Indices: 126513136--126513185 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
126513126 AGATAAAATG
*
126513136 GTTTTTCCTGTAAAGATC-CAA
1 GTTTTTCCTATAAA-ATCTCAA
*
126513157 GTTTTT-CTATAAAATCTCAT
1 GTTTTTCCTATAAAATCTCAA
126513177 GTTTTTCCT
1 GTTTTTCCT
126513186 TTTACTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 8 0.32
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.48
Consensus pattern (21 bp):
GTTTTTCCTATAAAATCTCAA
Found at i:126515236 original size:11 final size:11
Alignment explanation
Indices: 126515220--126515250 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
126515210 GTAATGTTAA
126515220 AATATATACAT
1 AATATATACAT
126515231 AATATATACAT
1 AATATATACAT
126515242 ATATATATA
1 A-ATATATA
126515251 TGAAGTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (11 bp):
AATATATACAT
Found at i:126515880 original size:14 final size:14
Alignment explanation
Indices: 126515863--126515904 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
126515853 TATATATACA
126515863 TAAATAATAATAAG
1 TAAATAATAATAAG
126515877 TAAATAATAAATATAG
1 TAAATAAT-AATA-AG
*
126515893 TGAA-AATAATAA
1 TAAATAATAATAA
126515905 ATATAAAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 7 0.28
16 5 0.20
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.29
Consensus pattern (14 bp):
TAAATAATAATAAG
Found at i:126515925 original size:18 final size:18
Alignment explanation
Indices: 126515864--126515927 Score: 53
Period size: 18 Copynumber: 3.6 Consensus size: 18
126515854 ATATATACAT
*
126515864 AAATAATA-ATAAGTAAA
1 AAATAATATAAAAGTAAA
* *
126515881 TAATAA-AT-ATAGTGAAA
1 AAATAATATAAAAGT-AAA
126515898 ATAATAAATATAAAAGTAAA
1 A-AAT-AATATAAAAGTAAA
126515918 AAATAATATA
1 AAATAATATA
126515928 TAAACAAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 11
0.69 0.10 0.21
Matches are distributed among these distances:
16 4 0.11
17 8 0.22
18 9 0.25
19 5 0.14
20 6 0.17
21 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (18 bp):
AAATAATATAAAAGTAAA
Found at i:126516972 original size:16 final size:16
Alignment explanation
Indices: 126516948--126516981 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
126516938 TTTAATCCTT
*
126516948 TTTAGTTATTTTACTA
1 TTTAATTATTTTACTA
*
126516964 TTTAATTATTTTAGTA
1 TTTAATTATTTTACTA
126516980 TT
1 TT
126516982 ATTATTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTAATTATTTTACTA
Found at i:126517077 original size:20 final size:21
Alignment explanation
Indices: 126517039--126517078 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
126517029 TTCTAATATG
126517039 TATATATATATTATGTGTATTC
1 TATATATATATTA-GTGTATTC
126517061 TATATATATATTA-TGTAT
1 TATATATATATTAGTGTAT
126517079 ATATTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
22 13 0.72
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (21 bp):
TATATATATATTAGTGTATTC
Found at i:126517171 original size:2 final size:2
Alignment explanation
Indices: 126517160--126517196 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
126517150 ATATTCTTAA
126517160 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
126517197 TTTAATACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:126517231 original size:3 final size:3
Alignment explanation
Indices: 126517218--126517255 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
126517208 ATTGTGTATA
126517218 TAT TAAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
126517256 GTATTAGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:126517639 original size:22 final size:20
Alignment explanation
Indices: 126517591--126517640 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
126517581 TATTATTACC
126517591 TATTATTTTTTTATATTATT
1 TATTATTTTTTTATATTATT
* *
126517611 AAGTTATATTTTTTATATTCTTT
1 TA-TTAT-TTTTTTATATT-ATT
126517634 TATTATT
1 TATTATT
126517641 ATCATTATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
20 1 0.04
21 5 0.21
22 15 0.62
23 3 0.12
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (20 bp):
TATTATTTTTTTATATTATT
Found at i:126519499 original size:16 final size:15
Alignment explanation
Indices: 126519475--126519509 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
126519465 AAATAAACTT
*
126519475 GAAAGAAAAAGAAAAA
1 GAAAAAAAAAG-AAAA
126519491 GAAAAAAAAAGAAAA
1 GAAAAAAAAAGAAAA
126519506 GAAA
1 GAAA
126519510 TCGAAAACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAAGAAAA
Found at i:126521406 original size:15 final size:15
Alignment explanation
Indices: 126521386--126521414 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
126521376 GAAATAAAGG
126521386 AAAGAAACAGAATGA
1 AAAGAAACAGAATGA
126521401 AAAGAAACAGAATG
1 AAAGAAACAGAATG
126521415 TGGAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.66, C:0.07, G:0.21, T:0.07
Consensus pattern (15 bp):
AAAGAAACAGAATGA
Found at i:126521425 original size:18 final size:15
Alignment explanation
Indices: 126521384--126521429 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
126521374 AGGAAATAAA
126521384 GGAAAGAAACAGAAT
1 GGAAAGAAACAGAAT
*
126521399 GAAAAGAAACAGAATGT
1 GGAAAGAAACAGAA--T
126521416 GGAAATGAAACAGA
1 GGAAA-GAAACAGA
126521430 GAAGAAATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 13 0.50
17 5 0.19
18 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.26, T:0.09
Consensus pattern (15 bp):
GGAAAGAAACAGAAT
Found at i:126521757 original size:15 final size:15
Alignment explanation
Indices: 126521715--126521765 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
126521705 TGAATTTATC
126521715 AAATTTATATTGATT
1 AAATTTATATTGATT
* * *
126521730 AAAATCATTTTGATT
1 AAATTTATATTGATT
126521745 AAATTTATATTGATT
1 AAATTTATATTGATT
126521760 GAAATT
1 -AAATT
126521766 ATAATATATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
15 24 0.83
16 5 0.17
ACGTcount: A:0.41, C:0.02, G:0.08, T:0.49
Consensus pattern (15 bp):
AAATTTATATTGATT
Found at i:126521776 original size:2 final size:2
Alignment explanation
Indices: 126521765--126521794 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
126521755 TGATTGAAAT
126521765 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
126521795 GATCTATGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:126522313 original size:23 final size:23
Alignment explanation
Indices: 126522280--126522359 Score: 124
Period size: 23 Copynumber: 3.5 Consensus size: 23
126522270 TAATATTCCG
*
126522280 GGTGTGCTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
* **
126522303 AGTGTGTTTGGGTTAAATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
126522326 GGTGTGTTTGGGTTGGATATTCT
1 GGTGTGTTTGGGTTGGATATTCT
126522349 GGTGTGTTTGG
1 GGTGTGTTTGG
126522360 AAGGAATCCG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.11, C:0.05, G:0.38, T:0.46
Consensus pattern (23 bp):
GGTGTGTTTGGGTTGGATATTCT
Found at i:126522339 original size:46 final size:47
Alignment explanation
Indices: 126522271--126522359 Score: 144
Period size: 46 Copynumber: 1.9 Consensus size: 47
126522261 GAGGATTTAT
126522271 AATATTCCGGGTGTGCTTGGGTTGGATATTCTAGTGTGTTTGGGTTA
1 AATATTCCGGGTGTGCTTGGGTTGGATATTCTAGTGTGTTTGGGTTA
* * *
126522318 AATATT-CTGGTGTGTTTGGGTTGGATATTCTGGTGTGTTTGG
1 AATATTCCGGGTGTGCTTGGGTTGGATATTCTAGTGTGTTTGG
126522360 AAGGAATCCG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
46 33 0.85
47 6 0.15
ACGTcount: A:0.13, C:0.07, G:0.35, T:0.45
Consensus pattern (47 bp):
AATATTCCGGGTGTGCTTGGGTTGGATATTCTAGTGTGTTTGGGTTA
Found at i:126522486 original size:18 final size:19
Alignment explanation
Indices: 126522465--126522505 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
126522455 AATGAAATGA
126522465 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
126522483 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
126522502 GAAA
1 GAAA
126522506 ATATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:126528311 original size:30 final size:30
Alignment explanation
Indices: 126528277--126528339 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
126528267 ATTTATTTTA
126528277 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
126528307 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
126528337 TTG
1 TTG
126528340 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:126528765 original size:17 final size:18
Alignment explanation
Indices: 126528734--126528767 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
126528724 TTTTAAAAAT
*
126528734 TATAAAATTATAAATTAG
1 TATAAAAATATAAATTAG
126528752 TATAAAAATA-AAATTA
1 TATAAAAATATAAATTA
126528768 TTTTAAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (18 bp):
TATAAAAATATAAATTAG
Found at i:126528931 original size:20 final size:20
Alignment explanation
Indices: 126528906--126528946 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
126528896 AATAAATCTT
**
126528906 TTTTAAATAATGATAATTAA
1 TTTTAAATAAAAATAATTAA
126528926 TTTTAAATAAAAATAATTAA
1 TTTTAAATAAAAATAATTAA
126528946 T
1 T
126528947 GAATTAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TTTTAAATAAAAATAATTAA
Found at i:126538658 original size:64 final size:64
Alignment explanation
Indices: 126538557--126538683 Score: 245
Period size: 64 Copynumber: 2.0 Consensus size: 64
126538547 GGCATGGCCC
*
126538557 CCAAAAATAAAACTAGGTCCCGTAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATTT
1 CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATTT
126538621 CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATT
1 CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATT
126538684 CTTGATAAAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.36
Consensus pattern (64 bp):
CCAAAAATAAAACTAGGTCCCGCAATATTTTTTTAGTATTAAAAATAATATTAAAAAATTATTT
Found at i:126540358 original size:42 final size:42
Alignment explanation
Indices: 126540311--126540407 Score: 176
Period size: 42 Copynumber: 2.3 Consensus size: 42
126540301 CGGGCGAGAG
* *
126540311 ACACGGGCGTGTGTCTAAGCTGTGTGAGACACATAGGTAGTC
1 ACACGGACGTGTGTCTAAGCTGTGTGAGACACATAGGTAGAC
126540353 ACACGGACGTGTGTCTAAGCTGTGTGAGACACATAGGTAGAC
1 ACACGGACGTGTGTCTAAGCTGTGTGAGACACATAGGTAGAC
126540395 ACACGGACGTGTG
1 ACACGGACGTGTG
126540408 GTCGGTCATG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.22
Consensus pattern (42 bp):
ACACGGACGTGTGTCTAAGCTGTGTGAGACACATAGGTAGAC
Found at i:126542709 original size:20 final size:20
Alignment explanation
Indices: 126542684--126542740 Score: 73
Period size: 19 Copynumber: 2.9 Consensus size: 20
126542674 CTTTTACTAA
126542684 AAAAAATTAAAATTAATTCT
1 AAAAAATTAAAATTAATTCT
*
126542704 AAAAAA-TAAAATTAATTTT
1 AAAAAATTAAAATTAATTCT
*
126542723 TAAAAATATAAAA-TAATT
1 AAAAAAT-TAAAATTAATT
126542741 GATCAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 17 0.52
20 11 0.33
21 5 0.15
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAAAATTAAAATTAATTCT
Found at i:126542713 original size:19 final size:19
Alignment explanation
Indices: 126542684--126542740 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
126542674 CTTTTACTAA
126542684 AAAAAATTAAAATTAATTCT
1 AAAAAA-TAAAATTAATTCT
*
126542704 AAAAAATAAAATTAATTTTT
1 AAAAAATAAAATTAA-TTCT
126542724 AAAAATATAAAA-TAATT
1 AAAAA-ATAAAATTAATT
126542741 GATCAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
19 11 0.32
20 17 0.50
21 6 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAAATAAAATTAATTCT
Found at i:126555512 original size:46 final size:46
Alignment explanation
Indices: 126555445--126555745 Score: 386
Period size: 46 Copynumber: 6.7 Consensus size: 46
126555435 ATGCAACCTG
*
126555445 TGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
126555491 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T---A
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
126555529 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACTTGTTATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
126555575 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* * *
126555621 TGTGTAAGACCATGGTTGAAAGATGCCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
126555667 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
126555713 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
126555746 TCACGTCAAA
Statistics
Matches: 227, Mismatches: 19, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
38 36 0.16
41 1 0.00
43 1 0.00
45 1 0.00
46 188 0.83
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:126555543 original size:84 final size:84
Alignment explanation
Indices: 126555398--126555701 Score: 432
Period size: 84 Copynumber: 3.5 Consensus size: 84
126555388 AGTGTGCTCT
*
126555398 CTGATATGAAATGTGTAA-ACCATGGTTGAAAGATACCAT-GCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTATGTGTAAGACCATGGT
*
126555461 TGAAAGATACCATGACAAC
66 TGAAAGATACCATGGCAAC
126555480 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTATGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTATGTGTAAGACCATGGT
126555545 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
* *
126555564 TTGTTATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T---ATGTGTAAG
*
126555629 ACCATGGTTGAAAGATGCCATGGCAAC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * **
126555656 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
126555702 ATGACAGAAA
Statistics
Matches: 201, Mismatches: 11, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
82 18 0.09
83 21 0.10
84 86 0.43
89 1 0.00
92 75 0.37
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTATGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:126556051 original size:23 final size:25
Alignment explanation
Indices: 126556006--126556052 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
126555996 AATAAATATA
*
126556006 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
126556031 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
126556053 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:126557013 original size:12 final size:12
Alignment explanation
Indices: 126556996--126557025 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
126556986 AGACACACGG
*
126556996 CCATGTCTCAGC
1 CCATGTCTCAGA
126557008 CCATGTCTCAGA
1 CCATGTCTCAGA
126557020 CCATGT
1 CCATGT
126557026 GAAACCTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.37, G:0.17, T:0.27
Consensus pattern (12 bp):
CCATGTCTCAGA
Found at i:126560439 original size:35 final size:35
Alignment explanation
Indices: 126560392--126560623 Score: 322
Period size: 35 Copynumber: 6.6 Consensus size: 35
126560382 CACGACAAAG
* *
126560392 TGTGAAATGTAGGTATGGCATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
126560427 TGTGAAACGTAGGTATGGTATTAACCATA-TGGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACT-GAGT
* * *
126560462 TGTGAAACGTAGGTATGGTATCATCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
126560497 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
*
126560532 TGTGAAACGTAGGTATGGTATTATCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
** * ** *
126560567 TAAGAAACGTAGGTATGGCATTTCCCATACCGAGT
1 TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
* *
126560602 TGTGAAATGTAGATATGGTATT
1 TGTGAAACGTAGGTATGGTATT
126560624 TGAATGAGGA
Statistics
Matches: 175, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
34 1 0.01
35 174 0.99
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATTAACCATACTGAGT
Found at i:126560574 original size:105 final size:105
Alignment explanation
Indices: 126560392--126560623 Score: 360
Period size: 105 Copynumber: 2.2 Consensus size: 105
126560382 CACGACAAAG
*
126560392 TGTGAAATGTAGGTATGGCATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCATAT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCATAT
** *
126560457 GGAGTTGTGAAACGTAGGTATGGTATCAT-CCATACCGAGT
66 GGAGTTAAGAAACGTAGGTATGGCAT-ATCCCATACCGAGT
* *
126560497 TGTGAAACGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATTATCCATAC
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCATA-
*
126560562 T-GAGTTAAGAAACGTAGGTATGGCATTTCCCATACCGAGT
65 TGGAGTTAAGAAACGTAGGTATGGCATATCCCATACCGAGT
*
126560602 TGTGAAATGTAGATATGGTATT
1 TGTGAAATGTAGGTATGGTATT
126560624 TGAATGAGGA
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
104 1 0.01
105 114 0.98
106 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.31
Consensus pattern (105 bp):
TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATTAACCATAT
GGAGTTAAGAAACGTAGGTATGGCATATCCCATACCGAGT
Found at i:126562151 original size:20 final size:20
Alignment explanation
Indices: 126562126--126562165 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
126562116 AGTGTATACA
* *
126562126 GGGCACCGAAGTGCGAATAG
1 GGGCACAGAAGTGCAAATAG
*
126562146 GGGCACAGATGTGCAAATAG
1 GGGCACAGAAGTGCAAATAG
126562166 AGATACCAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.17, G:0.38, T:0.12
Consensus pattern (20 bp):
GGGCACAGAAGTGCAAATAG
Found at i:126579626 original size:390 final size:396
Alignment explanation
Indices: 126579021--126579802 Score: 1120
Period size: 390 Copynumber: 2.0 Consensus size: 396
126579011 AAACAAAGTT
* *
126579021 TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
1 TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTCAATATTCT
* * *
126579086 CTTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATTTCTCAATGTGTTGGA
66 ATTTTCTAAATTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
** * * * * *
126579151 TATGGGTGTTGGGCCCAACACACTTCAAAGAAACTGAAAAGTCTGAGCAACATTGCGAACTACAA
131 TATGGGTGCAGGACACAACACACTTCAAAGAAACTGAAAACTCTGAGCAACATAGCAAACTACAA
* *
126579216 CACCAGTTATGACATCACATAAACGAAGTTG-AATCTAAAACGGCACCATTGACTTCTCATGGAA
196 CACCAGTTATGACATCACATAAACGAAGTTGAAATCTAAAACAGCACCATTGACTT-TCATGAAA
** * * * *
126579280 CATAGGAGAAAAA-GAATAGTGAAAGAGAAAGTACATAA-TTAATCAAATAATTAGCAATCGTTT
260 CATAAAAAAAAAAGGAATAGT--AAGAGAAAGGACATAATTTAATAAAATAATTAGCAATCATTT
* * *
126579343 TACTTGTCAGTTTCTTCTTTTCTTTGTACTGTGAAAAGCCCATGCAGACAAAGTAGAAAGCTTAT
323 TACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTAT
126579408 ATCCACATC
388 ATCCACATC
* *
126579417 TAAACCAGGCTACCTGTGAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTC-A-A-T-T
1 TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTCAATATTCT
* * *
126579478 ATTTTCTAAAATTTT-AAATATATTTGGGGAACCATATGCTTGTATCCATGTCTGAATGTGTTGG
66 ATTTTCT-AAATTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGG
126579542 ATATGGGTGCAGGACAC-A-ACACTTCAAAGGAAA-TGAAAACT-TGGAGCAACATAGCAAACTA
130 ATATGGGTGCAGGACACAACACACTTCAAA-GAAACTGAAAACTCT-GAGCAACATAGCAAACTA
* *
126579603 CAACACCAGTTATGACATCACATAAATGAAGTTGAAATCTAAGACAGCACCATTGACTTTCATGA
193 CAACACCAGTTATGACATCACATAAACGAAGTTGAAATCTAAAACAGCACCATTGACTTTCATGA
* * *
126579668 AACATAAAAAAAAAAGGAATAGTAAGAGAAAGGATATAATTTTATAAAATAATTAGCTATCATTT
258 AACATAAAAAAAAAAGGAATAGTAAGAGAAAGGACATAATTTAATAAAATAATTAGCAATCATTT
*
126579733 TACATATTAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTAT
323 TACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTAT
126579798 ATCCA
388 ATCCA
126579803 AGTTATCATC
Statistics
Matches: 346, Mismatches: 34, Indels: 18
0.87 0.09 0.05
Matches are distributed among these distances:
389 15 0.04
390 170 0.49
391 34 0.10
392 65 0.19
393 7 0.02
394 1 0.00
395 1 0.00
396 53 0.15
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (396 bp):
TAAACCAAGCTACCTGTAAGTGTCAAATACAAGTCTAACTCCGACATAGGTATGTTCAATATTCT
ATTTTCTAAATTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTTGGA
TATGGGTGCAGGACACAACACACTTCAAAGAAACTGAAAACTCTGAGCAACATAGCAAACTACAA
CACCAGTTATGACATCACATAAACGAAGTTGAAATCTAAAACAGCACCATTGACTTTCATGAAAC
ATAAAAAAAAAAGGAATAGTAAGAGAAAGGACATAATTTAATAAAATAATTAGCAATCATTTTAC
ATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGTAGAAAGCTTATATC
CACATC
Found at i:126583176 original size:64 final size:65
Alignment explanation
Indices: 126583073--126583207 Score: 182
Period size: 64 Copynumber: 2.1 Consensus size: 65
126583063 GTCCCTTCCC
* * * * * *
126583073 AATCAATTAATGACATGTCAGCTATTTTTTACATGTCATTTACACCTTATTTAATTAGA-TTTAT
1 AATCATTTAATGACAAGTCAACTAATTTTTACATCTCATTTACACCTCATTTAATTAGATTTTAT
* * *
126583137 AATCATTTAATGACAAGTCAATTAATTTTTACATCTCATTTACACGTCATTTAATTAGATTTTTT
1 AATCATTTAATGACAAGTCAACTAATTTTTACATCTCATTTACACCTCATTTAATTAGATTTTAT
126583202 AATCAT
1 AATCAT
126583208 AAATCCCTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
64 51 0.84
65 10 0.16
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (65 bp):
AATCATTTAATGACAAGTCAACTAATTTTTACATCTCATTTACACCTCATTTAATTAGATTTTAT
Found at i:126586688 original size:11 final size:11
Alignment explanation
Indices: 126586672--126586701 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
126586662 TTGTAACAGC
*
126586672 AAAAGAGAAAA
1 AAAAGAAAAAA
126586683 AAAAGAAAAAA
1 AAAAGAAAAAA
126586694 AAAAGAAA
1 AAAAGAAA
126586702 GAGGAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAA
Found at i:126590260 original size:35 final size:34
Alignment explanation
Indices: 126590223--126590325 Score: 101
Period size: 34 Copynumber: 3.1 Consensus size: 34
126590213 TTTATGATTA
126590223 AAAAATCTAATTAAATGATGTATAAATGAGATGT
1 AAAAATCTAATTAAATGATGTATAAATGAGATGT
* *
126590257 AAAAAT-TAATTGACATG-T-CATTAAAT--GAT-T
1 AAAAATCTAATT-AAATGATGTA-TAAATGAGATGT
* * *
126590287 AAAAATCTAATTAAATGAGGTGTAAATGACATGT
1 AAAAATCTAATTAAATGATGTATAAATGAGATGT
126590321 AAAAA
1 AAAAA
126590326 ATAGCTGACA
Statistics
Matches: 54, Mismatches: 7, Indels: 16
0.70 0.09 0.21
Matches are distributed among these distances:
30 11 0.20
31 13 0.24
32 1 0.02
33 13 0.24
34 16 0.30
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.31
Consensus pattern (34 bp):
AAAAATCTAATTAAATGATGTATAAATGAGATGT
Found at i:126590297 original size:64 final size:65
Alignment explanation
Indices: 126590216--126590350 Score: 200
Period size: 64 Copynumber: 2.1 Consensus size: 65
126590206 TTAGGGATTT
* * * *
126590216 ATGATTAAAAAATCTAATTAAATGATGTATAAATGAGATGTAAAAATTAATTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATGAGGTATAAATGACATGTAAAAAATAACTGACATGTCATTAA
* *
126590281 ATGATT-AAAAATCTAATTAAATGAGGTGTAAATGACATGTAAAAAATAGCTGACATGTCATTAA
1 ATGATTAAAAAATCTAATTAAATGAGGTATAAATGACATGTAAAAAATAACTGACATGTCATTAA
*
126590345 TTGATT
1 ATGATT
126590351 GGGAAGGGAC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
64 57 0.90
65 6 0.10
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (65 bp):
ATGATTAAAAAATCTAATTAAATGAGGTATAAATGACATGTAAAAAATAACTGACATGTCATTAA
Found at i:126590313 original size:31 final size:30
Alignment explanation
Indices: 126590216--126590315 Score: 85
Period size: 31 Copynumber: 3.1 Consensus size: 30
126590206 TTAGGGATTT
*
126590216 ATGATTAAAAAATCTAATTAAATGATGTATAA
1 ATGATT-AAAAATCTAATTAAATGACGT-TAA
* * *
126590248 ATGAGATGTAAAAAT-TAATTGACATGTCATTAA
1 AT--GAT-TAAAAATCTAATT-AAATGACGTTAA
*
126590281 ATGATTAAAAATCTAATTAAATGAGGTGTAA
1 ATGATTAAAAATCTAATTAAATGACGT-TAA
126590312 ATGA
1 ATGA
126590316 CATGTAAAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 13
0.72 0.11 0.17
Matches are distributed among these distances:
30 12 0.22
31 15 0.28
32 2 0.04
33 10 0.19
34 14 0.26
35 1 0.02
ACGTcount: A:0.49, C:0.04, G:0.14, T:0.33
Consensus pattern (30 bp):
ATGATTAAAAATCTAATTAAATGACGTTAA
Found at i:126601970 original size:17 final size:18
Alignment explanation
Indices: 126601931--126601971 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
126601921 TATAATTTTA
126601931 AAAAATATATAAAACATC
1 AAAAATATATAAAACATC
*
126601949 AAAAATACTA-AAAATATC
1 AAAAATA-TATAAAACATC
126601967 AAAAA
1 AAAAA
126601972 AAATATTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATATATAAAACATC
Found at i:126602097 original size:30 final size:30
Alignment explanation
Indices: 126602054--126602111 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
126602044 CTTAACAAGC
126602054 AAATGCCTCTAAAATAATAACAAAATTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
* *
126602084 AAATGTCTTTAAAATAATAACAAAATTA
1 AAATGCCTCTAAAATAATAACAAAATTA
126602112 GCAATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.29
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:126612861 original size:107 final size:106
Alignment explanation
Indices: 126612715--126612940 Score: 310
Period size: 107 Copynumber: 2.1 Consensus size: 106
126612705 TTCCTTTTGG
* *
126612715 CATATTCTCAACATAAAATTCTCATTTATAATTACATTTACTTTTCCTATAATATATTTGTGGAA
1 CATATTCTTAA-ATAAAATTCTCATTTATAATTACATTTACTTTTCCAATAATATATTTGTGGAA
** * *
126612780 AGTAATGGCATTTGGTCATTGAAATTAGTGGTAAATAGTGTT
65 AGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
* * *
126612822 CATATTCTTAAAGTAAAATTCTCATTTATATTTGCATTTACTTTTCCAATTATATATTTGTGGAA
1 CATATTCTTAAA-TAAAATTCTCATTTATAATTACATTTACTTTTCCAATAATATATTTGTGGAA
* * *
126612887 GGTAGCCGCATTTGGTCATTCAACTTAGTGGTAAATAATGTT
65 AGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
126612929 CATAGTT-TTAAA
1 CATA-TTCTTAAA
126612941 AATATATATT
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
106 1 0.01
107 102 0.97
108 2 0.02
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.42
Consensus pattern (106 bp):
CATATTCTTAAATAAAATTCTCATTTATAATTACATTTACTTTTCCAATAATATATTTGTGGAAA
GTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
Found at i:126624574 original size:32 final size:32
Alignment explanation
Indices: 126624511--126624605 Score: 108
Period size: 32 Copynumber: 3.0 Consensus size: 32
126624501 TAAGTTTTAG
*
126624511 GAGTTTAATTGAA-ATTTT--AAAAATTTTAA
1 GAGTTTAATTGAATATTTTAAAAAAATTTGAA
126624540 GAGTTTTAA-TGAATATTTTAAAAAAATTTGAA
1 GAG-TTTAATTGAATATTTTAAAAAAATTTGAA
*
126624572 GAGTTTAATTGAATTTTTTTTAAAAAAAATTTGA
1 GAGTTTAATTGAA--TATTTT-AAAAAAATTTGA
126624606 TGAGAATTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
29 7 0.12
30 10 0.18
31 5 0.09
32 17 0.30
34 5 0.09
35 12 0.21
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (32 bp):
GAGTTTAATTGAATATTTTAAAAAAATTTGAA
Found at i:126625139 original size:21 final size:22
Alignment explanation
Indices: 126625115--126625157 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
126625105 TTTCGGTCAC
126625115 TTATTTTATCTTT-T-CAAAATA
1 TTATTTTAT-TTTCTCCAAAATA
126625136 TTATTTTATTTTCTCCAAAATA
1 TTATTTTATTTTCTCCAAAATA
126625158 AATTACGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 3 0.15
21 10 0.50
22 7 0.35
ACGTcount: A:0.33, C:0.12, G:0.00, T:0.56
Consensus pattern (22 bp):
TTATTTTATTTTCTCCAAAATA
Found at i:126625623 original size:26 final size:28
Alignment explanation
Indices: 126625545--126625623 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 28
126625535 AGGTATGACC
* * *
126625545 AAAATAAAAACTTATTAAAGTTAGGTGACT
1 AAAATGAAAATTTATT--AGTTAGGTAACT
126625575 AAAATGAAAATTTATTAAAGTTAGGTAACT
1 AAAATGAAAATTTATT--AGTTAGGTAACT
126625605 AAAATGAAAA-TTATT-GTTA
1 AAAATGAAAATTTATTAGTTA
126625624 ACAATAGTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
26 4 0.09
29 5 0.11
30 37 0.80
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.33
Consensus pattern (28 bp):
AAAATGAAAATTTATTAGTTAGGTAACT
Found at i:126626658 original size:42 final size:42
Alignment explanation
Indices: 126626598--126626719 Score: 142
Period size: 42 Copynumber: 3.0 Consensus size: 42
126626588 CTCCCCCTCA
*
126626598 TTATCGTCTTGAGCAACACTTTGGTCACGGTTCCCTTGAGAG
1 TTATCATCTTGAGCAACACTTTGGTCACGGTTCCCTTGAGAG
* *
126626640 TTATCATCTTGAGTAACACTTTGGTCGCGGTTCCCTTGAGA-
1 TTATCATCTTGAGCAACACTTTGGTCACGGTTCCCTTGAGAG
* * * * * *
126626681 AT-TC-TCTGGAGCAACACCTCGCTCACGGTTCCCTCGAGA
1 TTATCATCTTGAGCAACACTTTGGTCACGGTTCCCTTGAGA
126626720 TTTTCGGAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
39 28 0.41
40 2 0.03
41 1 0.01
42 38 0.55
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.31
Consensus pattern (42 bp):
TTATCATCTTGAGCAACACTTTGGTCACGGTTCCCTTGAGAG
Found at i:126628893 original size:36 final size:36
Alignment explanation
Indices: 126628841--126629040 Score: 133
Period size: 36 Copynumber: 5.6 Consensus size: 36
126628831 GTGAACATTC
* *
126628841 AGGTGACTTTTGTTGGTCCCATGAATTATTCATTGT
1 AGGTGACTTTTCTTGGTCCCAAGAATTATTCATTGT
*
126628877 AGGTGACTTTTCTTGGTCCCAAGAACTA-T--TTGCT
1 AGGTGACTTTTCTTGGTCCCAAGAATTATTCATTG-T
* ****
126628911 -GGTGGCTTTTGC-TGGTCCCAAGAATTATTTGCCGT
1 AGGTGACTTTT-CTTGGTCCCAAGAATTATTCATTGT
* * * * * * ** *
126628946 AGATGATTTTTGC-CGATCCCAGGAACTATTTGTTGC
1 AGGTGACTTTT-CTTGGTCCCAAGAATTATTCATTGT
* *
126628982 AGGTGACTTTTGTTGGTCCCAAGCATTATTCATTGT
1 AGGTGACTTTTCTTGGTCCCAAGAATTATTCATTGT
** *
126629018 CTGTGACTTTTGTTGGTCCCAAG
1 AGGTGACTTTTCTTGGTCCCAAG
126629041 CACTATTCTT
Statistics
Matches: 127, Mismatches: 30, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
33 26 0.20
34 3 0.02
35 2 0.02
36 96 0.76
ACGTcount: A:0.18, C:0.18, G:0.23, T:0.40
Consensus pattern (36 bp):
AGGTGACTTTTCTTGGTCCCAAGAATTATTCATTGT
Found at i:126629796 original size:153 final size:151
Alignment explanation
Indices: 126629613--126630049 Score: 614
Period size: 153 Copynumber: 2.9 Consensus size: 151
126629603 TTTTGAAGAG
* ** *
126629613 ACATCTTGTGATTTAGATTTGCTCATCCCCCAATCAGACCACTCGCTTTGCTTCTTTGAACTGGA
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGACCACTCATTTTGCTTCTTCGAACTGG-
* * * *
126629678 TGCAGCTGCTGCAAAATTGTCACCATCCTCTGCATTTTTATTCCATGCAGACAAGGCATCCCAAC
65 TGCAGCTGCTGCAAATTTGTCACCATCCTCAGCATTTTTATTCCATCCAGACAAAGCATCCCAAC
126629743 CAACATCCACTTTTGGAGAGAC
130 CAACATCCACTTTTGGAGAGAC
* * *
126629765 AACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTTCTTCTTCGAACTGG
1 -ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGACCACTCATTTTGCTTCTTCGAACTGG
* *
126629830 TTGCAGCAGCTGCAAATTTGTCACCATCCTCCGCATTTTTATTCCATCCAGACAAAGCATCCCAA
65 -TGCAGCTGCTGCAAATTTGTCACCATCCTCAGCATTTTTATTCCATCCAGACAAAGCATCCCAA
126629895 CCAACATCCACTTTTGGAGAGAC
129 CCAACATCCACTTTTGGAGAGAC
* * * *
126629918 A-A-CTTGTGAGTTAGATTTGCTCACACCCCAACCAGACCACTCATTTTGCTTCTCCGAACTGGT
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGACCACTCATTTTGCTTCTTCGAACTGGT
* * * *
126629981 CGCAGCTGCAGCAAATTTGTCAACATCCTCAACATTTTTATTCCATCCAG---ATGCATCCCAAC
66 -GCAGCTGCTGCAAATTTGTCACCATCCTCAGCATTTTTATTCCATCCAGACAAAGCATCCCAAC
126630043 CAACATC
130 CAACATC
126630050 TGACACCTTG
Statistics
Matches: 257, Mismatches: 26, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
147 18 0.07
149 1 0.00
150 97 0.38
151 1 0.00
152 1 0.00
153 139 0.54
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (151 bp):
ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGACCACTCATTTTGCTTCTTCGAACTGGT
GCAGCTGCTGCAAATTTGTCACCATCCTCAGCATTTTTATTCCATCCAGACAAAGCATCCCAACC
AACATCCACTTTTGGAGAGAC
Found at i:126641940 original size:17 final size:18
Alignment explanation
Indices: 126641906--126641943 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
126641896 TTTATTTAAT
126641906 AATATTTTTATCTCAAAA
1 AATATTTTTATCTCAAAA
*
126641924 AATATTTTT-TCTTAAAA
1 AATATTTTTATCTCAAAA
126641941 AAT
1 AAT
126641944 TTTCTATAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (18 bp):
AATATTTTTATCTCAAAA
Found at i:126642144 original size:28 final size:29
Alignment explanation
Indices: 126642090--126642144 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
126642080 ATAGTGAATG
* *
126642090 ATTTAAAAATTTTATATAAAATATATTTT
1 ATTTAAAAATGTTATATAAAAGATATTTT
*
126642119 ATTT-AAAATGTTATATAAAAGCTATT
1 ATTTAAAAATGTTATATAAAAGATATT
126642145 GATTATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (29 bp):
ATTTAAAAATGTTATATAAAAGATATTTT
Found at i:126643768 original size:25 final size:25
Alignment explanation
Indices: 126643720--126643796 Score: 77
Period size: 25 Copynumber: 3.0 Consensus size: 25
126643710 GCCTAGTATT
*
126643720 AAACCTAAACCCAACTATCTACCCA
1 AAACCTAAACCCAACTATCAACCCA
*
126643745 AAACCTAAACCCAATTA-CAAACCCA
1 AAACCTAAACCCAACTATC-AACCCA
* *
126643770 AAA-CTCAAACCTAAATTATCAACCCA
1 AAACCT-AAACC-CAACTATCAACCCA
126643796 A
1 A
126643797 TTAAACCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
24 3 0.07
25 29 0.64
26 12 0.27
27 1 0.02
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (25 bp):
AAACCTAAACCCAACTATCAACCCA
Found at i:126645388 original size:26 final size:25
Alignment explanation
Indices: 126645354--126645415 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 25
126645344 AATTTTCATG
* *
126645354 TATAGTATTTAATTTAAACTGTTTTA
1 TATATTATTTAATTTAAAAT-TTTTA
* * *
126645380 TATGTTATTCATTTTAAAATTTTTA
1 TATATTATTTAATTTAAAATTTTTA
126645405 TATATT-TTTAA
1 TATATTATTTAA
126645416 AGCTCTTTTT
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
24 3 0.11
25 10 0.36
26 15 0.54
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (25 bp):
TATATTATTTAATTTAAAATTTTTA
Found at i:126647306 original size:44 final size:45
Alignment explanation
Indices: 126647253--126647355 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 45
126647243 TGTCTTTGAC
* * *
126647253 ATGGACTTACATGAATTATTCATGTCTCCAATGCCATA-TATAAT
1 ATGGACTTACATGAATCAATCATGTCTCCAAAGCCATATTATAAT
** * *
126647297 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGAATCAATCATGTCTCCAAAGCCATA-TTATAAT
126647343 ATGGACTTACATG
1 ATGGACTTACATG
126647356 GCTCATTTCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
44 32 0.64
46 18 0.36
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (45 bp):
ATGGACTTACATGAATCAATCATGTCTCCAAAGCCATATTATAAT
Found at i:126647354 original size:46 final size:44
Alignment explanation
Indices: 126647275--126647360 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
126647265 GAATTATTCA
*
126647275 TGTCTCCAATGCCATATATAATATGGACTTACATGGCTCAATCC
1 TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
*
126647319 TGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TGTCTCCAAAGCCATA--TATAATATGGACTTACATGGCTCA
126647361 TTTCTGTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 15 0.39
46 23 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (44 bp):
TGTCTCCAAAGCCATATATAATATGGACTTACATGGCTCAATCC
Found at i:126649341 original size:19 final size:17
Alignment explanation
Indices: 126649307--126649341 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
126649297 CTAAAATTGT
126649307 AACAAAATTAACAATAA
1 AACAAAATTAACAATAA
126649324 AACAAGAATTATACAATA
1 AACAA-AATTA-ACAATA
126649342 TCCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (17 bp):
AACAAAATTAACAATAA
Found at i:126650530 original size:22 final size:22
Alignment explanation
Indices: 126650490--126650532 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
126650480 TTAATTGAAA
*
126650490 AATAAAATTTATAATTTAATTT
1 AATAAAATATATAATTTAATTT
126650512 AATAATAATATATAA-TTAATT
1 AATAA-AATATATAATTTAATT
126650533 ATATTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AATAAAATATATAATTTAATTT
Found at i:126653440 original size:46 final size:46
Alignment explanation
Indices: 126653380--126653645 Score: 325
Period size: 46 Copynumber: 6.0 Consensus size: 46
126653370 TTTGACGTGA
* * * * * *
126653380 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
** * * *
126653426 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
126653472 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
126653518 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCGGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
126653564 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
126653602 TGCCATTGTATCTTTCAACCATTGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126653646 AGAGCACACT
Statistics
Matches: 194, Mismatches: 17, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
38 30 0.15
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 5 0.03
46 150 0.77
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:126653613 original size:38 final size:38
Alignment explanation
Indices: 126653561--126653634 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
126653551 TTTCATATCG
126653561 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
1 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
* *
126653599 GGTTGCCATTGTATCTTTCAACCATTGTCTTACACA
1 GGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
126653635 TTTCATATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (38 bp):
GGTTGCCATGGTATCTTTCAACCATGGTCTTACACACA
Found at i:126655786 original size:11 final size:11
Alignment explanation
Indices: 126655770--126655817 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
126655760 CTTTATATAC
126655770 TAATAAAATAA
1 TAATAAAATAA
*
126655781 TAATAAAATATCT
1 TAATAAAATA--A
* *
126655794 TATTAAAATAT
1 TAATAAAATAA
126655805 TAATAAAATAA
1 TAATAAAATAA
126655816 TA
1 TA
126655818 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:126661366 original size:22 final size:21
Alignment explanation
Indices: 126661323--126661367 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
126661313 TGTTGGCCAC
*
126661323 CCACCTTGGCCACCAACTCCA
1 CCACCTTGGCCACCAACACCA
126661344 CCACTCTTGGCCACCTAA-ACCA
1 CCAC-CTTGGCCACC-AACACCA
126661366 CC
1 CC
126661368 CCAACCACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 4 0.19
22 15 0.71
23 2 0.10
ACGTcount: A:0.24, C:0.51, G:0.09, T:0.16
Consensus pattern (21 bp):
CCACCTTGGCCACCAACACCA
Found at i:126661484 original size:22 final size:22
Alignment explanation
Indices: 126661459--126661510 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
126661449 ATGATTGTTC
*
126661459 TTTGTTTTGGAGGAGTTTTTTT
1 TTTGTTTTGGAGGAGGTTTTTT
***
126661481 TTTGTTTTTTTGGAGGTTTTTT
1 TTTGTTTTGGAGGAGGTTTTTT
126661503 TTTGTTTT
1 TTTGTTTT
126661511 TTGGAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.06, C:0.00, G:0.23, T:0.71
Consensus pattern (22 bp):
TTTGTTTTGGAGGAGGTTTTTT
Found at i:126661515 original size:21 final size:22
Alignment explanation
Indices: 126661470--126661512 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
126661460 TTGTTTTGGA
*
126661470 GGAGTTTTTTTTTTGTTTTTTT
1 GGAGGTTTTTTTTTGTTTTTTT
126661492 GGAGGTTTTTTTTTGTTTTTT
1 GGAGGTTTTTTTTTGTTTTTT
126661513 GGAAAGAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.05, C:0.00, G:0.21, T:0.74
Consensus pattern (22 bp):
GGAGGTTTTTTTTTGTTTTTTT
Found at i:126661552 original size:22 final size:24
Alignment explanation
Indices: 126661502--126661552 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
126661492 GGAGGTTTTT
* *
126661502 TTTTGTTTTTTGGAAAGAAGGTTAT
1 TTTTGTTTTTTGG-AAGAAGGCTAG
126661527 TTTTGTTTTTTGG-A-AAGGCTAG
1 TTTTGTTTTTTGGAAGAAGGCTAG
126661549 TTTT
1 TTTT
126661553 TGGAGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 1 0.04
25 13 0.54
ACGTcount: A:0.20, C:0.02, G:0.24, T:0.55
Consensus pattern (24 bp):
TTTTGTTTTTTGGAAGAAGGCTAG
Found at i:126661857 original size:3 final size:3
Alignment explanation
Indices: 126661843--126661928 Score: 56
Period size: 3 Copynumber: 28.3 Consensus size: 3
126661833 GAGCTTCGTT
* *
126661843 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
126661887 TT- TCTCA TGTA TATA TTA TTC TT- TATA TTA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
126661929 ATATGCCCTC
Statistics
Matches: 67, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
2 7 0.10
3 51 0.76
4 7 0.10
5 2 0.03
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:126661885 original size:18 final size:18
Alignment explanation
Indices: 126661843--126661932 Score: 83
Period size: 18 Copynumber: 4.7 Consensus size: 18
126661833 GAGCTTCGTT
*
126661843 TTATTATTTTATTATTTTTA
1 TTATTA-TTTA-TATTATTA
*
126661863 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
*
126661881 TTATTATTTCTCATGTATATA
1 TTATTATTTAT-AT-TAT-TA
*
126661902 TTATTCTTTATATTATTA
1 TTATTATTTATATTATTA
126661920 TTA-TATTATATAT
1 TTATTATT-TATAT
126661933 GCCCTCTCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
17 3 0.05
18 26 0.44
19 9 0.15
20 10 0.17
21 11 0.19
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:126662175 original size:20 final size:20
Alignment explanation
Indices: 126662152--126662191 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
126662142 TATATTACTG
*
126662152 TATATTTTTATGTATATATA
1 TATATTTATATGTATATATA
*
126662172 TATATTTATATTTATATATA
1 TATATTTATATGTATATATA
126662192 GTATTGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (20 bp):
TATATTTATATGTATATATA
Done.