Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 417 of 433
Found at i:127946117 original size:19 final size:22
Alignment explanation
Indices: 127946093--127946139 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 22
127946083 ATCCTTTTTA
127946093 CTAATTACT-CTTAATT-AAG-
1 CTAATTACTACTTAATTAAAGT
*
127946112 CTAATT-TTACTTAATTAAAGT
1 CTAATTACTACTTAATTAAAGT
127946133 CTAATTA
1 CTAATTA
127946140 ACCACTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 1 0.04
19 13 0.57
20 3 0.13
21 6 0.26
ACGTcount: A:0.38, C:0.13, G:0.04, T:0.45
Consensus pattern (22 bp):
CTAATTACTACTTAATTAAAGT
Found at i:127946748 original size:16 final size:16
Alignment explanation
Indices: 127946727--127946759 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
127946717 CTCAGCTTAA
127946727 TTTCTGGTGATAAATC
1 TTTCTGGTGATAAATC
127946743 TTTCTGGTGATAAATC
1 TTTCTGGTGATAAATC
127946759 T
1 T
127946760 ATCTTTTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.45
Consensus pattern (16 bp):
TTTCTGGTGATAAATC
Found at i:127948987 original size:25 final size:27
Alignment explanation
Indices: 127948950--127949002 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
127948940 TCAAACATGC
127948950 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
127948976 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
127949002 A
1 A
127949003 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:127950619 original size:78 final size:78
Alignment explanation
Indices: 127950486--127950647 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
127950476 CATGAAATTC
*
127950486 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCATGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACA
127950551 TTTACCTAACCTA
66 TTTACCTAACCTA
* *
127950564 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAAGGAACA
1 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACA
127950629 TTTACCTAACCTA
66 TTTACCTAACCTA
127950642 TTATCA
1 TTATCA
127950648 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (78 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCATTATCAAGGAACA
TTTACCTAACCTA
Found at i:127950648 original size:26 final size:26
Alignment explanation
Indices: 127950486--127950647 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
127950476 CATGAAATTC
127950486 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
127950512 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
127950538 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
127950564 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
127950590 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
127950616 TTATCAAGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
127950642 TTATCA
1 TTATCA
127950648 ATTTGTATCA
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.37, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:127954709 original size:21 final size:21
Alignment explanation
Indices: 127954680--127954722 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
127954670 CGAACACTCA
*
127954680 AACAGAAGCTCGTGAGAGCTG
1 AACAAAAGCTCGTGAGAGCTG
*
127954701 AACAAAAGCTCGTGATAGCTG
1 AACAAAAGCTCGTGAGAGCTG
127954722 A
1 A
127954723 TCCGCCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.19, G:0.28, T:0.16
Consensus pattern (21 bp):
AACAAAAGCTCGTGAGAGCTG
Found at i:127957758 original size:27 final size:27
Alignment explanation
Indices: 127957720--127958033 Score: 364
Period size: 27 Copynumber: 11.6 Consensus size: 27
127957710 AAAGTACTCC
127957720 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* * **
127957747 C-AGGTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
* ** * *
127957774 CAATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
**
127957801 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
127957828 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACTGTTTTACCCT
*
127957855 CGATTTACAGAATTACTGTTTTACCCC
1 CGATTTACAGAATTACTGTTTTACCCT
* * * *
127957882 CAATTTACATAATTACCGTTTTACCCC
1 CGATTTACAGAATTACTGTTTTACCCT
*
127957909 CGATTTACATAATTA-TCGTTTTACCCT
1 CGATTTACAGAATTACT-GTTTTACCCT
**
127957936 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
* *
127957963 CGATTTATAGAATTACTGTTTCACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
127957990 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACTGTTTTACCCT
*
127958017 CGATTTACAAAATTACT
1 CGATTTACAGAATTACT
127958034 AAAATACCCT
Statistics
Matches: 247, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 243 0.98
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (27 bp):
CGATTTACAGAATTACTGTTTTACCCT
Found at i:127959372 original size:9 final size:9
Alignment explanation
Indices: 127959360--127959416 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
127959350 TTTGATAAAC
127959360 ATGATATGT
1 ATGATATGT
*
127959369 ATGATATGCAC
1 ATGATATG--T
*
127959380 ATGACATGT
1 ATGATATGT
*
127959389 ATGATATGCAC
1 ATGATATG--T
127959400 ATGATATGT
1 ATGATATGT
127959409 ATGATATG
1 ATGATATG
127959417 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:127959383 original size:20 final size:20
Alignment explanation
Indices: 127959358--127959420 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
127959348 ATTTTGATAA
127959358 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
127959378 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
127959398 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
127959418 ACA
1 ACA
127959421 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:127959530 original size:24 final size:24
Alignment explanation
Indices: 127959474--127959663 Score: 260
Period size: 24 Copynumber: 8.0 Consensus size: 24
127959464 GAGGAAGTGA
127959474 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
127959497 TAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
127959521 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
* *
127959545 AAAAAGGCTTATGCCCCAGTTACC
1 AAAAGGGCTTATGCCCCAGTTATC
*
127959569 AAAAGGGCTTACGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
* *
127959592 TAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATC
* *
127959616 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
*
127959640 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
127959664 ATGATAAAGC
Statistics
Matches: 149, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
23 43 0.29
24 95 0.64
25 11 0.07
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:127959543 original size:47 final size:47
Alignment explanation
Indices: 127959474--127959642 Score: 275
Period size: 47 Copynumber: 3.6 Consensus size: 47
127959464 GAGGAAGTGA
127959474 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* * *
127959521 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTACC
1 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTATC
* *
127959569 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
127959616 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
127959643 AGAGGCTAGG
Statistics
Matches: 111, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 68 0.61
48 43 0.39
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:127959637 original size:95 final size:96
Alignment explanation
Indices: 127959474--127959662 Score: 310
Period size: 95 Copynumber: 2.0 Consensus size: 96
127959464 GAGGAAGTGA
* *
127959474 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
127959539 GTTATCAAAA-AGGCTTATGCC-CCAGTTACC
66 GTTATCAAAAGAGGC-TAGGCCTCCAGTTACC
*
127959569 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCA
1 AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
*
127959634 GTTATTAAAAGAGGCTAGGCCTCCAGTTA
66 GTTATCAAAAGAGGCTAGGCCTCCAGTTA
127959663 TATGATAAAG
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
95 76 0.87
96 11 0.13
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (96 bp):
AAAAGGGCTTACGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTATGCCCCA
GTTATCAAAAGAGGCTAGGCCTCCAGTTACC
Found at i:127959892 original size:31 final size:31
Alignment explanation
Indices: 127959857--127959920 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
127959847 CGTTTACCGT
*
127959857 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
127959888 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
127959919 AA
1 AA
127959921 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:127962722 original size:42 final size:42
Alignment explanation
Indices: 127962661--127962787 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 42
127962651 CTTCGTTTTC
** *
127962661 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACAT-A
*
127962704 T-GATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
* *
127962745 TCAATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAACTATGGTCTTACAC-ATATTCACATA
127962786 TC
1 TC
127962788 TCACTGATGC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
41 10 0.13
42 63 0.84
43 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCACATA
Found at i:127962849 original size:47 final size:46
Alignment explanation
Indices: 127962748--127962869 Score: 163
Period size: 47 Copynumber: 2.6 Consensus size: 46
127962738 TCATATATCA
* * * * * *
127962748 ATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTG
1 ATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACCG
* *
127962794 ATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACCG
1 ATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACACCG
127962841 ATGCCATATCCCAGATATGGTCTTATACG
1 ATGCCATATCCCAGATATGGTCTTATACG
127962870 GAAATCACTT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 26 0.39
47 41 0.61
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (46 bp):
ATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACACCG
Found at i:127962930 original size:31 final size:31
Alignment explanation
Indices: 127962894--127963073 Score: 272
Period size: 31 Copynumber: 5.8 Consensus size: 31
127962884 CTTGTCACTT
*
127962894 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
127962925 ATAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
127962956 GTAGCCGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
127962987 GTAGCCGGAA-CTACCACTTTTCACTGCTCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
*
127963018 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
**
127963049 GTAGCTAAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
127963074 TGTCATTTGT
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 3 0.02
31 129 0.96
32 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:127965635 original size:131 final size:131
Alignment explanation
Indices: 127965402--127965721 Score: 366
Period size: 131 Copynumber: 2.5 Consensus size: 131
127965392 TAATTATCCA
* * * *
127965402 TTTAAAAATTCATCGAAATGAAGGCAATGTTCGATGTTTGGCGATTCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCATCAAAACGAAGGCAATGTTCGATGTTTGGCAACTCGGGAATCGTGCCCTATCG
* * * * *
127965467 TGATGGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTT-GAAATTTCGCTCAT-C
66 TGATGGGTTGCAACTTCCCGTTTATTCAAAACAATCGAATATCCCTTTAG-AATTTCACTCATGC
127965530 TC
130 TC
* * *
127965532 TTTAAAAATTCTTCAAAACGAAGGTAATGTTCGATGTTTGGCAACTCGGGGAATCGTGCCCTGTC
1 TTTAAAAATTCATCAAAACGAAGGCAATGTTCGATGTTTGGCAACTC-GGGAATCGTGCCCTATC
* * * *
127965597 GTGCTGGGTTGCAACTTCTCGTTTATTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
65 GTGATGGGTTGCAACTTCCCGTTTATTCAAAACAATCGAATATCCCTTTAGAATTTCACTCATGC
127965662 TC
130 TC
* * * * * *
127965664 TTT--AAATTC-T-AAAATG-AGGCAACGCTCGATGTTTAGAAATTCGAGGAATCGTGCCCTA
1 TTTAAAAATTCATCAAAACGAAGGCAATGTTCGATGTTTGGCAACTCG-GGAATCGTGCCCTA
127965722 CTGTGCTAGG
Statistics
Matches: 162, Mismatches: 24, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
126 1 0.01
127 33 0.20
128 5 0.03
129 1 0.01
130 47 0.29
131 69 0.43
132 6 0.04
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (131 bp):
TTTAAAAATTCATCAAAACGAAGGCAATGTTCGATGTTTGGCAACTCGGGAATCGTGCCCTATCG
TGATGGGTTGCAACTTCCCGTTTATTCAAAACAATCGAATATCCCTTTAGAATTTCACTCATGCT
C
Found at i:127972757 original size:2 final size:2
Alignment explanation
Indices: 127972750--127972775 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
127972740 TTTTCCCTAG
127972750 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
127972776 GACATATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:127973052 original size:571 final size:567
Alignment explanation
Indices: 127971438--127973143 Score: 3283
Period size: 565 Copynumber: 3.0 Consensus size: 567
127971428 ACTTGCTTAG
*
127971438 TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTATCCACCAGCATCCTCCATTTCCAAATCC
1 TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTTTCCACCAGCATCCTCCATTTCCAAATCC
127971503 TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
66 TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
* *
127971568 TACTAGCAGCTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAGTATATATATATATA
131 TCCTAGCAGTTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAGTATATATATATATA
*
127971633 TATATATAGACATATTTTATTAAATCTTTATATGGGTGCCTAGTCA-GGGGCTGGCAAGGCCTAC
196 TATATATAGACATATTTTATTAAATCTTTATACGGGTGCCTAGTCAGGGGGCTGGCAAGGCCTAC
*
127971697 CCCTAAAATAAAAAATTTTCATTTAATGCCTTTAAATTTTTTAAAATTTTAAATTAGTAAAAATA
261 CCCTAAAATAAAAAATTTTCATTTAATGCTTTTAAATTTTTTAAAATTTTAAATTAGTAAAAATA
*
127971762 AAATTGTACTTGGCCCCATTAAAAGTAATAAAAATTTGATTTAATCCTTTAAGCATTATAAAGAT
326 AAATTGTACTTGGCCCCATTAAAATTAATAAAAATTTGATTTAATCCTTTAAGCATTATAAAGAT
127971827 ATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTATTAA
391 ATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTATTAA
*
127971892 ACTCGAAACGAAAATTAGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACAAGGG
456 ACTCGAAACGAAAATTGGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACAAGGG
127971957 TGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
521 TGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
127972004 TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTTTCCACCAGCATCCTCCATTTCCAAATCC
1 TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTTTCCACCAGCATCCTCCATTTCCAAATCC
127972069 TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
66 TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
127972134 TCCTAGCAGTTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAG--TATATATATATA
131 TCCTAGCAGTTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAGTATATATATATATA
127972197 TATATATAGACATATTTTATTAAATCTTTATACGGGTGCCTAGTCAGGGGGCTGGCAAGGCCTAC
196 TATATATAGACATATTTTATTAAATCTTTATACGGGTGCCTAGTCAGGGGGCTGGCAAGGCCTAC
127972262 CCCTAAAATAAAAAATTTTCATTTAATGCTTTTAAATTTTTTAAAATTTTAAATTAGTAAAAATA
261 CCCTAAAATAAAAAATTTTCATTTAATGCTTTTAAATTTTTTAAAATTTTAAATTAGTAAAAATA
127972327 AAATTGTACTTGGCCCCATTAAAATTAATAAAAATTTGATTTAATCCTTTAAGCATTATAAAGAT
326 AAATTGTACTTGGCCCCATTAAAATTAATAAAAATTTGATTTAATCCTTTAAGCATTATAAAGAT
127972392 ATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTATTAA
391 ATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTATTAA
127972457 ACTCGAAACGAAAATTGGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACAAGGG
456 ACTCGAAACGAAAATTGGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACAAGGG
127972522 TGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
521 TGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
127972569 TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTTTCCACCAGCATCCTCCATTTCCAAATCC
1 TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTTTCCACCAGCATCCTCCATTTCCAAATCC
127972634 TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
66 TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
127972699 TCCTAGCAGTTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAGTATATATATATATA
131 TCCTAGCAGTTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAG----TATATATATA
*
127972764 TATATATATATAGACATATTTTATTAAATCTTTATACGGGTGCCTAGTCAGGGGGCTGCCAAGGC
192 TATATATATATAGACATATTTTATTAAATCTTTATACGGGTGCCTAGTCAGGGGGCTGGCAAGGC
127972829 CTACCCCTAAAATAAAAAATTTTCATTTAATGCTTTTAAATTTTTTAAAATTTTAAATTAGTAAA
257 CTACCCCTAAAATAAAAAATTTTCATTTAATGCTTTTAAATTTTTTAAAATTTTAAATTAGTAAA
127972894 AATAAAATTGTACTTGGCCCCATTAAAATTAATAAAAATTTGATTTAATCCTTTAAGCATTATAA
322 AATAAAATTGTACTTGGCCCCATTAAAATTAATAAAAATTTGATTTAATCCTTTAAGCATTATAA
127972959 AGATATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTA
387 AGATATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTA
127973024 TTAAACTCGAAACGAAAATTGGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACA
452 TTAAACTCGAAACGAAAATTGGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACA
127973089 AGGGTGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
517 AGGGTGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
127973140 TATT
1 TATT
127973144 CGTACTCAAA
Statistics
Matches: 1125, Mismatches: 8, Indels: 9
0.99 0.01 0.01
Matches are distributed among these distances:
564 57 0.05
565 503 0.45
566 178 0.16
571 387 0.34
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.30
Consensus pattern (567 bp):
TATTAGCCGAAAGTGTATCCTTAAAAGGCAACTTCTTTCCACCAGCATCCTCCATTTCCAAATCC
TCCCCATTTCACAACCTTTCAAAACTATTTTTAGCAGCCTTCTCAAGCTCTAAAAGCAATAGAGA
TCCTAGCAGTTCCAAACTAATCGAGAAAGAGAAAAACTTTCTTTTCCCTAGTATATATATATATA
TATATATAGACATATTTTATTAAATCTTTATACGGGTGCCTAGTCAGGGGGCTGGCAAGGCCTAC
CCCTAAAATAAAAAATTTTCATTTAATGCTTTTAAATTTTTTAAAATTTTAAATTAGTAAAAATA
AAATTGTACTTGGCCCCATTAAAATTAATAAAAATTTGATTTAATCCTTTAAGCATTATAAAGAT
ATAGATTGTTCACACAGCCTGACACACGGTCGTGTGGCGTCGACAATCAGTTTTCCAACTATTAA
ACTCGAAACGAAAATTGGGCTATCGGTACCCACCTGATACAGATTCAATGCAAAAGCAACAAGGG
TGAATTCACGTCCCTAAAACGACATTACAATGAGAAATCAGACAACA
Found at i:127973728 original size:37 final size:37
Alignment explanation
Indices: 127973674--127973748 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
127973664 ACCTTAATAC
*
127973674 ATAACTAAAACATTTAACCACTAAACCAAACCAATTT
1 ATAACTAAAACACTTAACCACTAAACCAAACCAATTT
127973711 ATAACTAAAACACTTAACCACTAAACCAAACCAATTT
1 ATAACTAAAACACTTAACCACTAAACCAAACCAATTT
127973748 A
1 A
127973749 CTTATCAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.52, C:0.25, G:0.00, T:0.23
Consensus pattern (37 bp):
ATAACTAAAACACTTAACCACTAAACCAAACCAATTT
Found at i:127984570 original size:21 final size:20
Alignment explanation
Indices: 127984541--127984597 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 20
127984531 TTACTACTAA
127984541 CCTAGAACTCTAAACCCTAAAC
1 CCTA-AACT-TAAACCCTAAAC
* *
127984563 CCTAAACTTCGAACCTTAAAC
1 CCTAAACTT-AAACCCTAAAC
*
127984584 CCTTAACTTTAAAC
1 CCTAAAC-TTAAAC
127984598 TTCAAACCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
20 1 0.03
21 22 0.76
22 6 0.21
ACGTcount: A:0.39, C:0.33, G:0.04, T:0.25
Consensus pattern (20 bp):
CCTAAACTTAAACCCTAAAC
Found at i:127984582 original size:28 final size:28
Alignment explanation
Indices: 127984551--127984605 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
127984541 CCTAGAACTC
*
127984551 TAAACCCTAAACCCTAAACTTCGAACCT
1 TAAACCCTAAACCCTAAACTTCAAACCT
* **
127984579 TAAACCCTTAACTTTAAACTTCAAACC
1 TAAACCCTAAACCCTAAACTTCAAACC
127984606 CAAAACCCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.40, C:0.33, G:0.02, T:0.25
Consensus pattern (28 bp):
TAAACCCTAAACCCTAAACTTCAAACCT
Found at i:127984619 original size:28 final size:28
Alignment explanation
Indices: 127984565--127984620 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
127984555 CCCTAAACCC
* ** **
127984565 TAAACTTCGAACCTTAAACCCTTAACTT
1 TAAACTTCAAACCCAAAACCCCAAACTT
127984593 TAAACTTCAAACCCAAAACCCCAAACTT
1 TAAACTTCAAACCCAAAACCCCAAACTT
127984621 GAACCCTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.41, C:0.32, G:0.02, T:0.25
Consensus pattern (28 bp):
TAAACTTCAAACCCAAAACCCCAAACTT
Found at i:127989018 original size:12 final size:12
Alignment explanation
Indices: 127988985--127989077 Score: 59
Period size: 12 Copynumber: 7.7 Consensus size: 12
127988975 TAACTTCTAT
127988985 TTTATATTTAA-A
1 TTTA-ATTTAATA
*
127988997 TTTGATTTTAATA
1 TTT-AATTTAATA
127989010 TTTAATTTAATA
1 TTTAATTTAATA
**
127989022 TTTAAATTTTTTA
1 TTT-AATTTAATA
*
127989035 -TTATTTTAAT-
1 TTTAATTTAATA
*
127989045 TTGATATTTAAGT-
1 TTTA-ATTTAA-TA
*
127989058 TTTACTTTAATA
1 TTTAATTTAATA
127989070 TTTAATTT
1 TTTAATTT
127989078 GGCGTCTAAA
Statistics
Matches: 62, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
11 8 0.13
12 38 0.61
13 16 0.26
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.62
Consensus pattern (12 bp):
TTTAATTTAATA
Found at i:127989025 original size:19 final size:20
Alignment explanation
Indices: 127988982--127989030 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
127988972 TGGTAACTTC
* *
127988982 TATTTTATATTTAAATTTGA
1 TATTTAATATTTAAATTTAA
127989002 T-TTTAATATTT-AATTTAA
1 TATTTAATATTTAAATTTAA
127989020 TATTTAA-ATTT
1 TATTTAATATTT
127989031 TTTATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
18 11 0.42
19 14 0.54
20 1 0.04
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (20 bp):
TATTTAATATTTAAATTTAA
Found at i:127989070 original size:19 final size:19
Alignment explanation
Indices: 127989038--127989074 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
127989028 TTTTTTATTA
*
127989038 TTTTAATTTGATATTTAAG
1 TTTTAATTTAATATTTAAG
*
127989057 TTTTACTTTAATATTTAA
1 TTTTAATTTAATATTTAA
127989075 TTTGGCGTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTTAATTTAATATTTAAG
Found at i:127990867 original size:26 final size:26
Alignment explanation
Indices: 127990786--127990869 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
127990776 TGATACAAAT
127990786 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
127990812 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
127990838 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
127990864 TGATAA
1 TGATAA
127990870 GAATTACATG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.35, C:0.07, G:0.24, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:127994128 original size:3 final size:3
Alignment explanation
Indices: 127994120--127994167 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
127994110 GTAATAGTAG
*
127994120 CAA CAA CAA CAA TAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
127994168 TTAAAAACGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.67, C:0.31, G:0.00, T:0.02
Consensus pattern (3 bp):
CAA
Found at i:127996591 original size:40 final size:40
Alignment explanation
Indices: 127996520--127996595 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
127996510 AGACACCACG
* * **
127996520 TGGGGACAAAATCAACCCATCTATCTTTACACACCAAATA
1 TGGGGACAAAATCAACCCATCCAACCCTACACACCAAATA
* *
127996560 TGGGGATAAAATCAACCCGTCCAACCCTACACACCA
1 TGGGGACAAAATCAACCCATCCAACCCTACACACCA
127996596 TAGAGTACCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.38, C:0.32, G:0.12, T:0.18
Consensus pattern (40 bp):
TGGGGACAAAATCAACCCATCCAACCCTACACACCAAATA
Found at i:127998078 original size:47 final size:47
Alignment explanation
Indices: 127997969--127998079 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
127997959 CCGGGATAAG
* * *
127997969 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
127998016 CACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTTG-A
1 CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
127998063 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
127998080 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:127998848 original size:4 final size:4
Alignment explanation
Indices: 127998835--127998871 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
127998825 TCAAATTTCC
127998835 CTTT -TTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
127998872 CACGTTTGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.09
4 29 0.91
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
CTTT
Found at i:128009374 original size:40 final size:40
Alignment explanation
Indices: 128009303--128009378 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
128009293 AGACACTACG
* **
128009303 TGGGGACAAAATCAACCCATCTATCTTTACACACCAAATA
1 TGGGGACAAAATCAACCCATCTAACCCTACACACCAAATA
* * *
128009343 TGGGGATAAAATTAACCCGTCTAACCCTACACACCA
1 TGGGGACAAAATCAACCCATCTAACCCTACACACCA
128009379 TAGAGTATCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.38, C:0.29, G:0.12, T:0.21
Consensus pattern (40 bp):
TGGGGACAAAATCAACCCATCTAACCCTACACACCAAATA
Found at i:128016253 original size:25 final size:27
Alignment explanation
Indices: 128016216--128016268 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
128016206 TCAAACATGC
128016216 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
128016242 ATTTTGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
128016268 A
1 A
128016269 AAACTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.40
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:128017785 original size:26 final size:26
Alignment explanation
Indices: 128017754--128017913 Score: 239
Period size: 26 Copynumber: 6.2 Consensus size: 26
128017744 TGAAATGCCC
*
128017754 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
128017780 ATCATGGAACATTTACCTCACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
128017806 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
*
128017832 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
128017858 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
128017884 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
128017910 ATCA
1 ATCA
128017914 ATTTGTACCA
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 117 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:128017833 original size:52 final size:52
Alignment explanation
Indices: 128017754--128017913 Score: 275
Period size: 52 Copynumber: 3.1 Consensus size: 52
128017744 TGAAATGCCC
* * * *
128017754 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTCACCCATT
1 ATCATGGAATATTTACCTAATCTATTATCATGGAACATTTACCTAACCCATT
*
128017806 ATCATGGAATATTTACCTAATCTATTATCATGAAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCTATTATCATGGAACATTTACCTAACCCATT
128017858 ATCATGGAATATTTACCTAATCTATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCTATTATCATGGAACATTTACCTAACCCATT
128017910 ATCA
1 ATCA
128017914 ATTTGTACCA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 102 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCTATTATCATGGAACATTTACCTAACCCATT
Found at i:128020379 original size:7 final size:7
Alignment explanation
Indices: 128020367--128020441 Score: 71
Period size: 7 Copynumber: 10.1 Consensus size: 7
128020357 ACCTTATTTT
128020367 TATATTA
1 TATATTA
128020374 TATATTA
1 TATATTA
*
128020381 TAAAATTA
1 T-ATATTA
*
128020389 TTTTATTA
1 -TATATTA
128020397 TATATTA
1 TATATTA
128020404 TTTCATATTA
1 --T-ATATTA
128020414 T-TATTA
1 TATATTA
*
128020420 TTTATTA
1 TATATTA
128020427 TATATTA
1 TATATTA
128020434 TATATTA
1 TATATTA
128020441 T
1 T
128020442 TTTTCACAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
6 6 0.11
7 33 0.58
8 10 0.18
9 2 0.04
10 6 0.11
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (7 bp):
TATATTA
Found at i:128020402 original size:30 final size:27
Alignment explanation
Indices: 128020367--128020441 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 27
128020357 ACCTTATTTT
128020367 TATATTATATATTATAAAATTATTTTATTA
1 TATATTATATATTAT--AATTA-TTTATTA
*
128020397 TATATTATTTCATATTATTATTATTTATTA
1 TATATTA--T-ATATTATAATTATTTATTA
128020427 TATATTATATATTAT
1 TATATTATATATTAT
128020442 TTTTCACAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
27 7 0.17
28 1 0.02
30 21 0.51
31 4 0.10
32 1 0.02
33 7 0.17
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (27 bp):
TATATTATATATTATAATTATTTATTA
Found at i:128020457 original size:3 final size:3
Alignment explanation
Indices: 128020385--128020442 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
128020375 ATATTATAAA
*
128020385 ATT ATT -TT ATT ATAT ATT ATT -TC A-T ATT ATT ATT ATTT ATT ATAT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT A-TT ATT AT-T
128020430 ATT ATAT ATT ATT
1 ATT AT-T ATT ATT
128020443 TTTCACAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
2 4 0.09
3 30 0.65
4 12 0.26
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:128020822 original size:25 final size:27
Alignment explanation
Indices: 128020768--128020822 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
128020758 ATTAATTACT
* * *
128020768 TATTTTATACTTATATTTATATATATA
1 TATTATATAATTATATTTATATATAAA
128020795 TATTATATAATTAT-TTTAT-TATAAA
1 TATTATATAATTATATTTATATATAAA
128020820 TAT
1 TAT
128020823 AAATTCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.32
26 5 0.20
27 12 0.48
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (27 bp):
TATTATATAATTATATTTATATATAAA
Found at i:128020890 original size:17 final size:17
Alignment explanation
Indices: 128020870--128020926 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
128020860 TTCTAAAACA
*
128020870 ATATATTTTTTATTTTT
1 ATATAATTTTTATTTTT
*
128020887 ATATAATTATTATCCTTTT
1 ATATAATTTTTAT--TTTT
* *
128020906 ATA-AATTTTTGTTATT
1 ATATAATTTTTATTTTT
128020922 ATATA
1 ATATA
128020927 TTATATATTG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 6 0.19
17 12 0.38
18 7 0.22
19 7 0.22
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (17 bp):
ATATAATTTTTATTTTT
Found at i:128024668 original size:15 final size:15
Alignment explanation
Indices: 128024632--128024681 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
128024622 CGATATCCTT
128024632 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
128024646 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
128024662 TTT-CATCAT-AT-CA
1 TTTGCATC-TCATGCA
128024675 TTTGCAT
1 TTTGCAT
128024682 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 10 0.31
16 7 0.22
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:128028838 original size:2 final size:2
Alignment explanation
Indices: 128028831--128028873 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
128028821 TGAAAGTCGA
128028831 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128028873 A
1 A
128028874 AAGTGATGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:128030125 original size:38 final size:38
Alignment explanation
Indices: 128030064--128030221 Score: 194
Period size: 38 Copynumber: 4.1 Consensus size: 38
128030054 ATTTGATGTG
* *
128030064 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
128030104 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* **
128030142 TATCCGGGTTAAATCCTGCAGGCTTCGTGCTGCTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
128030180 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
128030218 TATC
1 TATC
128030222 TAAGTTTAAA
Statistics
Matches: 106, Mismatches: 9, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
37 2 0.02
38 89 0.84
39 7 0.07
40 8 0.08
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:128036762 original size:210 final size:209
Alignment explanation
Indices: 128036392--128037168 Score: 939
Period size: 210 Copynumber: 3.8 Consensus size: 209
128036382 GCAGTATAGC
* * *
128036392 AGATCTCACCTTCAGCTGTTTACGCTGAAGCAGATCCAAGATGACAGATCTTATCTCTCTGTATT
1 AGATCTCACCTTCAGATGATTACGCTGAAGCAGATCCAAGATGACAGGTCTTATCTCTCTGTATT
*
128036457 CAGCAGGGAGCAGATAGAAGATATAGCTGATTTGACTTTCACGTGTTTACGATGAAGCAAATCTA
66 C-GCAGGGAGCAGATAGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTA
* * * *
128036522 AGATGATTTGTCGTCTCTGTATTATCAGAGAACAAACCGAAGTCTGGCATTTCCACTTTGATGGA
130 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTAATGGA
* *
128036587 -AGGCAGACACATAGA
195 GA-GCAGATACACAGA
* *
128036602 AAATCTCACCTTCAGATGTTTACGCTGAAGCAGATCCAAGATGACAGGTCTTATCTCTCTGTATT
1 AGATCTCACCTTCAGATGATTACGCTGAAGCAGATCCAAGATGACAGGTCTTATCTCTCTGTATT
*
128036667 CGGCAGGGAGCAGATTGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTA
66 C-GCAGGGAGCAGATAGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTA
*
128036732 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCAATGGA
130 AGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTAATGGA
*
128036797 GAGCAGATACACAGT
195 GAGCAGATACACAGA
* * * **
128036812 AGATCTGACCTTCAGACGATTA-GACAGAAGCAAGATCCAAGATGATTTGG-C--ATC-CT-TGT
1 AGATCTCACCTTCAGATGATTACG-CTGAAGC-AGATCCAAGATGA-CAGGTCTTATCTCTCTGT
* * * * * * * *
128036871 ACTT-ACAAGGAACAAATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGATAAAGCAAAT
63 A-TTCGCAGGGAGCAGATAGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAAT
* *
128036935 CTAAGATGATTTGTCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCTACTTTAAT
127 CTAAGATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTAAT
* *
128037000 GGAGAGTAGATACACAGC
192 GGAGAGCAGATACACAGA
* **
128037018 AGATCTCACCTTCAGATGATTATGCTGAAGCAGATCCAAGATGATTTGG-C--AT-TCT-TGTAC
1 AGATCTCACCTTCAGATGATTACGCTGAAGCAGATCCAAGATGA-CAGGTCTTATCTCTCTGTA-
** * ** * *
128037078 TT---A-TAAG--GA-ACAA-ATCATAGCTGATTTGGCTTTCGTGTGCTTACGATGAAGCAAGTC
64 TTCGCAGGGAGCAGATAGAAGAT-ATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
128037135 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAA
128 TAAGATGATTTGTCGTCTCTGTATTGTCAGAGAA
128037169 TGAATCAAAG
Statistics
Matches: 508, Mismatches: 51, Indels: 27
0.87 0.09 0.05
Matches are distributed among these distances:
198 1 0.00
199 70 0.14
200 1 0.00
202 1 0.00
203 1 0.00
205 30 0.06
206 156 0.31
207 5 0.01
208 4 0.01
209 4 0.01
210 218 0.43
211 15 0.03
212 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (209 bp):
AGATCTCACCTTCAGATGATTACGCTGAAGCAGATCCAAGATGACAGGTCTTATCTCTCTGTATT
CGCAGGGAGCAGATAGAAGATATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAA
GATGATTTGTCGTCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTAATGGAG
AGCAGATACACAGA
Found at i:128038841 original size:30 final size:28
Alignment explanation
Indices: 128038806--128038873 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 28
128038796 ACCTTATTTT
128038806 TATATTAT-ATATTATAAAATTATTTTATTA
1 TATATTATCATATTAT--AATTA-TTTATTA
*
128038836 TATATTATTTCATATTATTATTATTTATTA
1 TATATTA--TCATATTATAATTATTTATTA
128038866 TATATTAT
1 TATATTAT
128038874 TTTTCACAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
28 1 0.03
30 21 0.62
31 4 0.12
32 1 0.03
33 7 0.21
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (28 bp):
TATATTATCATATTATAATTATTTATTA
Found at i:128038850 original size:10 final size:10
Alignment explanation
Indices: 128038830--128038874 Score: 58
Period size: 10 Copynumber: 4.5 Consensus size: 10
128038820 TAAAATTATT
128038830 TTATTATATA
1 TTATTATATA
128038840 TTATT-TCATA
1 TTATTAT-ATA
128038850 TTATTAT-TA
1 TTATTATATA
128038859 TTTATTATATA
1 -TTATTATATA
128038870 TTATT
1 TTATT
128038875 TTTCACAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
9 3 0.10
10 25 0.81
11 3 0.10
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATTATATA
Found at i:128038874 original size:23 final size:23
Alignment explanation
Indices: 128038800--128038874 Score: 75
Period size: 23 Copynumber: 3.3 Consensus size: 23
128038790 TTTTTAACCT
*
128038800 TATTTTTA-TATTATATATTATAA
1 TATTATTATTATTATATATTAT-A
* *
128038823 AATTATT-TTATTATATATTATT
1 TATTATTATTATTATATATTATA
*
128038845 TCA-TATTATTATTATTTATTATA
1 T-ATTATTATTATTATATATTATA
128038868 TATTATT
1 TATTATT
128038875 TTTCACAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 5 0.12
23 37 0.88
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (23 bp):
TATTATTATTATTATATATTATA
Found at i:128044572 original size:26 final size:26
Alignment explanation
Indices: 128044536--128044643 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
128044526 TGAAATTCTC
*
128044536 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
128044562 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
128044588 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
128044614 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
128044640 ATCA
1 ATCA
128044644 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:128051584 original size:26 final size:26
Alignment explanation
Indices: 128051546--128051653 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
128051536 CATGAAATTC
*
128051546 TATCAT-GAACATTTACCTAAACCAT
1 TATCATGGAACATTTACCTAACCCAT
128051571 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
128051597 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
128051623 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
128051649 TATCA
1 TATCA
128051654 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 6 0.08
26 71 0.92
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:128058578 original size:24 final size:26
Alignment explanation
Indices: 128058546--128058651 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
128058536 CATGAAATTC
128058546 TATCAT-GAACATTTACCTAA-CCAT
1 TATCATGGAACATTTACCTAACCCAT
128058570 TATCAT-GAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
* *
128058595 TATCATGGAATATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAACCCAT
128058621 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAACCCAT
128058647 TATCA
1 TATCA
128058652 ATTTGTATCA
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 20 0.26
25 10 0.13
26 46 0.61
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAACCCAT
Found at i:128062540 original size:24 final size:26
Alignment explanation
Indices: 128062504--128062552 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
128062494 TCAAACATGC
128062504 ATTTAGGTCAATTTAAC-CCTAGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGT
* *
128062529 ATTTCGGT-AATTTATCTCCTAGGG
1 ATTTAGGTCAATTTAACTCCTAGGG
128062553 GTAAAACTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACTCCTAGGGT
Found at i:128064062 original size:26 final size:26
Alignment explanation
Indices: 128064026--128064135 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
128064016 CATGAAATTC
128064026 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
128064052 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
128064078 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
128064104 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
128064130 TTATCA
1 TTATCA
128064136 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:128065670 original size:14 final size:15
Alignment explanation
Indices: 128065646--128065678 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
128065636 ATTATCAACA
*
128065646 CAAAGTAGTTTAATT
1 CAAAGTAGTTTAATC
128065661 CAAA-TAGTTTAATC
1 CAAAGTAGTTTAATC
128065675 CAAA
1 CAAA
128065679 CATTTTGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.33
Consensus pattern (15 bp):
CAAAGTAGTTTAATC
Found at i:128066635 original size:24 final size:24
Alignment explanation
Indices: 128066590--128066636 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
128066580 AGTATGGTAT
*
128066590 TGGAAATATATACATGGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
128066614 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
128066637 GTTAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:128066673 original size:2 final size:2
Alignment explanation
Indices: 128066666--128066690 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
128066656 TATAGAGTTA
128066666 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
128066691 AGATCAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:128067349 original size:3 final size:3
Alignment explanation
Indices: 128067343--128067396 Score: 99
Period size: 3 Copynumber: 18.0 Consensus size: 3
128067333 ACATAAGCTC
128067343 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
128067391 CTA ATA
1 ATA ATA
128067397 TTATAAAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:128069305 original size:60 final size:59
Alignment explanation
Indices: 128069159--128069331 Score: 248
Period size: 60 Copynumber: 3.0 Consensus size: 59
128069149 TAAAAGCAGA
* * *
128069159 TTTTGAAAAACAGAAATTAGAGGGCTCAACTCACCTCTTGCAATATGAGTTGA-----T
1 TTTTGAAAAACATAAATTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* *
128069213 TTTTGAAAAACATGAATTTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 TTTTGAAAAACAT-AAATTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
128069273 TTTTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 TTTTGAAAAACATAAATT-AAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
128069332 GAAAGGTAGA
Statistics
Matches: 105, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
54 12 0.11
55 36 0.34
59 4 0.04
60 53 0.50
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (59 bp):
TTTTGAAAAACATAAATTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
Found at i:128069522 original size:13 final size:13
Alignment explanation
Indices: 128069504--128069533 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
128069494 TGATTTTTGA
128069504 AAAACAGAAACTG
1 AAAACAGAAACTG
*
128069517 AAAACAGAAATTG
1 AAAACAGAAACTG
128069530 AAAA
1 AAAA
128069534 TATCTCAGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.10, G:0.13, T:0.10
Consensus pattern (13 bp):
AAAACAGAAACTG
Found at i:128069575 original size:86 final size:84
Alignment explanation
Indices: 128069296--128069605 Score: 281
Period size: 86 Copynumber: 3.7 Consensus size: 84
128069286 AAATTGAAAG
*** *
128069296 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGGTAGAAATTGAAAAAACAAAAATT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG--AAAACAGAAATT
* *
128069361 GAAATTACCTCAGCGTGTCCTGA
64 GAAAATA-CTCAGCGTG-CCAGA
* *** * * * **
128069384 GGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGAAACTTG-ATTTGAAAAGTAGATTTT
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC-AGAAATTGAAAA-CAGAAATT
** ** *
128069448 GAAAA-A--CAGAAAT-TAAAA
64 GAAAATACTCAG-CGTGCCAGA
* *
128069466 GGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAACTGAAAACAGAAATTGA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAACAGAAATTGA
*
128069531 AAATATCTCAGCGTGCCCCGA
66 AAATA-CTCAGCGTG-CCAGA
*
128069552 GGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGAAATT-AAAA
1 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAA
128069606 GGCTCAACTC
Statistics
Matches: 172, Mismatches: 40, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
81 11 0.06
82 47 0.27
83 3 0.02
84 2 0.01
85 7 0.04
86 53 0.31
87 8 0.05
88 40 0.23
89 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (84 bp):
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAACAGAAATTGA
AAATACTCAGCGTGCCAGA
Found at i:128069576 original size:168 final size:170
Alignment explanation
Indices: 128069273--128069587 Score: 481
Period size: 168 Copynumber: 1.9 Consensus size: 170
128069263 TTGATTTTTT
* * * **
128069273 TTTTGAAAAACATAAATTGAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAGG
1 TTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAA
* * * * * *
128069338 TAGAAATTGAAAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTCGC
66 CAGAAACTG-AAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGC
*
128069403 AATATGAGTTGATTTTTTTGAAACTTGATTTGAAAAGTAGA
130 AATATGAATTGATTTTTTTGAAACTTGATTTGAAAAGTAGA
128069444 TTTTGAAAAACAGAAATT-AAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAA
1 TTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAA
* *
128069508 CAGAAACTG-AAAACAGAAATTGAAAATATCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
66 CAGAAACTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
128069572 ATATGAATTGATTTTT
131 ATATGAATTGATTTTT
128069588 GAAAAACAGA
Statistics
Matches: 130, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
168 64 0.49
170 49 0.38
171 17 0.13
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (170 bp):
TTTTGAAAAACAGAAATTGAAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAA
CAGAAACTGAAAAACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCA
ATATGAATTGATTTTTTTGAAACTTGATTTGAAAAGTAGA
Found at i:128069614 original size:54 final size:54
Alignment explanation
Indices: 128069551--128069715 Score: 278
Period size: 54 Copynumber: 3.0 Consensus size: 54
128069541 GCGTGCCCCG
*
128069551 AGGCTCAACTCACCTCTCGCAATATGAATTGATTTTTGAAAAACAGAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
128069605 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATG-AATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACA-GAAATTAAA
*
128069659 AGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAGCAGAAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT-AAA
128069715 A
1 A
128069716 ACAGAAATTG
Statistics
Matches: 105, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
54 84 0.80
55 17 0.16
56 4 0.04
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAA
Found at i:128069714 original size:14 final size:14
Alignment explanation
Indices: 128069695--128069728 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
128069685 AGTTGACTTT
*
128069695 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
128069709 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
128069723 TTGAAA
1 TTGAAA
128069729 CTACCTCAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.06, G:0.18, T:0.18
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:128069926 original size:172 final size:173
Alignment explanation
Indices: 128069659--128070034 Score: 542
Period size: 172 Copynumber: 2.2 Consensus size: 173
128069649 ATGAATTAAA
*
128069659 AGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAGCAGAAATTGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAACAGAAATTGAAAAACAGAAAT
*
128069724 TGAAACTACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAA
64 TGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAA
*
128069789 ATATAAATTGGAAAAAAAAGAAATTGAAAATACGTCAACGTGTCCTG
129 ATATAAATT-G-AAAAAAAGAAATTGAAAATACCTCAACGTGTCCTG
* * * *
128069836 AGGCTCAACTCACCTCTCGCACTATGAGTTGA-TTT-AAAAACAGACATT-AAGAACATAAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAAACAGAAATTG
* * * * * *
128069898 AAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTGCAAAAT
66 AAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAAT
* * * *
128069963 ATAAATTGAAAAACATAAATTGAAATTACCTCAGCGTGTCCTG
131 ATAAATTGAAAAAAAGAAATTGAAAATACCTCAACGTGTCCTG
128070006 AGGCTCAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
128070035 CAACTTTTTG
Statistics
Matches: 181, Mismatches: 18, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
170 58 0.32
171 1 0.01
172 77 0.43
173 11 0.06
174 3 0.02
177 31 0.17
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (173 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAAACAGAAATTG
AAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAAT
ATAAATTGAAAAAAAGAAATTGAAAATACCTCAACGTGTCCTG
Found at i:128069980 original size:14 final size:14
Alignment explanation
Indices: 128069958--128069987 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
128069948 TGATTTTTGC
*
128069958 AAAATATAAATTGA
1 AAAACATAAATTGA
128069972 AAAACATAAATTGA
1 AAAACATAAATTGA
128069986 AA
1 AA
128069988 TTACCTCAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (14 bp):
AAAACATAAATTGA
Found at i:128070009 original size:87 final size:87
Alignment explanation
Indices: 128069659--128070034 Score: 508
Period size: 87 Copynumber: 4.3 Consensus size: 87
128069649 ATGAATTAAA
*
128069659 AGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAGCAGAAATTGAAAAACAGAAAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAAACAGAAAT
* * * *
128069724 TGAAACTACCTCAGCATGCCCCG
65 TGAAAATACCTCAGCGTGTCCTG
* * * *
128069747 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAATATAAATTGGAAAAAAAAGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-G-AAAAACAGAAA
* *
128069812 TTGAAAATACGTCAACGTGTCCTG
64 TTGAAAATACCTCAGCGTGTCCTG
* * * *
128069836 AGGCTCAACTCACCTCTCGCACTATGAGTTGA--TTT-AAAAACAGACATT-AAGAACATAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATT
128069897 GAAAATACCTCAGCGTGTCCTG
66 GAAAATACCTCAGCGTGTCCTG
* * * * *
128069919 AGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTGCAAAATATAAATTGAAAAACATAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATT
*
128069984 GAAATTACCTCAGCGTGTCCTG
66 GAAAATACCTCAGCGTGTCCTG
128070006 AGGCTCAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
128070035 CAACTTTTTG
Statistics
Matches: 252, Mismatches: 30, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
83 60 0.24
85 3 0.01
86 19 0.08
87 80 0.32
88 32 0.13
89 58 0.23
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (87 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAAACAGAAATT
GAAAATACCTCAGCGTGTCCTG
Found at i:128082367 original size:24 final size:24
Alignment explanation
Indices: 128082322--128082368 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
128082312 AGTATGGTAT
*
128082322 TGGAAATATATACATGGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
128082346 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
128082369 GTTAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:128082407 original size:2 final size:2
Alignment explanation
Indices: 128082400--128082442 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
128082390 TAGAGTTAAA
128082400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128082442 A
1 A
128082443 AGATCAAATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:128083105 original size:3 final size:3
Alignment explanation
Indices: 128083099--128083155 Score: 96
Period size: 3 Copynumber: 19.0 Consensus size: 3
128083089 ACATAAGCTC
*
128083099 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
128083147 ATA CTA ATA
1 ATA ATA ATA
128083156 TTATAAAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:128102883 original size:29 final size:29
Alignment explanation
Indices: 128102850--128102913 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
128102840 CCAAATTAAA
128102850 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
128102879 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
128102908 CACCCC
1 CACCCC
128102914 CACACCCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:128102926 original size:37 final size:37
Alignment explanation
Indices: 128102879--128102953 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
128102869 CTAACTCCAT
128102879 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
*
128102916 CACCCTACTAAACCATCCACTACCTCCATCGCCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
128102953 C
1 C
128102954 TAACTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.55, G:0.01, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:128103337 original size:62 final size:59
Alignment explanation
Indices: 128103266--128103380 Score: 142
Period size: 62 Copynumber: 1.9 Consensus size: 59
128103256 TATTTTGTTG
* *
128103266 TTAAATTAATGAATTTGAGCTTTAT-TCTCATTATTTTTATATTTATTTTTTATTATTTTCTA
1 TTAAATTAATGAATTTGAG--TTATGTCTCA-TATTATTATA-TTATTTATTATTATTTTCTA
* * *
128103328 TTAATTTAATTAATTTGAGTTATGTTTCATATTATTATATTATTTATTATTAT
1 TTAAATTAATGAATTTGAGTTATGTCTCATATTATTATATTATTTATTATTAT
128103381 ATATTTATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
59 13 0.28
60 13 0.28
61 4 0.09
62 17 0.36
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (59 bp):
TTAAATTAATGAATTTGAGTTATGTCTCATATTATTATATTATTTATTATTATTTTCTA
Found at i:128103369 original size:8 final size:8
Alignment explanation
Indices: 128103356--128103391 Score: 51
Period size: 7 Copynumber: 4.9 Consensus size: 8
128103346 GTTATGTTTC
128103356 ATATTATT
1 ATATTATT
128103364 ATATTATT
1 ATATTATT
128103372 -TATTATT
1 ATATTATT
128103379 ATA-TATT
1 ATATTATT
128103386 -TATTAT
1 ATATTAT
128103392 GTAAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
6 2 0.08
7 14 0.54
8 10 0.38
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
ATATTATT
Found at i:128103399 original size:17 final size:14
Alignment explanation
Indices: 128103357--128103416 Score: 68
Period size: 14 Copynumber: 4.1 Consensus size: 14
128103347 TTATGTTTCA
128103357 TATTATTATATTATT
1 TATTATTATA-TATT
128103372 TATTATTATATATT
1 TATTATTATATATT
* *
128103386 TATTATGTAAATATA
1 TATTAT-TATATATT
128103401 TA-TATATATATATT
1 TATTAT-TATATATT
128103415 TA
1 TA
128103417 AGCGAAGTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
14 21 0.54
15 18 0.46
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (14 bp):
TATTATTATATATT
Found at i:128103624 original size:21 final size:21
Alignment explanation
Indices: 128103591--128103641 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
128103581 TATTATCCCC
** *
128103591 CATATTTAATGTTATCGTCAA
1 CATATTTTTTGTTATCATCAA
* *
128103612 CATATTTTTTGTTATTATCAT
1 CATATTTTTTGTTATCATCAA
128103633 CATATTTTT
1 CATATTTTT
128103642 AATATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (21 bp):
CATATTTTTTGTTATCATCAA
Found at i:128105786 original size:47 final size:47
Alignment explanation
Indices: 128105677--128105787 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
128105667 CCGGGATAAG
*
128105677 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
128105724 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
128105771 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
128105788 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:128113040 original size:47 final size:47
Alignment explanation
Indices: 128112931--128113041 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
128112921 CCGGGATAAG
*
128112931 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
128112978 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
128113025 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
128113042 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:128115450 original size:3 final size:3
Alignment explanation
Indices: 128115442--128115599 Score: 110
Period size: 3 Copynumber: 53.0 Consensus size: 3
128115432 AGTATCATGG
* * * **
128115442 TAA TAA TAA AAA TAA TAA TAA TAA -AA TAA TAA AAA TAA AAA T-A TGT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * **
128115488 TAC TAA TAA TAA CAA TAAA TAAA TAA TGG TAA TAA -ATA TATA TAA -AA
1 TAA TAA TAA TAA TAA T-AA T-AA TAA TAA TAA TAA TA-A TA-A TAA TAA
* * *
128115535 TAA TAG TAA CAG TAA TAA -AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
128115582 TAA CAA TAT TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA
128115600 CACTCTCCCC
Statistics
Matches: 120, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
2 9 0.08
3 99 0.82
4 12 0.10
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:128116378 original size:85 final size:87
Alignment explanation
Indices: 128116230--128116532 Score: 368
Period size: 84 Copynumber: 3.5 Consensus size: 87
128116220 TTTTTGTTTA
* * * * * *
128116230 AATCTGCTCCACTACCGCTTAGGGAGATATGATTTGTAATTTTCAGCCCGTTTCCCTATTGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
* * *
128116295 GGGAGATAAGGC-TA-GTCTTT
66 GGGGGTTAAGGCTTACGTCTTC
* * *
128116315 AATCTGCTCCGCTACTGTTTAGGGAGATAAGATCTGTAATTTTTAGCCTGTTACCCTACTGCTTA
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
*
128116380 GGGGGTTAAGGCTTGATGTCTTC
66 GGGGGTTAAGGCTT-ACGTCTTC
* * *
128116403 GATATGCTCCACTACTGTTTAGGGA-AT---ATCTGT-ATTTTCCAGCCTGTTACCCTACTGCTT
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTT-CAGCCTGTTACCCTACTGCTT
128116463 AGGGGGTTAAGGCTTACCGTCTTC
65 AGGGGGTTAAGGCTTA-CGTCTTC
* *
128116487 GATCTGCTCTACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAG
1 AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAG
128116533 TCTGCTTCCT
Statistics
Matches: 188, Mismatches: 20, Indels: 17
0.84 0.09 0.08
Matches are distributed among these distances:
83 6 0.03
84 69 0.37
85 68 0.36
86 1 0.01
87 3 0.02
88 36 0.19
89 5 0.03
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (87 bp):
AATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAGCCTGTTACCCTACTGCTTA
GGGGGTTAAGGCTTACGTCTTC
Found at i:128116715 original size:45 final size:45
Alignment explanation
Indices: 128116620--128116718 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
128116610 GGTGGCTAAA
* * *
128116620 ATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTTTG
1 ATCTGCTTCATAGCCGATACATGAAGATAAGACTCGCAATTTTAG
* *
128116665 ATCTGCTTCATAGCCGATACATGGAGATAAGA-TCTGTAATTTTCAG
1 ATCTGCTTCATAGCCGATACATGAAGATAAGACTC-GCAATTTT-AG
128116711 -TCTGCTTC
1 ATCTGCTTC
128116719 CTTGCTACCT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 2 0.04
45 44 0.94
46 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
ATCTGCTTCATAGCCGATACATGAAGATAAGACTCGCAATTTTAG
Found at i:128118720 original size:40 final size:40
Alignment explanation
Indices: 128118654--128118804 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
128118644 AAATTGAATG
* * *
128118654 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
128118693 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
128118733 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
128118773 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
128118805 ACGTGTTATA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 16 0.17
40 75 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:128126694 original size:40 final size:40
Alignment explanation
Indices: 128126635--128126776 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
128126625 AAATTGAATG
* * *
128126635 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
128126675 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
128126715 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
128126755 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
128126777 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:128126777 original size:40 final size:39
Alignment explanation
Indices: 128126674--128126802 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
128126664 TGCTGGAAAT
* * *
128126674 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
128126714 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
128126754 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
128126794 TATATCCGG
1 TATATCCGG
128126803 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:128129665 original size:19 final size:19
Alignment explanation
Indices: 128129641--128129677 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
128129631 CACAATATTT
128129641 TTTTGTTGTTT-TTTCTTTC
1 TTTTG-TGTTTCTTTCTTTC
128129660 TTTTGTGTTTCTTTCTTT
1 TTTTGTGTTTCTTTCTTT
128129678 TTGGCTGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.78
Consensus pattern (19 bp):
TTTTGTGTTTCTTTCTTTC
Found at i:128134598 original size:2 final size:2
Alignment explanation
Indices: 128134591--128134630 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
128134581 ATAGAAAATA
128134591 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
128134631 GAGGATGATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:128135047 original size:3 final size:3
Alignment explanation
Indices: 128135017--128135159 Score: 98
Period size: 3 Copynumber: 48.0 Consensus size: 3
128135007 AGTACCACGG
* * * * **
128135017 TAA TAG TAA AAA TAA AAA TAA TAA -AA TAA TAA AAA TAA TAA T-A TGT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* **
128135063 TAC TAA TAA TAA TAA TAAA TAAA TAA TGG TAA TAA -ATA TATA TAA -AA
1 TAA TAA TAA TAA TAA T-AA T-AA TAA TAA TAA TAA TA-A TA-A TAA TAA
* * * *
128135110 TAA TAG TAA CAG TAA T-A CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
128135157 TAA
1 TAA
128135160 CACTCTCCCC
Statistics
Matches: 109, Mismatches: 24, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
2 8 0.07
3 89 0.82
4 12 0.11
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:128135548 original size:13 final size:13
Alignment explanation
Indices: 128135530--128135580 Score: 70
Period size: 13 Copynumber: 4.0 Consensus size: 13
128135520 AGTGATGGAG
128135530 TTAGTGGGGTGGT
1 TTAGTGGGGTGGT
*
128135543 TTAGTGGGATGGT
1 TTAGTGGGGTGGT
128135556 TTAGT--GGTCGGT
1 TTAGTGGGGT-GGT
128135568 TTAGTGGGGTGGT
1 TTAGTGGGGTGGT
128135581 ATTTGGGTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
11 2 0.06
12 8 0.24
13 20 0.61
14 3 0.09
ACGTcount: A:0.10, C:0.02, G:0.49, T:0.39
Consensus pattern (13 bp):
TTAGTGGGGTGGT
Found at i:128143557 original size:3 final size:3
Alignment explanation
Indices: 128143549--128143701 Score: 173
Period size: 3 Copynumber: 50.7 Consensus size: 3
128143539 TAATTTTAAC
* * **
128143549 ATT ATT ATTT ATT ATT ATT ATT ACT ATT ATT TTT ATT CCT ATT ATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * *
128143595 ACT ACT ATT -TT CGTT ATT ATT ACT ATT ACT ATT ATT ATT ACT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
128143640 TTT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
128143688 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
128143702 ATTTTCTTTG
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
2 2 0.02
3 120 0.94
4 5 0.04
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:128143928 original size:27 final size:27
Alignment explanation
Indices: 128143874--128143928 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
128143864 TCAAATTATT
* * *
128143874 TATTATTTGTATTATTGTTATAATTAC
1 TATTATTAGTATTATTGTTAAAACTAC
128143901 TATTATTAGTATTA-TGTTTAAAACTAC
1 TATTATTAGTATTATTG-TTAAAACTAC
128143928 T
1 T
128143929 TTACCTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (27 bp):
TATTATTAGTATTATTGTTAAAACTAC
Found at i:128145379 original size:3 final size:3
Alignment explanation
Indices: 128145371--128145412 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
128145361 TTAAATGCTG
128145371 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
128145413 AAAAAATTAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:128156093 original size:3 final size:3
Alignment explanation
Indices: 128156085--128156117 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
128156075 TCAATACATT
*
128156085 GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
128156118 TTCTCTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:128170276 original size:30 final size:31
Alignment explanation
Indices: 128170226--128170285 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
128170216 TACTTTAATT
128170226 TGATCAAATTTAATCTCTATACTTTTTAAAA
1 TGATCAAATTTAATCTCTATACTTTTTAAAA
* *
128170257 TGATCAATTTTAGTC-CTATACTTTTTAAA
1 TGATCAAATTTAATCTCTATACTTTTTAAA
128170286 TTTTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.35, C:0.13, G:0.05, T:0.47
Consensus pattern (31 bp):
TGATCAAATTTAATCTCTATACTTTTTAAAA
Found at i:128173872 original size:2 final size:2
Alignment explanation
Indices: 128173865--128173900 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
128173855 ATAATAATAC
* *
128173865 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
128173901 ATAGAAATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:128174017 original size:16 final size:17
Alignment explanation
Indices: 128173989--128174030 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
128173979 AAAGTAATAA
*
128173989 AAATA-ATACTATATAT
1 AAATATATACTATACAT
128174005 AAATATATA-TATACAT
1 AAATATATACTATACAT
*
128174021 AAAAATATAC
1 AAATATATAC
128174031 ACTAATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
AAATATATACTATACAT
Found at i:128174026 original size:18 final size:17
Alignment explanation
Indices: 128173985--128174039 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 17
128173975 AATTAAAGTA
128173985 ATAAAAATA-ATACTAT
1 ATAAAAATATATACTAT
*
128174001 ATATAAATATATATA-TAC
1 ATA-AAA-ATATATACTAT
*
128174019 ATAAAAATATACACTAAT
1 ATAAAAATATATACT-AT
128174037 ATA
1 ATA
128174040 TAATAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 9 0.29
17 7 0.23
18 12 0.39
19 3 0.10
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAAAAATATATACTAT
Found at i:128174146 original size:12 final size:13
Alignment explanation
Indices: 128174131--128174185 Score: 55
Period size: 12 Copynumber: 4.5 Consensus size: 13
128174121 AATAGGGGTG
128174131 ATAATAATA-ATA
1 ATAATAATACATA
128174143 ATAATAATACA-A
1 ATAATAATACATA
*
128174155 ACAATAATACAT-
1 ATAATAATACATA
*
128174167 AT-ATATATATATA
1 ATAATA-ATACATA
128174180 ATAATA
1 ATAATA
128174186 GTAGTCAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
11 3 0.09
12 26 0.74
13 3 0.09
14 3 0.09
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (13 bp):
ATAATAATACATA
Found at i:128174273 original size:3 final size:3
Alignment explanation
Indices: 128174260--128174334 Score: 50
Period size: 3 Copynumber: 24.3 Consensus size: 3
128174250 GAGGGTATAT
128174260 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
128174304 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA A
128174335 CAAAATAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
2 7 0.12
3 40 0.69
4 9 0.16
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:128174286 original size:18 final size:18
Alignment explanation
Indices: 128174256--128174324 Score: 86
Period size: 18 Copynumber: 3.7 Consensus size: 18
128174246 TGGAGAGGGT
128174256 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
128174274 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
*
128174293 CATGAGAAATAATAATAATA
1 -AT-ATAAATAATAATAATA
128174313 ATATAAATAATA
1 ATATAAATAATA
128174325 GTAAAAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
17 3 0.07
18 20 0.44
19 5 0.11
20 5 0.11
21 12 0.27
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:128174878 original size:30 final size:30
Alignment explanation
Indices: 128174844--128174959 Score: 196
Period size: 30 Copynumber: 3.9 Consensus size: 30
128174834 ATTTGATGGT
*
128174844 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
128174874 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
*
128174904 ATAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
* *
128174934 GTAGGTGCAAGTGGGAAGTAAGGTGG
1 GTAGGTGCAAGTGGGAGGCAAGGTGG
128174960 CTAGGGTTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 81 1.00
ACGTcount: A:0.26, C:0.06, G:0.51, T:0.17
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
Found at i:128175579 original size:43 final size:42
Alignment explanation
Indices: 128175523--128176404 Score: 273
Period size: 43 Copynumber: 20.6 Consensus size: 42
128175513 CGTCTTCGAT
* *
128175523 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTTAATTTAGC
1 CTGTTACCCTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* * ** ** * *
128175566 CTGTTACCCTACTGTTTAGGGGTTAAG-GCTTGCCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATC-TGTAAATTTAG-C
* *
128175609 CTGTTTCCCTACCGCTTAGGGGGTTTAAGATCTGTAAATCTTTAGC
1 CTGTTACCCTACTGCTTA-GGGG-TTAAGATCTGTAAA--TTTAGC
* * ** * *
128175655 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATC-TGTAAATTTAG-C
* * *
128175699 CTGTTTCCCTACTGTTTA--GG----G-TCTGTAAATTTAAC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
* ** * *
128175734 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCT-TATCGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTA-AAT-TTAG-C
* * * * ** * *
128175778 CTGTTTCCCCACTGCTTAAGGGTTTAAG-GCT-TATCGTCTTTGAT
1 CTGTTACCCTACTGCTT-AGGGGTTAAGATCTGTA-AAT-TTAG-C
* * *
128175822 CTGTTTCCC-ACTGCTTAAGGGGTTAAGATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTT-AGGGGTTAAGATCTGTAAATTTAGC
* * ** ** **** * *
128175864 CTGTTACCCTACTGCTTAATGGTTTAAGGCCCATTGCCTTCGAT
1 CTGTTACCCTACTGCTT-AGGGGTTAAGATCTGTAAATTTAG-C
* *
128175908 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* ** *** * *
128175951 CTGTTACCCTACTGCTTAGGGGTTAAGGTCCATCGCTTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAG-C
* * *
128175994 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
** ** * * *
128176037 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAAT-TTAG-C
*
128176081 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
** * * **** * *
128176124 CTACTACCCTACTGCTTAGGGGTTAAG-GCTATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAG-C
* * * * * *
128176166 CTGCT-CCACTACTACTTAGGGGGATAAGATCTGTAAGTTCAAC
1 CTGTTACC-CTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* ** * *
128176209 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAAT-TTAG-C
* * * * *
128176253 CTGCT-CCACTACTACTTAGGGAGATAAGATCTG-CAATTTAGT
1 CTGTTACC-CTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* ** * *
128176295 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAAT-TTAG-C
* * * *
128176339 CTGTTTCCCTACTGCATAGGGGGTTAAGAT-TGGAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
128176381 CTGTTACCCTACTGCTTAGGGGTT
1 CTGTTACCCTACTGCTTAGGGGTT
128176405 TAAGGCCCTT
Statistics
Matches: 604, Mismatches: 181, Indels: 110
0.67 0.20 0.12
Matches are distributed among these distances:
35 16 0.03
36 6 0.01
37 4 0.01
41 18 0.03
42 115 0.19
43 195 0.32
44 191 0.32
45 39 0.06
46 17 0.03
47 3 0.00
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
Found at i:128175712 original size:44 final size:44
Alignment explanation
Indices: 128175485--128176703 Score: 368
Period size: 44 Copynumber: 28.3 Consensus size: 44
128175475 CAACTTGGTA
* *** **
128175485 CCCTACTACTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* * * * * *
128175529 CCCTACTGCTTA-GGGTGTTAA-GATCTGTTAATTTAG-CCTGTTA
1 CCCTACTGCTTAGGGGT-TTAAGGCT-TGTCAACTTCGATCTGTTT
* * *
128175572 CCCTACTGTTTAGGGG-TTAAGGCTTGCCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* * * * * *
128175615 CCCTACCGCTTAGGGGGTTTAA-GATCTGTAAATCTT-TAGCCTGTTA
1 CCCTACTGCTTA-GGGGTTTAAGGCT-TGTCAA-CTTCGA-TCTGTTT
*
128175661 CCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* * ** * *
128175705 CCCTACTGTTTA-GGG--T----C-TGT-AAATTTAACCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* ** *
128175740 CCCTACTGCTTAGGGGTTTAAGGCTTATCGTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* * * ** *
128175784 CCCCACTGCTTAAGGGTTTAAGGCTTATCGTCTTTGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* * * * *
128175828 CCC-ACTGCTTAAGGGG-TTAA-GATCTGT-AAATTCAACCTGTTA
1 CCCTACTGCTT-AGGGGTTTAAGGCT-TGTCAACTTCGATCTGTTT
**
128175870 CCCTACTGCTTAATGGTTTAAGGCCCATTG-C--CTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGG--C-TTGTCAACTTCGATCTGTTT
* * * * *
128175914 CCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGA-TCTGTTT
** *
128175957 CCCTACTGCTTAGGGG-TTAAGG-TCCATC-GCTTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCT-TGTCAAC-TTCGATCTGTTT
* * * * * *
128176000 CCCTACTGCTTAGGGGGTTAA-GATCTGT-AAATTCAACCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGTTT
*** *
128176043 CCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* * * * * * ** *
128176087 CCCTACTGCTTAGGGGGTTAA-GATCTGTAAATTTAG-CCTACTA
1 CCCTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGTTT
* ** *
128176130 CCCTACTGCTTAGGGG-TTAAGGC-TATCGCCTTCGATCTG-CT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
* ** * * * * *
128176171 CCACTACTACTTAGGGGGATAA-GATCTGT-AAGTTCAACCTGTTA
1 CC-CTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGTTT
* * ** *
128176215 CCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CT
1 CCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGTTT
* * * * * *
128176258 CCACTACTACTTAGGGAG-ATAA-GATCTG-CAATTTAG-TCTGTTA
1 CC-CTACTGCTTAGGG-GTTTAAGGCT-TGTCAACTTCGATCTGTTT
* * **
128176301 CCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGTTT
* * * * * * *
128176345 CCCTACTGCATAGGGGGTTAA-GATTG-GAAATTC-AGCCTGTTA
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGA-TCTGTTT
* ** * *
128176387 CCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTTGATCTG-CT
1 CCCTACTGCTTAGGGGTTTAAGG-CTTGTCAACTTCGATCTGTTT
* ** * * *
128176430 CCACTACTGCTTAGGGAG-ATAAGATTTG-CAA-TTTGGTCTGTTA
1 CC-CTACTGCTTAGGG-GTTTAAGGCTTGTCAACTTCGATCTGTTT
* * ** *
128176473 CCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CT
1 CCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGTTT
* * * * *
128176516 CCACTACTGCTTAGGGAG-ATAA-GATCTG-CAA-TTTGGTCTGTTA
1 CC-CTACTGCTTAGGG-GTTTAAGGCT-TGTCAACTTCGATCTGTTT
* * ** *
128176559 CCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CT
1 CCCTACTGCTTAGGGGTTTAAG-GCTTGTCAACTTCGATCTGTTT
*** ** * *
128176602 CCACTACTGCTTAGGGAAATAA-TATCTGT-AA-TTCGGTCTGTTA
1 CC-CTACTGCTTAGGGGTTTAAGGCT-TGTCAACTTCGATCTGTTT
* * *** * *
128176645 CCCTACTACTTAGAGGTTTAAGGCCCATCAACCTCGATTTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
128176689 CCCTACTGCTTAGGG
1 CCCTACTGCTTAGGG
128176704 AGATAAGATC
Statistics
Matches: 820, Mismatches: 259, Indels: 192
0.65 0.20 0.15
Matches are distributed among these distances:
35 20 0.02
36 6 0.01
37 1 0.00
38 1 0.00
40 1 0.00
41 14 0.02
42 173 0.21
43 234 0.29
44 320 0.39
45 26 0.03
46 23 0.03
47 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGTTTAAGGCTTGTCAACTTCGATCTGTTT
Found at i:128175764 original size:79 final size:81
Alignment explanation
Indices: 128175639--128175800 Score: 238
Period size: 79 Copynumber: 2.0 Consensus size: 81
128175629 GGGTTTAAGA
* *
128175639 TCTGTAAATCTTTAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTCGATCTGTT
1 TCTGTAAA-CTTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTT
* *
128175704 TCCCTACTG-TTTAGGG
65 TCCCCACTGCTTAAGGG
** *
128175720 TCTGTAAA-TTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCGTCTTTGATCTGTTT
1 TCTGTAAACTTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTTT
128175784 CCCCACTGCTTAAGGG
66 CCCCACTGCTTAAGGG
128175800 T
1 T
128175801 TTAAGGCTTA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
79 58 0.79
80 7 0.10
81 8 0.11
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (81 bp):
TCTGTAAACTTTAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTATCACCTTCGATCTGTTT
CCCCACTGCTTAAGGG
Found at i:128175888 original size:86 final size:87
Alignment explanation
Indices: 128175778--128176723 Score: 946
Period size: 86 Copynumber: 11.0 Consensus size: 87
128175768 CGTCTTTGAT
* * * * *
128175778 CTGTTTCCCCACTGCTTAAGGGTTTAAGGCTTATCGTCTTTGATCTGTTTCCC-ACTGCTTAAGG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
*
128175842 GGTTAAGATCTGTAAATTCAAC
66 GGTTAAGATCTGTAAATTCAGC
* * * *
128175864 CTGTTACCCTACTGCTTAATGGTTTAAGGCCCATTGCCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
128175929 GGTTAAGATCTGTAAATTCAGC
66 GGTTAAGATCTGTAAATTCAGC
*
128175951 CTGTTACCCTACTGCTT-AGGGGTTAAGGTCC-ATCG-CTTTCGATCTGTTTCCCTACTGCTTAG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGG-CCTATCGTC-TTCGATCTGTTTCCCTACTGCTTAG
*
128176013 GGGGTTAAGATCTGTAAATTCAAC
64 GGGGTTAAGATCTGTAAATTCAGC
* * *
128176037 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
*
128176102 GGTTAAGATCTGTAAATTTAGC
66 GGTTAAGATCTGTAAATTCAGC
** * * * *
128176124 CTACTACCCTACTGCTT-AGGGGTTAAGG-CTATCGCCTTCGATCTG-CTCCACTACTACTTAGG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGGCCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAGG
* * *
128176186 GGGATAAGATCTGTAAGTTCAAC
65 GGGTTAAGATCTGTAAATTCAGC
* * * *
128176209 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CTCCACTACTACTTAG
1 CTGTTACCCTACTGCTTAAGGGTTTAAG-GCCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAG
* * * * *
128176272 GGAGATAAGATCTG-CAATTTAGT
64 GGGGTTAAGATCTGTAAATTCAGC
* * *
128176295 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGTTTCCCTACTGCATAGG
1 CTGTTACCCTACTGCTTAAGGGTTTAAG-GCCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
*
128176359 GGGTTAAGAT-TGGAAATTCAGC
65 GGGTTAAGATCTGTAAATTCAGC
* * *
128176381 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTTGATCTG-CTCCACTACTGCTTAG
1 CTGTTACCCTACTGCTTAAGGGTTTAAGG-CCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAG
* * * * ** *
128176444 GGAGATAAGATTTG-CAATTTGGT
64 GGGGTTAAGATCTGTAAATTCAGC
* * *
128176467 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CTCCACTACTGCTTAG
1 CTGTTACCCTACTGCTTAAGGGTTTAAG-GCCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAG
* * * ** *
128176530 GGAGATAAGATCTG-CAATTTGGT
64 GGGGTTAAGATCTGTAAATTCAGC
* * *
128176553 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CTCCACTACTGCTTAG
1 CTGTTACCCTACTGCTTAAGGGTTTAAG-GCCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAG
*** * * *
128176616 GGAAATAATATCTGT-AATTCGGT
64 GGGGTTAAGATCTGTAAATTCAGC
* * ** * *
128176639 CTGTTACCCTACTACTT-AGAGGTTTAAGGCCCATCAACCTCGATTTGTTTCCCTACTGCTTAGG
1 CTGTTACCCTACTGCTTAAG-GGTTTAAGGCCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
128176703 GAGATAAGATCTGCAAATTCA
65 GGGTTAAGATCTGTAAATTCA
128176724 CTGATTCTAG
Statistics
Matches: 758, Mismatches: 81, Indels: 41
0.86 0.09 0.05
Matches are distributed among these distances:
84 3 0.00
85 68 0.09
86 505 0.67
87 179 0.24
88 3 0.00
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (87 bp):
CTGTTACCCTACTGCTTAAGGGTTTAAGGCCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATTCAGC
Found at i:128176232 original size:258 final size:258
Alignment explanation
Indices: 128175777--128176715 Score: 1137
Period size: 258 Copynumber: 3.6 Consensus size: 258
128175767 TCGTCTTTGA
* * * * ** * *
128175777 TCTGTTTCCCCACTGCTTAAGGGTTTAAGGCTTATCGTCTTTGATCTGTTTCCC-ACTGCTTAAG
1 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
* * * * *
128175841 GGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAATGGTTTAAGGCCCATTGCCTTCG
66 GGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTT-AGGGGTTAAGGCCTATCGCCTTCG
* *
128175906 ATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG
130 ATCTG-CTCCACTACTGCTTAGGGGGATAAGATCTGT-AATTCAGCCTGTTACCCTACTGCTTAG
** * * * * *
128175970 GGG-TTAAGGTCCATCG-CTTTCGATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAAT
193 GGGTTTAAGACCCTTCGTC-TTCGATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG-CAAT
* *
128176032 TCAA
255 TTAG
* * *
128176036 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGG
1 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
* **
128176101 GGGTTAAGATCTGTAAATTTAGCCTACTACCCTACTGCTTAGGGGTTAAGG-CTATCGCCTTCGA
66 GGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCTATCGCCTTCGA
* *
128176165 TCTGCTCCACTACTACTTAGGGGGATAAGATCTGTAAGTTCAACCTGTTACCCTACTGCTTAGGG
131 TCTGCTCCACTACTGCTTAGGGGGATAAGATCTGTAA-TTCAGCCTGTTACCCTACTGCTTAGGG
*
128176230 GTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTAG
195 GTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTAG
* *
128176294 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCATAGG
1 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
128176359 GGGTTAAGAT-TGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCT-TCGTCTTT
66 GGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGG-CCTATCGCCTTC
* * * ** *
128176422 GATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATTTGGTCTGTTACCCTACTGCTTAGG
129 GATCTGCTCCACTACTGCTTAGGGGGATAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTAGG
*
128176487 GGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTGG
194 GGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTAG
* *
128176552 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAG
1 TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGTCTTCGATCTGTTTCC-CTACTGCTTAG
*** * * * * * * *
128176616 GGAAATAATATCTGT-AATTCGGTCTGTTACCCTACTACTTAGAGGTTTAAGGCCCATCAACC-T
65 GGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAG-GGGTTAAGGCCTATC-GCCTT
* * *
128176679 CGATTTGTTTCC-CTACTGCTTAGGGAGATAAGATCTG
128 CGATCTG-CTCCACTACTGCTTAGGGGGATAAGATCTG
128176716 CAAATTCACT
Statistics
Matches: 595, Mismatches: 70, Indels: 31
0.85 0.10 0.04
Matches are distributed among these distances:
257 40 0.07
258 362 0.61
259 145 0.24
260 48 0.08
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (258 bp):
TCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
GGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCTATCGCCTTCGA
TCTGCTCCACTACTGCTTAGGGGGATAAGATCTGTAATTCAGCCTGTTACCCTACTGCTTAGGGG
TTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTTAG
Found at i:128176251 original size:172 final size:171
Alignment explanation
Indices: 128175778--128176723 Score: 1068
Period size: 172 Copynumber: 5.5 Consensus size: 171
128175768 CGTCTTTGAT
* * * * *
128175778 CTGTTTCCCCACTGCTTAAGGGTTTAAGGCTTATCGTCTTTGATCTGTTTCCC-ACTGCTTAAGG
1 CTGTTACCCTACTGCTT-AGGGGTTAAGGC-TATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
** *
128175842 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAATGGTTTAAGGCCCATT-GCCTTCG
64 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCC-TTCGTCTTCG
* * * *
128175906 ATCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
128 ATCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG-AAATTTAGC
*
128175951 CTGTTACCCTACTGCTTAGGGGTTAAGGTCCATCG-CTTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTAAGG-CTATCGTC-TTCGATCTGTTTCCCTACTGCTTAGGG
* *
128176015 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGA
64 GGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGA
* * *
128176080 TCTGTTTCC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
129 TCTG-CTCCACTACTGCTTAGGGAGATAAGATCTG-AAATTTAGC
** * * *
128176124 CTACTACCCTACTGCTTAGGGGTTAAGGCTATCGCCTTCGATCTG-CTCCACTACTACTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGTTAAGGCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAGGGG
* * *
128176188 GATAAGATCTGTAAGTTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGAT
65 GTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGAT
* * *
128176253 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTTAGT
130 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGC
* *
128176295 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTGTTTCCCTACTGCATAGG
1 CTGTTACCCTACTGCTTAGGGG-TTAAG--GCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGG
* * *
128176359 GGGTTAAGAT-TGGAAATTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTTG
63 GGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCG
* * * *
128176423 ATCTGCTCCACTACTGCTTAGGGAGATAAGATTTGCAATTTGGT
128 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGC
* *
128176467 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-TCGTCTTCGATCTG-CTCCACTACTGCTTAG
1 CTGTTACCCTACTGCTTAGGGG-TTAAG--GCTATCGTCTTCGATCTGTTTCC-CTACTGCTTAG
* * * **** *
128176530 GGAGATAAGATCTG-CAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTC
62 GGGGTTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTC
* * * ** *
128176594 GATCTGCTCCACTACTGCTTAGGGAAATAATATCTGTAATTCGGT
127 GATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGC
* * * ** * *
128176639 CTGTTACCCTACTACTTAGAGGTTTAAGGCCCATCAACCTCGATTTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAG-GGGTTAAGG-CTATCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
* * *
128176704 AGATAAGATCTGCAAATTCA
64 GGTTAAGATCTGTAAATTCA
128176724 CTGATTCTAG
Statistics
Matches: 684, Mismatches: 71, Indels: 36
0.86 0.09 0.05
Matches are distributed among these distances:
171 38 0.06
172 444 0.65
173 197 0.29
174 5 0.01
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (171 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGGCTATCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGG
TTAAGATCTGTAAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCTTCGATC
TGCTCCACTACTGCTTAGGGAGATAAGATCTGAAATTTAGC
Found at i:128188525 original size:23 final size:21
Alignment explanation
Indices: 128188473--128188560 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
128188463 CCTTATCAGT
* * *
128188473 ATACGACACATAAAGTGCCTA
1 ATACGACACACAAGGTGCCTG
*
128188494 AAACGACACACAAGGTGCCTG
1 ATACGACACACAAGGTGCCTG
*
128188515 ATACGACACACGAGGTGCCTG
1 ATACGACACACAAGGTGCCTG
* *
128188536 AAATACGACACATAAAGTGCCTG
1 --ATACGACACACAAGGTGCCTG
128188559 AT
1 AT
128188561 CAGTAAAGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
21 38 0.68
23 18 0.32
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (21 bp):
ATACGACACACAAGGTGCCTG
Found at i:128190045 original size:29 final size:28
Alignment explanation
Indices: 128190013--128190067 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
128190003 GCTCGAATGC
128190013 TTTCTGTTCTCTT-TTCTCTATTCTTTTTG
1 TTTCTGTTCT-TTATTCTCT-TTCTTTTTG
* *
128190042 TTTCTTTTCTTTATTCTGTTTCTTTT
1 TTTCTGTTCTTTATTCTCTTTCTTTT
128190068 ATTCACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.73
Consensus pattern (28 bp):
TTTCTGTTCTTTATTCTCTTTCTTTTTG
Found at i:128190050 original size:22 final size:23
Alignment explanation
Indices: 128190012--128190058 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
128190002 TGCTCGAATG
128190012 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
128190035 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
128190057 CT
1 CT
128190059 GTTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:128190070 original size:14 final size:12
Alignment explanation
Indices: 128190022--128190071 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
128190012 CTTTCTGTTC
*
128190022 TCTTTTCTCTAT
1 TCTTTTCTTTAT
*
128190034 TCTTTT-TGT-T
1 TCTTTTCTTTAT
128190044 TCTTTTCTTTAT
1 TCTTTTCTTTAT
128190056 TCTGTTTCTTTTAT
1 TCT-TTTC-TTTAT
128190070 TC
1 TC
128190072 ACTTTAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 7 0.22
11 4 0.12
12 10 0.31
13 4 0.12
14 7 0.22
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.72
Consensus pattern (12 bp):
TCTTTTCTTTAT
Found at i:128190123 original size:15 final size:15
Alignment explanation
Indices: 128190103--128190132 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
128190093 TAATAATAAT
128190103 TTATTTATTTATTTA
1 TTATTTATTTATTTA
*
128190118 TTATTTATTTTTTTA
1 TTATTTATTTATTTA
128190133 CCATCTACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTATTTATTTA
Found at i:128191854 original size:3 final size:3
Alignment explanation
Indices: 128191841--128191923 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
128191831 GAGGGTATAT
128191841 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
128191885 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
128191924 AAAGAATAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:128191865 original size:12 final size:12
Alignment explanation
Indices: 128191841--128191924 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
128191831 GAGGGTATAT
128191841 ATAATAT-AATA
1 ATAATATAAATA
128191852 ATAATATAAATA
1 ATAATATAAATA
128191864 ATAATATATACATGA
1 ATAATATA-A-AT-A
128191879 GA-AATA-ATAATA
1 -ATAATATA-AATA
128191891 ATAATATAAATA
1 ATAATATAAATA
* *
128191903 ATAGTAAAAATA
1 ATAATATAAATA
*
128191915 ATAAAATAAA
1 ATAATATAAA
128191925 AAGAATAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 13
0.77 0.06 0.16
Matches are distributed among these distances:
11 8 0.13
12 38 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:128191885 original size:21 final size:18
Alignment explanation
Indices: 128191846--128191905 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
128191836 TATATATAAT
*
128191846 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
128191864 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
128191885 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
128191903 ATA
1 ATA
128191906 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:128193182 original size:6 final size:6
Alignment explanation
Indices: 128193171--128193210 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
128193161 CTCTCATTTA
128193171 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA
128193211 ATACGAATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:128194944 original size:4 final size:4
Alignment explanation
Indices: 128194935--128194982 Score: 69
Period size: 4 Copynumber: 12.0 Consensus size: 4
128194925 TACATATGTA
* * *
128194935 TATG TATG TATA TATG TATG TATG CATG TATG TGTG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
128194983 GAACTTTGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (4 bp):
TATG
Found at i:128199289 original size:21 final size:21
Alignment explanation
Indices: 128199260--128199320 Score: 97
Period size: 21 Copynumber: 2.9 Consensus size: 21
128199250 TTAAAAACAG
*
128199260 CTGTGGCGGTGAGATTA-ATTA
1 CTGTAGCGGTGAGATTAGA-TA
128199281 CTGTAGCGGTGAGATTAGATA
1 CTGTAGCGGTGAGATTAGATA
128199302 CTGTAGCGGTGAGATTAGA
1 CTGTAGCGGTGAGATTAGA
128199321 AACAATGGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 37 0.97
22 1 0.03
ACGTcount: A:0.26, C:0.10, G:0.34, T:0.30
Consensus pattern (21 bp):
CTGTAGCGGTGAGATTAGATA
Found at i:128200415 original size:14 final size:14
Alignment explanation
Indices: 128200378--128200411 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
128200368 GTTTGCCAGT
128200378 AAAATATTTTCTGG
1 AAAATATTTTCTGG
128200392 AAAATGATTTT-TGG
1 AAAAT-ATTTTCTGG
128200406 AAAATA
1 AAAATA
128200412 ATTTACTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 13 0.68
15 5 0.26
ACGTcount: A:0.44, C:0.03, G:0.15, T:0.38
Consensus pattern (14 bp):
AAAATATTTTCTGG
Found at i:128200427 original size:19 final size:19
Alignment explanation
Indices: 128200405--128200442 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
128200395 ATGATTTTTG
128200405 GAAAATAATTTACTTTTCC
1 GAAAATAATTTACTTTTCC
*
128200424 GAAAATGATTTACTTTTCC
1 GAAAATAATTTACTTTTCC
128200443 AGTGTTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (19 bp):
GAAAATAATTTACTTTTCC
Found at i:128200552 original size:22 final size:22
Alignment explanation
Indices: 128200525--128200566 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
128200515 CTGTATTTAC
128200525 ATATATTAATAAATTTATATAT
1 ATATATTAATAAATTTATATAT
128200547 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
128200567 TTTAAATTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATATTAATAAATTTATATAT
Found at i:128200971 original size:7 final size:7
Alignment explanation
Indices: 128200959--128200984 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
128200949 GTGCCTTAGA
128200959 CATATCC
1 CATATCC
128200966 CATATCC
1 CATATCC
128200973 CATATCC
1 CATATCC
128200980 CATAT
1 CATAT
128200985 GTATGATCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (7 bp):
CATATCC
Found at i:128203098 original size:6 final size:6
Alignment explanation
Indices: 128203089--128203122 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
128203079 AAGAGAATGA
* *
128203089 GAAGGG GAAGGG GAAGGG GAAAGG GAAGAG GAAG
1 GAAGGG GAAGGG GAAGGG GAAGGG GAAGGG GAAG
128203123 AAGCTTCAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (6 bp):
GAAGGG
Done.