Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 412 of 433
Found at i:126889558 original size:57 final size:57
Alignment explanation
Indices: 126889445--126889561 Score: 141
Period size: 57 Copynumber: 2.1 Consensus size: 57
126889435 ACAAGTAAAA
* *
126889445 ATATAATAATAATATATAAATAATAATGTAAAATAATAATAGTTTGTAAAAAATAAT
1 ATATAATAATAATATATAAATAATAATGTAAAATAATAATAATTTATAAAAAATAAT
* * *
126889502 ATATAATAAATAATA-ATATAA-AATAATGTATAATAA-AATAATTATATAATATATAAT
1 ATATAAT-AATAATATATA-AATAATAATGTAAAATAATAATAATT-TATAAAAAATAAT
126889559 ATA
1 ATA
126889562 AAGATATATA
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
56 6 0.12
57 37 0.71
58 9 0.17
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (57 bp):
ATATAATAATAATATATAAATAATAATGTAAAATAATAATAATTTATAAAAAATAAT
Found at i:126889568 original size:20 final size:19
Alignment explanation
Indices: 126889344--126889569 Score: 54
Period size: 19 Copynumber: 12.2 Consensus size: 19
126889334 AAAAGATGAC
* *
126889344 ATAATAATATAAAAT-AATT
1 ATAAT-ATATAATATAAAAT
*
126889363 ATAATATATAATATGAAAGT
1 ATAATATATAATAT-AAAAT
* * *
126889383 AT-ATATGTAAAATAATAT
1 ATAATATATAATATAAAAT
126889401 ATAATATAT-ATA-AATAAT
1 ATAATATATAATATAA-AAT
* * *
126889419 ATAAAGAATACGTAATA-CAAGT
1 AT-AA-TATA--TAATATAAAAT
* *
126889441 A-AAAATATAATAATAATAT
1 ATAATATATAAT-ATAAAAT
*
126889460 ATAA-ATAATAATGTAAAAT
1 ATAATAT-ATAATATAAAAT
* *
126889479 AATAATAGT-T--TGTAAAAA
1 -ATAATA-TATAATATAAAAT
*
126889497 ATAATATATAATA-AATA-
1 ATAATATATAATATAAAAT
**
126889514 ATAATATA-AA-ATAATGT
1 ATAATATATAATATAAAAT
**
126889531 ATAATA-A-AATA-ATTAT
1 ATAATATATAATATAAAAT
126889547 ATAATATATAATATAAAGAT
1 ATAATATATAATATAAA-AT
126889567 ATA
1 ATA
126889570 TAAACATTAT
Statistics
Matches: 156, Mismatches: 25, Indels: 51
0.67 0.11 0.22
Matches are distributed among these distances:
15 1 0.01
16 18 0.12
17 29 0.19
18 34 0.22
19 37 0.24
20 27 0.17
21 1 0.01
22 5 0.03
23 4 0.03
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (19 bp):
ATAATATATAATATAAAAT
Found at i:126889571 original size:50 final size:51
Alignment explanation
Indices: 126889497--126889620 Score: 127
Period size: 50 Copynumber: 2.5 Consensus size: 51
126889487 TTTGTAAAAA
126889497 ATAATATATAATAAATAATAATATAAA-ATAATGT-ATAATAAA-ATAATTAT
1 ATAATATATAATAAATAATAATATAAACATAATGTGATAA-AAATAT-ATTAT
*
126889547 ATAATATATAATATAA-AGAT-ATATAAACATTATGTGATAAAAATATA-T-T
1 ATAATATATAATA-AATA-ATAATATAAACATAATGTGATAAAAATATATTAT
* * *
126889596 ATAATAAATAATAAGTAATGATATA
1 ATAATATATAATAAATAATAATATA
126889621 TGTTAATTAA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
48 3 0.05
49 19 0.30
50 22 0.34
51 14 0.22
52 6 0.09
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (51 bp):
ATAATATATAATAAATAATAATATAAACATAATGTGATAAAAATATATTAT
Found at i:126889695 original size:23 final size:24
Alignment explanation
Indices: 126889635--126889707 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 24
126889625 AATTAATATG
* *
126889635 ATAATAGAAAGATAT-GAAGTAAT
1 ATAATATAAAGATATATAAGTAAT
126889658 ATAATATAATA-ATATATAAGTAA-
1 ATAATATAA-AGATATATAAGTAAT
*
126889681 ATAATTTAAAGATATATAA-TACAT
1 ATAATATAAAGATATATAAGTA-AT
126889705 ATA
1 ATA
126889708 TTCATATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
22 3 0.07
23 29 0.69
24 10 0.24
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.33
Consensus pattern (24 bp):
ATAATATAAAGATATATAAGTAAT
Found at i:126891675 original size:2 final size:2
Alignment explanation
Indices: 126891668--126891696 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
126891658 AGTTCTGATC
126891668 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126891697 CTCTTTTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:126895658 original size:46 final size:46
Alignment explanation
Indices: 126895601--126895773 Score: 274
Period size: 46 Copynumber: 3.8 Consensus size: 46
126895591 TTTTTGTCAT
** * * * *
126895601 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTTAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
126895647 GTTGCCGTGGTATCTTTCAACCATGGTCTTACACATCTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126895693 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126895739 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACA
126895774 CAGGTTGTCA
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:126895787 original size:38 final size:38
Alignment explanation
Indices: 126895736--126895894 Score: 237
Period size: 38 Copynumber: 4.0 Consensus size: 38
126895726 CATTTCATAT
126895736 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
126895774 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCTA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C-A
*
126895818 TCAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACA
1 -CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
126895857 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
126895895 TTTCATATCA
Statistics
Matches: 112, Mismatches: 2, Indels: 14
0.88 0.02 0.11
Matches are distributed among these distances:
38 69 0.62
39 1 0.01
40 4 0.04
43 4 0.04
44 1 0.01
45 33 0.29
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:126895838 original size:45 final size:45
Alignment explanation
Indices: 126895774--126895905 Score: 197
Period size: 45 Copynumber: 3.1 Consensus size: 45
126895764 GTCTTACACA
126895774 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCTAT
1 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCTAT
126895819 CAGGTTGTCATGGTATCTTTCAACCATGGTCTT--ACA---C-A-
1 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCTAT
*
126895857 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTC-TAT
126895903 CAG
1 CAG
126895906 AGAGCACACT
Statistics
Matches: 78, Mismatches: 1, Indels: 15
0.83 0.01 0.16
Matches are distributed among these distances:
38 32 0.41
39 1 0.01
40 4 0.05
43 4 0.05
45 34 0.44
46 3 0.04
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (45 bp):
CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCTAT
Found at i:126895857 original size:83 final size:84
Alignment explanation
Indices: 126895690--126895905 Score: 407
Period size: 83 Copynumber: 2.6 Consensus size: 84
126895680 CATCTCATAT
126895690 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
126895755 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
* *
126895774 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGTTGTCATGGTATCTT
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
126895838 TCAACCATGGTCTTACACA
66 TCAACCATGGTCTTACACA
126895857 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
126895906 AGAGCACACT
Statistics
Matches: 128, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
83 81 0.63
84 47 0.37
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.36
Consensus pattern (84 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTT
TCAACCATGGTCTTACACA
Found at i:126906536 original size:27 final size:26
Alignment explanation
Indices: 126906488--126906542 Score: 67
Period size: 28 Copynumber: 2.1 Consensus size: 26
126906478 TTAACCACAA
*
126906488 ATCTATTCTAGTGGCTTGACCACACTT
1 ATCTATTCTAGTGGATTGACCACA-TT
*
126906515 ATCTGATTCTGGTGGATT-ACCACATT
1 ATCT-ATTCTAGTGGATTGACCACATT
126906541 AT
1 AT
126906543 TTTTGTCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 4 0.16
27 10 0.40
28 11 0.44
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (26 bp):
ATCTATTCTAGTGGATTGACCACATT
Found at i:126907282 original size:3 final size:3
Alignment explanation
Indices: 126907276--126907314 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
126907266 TAATAACAGA
126907276 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
126907315 GACACGACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:126907721 original size:3 final size:3
Alignment explanation
Indices: 126907707--126908559 Score: 243
Period size: 3 Copynumber: 287.0 Consensus size: 3
126907697 AAACATATAC
* * *
126907707 TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA -AA TAA -AG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
126907753 TAA TTAA -AA TAA TAC T-A TATG TAA -AA T-A TATA TATA TACC TATA
1 TAA -TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TA-A TA-A TA-A
* * * *
126907797 TAA TAA -AA -ACA TACA CTAA TAT TAA TAA TAA TAA TAA TAC TAG CAA
1 TAA TAA TAA TA-A TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * **
126907843 TAA TAA TGA -AA TACA -AA AAA GTAA -ATA TAA TAA TAA TGC TAA -AA
1 TAA TAA TAA TAA TA-A TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA
* * * *
126907887 TAA -AG TAA TTAA AAA TAG T-A TTA TATA TAA T-A TATA TATA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TA-A TAA TAA TA-A TA-A TAA TAA
* *
126907933 GAA T-A TACA CTAA TAC TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * ** *
126907979 TAA TAA TAA TAA TAG TAA TAA TAT TGA -AA TACA AAA GGCA -AA T-G
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA -TAA TAA TAA
* * *
126908023 TAA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA TTAA -AA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA
* * * *
126908064 TAC T-A TGTA TAA -ATA TAAA TACA T-A TACA CATA TAA TAA AAA TATA
1 TAA TAA T-AA TAA TA-A T-AA TA-A TAA TA-A TA-A TAA TAA TAA TA-A
* *
126908110 TAC TAA TAT TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * **
126908158 TAG TAA TAA TAT TGA -AA TACA -AA AAA AAA GCA -AA T-A TAA T-A
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * *
126908199 TAA TAA AAA TAA TAA -AA TAA -AG TAA TTAA -AA -AA TAA TAC T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
* * *
126908240 TGTA TAA -ATA TAAA TACA T-A TACA TATA TAA TAA AAA TATA TAC TAA
1 T-AA TAA TA-A T-AA TA-A TAA TA-A TA-A TAA TAA TAA TA-A TAA TAA
* * *
126908287 TAT TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA GAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
126908335 TAA TAA GAA TAA TAA TAG TAA TAG TAA TAA TAT TGA -AA TACA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
* ** * * *
126908379 -AA AAA GCA -AA T-A TAA T-A TAA TAA AAA TAT TAA -AA TAA -AG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
126908421 TTAA -AA AAA TAA TAC T-A TGTA TAA -ATA TAAA TACA T-A TACG TATA
1 -TAA TAA TAA TAA TAA TAA T-AA TAA TA-A T-AA TA-A TAA TA-A TA-A
* *
126908466 TAA TAA -AA AAA T-A TGCAC TAA TATA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA T--AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* *
126908512 TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA T-A TAA -AA -AA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
126908557 TAA
1 TAA
126908560 AAATGATAGT
Statistics
Matches: 630, Mismatches: 129, Indels: 182
0.67 0.14 0.19
Matches are distributed among these distances:
2 86 0.14
3 442 0.70
4 94 0.15
5 8 0.01
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:126907736 original size:246 final size:236
Alignment explanation
Indices: 126907479--126907987 Score: 738
Period size: 246 Copynumber: 2.1 Consensus size: 236
126907469 AGGAAGGCAT
126907479 ATAAT-ATAATAATAATATTAAAATAAAGTAATTAAAAACAATACTATATAT-AAATATATATAT
1 ATAATAATAATAATAATATTAAAATAAAGTAATT-AAAACAATACTATATATAAAATATATATAT
* * *
126907542 ATACAC-ATATAATAAAAACATACACTAATATTAATAATGATAATGATACTAACAATAGTAATGA
65 ATAC-CTATATAATAAAAACATACACTAATATTAATAATAATAATAATACTAACAATAATAATGA
*
126907606 AATACAAAAAAAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTAAAAAATACTATGT
129 AATAC-AAAAAAG----TA-AATATAATAATAATACTAAAATAAAGTAATT-AAAAATACTAT-T
* *
126907671 ATAAATATATATATACATATATAATAA-AACATATACTAATATTAATAATAATA
186 AT--ATATA-ATATACATATATAATAAGAACATACACTAATACTAATAATAATA
* *
126907724 ATAATAATAATAATAATATTAAAATAAAGTAATTAAAATAATACTATATGTAAAATATATATATA
1 ATAATAATAATAATAATATTAAAATAAAGTAATTAAAACAATACTATATATAAAATATATATATA
*
126907789 TACCTATATAATAAAAACATACACTAATATTAATAATAATAATAATACTAGCAATAATAATGAAA
66 TACCTATATAATAAAAACATACACTAATATTAATAATAATAATAATACTAACAATAATAATGAAA
* *
126907854 TACAAAAAAGTAAATATAATAATAATGCTAAAATAAAGTAATTAAAAATAGTATTATATATAATA
131 TACAAAAAAGTAAATATAATAATAATACTAAAATAAAGTAATTAAAAATACTATTATATATAATA
* *
126907919 TATATATATAATAAGAATATACACTAATACTAATAATAATA
196 TACATATATAATAAGAACATACACTAATACTAATAATAATA
*
126907960 ATAATAATAATAATAATAATAATAATAA
1 ATAATAATAATAATAATATTAA-AATAA
126907988 TAATAGTAAT
Statistics
Matches: 245, Mismatches: 14, Indels: 18
0.88 0.05 0.06
Matches are distributed among these distances:
235 16 0.07
236 49 0.20
237 5 0.02
238 3 0.01
239 10 0.04
240 29 0.12
241 2 0.01
245 28 0.11
246 103 0.42
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (236 bp):
ATAATAATAATAATAATATTAAAATAAAGTAATTAAAACAATACTATATATAAAATATATATATA
TACCTATATAATAAAAACATACACTAATATTAATAATAATAATAATACTAACAATAATAATGAAA
TACAAAAAAGTAAATATAATAATAATACTAAAATAAAGTAATTAAAAATACTATTATATATAATA
TACATATATAATAAGAACATACACTAATACTAATAATAATA
Found at i:126907855 original size:106 final size:101
Alignment explanation
Indices: 126907624--126907847 Score: 333
Period size: 106 Copynumber: 2.2 Consensus size: 101
126907614 AAAAGTAAAT
* *
126907624 ATAAT-ATAATAATAATATTAAAATAAAGTAATTAAAAAATACTATGTATAAATATATATATACA
1 ATAATAATAACAATAATATTAAAATAAAGTAATTAAAAAATACTATGTAAAAATATATATATACA
*
126907688 TATATAATAAAACATATACTAATATTAATAATAATA
66 TATATAATAAAACATACACTAATATTAATAATAATA
*
126907724 ATAATAATAATAATAATATTAAAATAAAGTAATTAAAATAATACTATATGTAAAATATATATATA
1 ATAATAATAACAATAATATTAAAATAAAGTAATTAAAA-AATAC--TATGTAAAA-ATATATATA
*
126907789 TACCTATATAATAAAAACATACACTAATATTAATAATAATA
62 TACATATATAAT-AAAACATACACTAATATTAATAATAATA
* *
126907830 ATAATACTAGCAATAATA
1 ATAATAATAACAATAATA
126907848 ATGAAATACA
Statistics
Matches: 112, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
100 5 0.04
101 32 0.29
102 5 0.04
104 8 0.07
105 20 0.18
106 42 0.38
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.34
Consensus pattern (101 bp):
ATAATAATAACAATAATATTAAAATAAAGTAATTAAAAAATACTATGTAAAAATATATATATACA
TATATAATAAAACATACACTAATATTAATAATAATA
Found at i:126908257 original size:171 final size:167
Alignment explanation
Indices: 126907924--126908339 Score: 688
Period size: 171 Copynumber: 2.4 Consensus size: 167
126907914 TAATATATAT
* *
126907924 ATATAATAAGAATATACACTAATACTAATAATAATAATAATAATAATAATAATAATAATAATAAT
1 ATATAATAAAAATATATACTAATA-T--TAATAATAATAATAATAATAATAATAATAATAATAAT
* * *
126907989 AATAGTAATAATATTGAAATACAAAAGGCAAATGTAATATAATAAAAATATTAAAATAAAGTAAT
63 AATAGTAATAATATTGAAATACAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAAT
126908054 TAAAAAATAATACTATGTATAAATATAAATACATATACAC
128 TAAAAAATAATACTATGTATAAATATAAATACATATACAC
126908094 ATATAATAAAAATATATACTAATATTAATAATAATAATAATAATAATAATAATAATAATAATAAT
1 ATATAATAAAAATATATACTAATATTAATAATAATAATAATAATAATAATAATAATAATAATAAT
126908159 AGTAATAATATTGAAATACAAAAAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAA
66 AGTAATAATATTGAAATAC----AAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAA
*
126908224 TTAAAAAATAATACTATGTATAAATATAAATACATATACAT
127 TTAAAAAATAATACTATGTATAAATATAAATACATATACAC
* *
126908265 ATATAATAAAAATATATACTAATATTAATAATAACAATAATAATAATAATAATAATAATAATAAG
1 ATATAATAAAAATATATACTAATATTAATAATAATAATAATAATAATAATAATAATAATAATAAT
*
126908330 AATAATAATA
66 AGTAATAATA
126908340 AGAATAATAA
Statistics
Matches: 233, Mismatches: 9, Indels: 7
0.94 0.04 0.03
Matches are distributed among these distances:
167 59 0.25
169 1 0.00
170 22 0.09
171 151 0.65
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (167 bp):
ATATAATAAAAATATATACTAATATTAATAATAATAATAATAATAATAATAATAATAATAATAAT
AGTAATAATATTGAAATACAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAATTAA
AAAATAATACTATGTATAAATATAAATACATATACAC
Found at i:126908364 original size:198 final size:200
Alignment explanation
Indices: 126908096--126908541 Score: 740
Period size: 198 Copynumber: 2.2 Consensus size: 200
126908086 ATATACACAT
* * *
126908096 ATAATAAAAAT-AT-ATACTAATATTAATAATAATAATAATAATAATAATAATAATAATAATAAT
1 ATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAAGAATAATAATAATAAT
126908159 AGTAATAATATTGAAATACAAAAAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAA
66 AGTAATAATATTGAAATAC-AAAAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAA
*
126908224 TT-AAAAAATAATACTATGTATAAATATAAATACATATACATATATAATAAAAATATAT-ACTAA
130 TTAAAAAAATAATACTATGTATAAATATAAATACATATACATATATAATAAAAAAATATCACTAA
126908287 TAT-TA
195 TATATA
* * *
126908292 ATAATAACAATAATAATAATAATAATAATAATAATAAGAATAATAATAAGAATAATAATAGTAAT
1 ATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAAGAATAATAATAATAAT
*
126908357 AGTAATAATATTGAAATACAAAAAAAAGCAAATATAATATAATAAAAATATTAAAATAAAGTAAT
66 AGTAATAATATTGAAATACAAAAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAAT
*
126908422 TAAAAAAATAATACTATGTATAAATATAAATACATATACGTATATAATAAAAAAATATGCACTAA
131 TAAAAAAATAATACTATGTATAAATATAAATACATATACATATATAATAAAAAAATAT-CACTAA
126908487 TATATA
195 TATATA
* *
126908493 ATAATAATAATAATAATAATAATAATAATAATAATAATAGTAATAATAA
1 ATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAA
126908542 TATAAAAAAT
Statistics
Matches: 232, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
196 10 0.04
197 48 0.21
198 118 0.51
200 8 0.03
201 48 0.21
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (200 bp):
ATAATAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAAGAATAATAATAATAAT
AGTAATAATATTGAAATACAAAAAAAAGCAAATATAATATAATAAAAATAATAAAATAAAGTAAT
TAAAAAAATAATACTATGTATAAATATAAATACATATACATATATAATAAAAAAATATCACTAAT
ATATA
Found at i:126910289 original size:77 final size:77
Alignment explanation
Indices: 126910170--126910321 Score: 268
Period size: 77 Copynumber: 2.0 Consensus size: 77
126910160 ATAGAAACTA
126910170 AAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
126910235 AAACAGAAATTG
66 AAACAGAAATTG
* * * *
126910247 AAAATACCTCGGCCTGTGACTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
126910312 AAACAGAAAT
66 AAACAGAAAT
126910322 AAAAATATCA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 71 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (77 bp):
AAAATACCTCAGCATATGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AAACAGAAATTG
Found at i:126912998 original size:10 final size:10
Alignment explanation
Indices: 126912983--126913007 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
126912973 ATTGCACTCC
126912983 CTTTTATCGA
1 CTTTTATCGA
126912993 CTTTTATCGA
1 CTTTTATCGA
126913003 CTTTT
1 CTTTT
126913008 GGCTTACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.20, G:0.08, T:0.56
Consensus pattern (10 bp):
CTTTTATCGA
Found at i:126922434 original size:43 final size:43
Alignment explanation
Indices: 126922350--126922477 Score: 161
Period size: 43 Copynumber: 3.0 Consensus size: 43
126922340 GCTGGTGAAT
* *
126922350 AATATTATCGGGCTTCAGGCC-AGCAAGCTATAATGCCAGTGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAGTGA
* * *
126922392 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCTAGTGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAGTGA
* * * *
126922435 AATGATATCGGGCTTCAAGCCTAGCAGGCGA-AATACCAGTGA
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAGTGA
126922477 A
1 A
126922478 TGAGTTCAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 28 0.38
43 45 0.62
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (43 bp):
AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCAGTGA
Found at i:126925211 original size:2 final size:2
Alignment explanation
Indices: 126925204--126925233 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
126925194 AAAATAATAC
*
126925204 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126925234 CACATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:126925372 original size:12 final size:12
Alignment explanation
Indices: 126925349--126925387 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
126925339 AGTAATTACA
126925349 AAATACTATATAT
1 AAATA-TATATAT
126925362 AAATATATATAT
1 AAATATATATAT
*
126925374 ACATATATA-AT
1 AAATATATATAT
126925385 AAA
1 AAA
126925388 ACATATACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 4 0.17
12 15 0.62
13 5 0.21
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (12 bp):
AAATATATATAT
Found at i:126925542 original size:282 final size:283
Alignment explanation
Indices: 126925169--126926044 Score: 1260
Period size: 291 Copynumber: 3.1 Consensus size: 283
126925159 GGCATATAAT
126925169 ATAATAATATTAAAATAAAGTAATT-AAAATAATACTATATATAAATATATATATATATATATAT
1 ATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATAT--A-A-A-ATATATATAT-T-T
*
126925233 ACAC-ATATAATAAAAACATAAACTAATATTAATAATGATAATAATACTAACAATAGTAATGAAA
59 AC-CTATATAATAAAAACATACACTAATATTAATAATGATAATAATACTAACAATAGTAATGAAA
*
126925297 TACAAAAAAAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTACAAAATACTATATAT
123 TACAAAAAAAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTAAAAAATACTATATAT
*
126925362 AAATATATATATACATATATAATAAAACATATACTAATATTAATAATAATAATACTAGAAATAAT
188 AAATATATATATACATATATAATAAAACATATACTAATAATAATAATAATAATACTAGAAATAAT
126925427 AATGAAATACAAAAAAAATAAATATAATATA
253 AATGAAATACAAAAAAAATAAATATAATATA
126925458 ATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAAA-ATATATATTTACCTATA
1 ATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAAATATATATATTTACCTATA
*
126925522 TAATAAAAACATACACTAATATTAATAATGATAATAATGCTAACAATAGTAATGAAATACAAAAA
66 TAATAAAAACATACACTAATATTAATAATGATAATAATACTAACAATAGTAATGAAATACAAAAA
126925587 AAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTAAAAAATACTATATATAAAAAATA
131 AAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTAAAAAATACTATATAT---AAATA
126925652 TATATATACATATATAATAAAACATATACTTATTTTAATAATAATAATAATAATACTAGAAATAA
193 TATATATACATATATAATAAAACATATAC------TAATAATAATAATAATAATACTAGAAATAA
*
126925717 TAATGAAATACAAAAAAAATAAACATAATATA
252 TAATGAAATACAAAAAAAATAAATATAATATA
* *
126925749 ATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATGTAAAATATATATATATACCTATA
1 ATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAAATATATATATTTACCTATA
* * *
126925814 TAAT-AAAACATACACTAATATTAATAATAATAATAATACTAGCAATAATAATGAAATACAAAAA
66 TAATAAAAACATACACTAATATTAATAATGATAATAATACTAACAATAGTAATGAAATACAAAAA
* *
126925878 AAGT-AA-AT-ATA-AA-AATAATGTTAAAATAAAGTAATTAAAAATAGTATTATATATAAATAT
131 AAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTAAAAA-A-TACTATATATAAATAT
* * * *
126925938 ATATATACGTATATAATAAGAATATACACTAATAATAATAATAATAATA-TA-TAATAATAAT--
194 ATATATACATATATAATAA-AACATATACTAATAATAATAATAATAATACTAGAAATAATAATGA
*
126925999 AATA-ATAATAATAAT-AATAATAATAATA
258 AATACA-AA-AAAAATAAAT-ATAAT-ATA
*
126926027 ATAATAATAGTAATAATA
1 ATAATAATATTAA-AATA
126926045 GTAATAATAT
Statistics
Matches: 547, Mismatches: 20, Indels: 50
0.89 0.03 0.08
Matches are distributed among these distances:
275 1 0.00
276 8 0.01
277 10 0.02
278 24 0.04
279 6 0.01
280 20 0.04
281 1 0.00
282 125 0.23
283 1 0.00
284 8 0.01
285 59 0.11
286 35 0.06
287 4 0.01
288 13 0.02
289 27 0.05
290 19 0.03
291 166 0.30
292 20 0.04
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (283 bp):
ATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAAATATATATATTTACCTATA
TAATAAAAACATACACTAATATTAATAATGATAATAATACTAACAATAGTAATGAAATACAAAAA
AAGTAAATATAATATAATAATAATATTAAAATAAAGTAATTAAAAAATACTATATATAAATATAT
ATATACATATATAATAAAACATATACTAATAATAATAATAATAATACTAGAAATAATAATGAAAT
ACAAAAAAAATAAATATAATATA
Found at i:126925647 original size:15 final size:15
Alignment explanation
Indices: 126925627--126925659 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
126925617 ATAAAGTAAT
126925627 TAAAAAATACTATATA
1 TAAAAAATA-TATATA
126925643 TAAAAAATATATATA
1 TAAAAAATATATATA
126925658 TA
1 TA
126925660 CATATATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAAAATATATATA
Found at i:126925657 original size:17 final size:16
Alignment explanation
Indices: 126925627--126925659 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
126925617 ATAAAGTAAT
*
126925627 TAAAAAATACTATATA
1 TAAAAAATAATATATA
126925643 TAAAAAAT-ATATATA
1 TAAAAAATAATATATA
126925658 TA
1 TA
126925660 CATATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (16 bp):
TAAAAAATAATATATA
Found at i:126925673 original size:24 final size:24
Alignment explanation
Indices: 126925633--126925679 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
126925623 TAATTAAAAA
*
126925633 ATACTATATATAAAAAATATATAT
1 ATACTATATATAAAAAACATATAT
126925657 ATAC-ATATATAATAAAACATATA
1 ATACTATATATAA-AAAACATATA
126925680 CTTATTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (24 bp):
ATACTATATATAAAAAACATATAT
Found at i:126925962 original size:19 final size:19
Alignment explanation
Indices: 126925926--126926230 Score: 110
Period size: 18 Copynumber: 16.8 Consensus size: 19
126925916 AAATAGTATT
126925926 ATATATAA-ATATATATATAC
1 ATATATAATA-ATA-ATATAC
* *
126925946 GTATATAATAAGAATATAC
1 ATATATAATAATAATATAC
126925965 ACTA-ATAATAATAATAATA-
1 A-TATATAATAATAAT-ATAC
126925984 ATATATAATAATAATAATA-
1 ATATATAATAATAAT-ATAC
126926003 ATA-ATAATAATAATAATA-
1 ATATATAATAATAAT-ATAC
126926021 ATA-ATAATAATAATAGTA-
1 ATATATAATAATAATA-TAC
* **
126926039 ATA-ATAGTAATAATATTG
1 ATATATAATAATAATATAC
* *
126926057 A-A-AT-ACAA-AA-A-GC
1 ATATATAATAATAATATAC
* * * *
126926070 AAATGTAAT-ATAATAAAA
1 ATATATAATAATAATATAC
126926088 ATAT-TAA-AATAA-AGTA-
1 ATATATAATAATAATA-TAC
* *
126926104 AT-TA-AAAAATAATACTAT
1 ATATATAATAATAATA-TAC
* *
126926122 GTATAAATATAAATACATATAC
1 ATATATA-AT-AATA-ATATAC
* *
126926144 ATATATAATAAAAATATAT
1 ATATATAATAATAATATAC
*
126926163 ACTA-ATATTAATAATAATA-
1 A-TATATAATAATAAT-ATAC
126926182 ATA-ATAATAATAATAATA-
1 ATATATAATAATAAT-ATAC
126926200 ATA-ATAATAATAATATA-
1 ATATATAATAATAATATAC
126926217 ATA-ATAATAATAAT
1 ATATATAATAATAAT
126926231 GAAATATAAA
Statistics
Matches: 233, Mismatches: 27, Indels: 53
0.74 0.09 0.17
Matches are distributed among these distances:
13 1 0.00
14 2 0.01
15 7 0.03
16 13 0.06
17 34 0.15
18 82 0.35
19 53 0.23
20 23 0.10
21 4 0.02
22 11 0.05
23 3 0.01
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (19 bp):
ATATATAATAATAATATAC
Found at i:126925973 original size:3 final size:3
Alignment explanation
Indices: 126925967--126926582 Score: 272
Period size: 3 Copynumber: 209.7 Consensus size: 3
126925957 GAATATACAC
126925967 TAA TAA TAA TAA TAA TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
126926013 TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAG TAA TAA TAT TGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * * *
126926060 TACA -AA -AA GCA -AA T-G TAA T-A TAA TAA AAA TAT TAA -AA TAA
1 TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
126926100 -AG TAA TTAA -AA -AA TAA TAC T-A TGTA TAA -ATA TAAA TACA T-A
1 TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TA-A T-AA TA-A TAA
* * *
126926141 TACA TATA TAA TAA AAA TATA TAC TAA TAT TAA TAA TAA TAA TAA TAA
1 TA-A TA-A TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
126926189 TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TAA TAA TAA TAA TGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
** * *
126926235 T-A TAA -AA -AA GCA -AA T-A TAA T-A TAA TAA AAA TAT TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
126926276 -AG TAA TTAA -AA -AA TAA TAC T-A TGTA TAA -ATA TAAA TACA T-A
1 TAA TAA -TAA TAA TAA TAA TAA TAA T-AA TAA TA-A T-AA TA-A TAA
* * *
126926317 TACA TATA TAA TAA -AA TATA TAC TAA TAT TAT TAA TAA TAA TAA TAA
1 TA-A TA-A TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
126926364 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAT TGA -AA TACA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A
* * * * * *
126926412 AAA AAA CAAA TAA T-A TAA -AA -AA AAA TAT TAA -AA TAA -AG TAA
1 TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
126926453 TTAA -AA AAA TAA TAC T-A TGTA TAA -ATA TAAA TACA T-A TATG TATA
1 -TAA TAA TAA TAA TAA TAA T-AA TAA TA-A T-AA TA-A TAA TA-A TA-A
* * *
126926498 TAA TAA AAA TATA TAC TAA TATA TAA TAA TAA TAA TAA TAG TAA TAA
1 TAA TAA TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* * *
126926545 TAA TAA T-A TAA -AA -AA TAA AAA TAA AAA TAA AAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
126926583 GTGTTAGACA
Statistics
Matches: 474, Mismatches: 77, Indels: 124
0.70 0.11 0.18
Matches are distributed among these distances:
2 68 0.14
3 338 0.71
4 65 0.14
5 3 0.01
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:126926493 original size:22 final size:23
Alignment explanation
Indices: 126926457--126926552 Score: 94
Period size: 23 Copynumber: 4.3 Consensus size: 23
126926447 AAGTAATTAA
126926457 AAAAATAATACTATGTATA-AAT
1 AAAAATAATACTATGTATATAAT
*
126926479 ATAAATACATA-TATGTATATAAT
1 AAAAATA-ATACTATGTATATAAT
*
126926502 AAAAATATATACTA-ATATATAAT
1 AAAAATA-ATACTATGTATATAAT
* *
126926525 AATAATAATAATA-GTA-ATAAT
1 AAAAATAATACTATGTATATAAT
*
126926546 AATAATA
1 AAAAATA
126926553 TAAAAAATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.19
22 21 0.33
23 29 0.45
24 2 0.03
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.34
Consensus pattern (23 bp):
AAAAATAATACTATGTATATAAT
Found at i:126927160 original size:11 final size:11
Alignment explanation
Indices: 126927140--126927169 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
126927130 ATTAAAAAGG
126927140 TATATTTTTTT
1 TATATTTTTTT
126927151 T-TATTTTTTT
1 TATATTTTTTT
126927161 TATATTTTT
1 TATATTTTT
126927170 ATCTATATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (11 bp):
TATATTTTTTT
Found at i:126927186 original size:2 final size:2
Alignment explanation
Indices: 126927173--126927227 Score: 92
Period size: 2 Copynumber: 27.5 Consensus size: 2
126927163 TATTTTTATC
* *
126927173 TA TA TC TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
126927215 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
126927228 GTTGTTATTT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:126930405 original size:26 final size:27
Alignment explanation
Indices: 126930364--126930430 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 27
126930354 TCATAACATG
* * *
126930364 TAAAAAAATATTAAATTT-TTTAACTA
1 TAAAAAATTATAAAATTTATTAAACTA
*
126930390 TTAAAAATTATAAAATTTATTAAACTA
1 TAAAAAATTATAAAATTTATTAAACTA
126930417 TAAAAAATCTATAA
1 TAAAAAAT-TATAA
126930431 TCTTTAATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 15 0.44
27 14 0.41
28 5 0.15
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAAAAATTATAAAATTTATTAAACTA
Found at i:126930442 original size:2 final size:2
Alignment explanation
Indices: 126930437--126930471 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
126930427 ATAATCTTTA
126930437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
126930472 AACATAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:126939034 original size:51 final size:51
Alignment explanation
Indices: 126938977--126939078 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
126938967 TGAAAATAAG
126938977 AAAAAATATTATTAATTTTGAAGGTGATTGAATAATTTTGTATTAAAAAAT
1 AAAAAATATTATTAATTTTGAAGGTGATTGAATAATTTTGTATTAAAAAAT
126939028 AAAAAATATTATTAATTTTGAAGGTGATTGAATAATTTTGTATTAAAAAAT
1 AAAAAATATTATTAATTTTGAAGGTGATTGAATAATTTTGTATTAAAAAAT
126939079 CGAGATAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (51 bp):
AAAAAATATTATTAATTTTGAAGGTGATTGAATAATTTTGTATTAAAAAAT
Found at i:126941997 original size:13 final size:13
Alignment explanation
Indices: 126941966--126942017 Score: 52
Period size: 13 Copynumber: 4.1 Consensus size: 13
126941956 ATTTTTTTAC
126941966 CTTGAATCTT-AA
1 CTTGAATCTTAAA
*
126941978 CTCGAATCTTAAA
1 CTTGAATCTTAAA
*
126941991 CTTGAATGTTAAA
1 CTTGAATCTTAAA
* * *
126942004 TTTAAACCTTAAA
1 CTTGAATCTTAAA
126942017 C
1 C
126942018 CCCCAAAACT
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
12 9 0.29
13 22 0.71
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (13 bp):
CTTGAATCTTAAA
Found at i:126942086 original size:20 final size:21
Alignment explanation
Indices: 126942063--126942101 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
126942053 TTCAAACACG
126942063 AGATTTGA-GTTCAAAATTCA
1 AGATTTGATGTTCAAAATTCA
*
126942083 AGATTTGATGTTCGAAATT
1 AGATTTGATGTTCAAAATT
126942102 TAGATTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (21 bp):
AGATTTGATGTTCAAAATTCA
Found at i:126942178 original size:31 final size:29
Alignment explanation
Indices: 126942137--126942199 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 29
126942127 CAAAATTTTG
126942137 AATAAAAAATTATTAAAATTATATATT-AAT
1 AATAAAAAATTATTAAAA-TAT-TATTAAAT
126942167 AATATAAAAATTATTAAAATATTATTAAAT
1 AATA-AAAAATTATTAAAATATTATTAAAT
126942197 AAT
1 AAT
126942200 TAACGTACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 4 0.13
30 13 0.42
31 14 0.45
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (29 bp):
AATAAAAAATTATTAAAATATTATTAAAT
Found at i:126945938 original size:15 final size:16
Alignment explanation
Indices: 126945918--126945952 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
126945908 GAGCCTTCTC
126945918 TTCTCCCCCTCT-CCT
1 TTCTCCCCCTCTCCCT
126945933 TTCT-CCCCTCTCCCT
1 TTCTCCCCCTCTCCCT
126945948 TTCTC
1 TTCTC
126945953 TCCTTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (16 bp):
TTCTCCCCCTCTCCCT
Found at i:126946439 original size:3 final size:3
Alignment explanation
Indices: 126946431--126946498 Score: 111
Period size: 3 Copynumber: 23.0 Consensus size: 3
126946421 TGTATTTTCA
126946431 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
126946479 TAT TA- TAA TAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
126946499 ATGCATATAC
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
2 2 0.03
3 59 0.97
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:126946911 original size:2 final size:2
Alignment explanation
Indices: 126946906--126946943 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
126946896 CATATCTTTA
*
126946906 AT AT AT AT AT AT AT GT AT AT AT AT AT AT A- AGT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
126946944 TTATGTAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.94
3 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:126946927 original size:16 final size:16
Alignment explanation
Indices: 126946906--126946943 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
126946896 CATATCTTTA
*
126946906 ATATATATATATATGT
1 ATATATATATATAAGT
126946922 ATATATATATATAAGT
1 ATATATATATATAAGT
126946938 ATATAT
1 ATATAT
126946944 TTATGTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (16 bp):
ATATATATATATAAGT
Found at i:126948327 original size:22 final size:23
Alignment explanation
Indices: 126948287--126948329 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
126948277 ATGTTTGAAA
* *
126948287 ATTTTATCAGATATTTTCAAAGC
1 ATTTTATCAAATACTTTCAAAGC
126948310 ATTTT-TCAAATACTTTCAAA
1 ATTTTATCAAATACTTTCAAA
126948330 ATAGTCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (23 bp):
ATTTTATCAAATACTTTCAAAGC
Found at i:126950371 original size:26 final size:26
Alignment explanation
Indices: 126950335--126950444 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
126950325 TGATACAAAT
126950335 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126950361 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126950387 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
126950413 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
126950439 TGATAA
1 TGATAA
126950445 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:126956479 original size:31 final size:31
Alignment explanation
Indices: 126956444--126956502 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
126956434 ACATAAACTG
126956444 AATTTCAAATTTTAACATATTAAAGGGATTC
1 AATTTCAAATTTTAACATATTAAAGGGATTC
**
126956475 AATTTTGAATTTTAACATATTAAAGGGA
1 AATTTCAAATTTTAACATATTAAAGGGA
126956503 CTAAAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.07, G:0.12, T:0.39
Consensus pattern (31 bp):
AATTTCAAATTTTAACATATTAAAGGGATTC
Found at i:126959542 original size:48 final size:48
Alignment explanation
Indices: 126959467--126959561 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 48
126959457 TTATCAATTC
* * *
126959467 AAGTTATAATTTAATAAAGAATATTTATT-GTTTTAATT-TAATTTTA
1 AAGTTATAATTTAATAAAGAAAATTTATTAATTGTAATTGTAATTTTA
126959513 AAGTTATCAATATTAATATAA-AAAATTTATTAATTGTAATTGTAATTTT
1 AAGTTAT-AAT-TTAATA-AAGAAAATTTATTAATTGTAATTGTAATTTT
126959562 GGTTTTTAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
46 7 0.17
47 3 0.07
48 15 0.37
49 9 0.22
50 7 0.17
ACGTcount: A:0.43, C:0.01, G:0.06, T:0.49
Consensus pattern (48 bp):
AAGTTATAATTTAATAAAGAAAATTTATTAATTGTAATTGTAATTTTA
Found at i:126961683 original size:44 final size:44
Alignment explanation
Indices: 126961615--126961705 Score: 137
Period size: 44 Copynumber: 2.1 Consensus size: 44
126961605 ACTTTGTTTT
* * *
126961615 TTAGTTTTCCACTTAAACTTTTATTAGTATAGATTATTTTATTA
1 TTAGTTTCCCACTTAAACTCTTATTAGTATAGATTATTTTAATA
* *
126961659 TTAGTTTCCCACTTAAACTCTTATTAGTCTAGGTTATTTTAATA
1 TTAGTTTCCCACTTAAACTCTTATTAGTATAGATTATTTTAATA
126961703 TTA
1 TTA
126961706 TTTAACCTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.52
Consensus pattern (44 bp):
TTAGTTTCCCACTTAAACTCTTATTAGTATAGATTATTTTAATA
Found at i:126962061 original size:19 final size:20
Alignment explanation
Indices: 126962020--126962068 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
126962010 AATATTTAGA
*
126962020 AATTTTTAAAGGCTTTTTGT
1 AATTTTTAAAGGCGTTTTGT
* *
126962040 AATTTTTAGAGGGGTTTT-T
1 AATTTTTAAAGGCGTTTTGT
126962059 AATTTTTAAA
1 AATTTTTAAA
126962069 AATGGTCGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 10 0.40
20 15 0.60
ACGTcount: A:0.29, C:0.02, G:0.16, T:0.53
Consensus pattern (20 bp):
AATTTTTAAAGGCGTTTTGT
Found at i:126963208 original size:15 final size:15
Alignment explanation
Indices: 126963180--126963213 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
126963170 CTTTTGTCCA
126963180 AAATTAAATAAAATC
1 AAATTAAATAAAATC
* *
126963195 AAATTTAATCAAATC
1 AAATTAAATAAAATC
126963210 AAAT
1 AAAT
126963214 CTTATACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (15 bp):
AAATTAAATAAAATC
Found at i:126967761 original size:46 final size:46
Alignment explanation
Indices: 126967709--126967818 Score: 159
Period size: 46 Copynumber: 2.4 Consensus size: 46
126967699 TGACATAGTG
*
126967709 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCA-TTTCATGTCATGTTGCCATGGTA
* * **
126967755 TCTTTCAACCATGGCCTTATTCATTTCCCGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
126967801 TCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTT
126967819 GTGCATTGCC
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 4 0.07
46 54 0.93
ACGTcount: A:0.17, C:0.25, G:0.15, T:0.43
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACTCATTTCATGTCATGTTGCCATGGTA
Found at i:126967814 original size:16 final size:16
Alignment explanation
Indices: 126967793--126967849 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
126967783 CGTCATGTTG
126967793 CCATGGTATCTTTCAA
1 CCATGGTATCTTTCAA
*
126967809 CCATGG--TCTTGTGCATTG
1 CCATGGTATCTT-T-CA--A
126967827 CCATGGTATCTTTCAA
1 CCATGGTATCTTTCAA
126967843 CCATGGT
1 CCATGGT
126967850 CTTATTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 4 0.12
15 1 0.03
16 15 0.45
18 8 0.24
19 1 0.03
20 4 0.12
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (16 bp):
CCATGGTATCTTTCAA
Found at i:126967892 original size:79 final size:80
Alignment explanation
Indices: 126967744--126967897 Score: 292
Period size: 79 Copynumber: 1.9 Consensus size: 80
126967734 TTCTGTCATG
126967744 TTGCCATGGTATCTTTCAACCATGGCCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAA
1 TTGCCATGGTATCTTTCAACCATGGCCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAA
126967809 CCATGGTCTTGTGCA
66 CCATGGTCTTGTGCA
*
126967824 TTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGTCATGTTGCCATGGTATCTTTCAA
1 TTGCCATGGTATCTTTCAACCATGGCCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAA
126967888 CCATGGTCTT
66 CCATGGTCTT
126967898 ATTCTTTTCA
Statistics
Matches: 73, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
79 40 0.55
80 33 0.45
ACGTcount: A:0.18, C:0.26, G:0.17, T:0.40
Consensus pattern (80 bp):
TTGCCATGGTATCTTTCAACCATGGCCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAA
CCATGGTCTTGTGCA
Found at i:126967935 original size:46 final size:46
Alignment explanation
Indices: 126967824--126968138 Score: 434
Period size: 46 Copynumber: 6.9 Consensus size: 46
126967814 GTCTTGTGCA
** ***
126967824 TTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGTCATG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
** * * *
126967869 TTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
* ** * * *
126967915 TTGCCATGGTACCTTTCAACCATGGTCTTATTCTTTTCATGTCACG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
*
126967961 TTGCCATGGTATCTTTCAACCATGGTATTACACATTTCATATCATG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
* *
126968007 TTGCCATGGTATCTTTCAACCATGATCTTACACATTTCATAACATG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
126968053 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
* *
126968099 TTGCCATGGTATCTTTCAACCATTGTTTTACACATTTCAT
1 TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
126968139 TTCAGAAAGT
Statistics
Matches: 250, Mismatches: 19, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
45 33 0.13
46 217 0.87
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (46 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATG
Found at i:126970264 original size:11 final size:11
Alignment explanation
Indices: 126970248--126970295 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
126970238 CTTTATATAC
*
126970248 TAATAAAATAA
1 TAATAAAATAT
126970259 TAATAAAATATCT
1 TAATAAAATA--T
*
126970272 TATTAAAATAT
1 TAATAAAATAT
126970283 TAATAAAATAT
1 TAATAAAATAT
126970294 TA
1 TA
126970296 TTTATCTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
11 23 0.72
13 9 0.28
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:126975346 original size:19 final size:19
Alignment explanation
Indices: 126975307--126975346 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
126975297 AAAAAATCAC
*
126975307 ATTTTTTTACATTTAATAT
1 ATTTTTTTACATTTAAAAT
126975326 ATTTTTTTA-ATTTCAAAAT
1 ATTTTTTTACATTT-AAAAT
126975345 AT
1 AT
126975347 ATGGTGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTTTTTTACATTTAAAAT
Found at i:126976470 original size:28 final size:28
Alignment explanation
Indices: 126976425--126976481 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
126976415 TAAAATTGAA
* *
126976425 TTAAATTTTATTTAATATATAATTATTT
1 TTAAATTTTATTTAATATAAAAATATTT
*
126976453 TTAAATTTT-TTATTATATAAAAATATTT
1 TTAAATTTTATT-TAATATAAAAATATTT
126976481 T
1 T
126976482 ATTTTTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TTAAATTTTATTTAATATAAAAATATTT
Found at i:126978001 original size:33 final size:31
Alignment explanation
Indices: 126977941--126978036 Score: 102
Period size: 31 Copynumber: 3.0 Consensus size: 31
126977931 AGTAGAATGA
* *
126977941 ATGAAATATATAAATTTTTTAAGATCTAATTG
1 ATGAAATATATGAA-TTTTTATGATCTAATTG
* * *
126977973 ATGTCAATAATATGAATTTTTATTATCTAATTA
1 ATG-AAAT-ATATGAATTTTTATGATCTAATTG
* *
126978006 ATGAAATATATGAGTTTTTATGATATAATTG
1 ATGAAATATATGAATTTTTATGATCTAATTG
126978037 GCATCAATTG
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
31 20 0.38
32 6 0.12
33 20 0.38
34 6 0.12
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (31 bp):
ATGAAATATATGAATTTTTATGATCTAATTG
Found at i:126978110 original size:205 final size:205
Alignment explanation
Indices: 126977734--126978180 Score: 696
Period size: 205 Copynumber: 2.2 Consensus size: 205
126977724 TGGTAAAATT
* * * *
126977734 AATGAAAAATATGAAATCTTTTATGATCTAATTGATGTTAATAATATGAACTTTTATGATTTAAT
1 AATGAAATATAT-AAATTTTTTATGATCTAATTGATGTCAATAATATGAACTTTTATGATCTAAT
** * * *
126977799 TGGCGAAATATATTAGTTTTTATGATATAATTGATATCAATTTTAAGTGTTTTTTCCCCTTCCAA
65 TAACGAAATATATGAGTTTTTATGATATAATTGACATCAATTGTAAGTGTTTTTTCCCCTTCCAA
126977864 TTCTAGGTGCATTTGTATGGATCATGCATACTTTTTAGCTCATCCCTTGTTATATGAGTTAGTAT
130 TTCTAGGTGCATTTGTATGGATCATGCATACTTTTTAGCTCATCCCTTGTTATATGAGTTAGTAT
126977929 TGAGTAGAATG
195 TGAGTAGAATG
* * *
126977940 AATGAAATATATAAATTTTTTAAGATCTAATTGATGTCAATAATATGAATTTTTATTATCTAATT
1 AATGAAATATATAAATTTTTTATGATCTAATTGATGTCAATAATATGAACTTTTATGATCTAATT
* * *
126978005 AATGAAATATATGAGTTTTTATGATATAATTGGCATCAATTGTAAGTGTTTTTTCCCCTTCTAAT
66 AACGAAATATATGAGTTTTTATGATATAATTGACATCAATTGTAAGTGTTTTTTCCCCTTCCAAT
* *
126978070 TCTAGGTGCATTTGTATGGATCATGCATGCTTTTTAGCTCATCCCTTGTTATATGAGTTAGTGTT
131 TCTAGGTGCATTTGTATGGATCATGCATACTTTTTAGCTCATCCCTTGTTATATGAGTTAGTATT
* **
126978135 TAGTAGGGTG
196 GAGTAGAATG
*
126978145 AATGAAATATATGAATTTTTTATGATCTAATTGATG
1 AATGAAATATATAAATTTTTTATGATCTAATTGATG
126978181 AAATATACGA
Statistics
Matches: 219, Mismatches: 22, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
205 208 0.95
206 11 0.05
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.44
Consensus pattern (205 bp):
AATGAAATATATAAATTTTTTATGATCTAATTGATGTCAATAATATGAACTTTTATGATCTAATT
AACGAAATATATGAGTTTTTATGATATAATTGACATCAATTGTAAGTGTTTTTTCCCCTTCCAAT
TCTAGGTGCATTTGTATGGATCATGCATACTTTTTAGCTCATCCCTTGTTATATGAGTTAGTATT
GAGTAGAATG
Found at i:126978207 original size:31 final size:32
Alignment explanation
Indices: 126978146--126978211 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 32
126978136 AGTAGGGTGA
* * *
126978146 ATGAAATATATGAATTTTTTATGATCTAATTG
1 ATGAAATATACGAAGTTTTTATGATATAATTG
*
126978178 ATGAAATATACG-AGTTTTTGTGATATAATTG
1 ATGAAATATACGAAGTTTTTATGATATAATTG
126978209 ATG
1 ATG
126978212 TCAATTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 19 0.63
32 11 0.37
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (32 bp):
ATGAAATATACGAAGTTTTTATGATATAATTG
Found at i:126978298 original size:171 final size:172
Alignment explanation
Indices: 126977982--126978350 Score: 483
Period size: 172 Copynumber: 2.2 Consensus size: 172
126977972 GATGTCAATA
* * * *
126977982 ATATGAA-TTTTTATTATCTAATTAATGAAATATATGAGTTTTTATGATATAATTGGCATCAATT
1 ATATGAATTTTTTATGATCTAATTGATGAAATATACGAGTTTTTATGATATAATTGACATCAATT
* ** * * * * *
126978046 GTAAGTGTTTTTTCCCCTTCTAATTCTAGGTGCATTTGTATGGATCATGCATGCTTTTTAGCTCA
66 ATAAGTACTTTTCCCCCTTCCAATTCAAGGTGCATCTGTAAGGATCATGCATGCTTTTTAGCTCA
*** **
126978111 TCCCTTGTTATATGAGTTAGTGTTTAGTAGGGTGAATGAAAT
131 TCCCTTGTTATATGAGTTAGTACCTAGTAGAATGAATGAAAT
* **
126978153 ATATGAATTTTTTATGATCTAATTGATGAAATATACGAGTTTTTGTGATATAATTGATGTCAATT
1 ATATGAATTTTTTATGATCTAATTGATGAAATATACGAGTTTTTATGATATAATTGACATCAATT
* *
126978218 ATATAG-ACTTTTCCCCCTTCCCATTCAAGGTGCATCTGTAAGGATGATGCATGC-TTTTAGCTC
66 ATA-AGTACTTTTCCCCCTTCCAATTCAAGGTGCATCTGTAAGGATCATGCATGCTTTTTAGCTC
*
126978281 ATCCCTTGTTATATGAGTTAGTACCTAGTAGAATTAATGAAAT
130 ATCCCTTGTTATATGAGTTAGTACCTAGTAGAATGAATGAAAT
* *
126978324 ATATGGATTTTTTATGATCTAAGTGAT
1 ATATGAATTTTTTATGATCTAATTGAT
126978351 ATCAATTATA
Statistics
Matches: 171, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
171 78 0.46
172 91 0.53
173 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.43
Consensus pattern (172 bp):
ATATGAATTTTTTATGATCTAATTGATGAAATATACGAGTTTTTATGATATAATTGACATCAATT
ATAAGTACTTTTCCCCCTTCCAATTCAAGGTGCATCTGTAAGGATCATGCATGCTTTTTAGCTCA
TCCCTTGTTATATGAGTTAGTACCTAGTAGAATGAATGAAAT
Found at i:126981737 original size:11 final size:10
Alignment explanation
Indices: 126981717--126981741 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
126981707 GACCAACAAT
126981717 AATTAAAAAA
1 AATTAAAAAA
126981727 AATTAAAAAA
1 AATTAAAAAA
126981737 AATTA
1 AATTA
126981742 TTAAATCAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (10 bp):
AATTAAAAAA
Found at i:126985621 original size:15 final size:16
Alignment explanation
Indices: 126985596--126985625 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
126985586 TTTAAATTTT
126985596 AATTTATAAAATTAAA
1 AATTTATAAAATTAAA
126985612 AATTTA-AAAATTAA
1 AATTTATAAAATTAA
126985626 CCCTCCTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
AATTTATAAAATTAAA
Found at i:126985809 original size:122 final size:122
Alignment explanation
Indices: 126985590--126985834 Score: 429
Period size: 122 Copynumber: 2.0 Consensus size: 122
126985580 ATACCATTTA
*
126985590 AATTTTAATTTATAAAATTAAAAATTTAAAAATTAACCCTCCTACTTTTCTTATCTAAAAACTCG
1 AATTTTAATTTATAAAATTAAAAAATTAAAAATTAACCCTCCTACTTTTCTTATCTAAAAACTCG
*
126985655 ATCATATCGTTAATATTATGAGTATTTCTCATTAAAATCTGTGAACTTAGTGTATTG
66 ATCATATCGTTAATATTATGAGTATTTCTCATTAAAATCTGTCAACTTAGTGTATTG
*
126985712 AATTTTAATTTATAAAATTAAAAAATTAAAAATTAACCTCTCCTACTTTT-TTATCTAAAAATTC
1 AATTTTAATTTATAAAATTAAAAAATTAAAAATTAACC-CTCCTACTTTTCTTATCTAAAAACTC
* *
126985776 GATCATATCGTTAATATTATTAGTATTTTTCATTAAAATCTGTCAACTTAGTGTATTG
65 GATCATATCGTTAATATTATGAGTATTTCTCATTAAAATCTGTCAACTTAGTGTATTG
126985834 A
1 A
126985835 TTAGACTGTC
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
122 106 0.91
123 11 0.09
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (122 bp):
AATTTTAATTTATAAAATTAAAAAATTAAAAATTAACCCTCCTACTTTTCTTATCTAAAAACTCG
ATCATATCGTTAATATTATGAGTATTTCTCATTAAAATCTGTCAACTTAGTGTATTG
Found at i:126986166 original size:12 final size:12
Alignment explanation
Indices: 126986149--126986188 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
126986139 ATGAGCACCG
126986149 CCGCTACCGCCA
1 CCGCTACCGCCA
126986161 CCGCTACCGCCA
1 CCGCTACCGCCA
*
126986173 CCGCTACCGCCT
1 CCGCTACCGCCA
126986185 CCGC
1 CCGC
126986189 ACTCACCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.12, C:0.60, G:0.17, T:0.10
Consensus pattern (12 bp):
CCGCTACCGCCA
Found at i:126989478 original size:46 final size:46
Alignment explanation
Indices: 126989409--126989501 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
126989399 CGAGTCTCTG
*
126989409 TGAGGGTTCTCTTTCAAATTTATTTTGGTTTAGTTAGTAATTCAGT
1 TGAGGGTTCTCTTTCAAACTTATTTTGGTTTAGTTAGTAATTCAGT
*
126989455 TGAGGGTTCTCTTTCAAACTTATTTTGGTTTAGTTAGTAATTTAGT
1 TGAGGGTTCTCTTTCAAACTTATTTTGGTTTAGTTAGTAATTCAGT
126989501 T
1 T
126989502 TAGTGCTTGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.22, C:0.09, G:0.19, T:0.51
Consensus pattern (46 bp):
TGAGGGTTCTCTTTCAAACTTATTTTGGTTTAGTTAGTAATTCAGT
Found at i:126991344 original size:16 final size:16
Alignment explanation
Indices: 126991323--126991355 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
126991313 AAATATTGAG
126991323 ATAAATTATATGATTA
1 ATAAATTATATGATTA
126991339 ATAAATTATATGATTA
1 ATAAATTATATGATTA
126991355 A
1 A
126991356 AGTGTAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (16 bp):
ATAAATTATATGATTA
Found at i:126992846 original size:71 final size:71
Alignment explanation
Indices: 126992726--126993018 Score: 219
Period size: 71 Copynumber: 4.0 Consensus size: 71
126992716 TCAAATTTGA
* * *
126992726 GGTTTAACTTAGTTGATCCTTGTGAGTAGGAATTTTGAAACTTAATGGACCAAAAAAGTAAATAA
1 GGTTTAACTCAGTTGATCCTTATGAGTAGGAATGTTGAAACTTAATGGACCAAAAAAGTAAATAA
126992791 AACTTG
66 AACTTG
* * * *
126992797 GGTTTAACTCGGTTGATTCTTATGAGTAGGAATGTTGAAATTTAGTGGACCAAAAAAGTAAATAA
1 GGTTTAACTCAGTTGATCCTTATGAGTAGGAATGTTGAAACTTAATGGACCAAAAAAGTAAATAA
**
126992862 AACGAG
66 AACTTG
** * * * * * * * * *
126992868 TTTTTAAACTTGGAGTTTAATTTAATAGGTTCTTGTGAATAAGAATGTTGAAATTTAGTGAACCA
1 GGTTT-AAC-T-CAG-------T--T-GATCCTTATGAGTAGGAATGTTGAAACTTAATGGACCA
*
126992933 AAAAA-AAAATAAAACTTG
53 AAAAAGTAAATAAAACTTG
* * * * * *
126992951 GGTTTAACTCGGTTGATTCTTGTGAGTAGGAATGTTGAAATTTAGTGGACCAGAAAAGTAAATAA
1 GGTTTAACTCAGTTGATCCTTATGAGTAGGAATGTTGAAACTTAATGGACCAAAAAAGTAAATAA
126993016 AAC
66 AAC
126993019 AGATTTTAAA
Statistics
Matches: 177, Mismatches: 31, Indels: 28
0.75 0.13 0.12
Matches are distributed among these distances:
70 38 0.21
71 75 0.42
72 3 0.02
73 2 0.01
74 1 0.01
80 1 0.01
81 2 0.01
82 3 0.02
83 14 0.08
84 38 0.21
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (71 bp):
GGTTTAACTCAGTTGATCCTTATGAGTAGGAATGTTGAAACTTAATGGACCAAAAAAGTAAATAA
AACTTG
Found at i:126992968 original size:154 final size:153
Alignment explanation
Indices: 126992676--126993109 Score: 546
Period size: 154 Copynumber: 2.8 Consensus size: 153
126992666 TTGTGAGTAG
* ** * * * * * *
126992676 TGAAATTTAGTGGACCAAAAAGGTAAATAACCCAAGTCCTTCAAA-TTTGAGGTTTAACTTAGTT
1 TGAAATTTAGTGGACCAAAAAAGTAAATAAAAC-AGT-TTTTAAACTTGGA-GTTTAATTTAATA
* * * * * * *
126992740 GATCCTTGTGAGTAGGAATTTTGAAACTTAATGGACCAAAAAAGTAAATAAAACTTGGGTTTAAC
63 GGTTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAAAAAA-TAAATAAAACTTGGGTTTAAC
126992805 TCGGTTGATTCTTATGAGTAGGAATGT
127 TCGGTTGATTCTTATGAGTAGGAATGT
126992832 TGAAATTTAGTGGACCAAAAAAGTAAATAAAACGAGTTTTTAAACTTGGAGTTTAATTTAATAGG
1 TGAAATTTAGTGGACCAAAAAAGTAAATAAAAC-AGTTTTTAAACTTGGAGTTTAATTTAATAGG
* *
126992897 TTCTTGTGAATAAGAATGTTGAAATTTAGTGAACCAAAAAAAAAATAAAACTTGGGTTTAACTCG
65 TTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAAAAAATAAATAAAACTTGGGTTTAACTCG
*
126992962 GTTGATTCTTGTGAGTAGGAATGT
130 GTTGATTCTTATGAGTAGGAATGT
* *
126992986 TGAAATTTAGTGGACCAGAAAAGTAAATAAAACAGATTTTAAACTTGGAGTTTAATTTAATAGGT
1 TGAAATTTAGTGGACCAAAAAAGTAAATAAAACAGTTTTTAAACTTGGAG-----TTT-A-A--T
126993051 TTAATAGGTTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAAAAAATAAATAAAAC
57 TTAATAGGTTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAAAAAATAAATAAAAC
126993110 AAATTTTTAA
Statistics
Matches: 244, Mismatches: 24, Indels: 14
0.87 0.09 0.05
Matches are distributed among these distances:
153 16 0.07
154 78 0.32
155 50 0.20
156 37 0.15
158 3 0.01
159 1 0.00
160 1 0.00
162 58 0.24
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.32
Consensus pattern (153 bp):
TGAAATTTAGTGGACCAAAAAAGTAAATAAAACAGTTTTTAAACTTGGAGTTTAATTTAATAGGT
TCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAAAAAATAAATAAAACTTGGGTTTAACTCGG
TTGATTCTTATGAGTAGGAATGT
Found at i:126993027 original size:70 final size:70
Alignment explanation
Indices: 126992897--126993027 Score: 174
Period size: 70 Copynumber: 1.9 Consensus size: 70
126992887 ATTTAATAGG
* *
126992897 TTCTTGTGAATAAGAATGTTGAAATTTAGTGAACCAAAAAAAAAATAAAACTTGGGTTTAACTCG
1 TTCTTGTGAATAAGAATGTTGAAATTTAGTGAACCAAAAAAAAAATAAAACTAGAGTTTAACTCG
126992962 GTTGA
66 GTTGA
* * * ** *
126992967 TTCTTGTGAGTAGGAATGTTGAAATTTAGTGGACCAGAAAAGTAAATAAAAC-AGATTTTAA
1 TTCTTGTGAATAAGAATGTTGAAATTTAGTGAACCA-AAAAAAAAATAAAACTAGAGTTTAA
126993028 ACTTGGAGTT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
70 39 0.75
71 13 0.25
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (70 bp):
TTCTTGTGAATAAGAATGTTGAAATTTAGTGAACCAAAAAAAAAATAAAACTAGAGTTTAACTCG
GTTGA
Found at i:126993132 original size:92 final size:92
Alignment explanation
Indices: 126992967--126993138 Score: 258
Period size: 92 Copynumber: 1.9 Consensus size: 92
126992957 ACTCGGTTGA
* * * *
126992967 TTCTTGTGAGTAGGAATGTTGAAATTTAGTGGACCAGAAAAGTAAATAAAACAGATTTTAAACTT
1 TTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAGAAAAATAAATAAAACAAATTTTAAACTT
*
126993032 GGAGTTTAATTTAATAGGTTTAATAGG
66 GGAGTTTAACTTAATAGGTTTAATAGG
*
126993059 TTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCA-AAAAATAAATAAAACAAATTTTTAAATT
1 TTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAGAAAAATAAATAAAACAAA-TTTTAAACT
126993123 TGG-GATTTAACTTAAT
65 TGGAG-TTTAACTTAAT
126993139 TGATTCTGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
91 17 0.24
92 55 0.76
ACGTcount: A:0.41, C:0.06, G:0.18, T:0.35
Consensus pattern (92 bp):
TTCTTGTGAGTAAGAATGTTGAAATTTAGTGAACCAGAAAAATAAATAAAACAAATTTTAAACTT
GGAGTTTAACTTAATAGGTTTAATAGG
Found at i:126993559 original size:109 final size:109
Alignment explanation
Indices: 126993292--126993647 Score: 459
Period size: 109 Copynumber: 3.3 Consensus size: 109
126993282 AGACTTCCTT
* * * * *
126993292 CATTTGGTTTATTAATATGATTATTTGAACACACTCGTATTTCAATTTACGTTAATGCCTTATTT
1 CATTTAGTTTATTAATATGATCATTTGAACACACTAGTATTTCAATTTATGATAATGCCTTATTT
* * * *
126993357 GGGAAGGCAACAATGTATTGTAGCAATTGTGTCTAGGTTTAGTC
66 GGGAGGGCAACAAAGTATTGTGGCAATTGTGTCTAGGTTTAGCC
*
126993401 CATTT-GATTTATTAATATGATCATTTGAACACACTAGTATTTCAATTTATAATAATGCCTTATT
1 CATTTAG-TTTATTAATATGATCATTTGAACACACTAGTATTTCAATTTATGATAATGCCTTATT
* *
126993465 TGAGAGGGCAACAAAGTATTGTGGCAATTGTGTCTAGGCTTAGCC
65 TGGGAGGGCAACAAAGTATTGTGGCAATTGTGTCTAGGTTTAGCC
* * * * *
126993510 CATTTAGTTTATTAATATGATTATTTGAACACCCTTGTATTTCAATTTATGCTAATACC---TTT
1 CATTTAGTTTATTAATATGATCATTTGAACACACTAGTATTTCAATTTATGATAATGCCTTATTT
* ** * *
126993572 GGGAGGGGAACAAAGTACTCATGGTAGTTGTGTCTAGGTTTAGCC
66 GGGAGGGCAACAAAGTA-TTGTGGCAATTGTGTCTAGGTTTAGCC
*
126993617 CATTTAGTTTATTATTATGATCATTTGAACA
1 CATTTAGTTTATTAATATGATCATTTGAACA
126993648 TGTCCGTATT
Statistics
Matches: 218, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
106 18 0.08
107 51 0.23
108 1 0.00
109 147 0.67
110 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.40
Consensus pattern (109 bp):
CATTTAGTTTATTAATATGATCATTTGAACACACTAGTATTTCAATTTATGATAATGCCTTATTT
GGGAGGGCAACAAAGTATTGTGGCAATTGTGTCTAGGTTTAGCC
Found at i:127002770 original size:15 final size:15
Alignment explanation
Indices: 127002750--127002778 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
127002740 TATAATAATG
127002750 AGGAGAAGGAGAAGA
1 AGGAGAAGGAGAAGA
127002765 AGGAGAAGGAGAAG
1 AGGAGAAGGAGAAG
127002779 TAGAAGAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (15 bp):
AGGAGAAGGAGAAGA
Found at i:127002786 original size:15 final size:15
Alignment explanation
Indices: 127002753--127002787 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
127002743 AATAATGAGG
*
127002753 AGAAGGAGAAGAAGG
1 AGAAGGAGAAGAAGA
*
127002768 AGAAGGAGAAGTAGA
1 AGAAGGAGAAGAAGA
127002783 AGAAG
1 AGAAG
127002788 CAATCTAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.43, T:0.03
Consensus pattern (15 bp):
AGAAGGAGAAGAAGA
Found at i:127010907 original size:81 final size:81
Alignment explanation
Indices: 127010768--127010923 Score: 244
Period size: 81 Copynumber: 1.9 Consensus size: 81
127010758 AGGAAGGACT
* *
127010768 ATGTTTATGAGTTACATCTCTAATGATCTATTCAAAAAAAACTTGGCTATTTTTTAAAAAGATAT
1 ATGTTTATGAGTTACATCTCTAATGATCTATTCAAAAAAAACTTGGCTATTGTATAAAAAGATAT
*
127010833 TTAGAATTCAAGAGTA
66 CTAGAATTCAAGAGTA
*
127010849 ATGTTTAT-ACGTTGCATCTCTAATGATCTATT-AGAAAAAAACTTGGCTATTGTATAAAAAGAT
1 ATGTTTATGA-GTTACATCTCTAATGATCTATTCA-AAAAAAACTTGGCTATTGTATAAAAAGAT
127010912 ATCTAGAATTCA
64 ATCTAGAATTCA
127010924 GTAAATGAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
80 2 0.03
81 67 0.97
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (81 bp):
ATGTTTATGAGTTACATCTCTAATGATCTATTCAAAAAAAACTTGGCTATTGTATAAAAAGATAT
CTAGAATTCAAGAGTA
Found at i:127016122 original size:47 final size:47
Alignment explanation
Indices: 127016058--127016168 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
127016048 GACATTGAGT
*
127016058 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
127016105 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
127016152 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
127016169 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:127023379 original size:47 final size:47
Alignment explanation
Indices: 127023315--127023425 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
127023305 GACATTGAGT
*
127023315 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
127023362 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
127023409 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
127023426 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:127025072 original size:21 final size:19
Alignment explanation
Indices: 127025035--127025074 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
127025025 AGCATAAATT
127025035 ATATAATATATATAACATA
1 ATATAATATATATAACATA
*
127025054 ATATAATCTATTATAAACATA
1 ATATAATATA-TAT-AACATA
127025075 GAAAATGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (19 bp):
ATATAATATATATAACATA
Found at i:127028349 original size:26 final size:26
Alignment explanation
Indices: 127028317--127028476 Score: 214
Period size: 26 Copynumber: 6.2 Consensus size: 26
127028307 TGAAATGCCC
127028317 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
127028343 ATAATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
127028369 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
127028395 TTCATGGAACATTTACTTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
127028421 ATCATTGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
127028447 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
127028473 ATCA
1 ATCA
127028477 ATTTGTACCA
Statistics
Matches: 116, Mismatches: 17, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
25 2 0.02
26 114 0.98
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:127028394 original size:52 final size:52
Alignment explanation
Indices: 127028317--127028476 Score: 257
Period size: 52 Copynumber: 3.1 Consensus size: 52
127028307 TGAAATGCCC
* * *
127028317 ATCATGGAACATTTACCTAAACCATTATAATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
* *
127028369 ATCATGGAATATTTACCTAATCCATTTTCATGGAACATTTACTTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
* *
127028421 ATCATTGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACACATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
127028473 ATCA
1 ATCA
127028477 ATTTGTACCA
Statistics
Matches: 99, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 99 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.35
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:127029190 original size:17 final size:17
Alignment explanation
Indices: 127029168--127029201 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
127029158 TTATATTTGA
127029168 TTTTTTAAAAAAATAAT
1 TTTTTTAAAAAAATAAT
*
127029185 TTTTTTAAAAATATAAT
1 TTTTTTAAAAAAATAAT
127029202 ACACTAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTTTTAAAAAAATAAT
Found at i:127034844 original size:2 final size:2
Alignment explanation
Indices: 127034837--127034861 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
127034827 AGTGTATGTG
127034837 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
127034862 GTGTATGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:127043561 original size:31 final size:31
Alignment explanation
Indices: 127043517--127043575 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
127043507 AAAAAGCTTG
*
127043517 ATAACCCAGTGACTTAAATAAAAACTTTCAA
1 ATAACCCAATGACTTAAATAAAAACTTTCAA
* * *
127043548 ATAATCCAATGACTTAGATGAAAACTTT
1 ATAACCCAATGACTTAAATAAAAACTTT
127043576 TGAATAGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.08, T:0.29
Consensus pattern (31 bp):
ATAACCCAATGACTTAAATAAAAACTTTCAA
Found at i:127048284 original size:2 final size:2
Alignment explanation
Indices: 127048269--127048304 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
127048259 CATATCTCAT
*
127048269 TA TA TA T- TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
127048305 TAGTAGGAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:127053581 original size:95 final size:94
Alignment explanation
Indices: 127053410--127053602 Score: 269
Period size: 95 Copynumber: 2.0 Consensus size: 94
127053400 ACTATTTGGC
* ** * * * * *
127053410 AGTTAAGTTTGGCTTCAATTTTCAAATTGGTGCTTGAATTTTTTTTTTCCAATTTGGTACATGAG
1 AGTTAAGTTTGGCTTCAATCTTCAAATTGGCACCTAAATTTTTTTGTCCCAACTTGGTACATGAG
*
127053475 TTTGGCCACAATGTTCATTTTGGTACCTG
66 TTTGGCCACAATGTTCATTTTGGTACCTA
* *
127053504 AGTTGAGTTTGGCTTCAATCTTCAATTTGGCACCTAAATTCTTTTTGTCCCAACTTGGTACATGA
1 AGTTAAGTTTGGCTTCAATCTTCAAATTGGCACCTAAATT-TTTTTGTCCCAACTTGGTACATGA
*
127053569 GTTTGGCTACAATGTTCATTTTGGTACCTA
65 GTTTGGCCACAATGTTCATTTTGGTACCTA
127053599 AGTT
1 AGTT
127053603 TTTTTGTTTT
Statistics
Matches: 86, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
94 33 0.38
95 53 0.62
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.44
Consensus pattern (94 bp):
AGTTAAGTTTGGCTTCAATCTTCAAATTGGCACCTAAATTTTTTTGTCCCAACTTGGTACATGAG
TTTGGCCACAATGTTCATTTTGGTACCTA
Found at i:127055871 original size:20 final size:19
Alignment explanation
Indices: 127055846--127055903 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
127055836 TTTCAATCGA
127055846 TTTTTTTAACGGTAATGGG
1 TTTTTTTAACGGTAATGGG
* * *
127055865 CTTTTTTTAACAGCAATGAG
1 -TTTTTTTAACGGTAATGGG
*
127055885 TTTTTTTAAATGGTAATGG
1 TTTTTTT-AACGGTAATGG
127055904 AATGAACTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.47
Consensus pattern (19 bp):
TTTTTTTAACGGTAATGGG
Found at i:127067799 original size:28 final size:28
Alignment explanation
Indices: 127067763--127067834 Score: 83
Period size: 28 Copynumber: 2.5 Consensus size: 28
127067753 TTAAGATGAT
*
127067763 TATATAAAAAAATTTAATAAATAAAA-AA
1 TATATAAAAATATTTAAT-AATAAAATAA
* * *
127067791 TATATAAAATTATTAAATATTAAAATAA
1 TATATAAAAATATTTAATAATAAAATAA
127067819 TATAATAAAAATATTT
1 TAT-ATAAAAATATTT
127067835 TTTTTAAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 6 0.17
28 20 0.56
29 10 0.28
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (28 bp):
TATATAAAAATATTTAATAATAAAATAA
Found at i:127070431 original size:3 final size:3
Alignment explanation
Indices: 127070423--127070504 Score: 112
Period size: 3 Copynumber: 27.7 Consensus size: 3
127070413 AATTAATTTC
* * * *
127070423 ATT ATT ATT ATT ATC ATT ATT ATT ACT ATT AGT ATT ATT -TT TTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
127070470 ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
127070505 CTTTTTAATT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
2 2 0.03
3 67 0.97
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:127071803 original size:22 final size:23
Alignment explanation
Indices: 127071756--127071803 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
127071746 CATTCAAGAT
** *
127071756 AAAATAATATATTAAACTCTTTA
1 AAAATAATATATTAAACAATTCA
127071779 AAAATAATATA-TAAACAATTCA
1 AAAATAATATATTAAACAATTCA
127071801 AAA
1 AAA
127071804 TATATAATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.31
Consensus pattern (23 bp):
AAAATAATATATTAAACAATTCA
Found at i:127071847 original size:27 final size:25
Alignment explanation
Indices: 127071782--127071875 Score: 73
Period size: 25 Copynumber: 3.7 Consensus size: 25
127071772 CTCTTTAAAA
* *
127071782 ATAATATATAAACAATTCAAAATAT
1 ATAATATATAAAAAATTCAAAATAC
* * *
127071807 ATAATGTGTAAAAAAAGTTTAAAATAC
1 ATAATATAT-AAAAAA-TTCAAAATAC
* * *
127071834 ATAATATATGAAAATATT-AAAGTAA
1 ATAATATAT-AAAAAATTCAAAATAC
*
127071859 ATAATGTATAAAAAATT
1 ATAATATATAAAAAATT
127071876 GAAATGAGCG
Statistics
Matches: 54, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
24 7 0.13
25 20 0.37
26 7 0.13
27 20 0.37
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (25 bp):
ATAATATATAAAAAATTCAAAATAC
Found at i:127071853 original size:25 final size:24
Alignment explanation
Indices: 127071780--127071936 Score: 82
Period size: 24 Copynumber: 6.2 Consensus size: 24
127071770 AACTCTTTAA
*
127071780 AAATAATATATAAACAATTCAAAAT
1 AAATAATATATAAAAAATT-AAAAT
* * *
127071805 ATATAATGTGTAAAAAAAGTTTAAAAT
1 AAATAATATAT-AAAAAA--TTAAAAT
* * *
127071832 ACATAATATATGAAAATATTAAAGT
1 AAATAATATAT-AAAAAATTAAAAT
* *
127071857 AAATAATGTATAAAAAATTGAAAT
1 AAATAATATATAAAAAATTAAAAT
* **** *
127071881 GAGCGTTATATAAAAAGTTAAAAT
1 AAATAATATATAAAAAATTAAAAT
* *
127071905 AGATAATA-ACAAAAAATGTAAAAAAT
1 AAATAATATATAAAAAAT-T--AAAAT
127071931 AAATAA
1 AAATAA
127071937 ATAAATAGAT
Statistics
Matches: 94, Mismatches: 32, Indels: 11
0.69 0.23 0.08
Matches are distributed among these distances:
23 7 0.07
24 29 0.31
25 23 0.24
26 15 0.16
27 18 0.19
28 2 0.02
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (24 bp):
AAATAATATATAAAAAATTAAAAT
Found at i:127072071 original size:29 final size:28
Alignment explanation
Indices: 127072005--127072109 Score: 83
Period size: 29 Copynumber: 3.6 Consensus size: 28
127071995 ATAAAATTAG
* *
127072005 TATATAAATAGAAATAGA-AATATAATAA
1 TATATAAATATAAATAGATAA-ATAAAAA
*
127072033 TAGTAGAAATATAAATAGATAAATAAAAA
1 TA-TATAAATATAAATAGATAAATAAAAA
*
127072062 TTATATAAATA-ATAATAGTATTAGAATAACAA
1 -TATATAAATATA-AATAG-A-TA-AATAAAAA
127072094 -A-ATAAATATAAATAGA
1 TATATAAATATAAATAGA
127072110 AACATAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
28 4 0.06
29 44 0.69
30 7 0.11
31 2 0.03
32 7 0.11
ACGTcount: A:0.63, C:0.01, G:0.08, T:0.29
Consensus pattern (28 bp):
TATATAAATATAAATAGATAAATAAAAA
Found at i:127076651 original size:3 final size:3
Alignment explanation
Indices: 127076643--127076764 Score: 102
Period size: 3 Copynumber: 40.3 Consensus size: 3
127076633 TTAATTAATT
* * *
127076643 TTA TTA TTA TTA TTT TTA CTA TTA TTTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* * * * * *
127076689 CTA TTA TTA TT- TTT TTA CTA TTA TTA TTTA TTA TCA TTA TCA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * * *
127076734 TTA CTA TTA TTA TTA TCA TTT TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
127076765 AATTTTTTTA
Statistics
Matches: 91, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
2 2 0.02
3 83 0.91
4 6 0.07
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:127076723 original size:48 final size:46
Alignment explanation
Indices: 127076644--127076749 Score: 160
Period size: 48 Copynumber: 2.3 Consensus size: 46
127076634 TAATTAATTT
* *
127076644 TATTATTATTATTTTTACTATTATTTATTATCATTATTATTATTAC
1 TATTATTATTATTTTTACTATTATTTATTATCATTATCAATATTAC
127076690 TATTATTATT-TTTTTACTATTATTATTTATTATCATTATCAATATTAC
1 TATTATTATTATTTTTAC---TATTATTTATTATCATTATCAATATTAC
127076738 TATTATTATTAT
1 TATTATTATTAT
127076750 CATTTTTATT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
45 7 0.13
46 10 0.19
48 36 0.67
49 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (46 bp):
TATTATTATTATTTTTACTATTATTTATTATCATTATCAATATTAC
Found at i:127079641 original size:88 final size:88
Alignment explanation
Indices: 127079592--127080452 Score: 1047
Period size: 88 Copynumber: 9.8 Consensus size: 88
127079582 GCCTGTTCCC
* * **
127079592 CTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGTCTGTTCCCCTACTGCTTAGGGAGATAAAA
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
* **
127079657 CCCACCGTCTTCGATCTGCTCCA
66 CTCACATTCTTCGATCTGCTCCA
** *
127079680 CTACTATTTAGGGAGATAAGATCTGTAATTTTCAGCCTATTCCCCTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
*
127079745 CTCACCA-TCTTCAATCTGCTCCA
66 CTCA-CATTCTTCGATCTGCTCCA
* * * *
127079768 CTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTTACTACTTAGGAAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
*
127079833 CTCACCA-TCTTCAATCTGCTCCA
66 CTCA-CATTCTTCGATCTGCTCCA
* * *
127079856 TTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGTC-GTTCCCCTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
127079920 CTCAC-TATCTTCGATCTGCTCCA
66 CTCACAT-TCTTCGATCTGCTCCA
* * * * *
127079943 CTACTGCTTAGGAAGATAAGATTTGTAATTTTCAGCCTATTCCTCTATTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
127080008 CTCACCA-TCTTCGATCTGCTCCA
66 CTCA-CATTCTTCGATCTGCTCCA
* * * * *
127080031 CTACTGCTTAGGGATATAAAATCTATAATTTTTTAGCCTGTTCCACTACTGCTTAGGGAGATAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAA-TTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAG
*** * *
127080096 GCTTGTAGTCTTCGATTTGCTCCA
65 GCTCACATTCTTCGATCTGCTCCA
* * *
127080120 CTACTGCTTAAGGAGATAAGATCTGGAATTTTTAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
** *
127080185 CTCACCGTCTTCGATTTGCTCCA
66 CTCACATTCTTCGATCTGCTCCA
* * ** ** *
127080208 CTACTACTTAGGGAGATAAGATCTATAATCTTT-AGCCTACTCTACTACTGCTTAGGGAGGTAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAAT-TTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAG
* *
127080272 GCTCACCA-TCTTCGATTTTCTCCA
65 GCTCA-CATTCTTCGATCTGCTCCA
*
127080296 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCACCCTGTTCCCCTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
*
127080361 CTCACCA-TCTTCGATCTACTCCA
66 CTCA-CATTCTTCGATCTGCTCCA
** ** ** * *
127080384 CTACTGCTTAGGGAGATAAGATCTACAATCTTT-AGCCTACTCTACTACTACTTAAGGAGATAAG
1 CTACTGCTTAGGGAGATAAGATCTGTAAT-TTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAG
127080448 GCTCA
65 GCTCA
127080453 TCTAAATTTA
Statistics
Matches: 677, Mismatches: 84, Indels: 24
0.86 0.11 0.03
Matches are distributed among these distances:
86 1 0.00
87 78 0.12
88 516 0.76
89 82 0.12
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (88 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
CTCACATTCTTCGATCTGCTCCA
Found at i:127080404 original size:176 final size:176
Alignment explanation
Indices: 127079592--127080452 Score: 1181
Period size: 176 Copynumber: 4.9 Consensus size: 176
127079582 GCCTGTTCCC
* * **
127079592 CTACTGCTTAGAGAGATAAGATCTGTAATTTTCAGTCTGTTCCCCTACTGCTTAGGGAGATAAAA
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
* * ** * *
127079657 CCCACCGTCTTCGATCTGCTCCACTACTATTTAGGGAGATAAGATCTGTAAT-TTTCAGCCTATT
66 CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTT-AGCCTACT
* *
127079721 CCCCTACTGCTTAGGGAGATAAGGCTCACCATCTTCAATCTGCTCCA
130 CCACTACTGCTTAGGGAGATAAGGCTCACCATCTTCGATCTGCTCCA
* * * *
127079768 CTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTCCCTTACTACTTAGGAAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
* * * * *
127079833 CTCACCATCTTCAATCTGCTCCATTACTGCTTAGGGAGATAAGATCTGTAATTTTTAGTCGT--T
66 CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAG-CCTACT
* *
127079896 CCCCTACTGCTTAGGGAGATAAGGCTCACTATCTTCGATCTGCTCCA
130 CCACTACTGCTTAGGGAGATAAGGCTCACCATCTTCGATCTGCTCCA
* * * * *
127079943 CTACTGCTTAGGAAGATAAGATTTGTAATTTTCAGCCTATTCCTCTATTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
* * * **
127080008 CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGATATAAAATCTATAATTTTTTAGCCTGTT
66 CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAA-TCTTTAGCCTACT
*** *
127080073 CCACTACTGCTTAGGGAGATAAGGCT-TGTAGTCTTCGATTTGCTCCA
130 CCACTACTGCTTAGGGAGATAAGGCTCACCA-TCTTCGATCTGCTCCA
* * *
127080120 CTACTGCTTAAGGAGATAAGATCTGGAATTTTTAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
* * *
127080185 CTCACCGTCTTCGATTTGCTCCACTACTACTTAGGGAGATAAGATCTATAATCTTTAGCCTACTC
66 CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAGCCTACTC
* * * *
127080250 TACTACTGCTTAGGGAGGTAAGGCTCACCATCTTCGATTTTCTCCA
131 CACTACTGCTTAGGGAGATAAGGCTCACCATCTTCGATCTGCTCCA
*
127080296 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCACCCTGTTCCCCTACTGCTTAGGGAGATAAGG
1 CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
* *
127080361 CTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAGCCTACTC
66 CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAGCCTACTC
* * *
127080426 TACTACTACTTAAGGAGATAAGGCTCA
131 CACTACTGCTTAGGGAGATAAGGCTCA
127080453 TCTAAATTTA
Statistics
Matches: 608, Mismatches: 70, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
175 150 0.25
176 308 0.51
177 150 0.25
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (176 bp):
CTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTCCCCTACTGCTTAGGGAGATAAGG
CTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTTAGCCTACTC
CACTACTGCTTAGGGAGATAAGGCTCACCATCTTCGATCTGCTCCA
Found at i:127080415 original size:44 final size:45
Alignment explanation
Indices: 127079454--127080447 Score: 560
Period size: 44 Copynumber: 22.6 Consensus size: 45
127079444 ATTTTGATCC
* * * *
127079454 GCTCCACTACTGCTTAGGGATATAAGATCTATAATTTTCCA-TCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * **
127079498 GTTCCACTACTGCTTAGGGAGATAAG-GCTCGCCGTCTTCGA-TCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* ** *
127079542 GCTCCATTACTGCTTAGGGAGATAAGATCTGA-AAT-TTTTAGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* * * ** *
127079586 GTTCCCCTACTGCTTAGAGAGATAAGATCTGTAATTTTC-AGTCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * * * **
127079630 GTTCCCCTACTGCTTAGGGAGATAAAACCCACCGTCTTCGA-TCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
** ** * *
127079674 GCTCCACTACTATTTAGGGAGATAAGATCTGTAATTTTC-AGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
** * * * *
127079718 ATTCCCCTACTGCTTAGGGAGATAAG-GCTCACCATCTTC-AATCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
** ** *
127079762 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TTTTAGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * * * *
127079806 GTTCC-CTTACTACTTAGGAAGATAAG-GCTCACCATCTTC-AATCT
1 GCTCCAC-TACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* ** **
127079850 GCTCCATTACTGCTTAGGGAGATAAGATCTGTAAT-TTTTAGTC-
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * *
127079893 GTTCCCCTACTGCTTAGGGAGATAAG-GCTCACTATCTTCGA-TCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* * ** * *
127079937 GCTCCACTACTGCTTAGGAAGATAAGATTTGTAATTTTC-AGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
** * * * *
127079981 ATTCCTCTATTGCTTAGGGAGATAAG-GCTCACCATCTTCGA-TCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* * * * ** *
127080025 GCTCCACTACTGCTTAGGGATATAAAATCTATAATTTTTTAGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * ** * *
127080070 GTTCCACTACTGCTTAGGGAGATAAG-GCTTGTAGTCTTCGA-TTT
1 GCTCCACTACTGCTTAGGGAGATAAGATC-TACAATCTTCGAGTCT
* ** ** *
127080114 GCTCCACTACTGCTTAAGGAGATAAGATCTGGAAT-TTTTAGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * ** *
127080158 GTTCCCCTACTGCTTAGGGAGATAAG-GCTCACCGTCTTCGA-TTT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* * * *
127080202 GCTCCACTACTACTTAGGGAGATAAGATCTATAATCTT-TAGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * * * *
127080246 ACTCTACTACTGCTTAGGGAGGTAAG-GCTCACCATCTTCGA-TTT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* ** * **
127080290 TCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTC-ACCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * *
127080334 GTTCCCCTACTGCTTAGGGAGATAAG-GCTCACCATCTTCGA-TCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCGAGTCT
* * *
127080378 ACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT-TAGCCT
1 GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
* * * *
127080422 ACTCTACTACTACTTAAGGAGATAAG
1 GCTCCACTACTGCTTAGGGAGATAAG
127080448 GCTCATCTAA
Statistics
Matches: 695, Mismatches: 215, Indels: 80
0.70 0.22 0.08
Matches are distributed among these distances:
42 2 0.00
43 56 0.08
44 578 0.83
45 59 0.08
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.33
Consensus pattern (45 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCGAGTCT
Found at i:127083824 original size:11 final size:11
Alignment explanation
Indices: 127083810--127083850 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
127083800 TTATTTTTCC
127083810 CTATTTTGCTA
1 CTATTTTGCTA
*
127083821 CTATTTTACTA
1 CTATTTTGCTA
* *
127083832 TTATGTTGCTA
1 CTATTTTGCTA
127083843 CTATTTTG
1 CTATTTTG
127083851 TTGTTATTGT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.56
Consensus pattern (11 bp):
CTATTTTGCTA
Found at i:127083925 original size:30 final size:30
Alignment explanation
Indices: 127083891--127083948 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
127083881 ATTTTATTGT
*
127083891 TAATTTTTTTATTACTTTAAAGACATTTTC
1 TAATTTTGTTATTACTTTAAAGACATTTTC
* * *
127083921 TAATTTTGTTATTATTTTAGAGGCATTT
1 TAATTTTGTTATTACTTTAAAGACATTT
127083949 GCTTGTTAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.57
Consensus pattern (30 bp):
TAATTTTGTTATTACTTTAAAGACATTTTC
Found at i:127089551 original size:14 final size:13
Alignment explanation
Indices: 127089532--127089561 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
127089522 GAAAAGTGAG
127089532 AAAAAAAGAAAAGA
1 AAAAAAAG-AAAGA
127089546 AAAAAAAGAAAGA
1 AAAAAAAGAAAGA
127089559 AAA
1 AAA
127089562 TTGGAGCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAGA
Found at i:127089830 original size:39 final size:39
Alignment explanation
Indices: 127089775--127089852 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
127089765 AGAAAGACGC
127089775 AAGTTCAGGTGCGTTGGAGTGCATTATCCTCTTATTTAT
1 AAGTTCAGGTGCGTTGGAGTGCATTATCCTCTTATTTAT
*
127089814 AAGTTCAGGTGTGTTGGAGTGCATTATCCTCTTATTTAT
1 AAGTTCAGGTGCGTTGGAGTGCATTATCCTCTTATTTAT
127089853 GGGTTAAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.21, C:0.14, G:0.23, T:0.42
Consensus pattern (39 bp):
AAGTTCAGGTGCGTTGGAGTGCATTATCCTCTTATTTAT
Found at i:127094144 original size:21 final size:21
Alignment explanation
Indices: 127094111--127094159 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
127094101 AAAAAGATAC
127094111 CAAG-TTA-ACTTACCATTTT
1 CAAGTTTAGACTTACCATTTT
*
127094130 CAAGTTTAGACTTACGATTTT
1 CAAGTTTAGACTTACCATTTT
127094151 CAAGTTTAG
1 CAAGTTTAG
127094160 GTACTAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 4 0.15
20 3 0.11
21 20 0.74
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (21 bp):
CAAGTTTAGACTTACCATTTT
Found at i:127094303 original size:24 final size:24
Alignment explanation
Indices: 127094260--127094307 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
127094250 TAATCAACTT
**
127094260 TATAAATTTTTAATTTTTTAATTTA
1 TATAAATTTTTAATAATTT-ATTTA
127094285 TATAAA-TTTTAATAATTTATTTA
1 TATAAATTTTTAATAATTTATTTA
127094308 ATTAAAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.24
24 10 0.48
25 6 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATAAATTTTTAATAATTTATTTA
Found at i:127097088 original size:47 final size:47
Alignment explanation
Indices: 127097034--127097127 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
127097024 CTGATATCTT
*
127097034 ACACTTAAACCCGAGTTTGAGTAACATAACTATATTAAATCTCTTCA
1 ACACTTAAACCCGAATTTGAGTAACATAACTATATTAAATCTCTTCA
* *
127097081 ACACTTAAACCCGAATTTGAGTAACATAACTGTATTAAATCTGTTCA
1 ACACTTAAACCCGAATTTGAGTAACATAACTATATTAAATCTCTTCA
127097128 TGACTTTCTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (47 bp):
ACACTTAAACCCGAATTTGAGTAACATAACTATATTAAATCTCTTCA
Found at i:127101993 original size:52 final size:52
Alignment explanation
Indices: 127101935--127102040 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
127101925 AAGAAAATGA
127101935 TAGTTTAAATAATGCTTTATTGTTTTCTTTGTTGTTTAACCTTGGCAAAGTT
1 TAGTTTAAATAATGCTTTATTGTTTTCTTTGTTGTTTAACCTTGGCAAAGTT
127101987 TAGTTTAAATAATGCTTTATTGTTTTCTTTGTTGTTTAACCTTGGCAAAGTT
1 TAGTTTAAATAATGCTTTATTGTTTTCTTTGTTGTTTAACCTTGGCAAAGTT
127102039 TA
1 TA
127102041 CATCACTTGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (52 bp):
TAGTTTAAATAATGCTTTATTGTTTTCTTTGTTGTTTAACCTTGGCAAAGTT
Found at i:127105235 original size:245 final size:245
Alignment explanation
Indices: 127104791--127105527 Score: 1332
Period size: 245 Copynumber: 3.0 Consensus size: 245
127104781 CTAAATATAC
* *
127104791 TTGAAATTTCTCCA-TTCAAATTTGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
1 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
127104855 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
66 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
127104920 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
131 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
127104985 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
196 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
*
127105035 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGAGATCTATTCGGTTATTAAATG
1 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
* * *
127105100 ATACATAGTGTGATACAGTCAAAACAAGGTGTTATAGTAAGAAAAGAATAGATACGTCAGAGACA
66 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
127105165 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
131 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
127105230 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
196 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
* * *
127105280 TTCAAATTCCTCCATTTCAAATTCGATTTGAACCAAATATAGGGGATTTATTCGGTTATTAAATG
1 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
* * *
127105345 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAAAAGATACCTCGGAGACG
66 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
* *
127105410 GGCGGATTCATCAACGGATTCTCTATCCCATCATTTGCCATCTAATTGATTTATGTTCGTTATAG
131 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
*
127105475 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATTG
196 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
127105525 TTG
1 TTG
127105528 TCTGCCTTGT
Statistics
Matches: 472, Mismatches: 20, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
244 13 0.03
245 459 0.97
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (245 bp):
TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
Found at i:127109117 original size:6 final size:6
Alignment explanation
Indices: 127109106--127109134 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
127109096 GGTTTAGCTA
127109106 TATATG TATATG TATATG TATATG TATAT
1 TATATG TATATG TATATG TATATG TATAT
127109135 TCTGAGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:127114987 original size:94 final size:94
Alignment explanation
Indices: 127114811--127115006 Score: 293
Period size: 94 Copynumber: 2.1 Consensus size: 94
127114801 GATCCAATTT
* *
127114811 AATTCTTGGGAGGTGAGTAGAGGTGTTCATGGGACAGGCAGGGCTCAACTAAAAAATCATGCCCA
1 AATT-TTGGAAGGTGAGTAGAGGTGTTCATGGGACAGGCAGGGCTCAACTAAAAAATCATGCCAA
* *
127114876 TTTATTAGACCCGAGCCTAGCTGGGCCTAA
65 TTTATTAGACCCAAGCCTAGCCGGGCCTAA
* * * *
127114906 AATTTTGGAAGGTGAGTAGAGGTGTTCATGGGCCGGGCCGGGCTCAACTAAAAAATCATGTCAAT
1 AATTTTGGAAGGTGAGTAGAGGTGTTCATGGGACAGGCAGGGCTCAACTAAAAAATCATGCCAAT
* *
127114971 TTATTGGATCCAAGCCTAGCCGGGCCTAA
66 TTATTAGACCCAAGCCTAGCCGGGCCTAA
127115000 AATTTTG
1 AATTTTG
127115007 CCTAAACCCG
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
94 87 0.96
95 4 0.04
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (94 bp):
AATTTTGGAAGGTGAGTAGAGGTGTTCATGGGACAGGCAGGGCTCAACTAAAAAATCATGCCAAT
TTATTAGACCCAAGCCTAGCCGGGCCTAA
Found at i:127115084 original size:11 final size:11
Alignment explanation
Indices: 127115063--127115092 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
127115053 GCTTGCATTA
127115063 ATTTCTTATATT
1 ATTT-TTATATT
127115075 ATTTTTATATT
1 ATTTTTATATT
127115086 ATTTTTA
1 ATTTTTA
127115093 AATATATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTTTTATATT
Found at i:127123574 original size:6 final size:6
Alignment explanation
Indices: 127123563--127123588 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
127123553 GGCGGAAATG
127123563 GTGGTT GTGGTT GTGGTT GTGGTT GT
1 GTGGTT GTGGTT GTGGTT GTGGTT GT
127123589 TGAGAGAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (6 bp):
GTGGTT
Found at i:127123983 original size:14 final size:14
Alignment explanation
Indices: 127123964--127123991 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
127123954 GATCGAGAGT
127123964 TAAATTTTTGCTTC
1 TAAATTTTTGCTTC
127123978 TAAATTTTTGCTTC
1 TAAATTTTTGCTTC
127123992 AAGTATGGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (14 bp):
TAAATTTTTGCTTC
Found at i:127126943 original size:5 final size:5
Alignment explanation
Indices: 127126933--127126960 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
127126923 TTGTGTGTTC
127126933 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
127126961 TCACAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:127131388 original size:5 final size:5
Alignment explanation
Indices: 127131378--127131414 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
127131368 TTGTGTGTTC
127131378 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
127131415 TCACAATCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:127131770 original size:21 final size:21
Alignment explanation
Indices: 127131727--127131770 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
127131717 TACACTATAT
* ** *
127131727 TTTATATTTTTTTACTTAGAG
1 TTTAAATTTTTTTACAAAAAG
127131748 TTTAAATTTTTTTACAAAAAG
1 TTTAAATTTTTTTACAAAAAG
127131769 TT
1 TT
127131771 AACATGTGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (21 bp):
TTTAAATTTTTTTACAAAAAG
Found at i:127132188 original size:14 final size:14
Alignment explanation
Indices: 127132169--127132197 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
127132159 GTATAGTAAA
127132169 ATATTTTAAAAAAT
1 ATATTTTAAAAAAT
127132183 ATATTTTAAAAAAT
1 ATATTTTAAAAAAT
127132197 A
1 A
127132198 GATATCAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATTTTAAAAAAT
Found at i:127132364 original size:20 final size:20
Alignment explanation
Indices: 127132339--127132379 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
127132329 ATTGAAATAA
127132339 TGGAAAATTATTTTAAAAAT
1 TGGAAAATTATTTTAAAAAT
*
127132359 TGGAAAGTTATTTTAAAAAT
1 TGGAAAATTATTTTAAAAAT
127132379 T
1 T
127132380 AGAATTGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.41
Consensus pattern (20 bp):
TGGAAAATTATTTTAAAAAT
Found at i:127132612 original size:2 final size:2
Alignment explanation
Indices: 127132605--127132648 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
127132595 TTTTCTTTTC
127132605 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
127132647 AT
1 AT
127132649 GGAATGATAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:127145570 original size:33 final size:33
Alignment explanation
Indices: 127145533--127145599 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
127145523 TAATTTTATC
127145533 TATTTTGGTCACCCATTTGTCTTGGATTTTTTT
1 TATTTTGGTCACCCATTTGTCTTGGATTTTTTT
127145566 TATTTTGGTCACCCATTTGTCTTGGATTTTTTT
1 TATTTTGGTCACCCATTTGTCTTGGATTTTTTT
127145599 T
1 T
127145600 TACTTTAGCC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.12, C:0.15, G:0.15, T:0.58
Consensus pattern (33 bp):
TATTTTGGTCACCCATTTGTCTTGGATTTTTTT
Found at i:127155660 original size:31 final size:31
Alignment explanation
Indices: 127155625--127155685 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
127155615 CAATTTAGTA
127155625 ACTTAAATAAAAACTTATAAATAACTTAATG
1 ACTTAAATAAAAACTTATAAATAACTTAATG
* *
127155656 ACTTAAATAAAAACTTTTAAATAATTTAAT
1 ACTTAAATAAAAACTTATAAATAACTTAAT
127155686 AATTATTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (31 bp):
ACTTAAATAAAAACTTATAAATAACTTAATG
Found at i:127157494 original size:21 final size:21
Alignment explanation
Indices: 127157462--127157514 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
127157452 CCATTCAAGA
**
127157462 TAAATAATATATA-AAACTCTT
1 TAAA-AATATATATAAACAATT
127157483 TAAAAATAATATATAAACAATT
1 TAAAAAT-ATATATAAACAATT
127157505 T-AAAATATAT
1 TAAAAATATAT
127157515 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 7 0.25
21 14 0.50
22 7 0.25
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (21 bp):
TAAAAATATATATAAACAATT
Found at i:127157506 original size:22 final size:23
Alignment explanation
Indices: 127157463--127157509 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
127157453 CATTCAAGAT
**
127157463 AAATAATATATAAAACTCTTTAA
1 AAATAATATATAAAACAATTTAA
127157486 AAATAATATAT-AAACAATTTAA
1 AAATAATATATAAAACAATTTAA
127157508 AA
1 AA
127157510 TATATGTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATAATATATAAAACAATTTAA
Found at i:127157761 original size:17 final size:15
Alignment explanation
Indices: 127157721--127157766 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
127157711 ATATAAATAG
* *
127157721 AAATAAAAATATATT
1 AAATAGAAATATAAT
127157736 AAATAGAAATATAAT
1 AAATAGAAATATAAT
127157751 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
127157767 ATAGATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 15 0.56
16 1 0.04
17 11 0.41
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:127157769 original size:44 final size:44
Alignment explanation
Indices: 127157686--127157801 Score: 109
Period size: 44 Copynumber: 2.7 Consensus size: 44
127157676 TATATAAGAA
* *
127157686 AAATAAT-AAT-GA-AAATAATATTAGCATATAAATAGAAATA-A-
1 AAATAATAAATAGATAAATAATAATAG--TAGAAATAGAAATAGAT
*
127157727 AAATATATTAAATAGA-AATATAATAATAGTAGAAATATAAATAGAT
1 AAATA-A-TAAATAGATAA-ATAATAATAGTAGAAATAGAAATAGAT
*
127157773 AAATAATAATTAGATAAATAATAATAGTA
1 AAATAATAAATAGATAAATAATAATAGTA
127157802 TTAGAATAAC
Statistics
Matches: 63, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
41 5 0.08
42 1 0.02
43 1 0.02
44 34 0.54
45 8 0.13
46 14 0.22
ACGTcount: A:0.62, C:0.01, G:0.08, T:0.29
Consensus pattern (44 bp):
AAATAATAAATAGATAAATAATAATAGTAGAAATAGAAATAGAT
Done.