Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 424 of 433
Found at i:130120603 original size:29 final size:29
Alignment explanation
Indices: 130120570--130120701 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
130120560 CCTCCGAACT
** * * *
130120570 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
130120599 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
130120628 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
130120657 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
130120686 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
130120702 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 94 1.00
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:130123722 original size:16 final size:15
Alignment explanation
Indices: 130123685--130123735 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
130123675 TTGAAATCTT
*
130123685 TAAAATAAATTATAA
1 TAAAATAAATTATTA
*
130123700 AATAAATAAATGTATTA
1 TA-AAATAAAT-TATTA
*
130123717 TAAAATTAA-TATTA
1 TAAAATAAATTATTA
130123731 TAAAA
1 TAAAA
130123736 ATTATATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 14 0.47
17 5 0.17
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (15 bp):
TAAAATAAATTATTA
Found at i:130134723 original size:44 final size:40
Alignment explanation
Indices: 130134634--130134714 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
130134624 AATCAAATGG
*
130134634 TTTTAGTAAATAGAAAGAAAATATAATTTTTATATATATA
1 TTTTTGTAAATAGAAAGAAAATATAATTTTTATATATATA
130134674 TTTTTGTAAATAGAAAGAAAATATAATTTTTATATATATA
1 TTTTTGTAAATAGAAAGAAAATATAATTTTTATATATATA
130134714 T
1 T
130134715 ATATTTTTGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (40 bp):
TTTTTGTAAATAGAAAGAAAATATAATTTTTATATATATA
Found at i:130143701 original size:20 final size:20
Alignment explanation
Indices: 130143676--130143723 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
130143666 CCCCACAAAA
130143676 TTCAAGATTTAAGAGTT-GAG
1 TTCAAGATTTAAGA-TTCGAG
130143696 TTCAAGATTTAAGATTCGAG
1 TTCAAGATTTAAGATTCGAG
*
130143716 TTGAAGAT
1 TTCAAGAT
130143724 AAAAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (20 bp):
TTCAAGATTTAAGATTCGAG
Found at i:130143983 original size:14 final size:14
Alignment explanation
Indices: 130143964--130143993 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
130143954 AACCCTAAAT
*
130143964 CTTAAATTTCAAAC
1 CTTAAATCTCAAAC
130143978 CTTAAATCTCAAAC
1 CTTAAATCTCAAAC
130143992 CT
1 CT
130143994 CGAATCCCGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (14 bp):
CTTAAATCTCAAAC
Found at i:130151920 original size:3 final size:3
Alignment explanation
Indices: 130151912--130151946 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
130151902 CACATGCCAA
130151912 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
130151947 GATACTGACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:130153467 original size:20 final size:20
Alignment explanation
Indices: 130153442--130153480 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
130153432 AAATTATTTT
130153442 ATTT-AAGAAAAATGAAAAAC
1 ATTTAAAGAAAAA-GAAAAAC
130153462 ATTTAAAAGAAAAAGAAAA
1 ATTT-AAAGAAAAAGAAAA
130153481 CTCACCTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.69, C:0.03, G:0.10, T:0.18
Consensus pattern (20 bp):
ATTTAAAGAAAAAGAAAAAC
Found at i:130154387 original size:29 final size:28
Alignment explanation
Indices: 130154328--130154409 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 28
130154318 AATAATTTAT
* *
130154328 ATTTTTATAATTTTTAAA-TAATTAATTTA
1 ATTTTTATTATTTTTAAATTAA--AATATA
130154357 ATTTTTATTATTTTTAAGATTAAAATATA
1 ATTTTTATTATTTTTAA-ATTAAAATATA
* *
130154386 A-TTTTATTATTATTAATTTAAAAT
1 ATTTTTATTATTTTTAAATTAAAAT
130154410 TTTATAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.15
28 14 0.30
29 22 0.47
30 1 0.02
31 3 0.06
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (28 bp):
ATTTTTATTATTTTTAAATTAAAATATA
Found at i:130154400 original size:22 final size:23
Alignment explanation
Indices: 130154375--130154427 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 23
130154365 TATTTTTAAG
* *
130154375 ATTAAAATATAATTTTAT-TATT
1 ATTAAAATAAAATTTTATAAATT
**
130154397 ATTAATTTAAAATTTTATAAATT
1 ATTAAAATAAAATTTTATAAATT
130154420 A-TAAAATA
1 ATTAAAATA
130154428 CTTAAATAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
ATTAAAATAAAATTTTATAAATT
Found at i:130159130 original size:36 final size:36
Alignment explanation
Indices: 130159075--130159148 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 36
130159065 TTTTACTATT
* * **
130159075 TTGTTATCATTTCGTTATTACATTGCTATTATTTTA
1 TTGTTATCATTTAGATATTACATAACTATTATTTTA
* * *
130159111 TTGTTATTATTTAGATATTATATAACTCTTATTTTA
1 TTGTTATCATTTAGATATTACATAACTATTATTTTA
130159147 TT
1 TT
130159149 ATTAATTTTG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.26, C:0.08, G:0.07, T:0.59
Consensus pattern (36 bp):
TTGTTATCATTTAGATATTACATAACTATTATTTTA
Found at i:130167574 original size:93 final size:93
Alignment explanation
Indices: 130167415--130167586 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
130167405 GCCCATAAGT
* * *
130167415 GAACTCGGACTTAACTCAACGAGCTCAGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
130167480 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
130167508 GAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
130167572 ACGAGTTCGGATGCC
65 ACGAGTTCGGATGCC
130167587 CAAATATCCC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:130167580 original size:46 final size:46
Alignment explanation
Indices: 130167407--130167582 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
130167397 TGTAACCCGC
* * * *
130167407 CCATAAGTGAACTCGGACTTAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCAT
* * *
130167453 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* *
130167503 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
130167546 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
130167583 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 13, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 4 0.04
46 60 0.55
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:130167601 original size:46 final size:46
Alignment explanation
Indices: 130167458--130167601 Score: 136
Period size: 46 Copynumber: 3.1 Consensus size: 46
130167448 CGCATCCATG
* * *
130167458 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TATATCCC
* * *
130167506 A-CGAACTCGGACTCAACTCAACGAGTTCGGA----CATTTGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATAT--ATCC--C
*
130167551 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
130167597 AGTGA
1 AGTGA
130167602 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
41 1 0.01
43 4 0.05
45 1 0.01
46 34 0.44
47 29 0.38
48 5 0.06
50 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATATATCCC
Found at i:130174985 original size:220 final size:219
Alignment explanation
Indices: 130174604--130175022 Score: 644
Period size: 220 Copynumber: 1.9 Consensus size: 219
130174594 ATATGCGAGA
** * *
130174604 ATCTTGGAAAAATTGAACATACTCGTGTTGGTAAATACTTGTATTCCATAATCATGCTTGAGTTT
1 ATCTTGGAAAAATTGAACATACTCGTGTTGGTAAATACACGTATTCCATAATCAAGCATGAGTTT
* *
130174669 GTGATGATAAATGAGAGGTCTTGAAATTTAATCAGTGAATGGATGGATAGTTGATTTGATTTATG
66 GGGATGATAAATGAGAGGTATTGAAATTTAATCAGTGAATGGATGGATAGTTGATTTGATTTATG
* * * *
130174734 TTATGGCTATTAGCTTTTTGGTAATCAGAGAATAGAAGTATTTAG-TGATATTGCTTTATAATCT
131 TCATGGCAATTAGCTTTCTGGTAATCAGAGAATAGAAGTATTT-GCTGATATTGCTTGATAATCT
130174798 AATCTGTCCTATCTGTGTGCAATAC
195 AATCTGTCCTATCTGTGTGCAATAC
* * *
130174823 ATCTTGGAAAAATTGAACATACTCGTGTTGGTCACATACACGTATTCTATACTCAAGCATGAGTT
1 ATCTTGGAAAAATTGAACATACTCGTGTTGGT-AAATACACGTATTCCATAATCAAGCATGAGTT
* *
130174888 TGGGATGATAAATGAGAGAG-ATTGAATTTTAATCAGTGAATGGATGGATAGTTGATTTGATTTG
65 TGGGATGATAAATGAGAG-GTATTGAAATTTAATCAGTGAATGGATGGATAGTTGATTTGATTTA
* *
130174952 TGTCATGGCAATTGGCTTTCTGGTAATCAGAGAATAGAAGTATTTGCTGATGTTGCTTGATAATC
129 TGTCATGGCAATTAGCTTTCTGGTAATCAGAGAATAGAAGTATTTGCTGATATTGCTTGATAATC
130175017 TAATCT
194 TAATCT
130175023 TTGCCAGTTC
Statistics
Matches: 180, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
219 33 0.18
220 146 0.81
221 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (219 bp):
ATCTTGGAAAAATTGAACATACTCGTGTTGGTAAATACACGTATTCCATAATCAAGCATGAGTTT
GGGATGATAAATGAGAGGTATTGAAATTTAATCAGTGAATGGATGGATAGTTGATTTGATTTATG
TCATGGCAATTAGCTTTCTGGTAATCAGAGAATAGAAGTATTTGCTGATATTGCTTGATAATCTA
ATCTGTCCTATCTGTGTGCAATAC
Found at i:130178082 original size:22 final size:21
Alignment explanation
Indices: 130178056--130178114 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 21
130178046 TTTTAAAATA
130178056 TAAATTTTAAATATTATTTTT
1 TAAATTTTAAATATTATTTTT
130178077 TAAAATTTTAAATATTATTTTT
1 T-AAATTTTAAATATTATTTTT
*
130178099 TTAATATTTAAATATT
1 TAAAT-TTTAAATATT
130178115 TTAAACTTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
21 4 0.11
22 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAAATTTTAAATATTATTTTT
Found at i:130178105 original size:36 final size:34
Alignment explanation
Indices: 130178013--130178106 Score: 102
Period size: 36 Copynumber: 2.7 Consensus size: 34
130178003 GAGATATATA
130178013 TTTAAAA-TATTTTATTT-ATATATATTTTTTAAAT
1 TTTAAAATTATTTT-TTTAATAT-TATTTTTTAAAT
** *
130178047 TTTAAAATATAAATTTTAAATATTATTTTTTAAAAT
1 TTTAAAAT-TATTTTTTTAATATTATTTTTT-AAAT
130178083 TTTAAATATTATTTTTTTAATATT
1 TTTAAA-ATTATTTTTTTAATATT
130178107 TAAATATTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
34 7 0.14
35 10 0.20
36 30 0.61
37 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (34 bp):
TTTAAAATTATTTTTTTAATATTATTTTTTAAAT
Found at i:130178421 original size:13 final size:12
Alignment explanation
Indices: 130178396--130178428 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
130178386 ATTTTTTTAA
130178396 TTTTAAA-TATTT
1 TTTTAAATTA-TT
130178408 TTTTAAATTATT
1 TTTTAAATTATT
130178420 TTTTAAATT
1 TTTTAAATT
130178429 TTGAATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 18 0.90
13 2 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTTAAATTATT
Found at i:130178430 original size:21 final size:21
Alignment explanation
Indices: 130178414--130178472 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
130178404 ATTTTTTTAA
130178414 ATTATTTTTTAAATTTTGAAT
1 ATTATTTTTTAAATTTTGAAT
** *
130178435 ATTATTTTTTAAACATTAAAT
1 ATTATTTTTTAAATTTTGAAT
*
130178456 ATATATTTTTAAAATTT
1 AT-TATTTTTTAAATTT
130178473 GTTTTTTTAC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTATTTTTTAAATTTTGAAT
Found at i:130178523 original size:5 final size:5
Alignment explanation
Indices: 130178513--130178573 Score: 56
Period size: 5 Copynumber: 12.0 Consensus size: 5
130178503 TTTCTCTGAC
*
130178513 ATTTT ATTTT ATTTTT TTCTTT ATCTTT A-TTT A-TTT A-TTT ATTTTT
1 ATTTT ATTTT A-TTTT AT-TTT AT-TTT ATTTT ATTTT ATTTT A-TTTT
130178559 ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT
130178574 TTTATTATTA
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
4 12 0.24
5 21 0.42
6 17 0.34
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:130178543 original size:18 final size:17
Alignment explanation
Indices: 130178515--130178579 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 17
130178505 TCTCTGACAT
*
130178515 TTTATTTTATTTTTTTC
1 TTTATTTTATTTTTTTA
*
130178532 TTTATCTTTATTTATTTA
1 TTTAT-TTTATTTTTTTA
130178550 TTTATTTTTATTTTATTTTA
1 TTTA-TTTTA-TTT-TTTTA
130178570 TTT-TTTTATT
1 TTTATTTTATT
130178580 ATTAATTTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
17 7 0.17
18 23 0.56
19 4 0.10
20 7 0.17
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTATTTTATTTTTTTA
Found at i:130178651 original size:22 final size:22
Alignment explanation
Indices: 130178591--130178663 Score: 67
Period size: 22 Copynumber: 3.3 Consensus size: 22
130178581 TTAATTTTAA
* * *
130178591 AAAATTTGAAATGTATA-TTTG
1 AAAATTTTAAATATATATTTTT
*
130178612 AAATGTTTTATAATATATATTTTT
1 AAA-ATTTTA-AATATATATTTTT
*
130178636 AAAATTTTAAATATATATATTT
1 AAAATTTTAAATATATATTTTT
*
130178658 GAAATT
1 AAAATT
130178664 ATTTTTCTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
21 3 0.07
22 21 0.50
23 12 0.29
24 6 0.14
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
AAAATTTTAAATATATATTTTT
Found at i:130178682 original size:20 final size:20
Alignment explanation
Indices: 130178654--130178695 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
130178644 AAATATATAT
130178654 ATTTGAAATTATT-TTTCTAA
1 ATTTGAAA-TATTATTTCTAA
* *
130178674 ATTTTAAATATTATTTTTAA
1 ATTTGAAATATTATTTCTAA
130178694 AT
1 AT
130178696 CATTGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (20 bp):
ATTTGAAATATTATTTCTAA
Found at i:130178725 original size:34 final size:33
Alignment explanation
Indices: 130178630--130178729 Score: 121
Period size: 33 Copynumber: 3.0 Consensus size: 33
130178620 TATAATATAT
* * *
130178630 ATTTTTAAAATTTTAAATATATATATTTGAAATT
1 ATTTTTAAAATTTTAAATAT-TATTTTTTAAATC
*
130178664 ATTTTTCTAAATTTTAAATATTA-TTTTTAAATC
1 ATTTTT-AAAATTTTAAATATTATTTTTTAAATC
*
130178697 ATTGTTTAAAAATTTAAATATTATTTTTTAAAT
1 ATT-TTTAAAATTTTAAATATTATTTTTTAAAT
130178730 ATTAAAAATA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
33 24 0.42
34 20 0.35
35 13 0.23
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (33 bp):
ATTTTTAAAATTTTAAATATTATTTTTTAAATC
Found at i:130178755 original size:20 final size:20
Alignment explanation
Indices: 130178705--130178756 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
130178695 TCATTGTTTA
*
130178705 AAAAT-TTAAATATTATTTTT
1 AAAATATTAAA-AATATTTTT
*
130178725 TAAATATTAAAAATATTTTT
1 AAAATATTAAAAATATTTTT
130178745 AATAATA-TAAAA
1 AA-AATATTAAAA
130178757 CATTTAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAATATTAAAAATATTTTT
Found at i:130178843 original size:24 final size:26
Alignment explanation
Indices: 130178816--130178877 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 26
130178806 TTAGAAAAAT
130178816 AATTTCAAATATATATATATT-T-AA
1 AATTTCAAATATATATATATTATAAA
*
130178840 AATTTTAAA-A-ATATATATTATAAA
1 AATTTCAAATATATATATATTATAAA
130178864 ACATTTCAAATATA
1 A-ATTTCAAATATA
130178878 CATCTCAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 9 0.29
23 2 0.06
24 11 0.35
25 7 0.23
26 1 0.03
27 1 0.03
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTTCAAATATATATATATTATAAA
Found at i:130178925 original size:18 final size:18
Alignment explanation
Indices: 130178892--130178965 Score: 57
Period size: 16 Copynumber: 4.0 Consensus size: 18
130178882 TCAAGTTTTT
130178892 TAAAATTAACAATAAAAAAA
1 TAAAA-TAA-AATAAAAAAA
130178912 TAAAATAAAAT--AAAAA
1 TAAAATAAAATAAAAAAA
130178928 T-AAAT-AAATAAATAAAGA
1 TAAAATAAAATAAA-AAA-A
*
130178946 TAAAGAAAAAAATAAAAAAA
1 T-AA-AATAAAATAAAAAAA
130178966 ATGTCAGAGA
Statistics
Matches: 45, Mismatches: 1, Indels: 16
0.73 0.02 0.26
Matches are distributed among these distances:
14 4 0.09
15 4 0.09
16 7 0.16
17 3 0.07
18 5 0.11
19 3 0.07
20 7 0.16
21 5 0.11
22 7 0.16
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (18 bp):
TAAAATAAAATAAAAAAA
Found at i:130178931 original size:24 final size:24
Alignment explanation
Indices: 130178892--130178967 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
130178882 TCAAGTTTTT
*
130178892 TAAAATTAACAATAAAAAAATAAAA
1 TAAAA-TAAAAATAAAAAAATAAAA
*
130178917 TAAAATAAAAATAAATAAAT-AAA
1 TAAAATAAAAATAAAAAAATAAAA
*
130178940 TAAAGAT--AAAGAAAAAAATAAAA
1 TAAA-ATAAAAATAAAAAAATAAAA
130178963 -AAAAT
1 TAAAAT
130178968 GTCAGAGAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
21 2 0.04
22 13 0.29
23 10 0.22
24 15 0.33
25 5 0.11
ACGTcount: A:0.78, C:0.01, G:0.03, T:0.18
Consensus pattern (24 bp):
TAAAATAAAAATAAAAAAATAAAA
Found at i:130179053 original size:22 final size:22
Alignment explanation
Indices: 130179026--130179080 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
130179016 GAAAGTTTAA
130179026 AATATTT-AAATATTAAAAAAAT
1 AATATTTAAAAT-TTAAAAAAAT
130179048 AATATTTAAAATTTAAAAAAAT
1 AATATTTAAAATTTAAAAAAAT
*
130179070 AAT-TTCAAAAT
1 AATATTTAAAAT
130179081 ATATATTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
21 7 0.23
22 20 0.65
23 4 0.13
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
AATATTTAAAATTTAAAAAAAT
Found at i:130179096 original size:22 final size:23
Alignment explanation
Indices: 130179070--130179151 Score: 78
Period size: 23 Copynumber: 3.4 Consensus size: 23
130179060 TTAAAAAAAT
*
130179070 AATTTCAAAATATATATTT-TAA
1 AATTTTAAAATATATATTTATAA
*
130179092 AATTTAAAAAATATATATATTAATAA
1 AATTT-TAAAATATATAT-TT-ATAA
*
130179118 AATATTTTAAATATATATTTCA-AA
1 AAT-TTTAAAATATATATTT-ATAA
130179142 AATTTTAAAA
1 AATTTTAAAA
130179152 GTAATAATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
22 5 0.10
23 17 0.34
24 7 0.14
25 3 0.06
26 16 0.32
27 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
AATTTTAAAATATATATTTATAA
Found at i:130179137 original size:49 final size:50
Alignment explanation
Indices: 130179077--130179172 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 50
130179067 AATAATTTCA
* *
130179077 AAATATATATTT-TAAAA-TTTAAAA-AATATATATATTAATAAAATATTTT
1 AAATATATATTTCAAAAATTTTAAAAGAATA-ATA-ATAAATAAAATATTTT
130179126 AAATATATATTTCAAAAATTTTAAAAGTAATAATAATAAATAAAATA
1 AAATATATATTTCAAAAATTTTAAAAG-AATAATAATAAATAAAATA
130179173 ATGAGAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
49 12 0.29
50 4 0.10
51 18 0.44
52 3 0.07
53 4 0.10
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (50 bp):
AAATATATATTTCAAAAATTTTAAAAGAATAATAATAAATAAAATATTTT
Found at i:130185305 original size:47 final size:47
Alignment explanation
Indices: 130185236--130185358 Score: 185
Period size: 47 Copynumber: 2.6 Consensus size: 47
130185226 TTCTATTGAT
130185236 CTCATA-ACATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC
1 CTCATATA-ATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC
** * *
130185283 CTCATATAATGTTTTCGTTGTTCGGTTGTAGTCCATGCTTCTGGTAC
1 CTCATATAATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC
*
130185330 CTCATATAATGTTTTCAATGTTCGGTTGT
1 CTCATATAATGTTTTCAATGTTCAGTTGT
130185359 CCTACAAACG
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
47 68 0.99
48 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.43
Consensus pattern (47 bp):
CTCATATAATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC
Found at i:130188283 original size:19 final size:19
Alignment explanation
Indices: 130188256--130188295 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
130188246 ACCTTTACCA
130188256 TTTTAATTAAATTCGTTTT
1 TTTTAATTAAATTCGTTTT
* * *
130188275 TTTTTATTATATTTGTTTT
1 TTTTAATTAAATTCGTTTT
130188294 TT
1 TT
130188296 ATTTTGTAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (19 bp):
TTTTAATTAAATTCGTTTT
Found at i:130188942 original size:18 final size:18
Alignment explanation
Indices: 130188919--130188954 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
130188909 AAAATCTTAT
130188919 TTTAATTTAT-TTATACAC
1 TTTAATTT-TGTTATACAC
130188937 TTTAATTTTGTTATACAC
1 TTTAATTTTGTTATACAC
130188955 ACTCTATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 16 0.94
ACGTcount: A:0.31, C:0.11, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTAATTTTGTTATACAC
Found at i:130201641 original size:28 final size:29
Alignment explanation
Indices: 130201600--130201664 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
130201590 TTTTTAAGAT
* *
130201600 TTTTATAAT-TTTTTTCTAATTTTAATAAC
1 TTTTATAATATTTTTT-AAAATTTAATAAC
*
130201629 TTTTA-AATATTTTTTAAAATTTAATAAT
1 TTTTATAATATTTTTTAAAATTTAATAAC
130201657 TTTTATAA
1 TTTTATAA
130201665 CTTTTATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (29 bp):
TTTTATAATATTTTTTAAAATTTAATAAC
Found at i:130201641 original size:49 final size:48
Alignment explanation
Indices: 130201544--130201660 Score: 132
Period size: 48 Copynumber: 2.4 Consensus size: 48
130201534 TACGACTTTA
*
130201544 TAAAATTTTATAACTTTTTTTTCTATATTTCTATATATTTTACAATTTTT
1 TAAAATTTTATAA--TTTTTTTCTATATTTCTATATATTTTAAAATTTTT
*
130201594 TAAGATTTTTATAATTTTTTTCTA-ATTT-TA-ATAACTTTTAAATATTTTT
1 TAA-AATTTTATAATTTTTTTCTATATTTCTATAT-A-TTTTAAA-ATTTTT
*
130201643 TAAAATTTAATAATTTTT
1 TAAAATTTTATAATTTTT
130201661 ATAACTTTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
46 2 0.03
47 3 0.05
48 23 0.39
49 19 0.32
50 3 0.05
51 9 0.15
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (48 bp):
TAAAATTTTATAATTTTTTTCTATATTTCTATATATTTTAAAATTTTT
Found at i:130201670 original size:19 final size:19
Alignment explanation
Indices: 130201616--130201681 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
130201606 AATTTTTTTC
*
130201616 TAATTTTAATAACTTTTAA
1 TAATTTTTATAACTTTTAA
**
130201635 -ATATTTTT-TAAAATTTAA
1 TA-ATTTTTATAACTTTTAA
*
130201653 TAATTTTTATAACTTTTAT
1 TAATTTTTATAACTTTTAA
*
130201672 TGATTTTTAT
1 TAATTTTTAT
130201682 TTTTTTATCA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
18 15 0.41
19 22 0.59
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (19 bp):
TAATTTTTATAACTTTTAA
Found at i:130203415 original size:21 final size:21
Alignment explanation
Indices: 130203391--130203430 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
130203381 AAACTTGTTA
130203391 TTTTGCTGCTATTTTCCCATG
1 TTTTGCTGCTATTTTCCCATG
* * *
130203412 TTTTGTTGTTGTTTTCCCA
1 TTTTGCTGCTATTTTCCCA
130203431 CTTTTTACCA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.20, G:0.15, T:0.57
Consensus pattern (21 bp):
TTTTGCTGCTATTTTCCCATG
Found at i:130203976 original size:26 final size:26
Alignment explanation
Indices: 130203934--130203984 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
130203924 AATTTTGATT
*
130203934 AAAAAATTAAATTATA-CTTATAAAAG
1 AAAAAATTAAATAATACCTT-TAAAAG
130203960 AAAAAAGTTAAA-AATACCTTTAAAA
1 AAAAAA-TTAAATAATACCTTTAAAA
130203985 TATTTTTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (26 bp):
AAAAAATTAAATAATACCTTTAAAAG
Found at i:130204139 original size:18 final size:17
Alignment explanation
Indices: 130204087--130204140 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
130204077 ATCAAACTCT
*
130204087 TAAATA-ATAATATAGA
1 TAAATATATAATATATA
* *
130204103 TAAATATTAAAATTTATA
1 TAAATA-TATAATATATA
130204121 TAAATATATAATATGATA
1 TAAATATATAATAT-ATA
130204139 TA
1 TA
130204141 CAAAAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
16 6 0.20
17 6 0.20
18 18 0.60
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (17 bp):
TAAATATATAATATATA
Found at i:130204422 original size:22 final size:23
Alignment explanation
Indices: 130204397--130204450 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
130204387 GTTTTTATGG
*
130204397 ATTTTGAA-TATTCTTTGATAAA-
1 ATTTTAAAGTATT-TTTGATAAAT
*
130204419 ATTTTAAAGTATTTTTTATAAAT
1 ATTTTAAAGTATTTTTGATAAAT
130204442 ATTTCTAAA
1 ATTT-TAAA
130204451 AATAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 15 0.56
23 8 0.30
24 4 0.15
ACGTcount: A:0.39, C:0.04, G:0.06, T:0.52
Consensus pattern (23 bp):
ATTTTAAAGTATTTTTGATAAAT
Found at i:130205019 original size:39 final size:39
Alignment explanation
Indices: 130204938--130205020 Score: 98
Period size: 39 Copynumber: 2.2 Consensus size: 39
130204928 TTGATTATAT
* * * *
130204938 TTTAA-AAAAATTGTTTATTTAGACAAATGTTAGGGTTT
1 TTTAATAAAAAATATTTATTTAGACAAATGTTAGGCTTA
*
130204976 TTTAATAAAAAATATTTATTTAGATAAA-GTGTAGGCTTA
1 TTTAATAAAAAATATTTATTTAGACAAATGT-TAGGCTTA
130205015 TTTAAT
1 TTTAAT
130205021 TTTTTTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
38 7 0.18
39 31 0.82
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (39 bp):
TTTAATAAAAAATATTTATTTAGACAAATGTTAGGCTTA
Found at i:130210167 original size:14 final size:13
Alignment explanation
Indices: 130210132--130210167 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
130210122 CAAGTCGTTC
130210132 AAAAAAAAAAAGT
1 AAAAAAAAAAAGT
130210145 AACAAAAAAAAAGT
1 AA-AAAAAAAAAGT
*
130210159 AAAATAAAA
1 AAAAAAAAA
130210168 TCCGCAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.83, C:0.03, G:0.06, T:0.08
Consensus pattern (13 bp):
AAAAAAAAAAAGT
Found at i:130210309 original size:18 final size:18
Alignment explanation
Indices: 130210283--130210333 Score: 52
Period size: 20 Copynumber: 2.8 Consensus size: 18
130210273 TTATAAATAA
*
130210283 ATTCTCATCTTTTTTTTT
1 ATTCACATCTTTTTTTTT
*
130210301 ATTCACATCATTATTCTTTT
1 ATTCACATC-TT-TTTTTTT
130210321 ATTCA-AT-TTTTTT
1 ATTCACATCTTTTTT
130210334 CTCCAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 3 0.11
17 2 0.07
18 8 0.29
19 4 0.14
20 11 0.39
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTCACATCTTTTTTTTT
Found at i:130210606 original size:3 final size:3
Alignment explanation
Indices: 130210600--130210632 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
130210590 CTTCATCTTC
130210600 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
130210633 TTTCTTCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:130214428 original size:29 final size:31
Alignment explanation
Indices: 130214383--130214449 Score: 79
Period size: 29 Copynumber: 2.2 Consensus size: 31
130214373 AGTTGTTCGC
*
130214383 ATAAGGGTTAACGATTTT-GAAATG-G-TCAA
1 ATAAGGGTAAACGATTTTCG-AATGCGCTCAA
130214412 ATAAGGGTCAAAC-ATTTTCGAATGCGCTCAA
1 ATAAGGGT-AAACGATTTTCGAATGCGCTCAA
130214443 ATAAGGG
1 ATAAGGG
130214450 CTTTCAGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
29 17 0.52
30 5 0.15
31 11 0.33
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (31 bp):
ATAAGGGTAAACGATTTTCGAATGCGCTCAA
Found at i:130220954 original size:2 final size:2
Alignment explanation
Indices: 130220947--130220980 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
130220937 TGGCATTCCG
* *
130220947 AT AT AT AT AT AT AT AT AT AT AT AT GT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130220981 GCATGAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130228192 original size:38 final size:39
Alignment explanation
Indices: 130228150--130228225 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 39
130228140 AAATTTACTG
*
130228150 CATAAAAATAAATTTACAAAAA-GTGCAAGGACTTATGA
1 CATAAAAATAAATTTACAAAAAGGTACAAGGACTTATGA
* *
130228188 CATAAAGATAAATTTACAAAAAGGTACAGGGACTTATG
1 CATAAAAATAAATTTACAAAAAGGTACAAGGACTTATG
130228226 GCATGGCCAC
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 21 0.62
39 13 0.38
ACGTcount: A:0.50, C:0.11, G:0.16, T:0.24
Consensus pattern (39 bp):
CATAAAAATAAATTTACAAAAAGGTACAAGGACTTATGA
Found at i:130231556 original size:34 final size:33
Alignment explanation
Indices: 130231506--130231584 Score: 86
Period size: 34 Copynumber: 2.4 Consensus size: 33
130231496 AACCGGCGAC
* * *
130231506 AATTGAATTTAATATATTTATAATAATATTTTT
1 AATTAAATTTAATATATATATAATAATATTTAT
* * * *
130231539 GATTAAATTTATATATATATGTATTTATATTTAT
1 AATTAAATTTA-ATATATATATAATAATATTTAT
130231573 AATTAAATTTAA
1 AATTAAATTTAA
130231585 ATAAAATATT
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
33 10 0.27
34 27 0.73
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (33 bp):
AATTAAATTTAATATATATATAATAATATTTAT
Found at i:130233345 original size:58 final size:60
Alignment explanation
Indices: 130233229--130233364 Score: 172
Period size: 58 Copynumber: 2.3 Consensus size: 60
130233219 CCTAAATGAA
* *
130233229 AAAGTTTAGGTACCAAATTGGGCCCCAAAAAAGTTTAGATACCAAATTATAAAAAAGTGT
1 AAAGTTCAGGTACCAAATTGGGCCCAAAAAAAGTTTAGATACCAAATTATAAAAAAGTGT
* * *
130233289 CAAGTTCAGGTACCAAATTGGG-CTAAAAAATAGTTT-G-TACCAAATTGGT-AAAAAGTGT
1 AAAGTTCAGGTACCAAATTGGGCCCAAAAAA-AGTTTAGATACCAAATT-ATAAAAAAGTGT
*
130233347 AAAGTTCAGATACCAAAT
1 AAAGTTCAGGTACCAAAT
130233365 GTTATATTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
58 34 0.51
59 8 0.12
60 25 0.37
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26
Consensus pattern (60 bp):
AAAGTTCAGGTACCAAATTGGGCCCAAAAAAAGTTTAGATACCAAATTATAAAAAAGTGT
Found at i:130233363 original size:31 final size:31
Alignment explanation
Indices: 130233258--130233364 Score: 84
Period size: 31 Copynumber: 3.6 Consensus size: 31
130233248 GGGCCCCAAA
* *
130233258 AAAGTTTAGATACCAAATT-ATAAAAAAGTGT
1 AAAGTTCAGATACCAAATTGGT-AAAAAGTGT
* *
130233289 CAAGTTCAGGTACCAAATTGGGCTAAAAA----
1 AAAGTTCAGATACCAAATT-GG-TAAAAAGTGT
* *
130233318 ATAGTT-TG-TACCAAATTGGTAAAAAGTGT
1 AAAGTTCAGATACCAAATTGGTAAAAAGTGT
130233347 AAAGTTCAGATACCAAAT
1 AAAGTTCAGATACCAAAT
130233365 GTTATATTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
25 6 0.10
26 2 0.03
27 9 0.16
28 1 0.02
29 9 0.16
30 1 0.02
31 24 0.41
33 5 0.09
34 1 0.02
ACGTcount: A:0.45, C:0.11, G:0.17, T:0.27
Consensus pattern (31 bp):
AAAGTTCAGATACCAAATTGGTAAAAAGTGT
Found at i:130236979 original size:2 final size:2
Alignment explanation
Indices: 130236972--130236998 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
130236962 TTTACAAGTA
130236972 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
130236999 ACTACAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:130242782 original size:17 final size:16
Alignment explanation
Indices: 130242747--130242802 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 16
130242737 TGACATAAAC
* *
130242747 TTAAAAATTATTTTTT
1 TTAAAAATAATTATTT
130242763 TTAAAATATAATTATTT
1 TTAAAA-ATAATTATTT
*
130242780 TTAACAGAATTATTA-TT
1 TTAA-A-AATAATTATTT
130242797 TTAAAA
1 TTAAAA
130242803 TATATATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 1 0.03
16 7 0.21
17 18 0.53
18 7 0.21
19 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (16 bp):
TTAAAAATAATTATTT
Found at i:130243114 original size:18 final size:20
Alignment explanation
Indices: 130243087--130243125 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
130243077 TTTTAAATTA
130243087 TATTAAACATA-ATT-TAAT
1 TATTAAACATATATTATAAT
*
130243105 TATTATACATATATTATAAT
1 TATTAAACATATATTATAAT
130243125 T
1 T
130243126 TATAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 3 0.17
20 5 0.28
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTAAACATATATTATAAT
Found at i:130247150 original size:2 final size:2
Alignment explanation
Indices: 130247143--130247168 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
130247133 GTATCTGAAC
130247143 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
130247169 GAACTATTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130247798 original size:2 final size:2
Alignment explanation
Indices: 130247788--130247819 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
130247778 AAAAATTTAA
130247788 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
130247820 AAATAAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:130249536 original size:19 final size:19
Alignment explanation
Indices: 130249514--130249551 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
130249504 AATATATCAT
130249514 AAAACTTTAAAACAAATCG
1 AAAACTTTAAAACAAATCG
130249533 AAAACTTTAAAACAAATCG
1 AAAACTTTAAAACAAATCG
130249552 TTTGTGGTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.16, G:0.05, T:0.21
Consensus pattern (19 bp):
AAAACTTTAAAACAAATCG
Found at i:130260411 original size:19 final size:20
Alignment explanation
Indices: 130260363--130260412 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
130260353 AAATCTAAAA
*
130260363 AATATTAATAATATATTTAT
1 AATATTATTAATATATTTAT
130260383 AATATT-TTAATA-ATTT-T
1 AATATTATTAATATATTTAT
130260400 AATGATTATTAAT
1 AAT-ATTATTAAT
130260413 TTTTAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.15
18 7 0.26
19 10 0.37
20 6 0.22
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (20 bp):
AATATTATTAATATATTTAT
Found at i:130267359 original size:2 final size:2
Alignment explanation
Indices: 130267352--130267381 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
130267342 AATTACACAA
130267352 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
130267382 TACAAAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130276695 original size:242 final size:231
Alignment explanation
Indices: 130276215--130276748 Score: 644
Period size: 242 Copynumber: 2.3 Consensus size: 231
130276205 TCACCAACTG
** * * *
130276215 TTCAAGACTAAAATGTTCACTCCCATACATAAATCTCAAACACCATAAACTCAGTTTTCCAGCAA
1 TTCAAGACTAAAATCCTCACTCCTATA-TTAAATCTCAAACACCCTAAACTCAGTTTTCCAGCAA
* * * * *
130276280 TCACATACCAACCAACTGCAAAAAACTCACTTGTAAACCGAACTCACCGACGTTTCGAGACTAAA
65 CCACATACCAACCAAATGCAAAAAACTCAC-TCTAAACCGAACTCACCAACGTTTCAAGACTAAA
*
130276345 ATCTTAACTCCTATATATTAATCTCAAATAATAAACTCGGTTTTCCAGCAATCACGTACCAACCA
129 ATCTTAACTCCTATATATTAATCTCAAACAATAAACTCGGTTTTCCAGCAATCACGTACCAACCA
* * *
130276410 ACTGCAATAATTCACTTGAAAACTGAACTCAACGATGT
194 AATGCAATAATTCACTCGAAAACTGAACTCAACGACGT
* * *
130276448 TTCAAGACTAAAATCCTCACTACTATATGTATATCTCAAACGCCCTAAACTCAGTTTTCCAGCAA
1 TTCAAGACTAAAATCCTCACTCCTATAT-TAAATCTCAAACACCCTAAACTCAGTTTTCCAGCAA
* ** * *
130276513 CCACGTACCAACCAAATGCAGTAAATTACAC-CTAAACCGAACTCACCAACAG-TTCAAGACTGA
65 CCACATACCAACCAAATGCAAAAAACT-CACTCTAAACCGAACTCACCAAC-GTTTCAAGACTAA
* * *
130276576 AATCTTCACTCCTATAT-GTATATCTCAAACACCCTAAACTCGGTTTTCCAGCAATCACATACCA
128 AATCTTAACTCCTATATATTA-ATCTCAAACA--ATAAACTCGGTTTTCCAGCAAT--C--A-C-
*
130276640 AGTTACCAACCAAATGCAATAATTCACTCGAAAATTGAACTC-ACAGACGT
184 -G-TACCAACCAAATGCAATAATTCACTCGAAAACTGAACTCAAC-GACGT
130276690 TTCAAGACTAAAATCCTCACTCCTATACTTAAATCTCAAACACCCTAAACTCAGTTTTC
1 TTCAAGACTAAAATCCTCACTCCTATA-TTAAATCTCAAACACCCTAAACTCAGTTTTC
130276749 TGGCTATCAC
Statistics
Matches: 256, Mismatches: 29, Indels: 23
0.83 0.09 0.07
Matches are distributed among these distances:
231 2 0.01
232 51 0.20
233 78 0.30
234 24 0.09
236 1 0.00
238 1 0.00
239 1 0.00
241 3 0.01
242 94 0.37
243 1 0.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.25
Consensus pattern (231 bp):
TTCAAGACTAAAATCCTCACTCCTATATTAAATCTCAAACACCCTAAACTCAGTTTTCCAGCAAC
CACATACCAACCAAATGCAAAAAACTCACTCTAAACCGAACTCACCAACGTTTCAAGACTAAAAT
CTTAACTCCTATATATTAATCTCAAACAATAAACTCGGTTTTCCAGCAATCACGTACCAACCAAA
TGCAATAATTCACTCGAAAACTGAACTCAACGACGT
Found at i:130276715 original size:125 final size:118
Alignment explanation
Indices: 130276215--130276748 Score: 543
Period size: 117 Copynumber: 4.5 Consensus size: 118
130276205 TCACCAACTG
* * * * *
130276215 TTCAAGACTAAAATGTTCACTCCCATACATAAATCTCAAACACCATAAACTCAGTTTTCCAGCAA
1 TTCAAGACTAAAATCTTCACTCCTATATATATATCTCAAACACCCTAAACTCAGTTTTCCAGCAA
* * * * * * *
130276280 T-CACATACCAACCAACTGCAAAAAACTCACTTGTAAACCGAACTCACCGACGT
66 TCCACGTACCAACCAAATGC-AATAATTCACTCGAAAACCGAACTCACAGACGT
* * * * *
130276333 TTCGAGACTAAAATCTTAACTCCTATATAT-TAATCTCAAATA--ATAAACTCGGTTTTCCAGCA
1 TTCAAGACTAAAATCTTCACTCCTATATATAT-ATCTCAAACACCCTAAACTCAGTTTTCCAGCA
* * * *
130276395 AT-CACGTACCAACCAACTGCAATAATTCACTTGAAAACTGAACTCA-ACGATGT
65 ATCCACGTACCAACCAAATGCAATAATTCACTCGAAAACCGAACTCACA-GACGT
* * * *
130276448 TTCAAGACTAAAATCCTCACTACTATATGTATATCTCAAACGCCCTAAACTCAGTTTTCCAGCAA
1 TTCAAGACTAAAATCTTCACTCCTATATATATATCTCAAACACCCTAAACTCAGTTTTCCAGCAA
* *
130276513 -CCACGTACCAACCAAATGCAGTAAATTACAC-C-TAAACCGAACTCACCA-ACAG-
66 TCCACGTACCAACCAAATGCAAT-AATT-CACTCGAAAACCGAACTCA-CAGAC-GT
* * *
130276565 TTCAAGACTGAAATCTTCACTCCTATATGTATATCTCAAACACCCTAAACTCGGTTTTCCAGCAA
1 TTCAAGACTAAAATCTTCACTCCTATATATATATCTCAAACACCCTAAACTCAGTTTTCCAGCAA
**
130276630 TCACATACCAAGTTACCAACCAAATGCAATAATTCACTCGAAAATTGAACTCACAGACGT
66 TC-C--A-C--G-TACCAACCAAATGCAATAATTCACTCGAAAACCGAACTCACAGACGT
* *
130276690 TTCAAGACTAAAATCCTCACTCCTATACT-TAAATCTCAAACACCCTAAACTCAGTTTTC
1 TTCAAGACTAAAATCTTCACTCCTATA-TATATATCTCAAACACCCTAAACTCAGTTTTC
130276749 TGGCTATCAC
Statistics
Matches: 349, Mismatches: 43, Indels: 41
0.81 0.10 0.09
Matches are distributed among these distances:
115 59 0.17
116 39 0.11
117 110 0.32
118 40 0.11
119 5 0.01
121 1 0.00
122 1 0.00
123 3 0.01
124 9 0.03
125 81 0.23
126 1 0.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.25
Consensus pattern (118 bp):
TTCAAGACTAAAATCTTCACTCCTATATATATATCTCAAACACCCTAAACTCAGTTTTCCAGCAA
TCCACGTACCAACCAAATGCAATAATTCACTCGAAAACCGAACTCACAGACGT
Found at i:130280479 original size:56 final size:56
Alignment explanation
Indices: 130280392--130280497 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 56
130280382 AAAGAAATAT
130280392 TTAGTTTCAGAATTTGGTAAATTTTTAAATTTAATCCCTTAATTTT-TTAATTCATA
1 TTAGTTTCAGAATTTGGTAAATTTTTAAATTTAAT-CCTTAATTTTATTAATTCATA
* * * *
130280448 TTAGTTTTA-AATTATGGT-AATTTTCTCAATTTGATCCTTGATTTTATTAA
1 TTAGTTTCAGAATT-TGGTAAATTTT-TAAATTTAATCCTTAATTTTATTAA
130280498 GGCATAACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
55 19 0.44
56 24 0.56
ACGTcount: A:0.30, C:0.08, G:0.08, T:0.53
Consensus pattern (56 bp):
TTAGTTTCAGAATTTGGTAAATTTTTAAATTTAATCCTTAATTTTATTAATTCATA
Found at i:130281414 original size:14 final size:14
Alignment explanation
Indices: 130281397--130281423 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
130281387 TCATATTAAA
130281397 TTAAATTAATTATT
1 TTAAATTAATTATT
130281411 TTAAATTAATTAT
1 TTAAATTAATTAT
130281424 CATTTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTAAATTAATTATT
Found at i:130281654 original size:16 final size:16
Alignment explanation
Indices: 130281635--130281666 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
130281625 TATTCAATTG
130281635 TTTTACTATTATTTAAT
1 TTTTA-TATTATTTAAT
130281652 TTTTATATTATTTAA
1 TTTTATATTATTTAA
130281667 AAATAATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTATATTATTTAAT
Found at i:130282120 original size:11 final size:11
Alignment explanation
Indices: 130282086--130282128 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
130282076 TTAAAATCTT
*
130282086 AATAAAAGAAA
1 AATAAAATAAA
*
130282097 AATAATATAAA
1 AATAAAATAAA
130282108 AATAAAAATAAA
1 AAT-AAAATAAA
*
130282120 AACAAAATA
1 AATAAAATA
130282129 TTTAAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.16
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:130284207 original size:92 final size:92
Alignment explanation
Indices: 130284046--130284216 Score: 261
Period size: 92 Copynumber: 1.9 Consensus size: 92
130284036 CGCTGAAGTG
* * * * *
130284046 CATTATCCTCCTATTTAAGAGTTGGGGAGGGGCCATGGGTAGTTCTAAGTATTGTATAAACAAAA
1 CATTATCCTCCTATTCAAGAATTGCGAAGGGACCATGGGTAGTTCTAAGTATTGTATAAACAAAA
130284111 AGCAGATATGATAAGAACATACAATGA
66 AGCAGATATGATAAGAACATACAATGA
* * *
130284138 CATTATCCTCCTATTCAAGAATTGCGAAGGGACTATGGGTAGTTCTAAGTATTGTATCAACAAAG
1 CATTATCCTCCTATTCAAGAATTGCGAAGGGACCATGGGTAGTTCTAAGTATTGTATAAACAAAA
*
130284203 AGCAGATGTGATAA
66 AGCAGATATGATAA
130284217 ACAACCTATA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 70 1.00
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (92 bp):
CATTATCCTCCTATTCAAGAATTGCGAAGGGACCATGGGTAGTTCTAAGTATTGTATAAACAAAA
AGCAGATATGATAAGAACATACAATGA
Found at i:130287548 original size:20 final size:19
Alignment explanation
Indices: 130287523--130287562 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
130287513 TATATATTAA
130287523 TTAAAAAAATATAAACATAT
1 TTAAAAAAATATAAA-ATAT
* *
130287543 TTAAAATAATTTAAAATAT
1 TTAAAAAAATATAAAATAT
130287562 T
1 T
130287563 AAATATTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
TTAAAAAAATATAAAATAT
Found at i:130291097 original size:97 final size:96
Alignment explanation
Indices: 130290927--130291109 Score: 267
Period size: 97 Copynumber: 1.9 Consensus size: 96
130290917 AATCAAGTTG
* * * * *
130290927 GGTCAAGTTTGGGTTTTTGGGTTTGGGAAAAATTGGTAAGTCGATGTCAGATGCATATCTTAATA
1 GGTCAAGTTTAGGTTTTTGGATTCGGGAAAAATTGATAAGTCGATGTCAGATGCATATCTTAACA
*
130290992 TGGGTACGAGAATATGATAGAAAATTTAATA
66 TGGGTACGAGAATATAATAGAAAATTTAATA
* * * *
130291023 GGTCGAGTTTAGGTTTTTGGATTCCGGGAAAAATTGATAAGTCTATGTCGGATGTATATCTTAAC
1 GGTCAAGTTTAGGTTTTTGGATT-CGGGAAAAATTGATAAGTCGATGTCAGATGCATATCTTAAC
130291088 ATGGGTACGAGAATATAATAGA
65 ATGGGTACGAGAATATAATAGA
130291110 GAACTTAAAA
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
96 20 0.26
97 56 0.74
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.34
Consensus pattern (96 bp):
GGTCAAGTTTAGGTTTTTGGATTCGGGAAAAATTGATAAGTCGATGTCAGATGCATATCTTAACA
TGGGTACGAGAATATAATAGAAAATTTAATA
Found at i:130294064 original size:6 final size:6
Alignment explanation
Indices: 130294053--130294093 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
130294043 TCCCCATCTA
* * *
130294053 GGTCCG GGTCCG GGTCCA GGTCCG GGTCCA GGTCTG GGTCC
1 GGTCCG GGTCCG GGTCCG GGTCCG GGTCCG GGTCCG GGTCC
130294094 TTCCCTTTCG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.05, C:0.32, G:0.44, T:0.20
Consensus pattern (6 bp):
GGTCCG
Found at i:130294074 original size:12 final size:12
Alignment explanation
Indices: 130294053--130294093 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
130294043 TCCCCATCTA
*
130294053 GGTCCGGGTCCG
1 GGTCCAGGTCCG
130294065 GGTCCAGGTCCG
1 GGTCCAGGTCCG
*
130294077 GGTCCAGGTCTG
1 GGTCCAGGTCCG
130294089 GGTCC
1 GGTCC
130294094 TTCCCTTTCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.05, C:0.32, G:0.44, T:0.20
Consensus pattern (12 bp):
GGTCCAGGTCCG
Found at i:130294093 original size:18 final size:18
Alignment explanation
Indices: 130294052--130294086 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
130294042 TTCCCCATCT
*
130294052 AGGTCCGGGTCCGGGTCC
1 AGGTCCGGGTCCAGGTCC
130294070 AGGTCCGGGTCCAGGTC
1 AGGTCCGGGTCCAGGTC
130294087 TGGGTCCTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.31, G:0.43, T:0.17
Consensus pattern (18 bp):
AGGTCCGGGTCCAGGTCC
Found at i:130298216 original size:15 final size:16
Alignment explanation
Indices: 130298196--130298228 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
130298186 ATATATATTT
130298196 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
130298211 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
130298228 T
1 T
130298229 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:130298314 original size:22 final size:22
Alignment explanation
Indices: 130298275--130298333 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
130298265 GTTTTAAGAA
*
130298275 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
130298296 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
130298318 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
130298334 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:130298350 original size:26 final size:24
Alignment explanation
Indices: 130298304--130298363 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
130298294 ATTTGTTTTA
*
130298304 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
130298328 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
130298354 TTTTTTATTT
1 ATATTTATTT
130298364 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:130309328 original size:177 final size:177
Alignment explanation
Indices: 130309024--130309380 Score: 644
Period size: 177 Copynumber: 2.0 Consensus size: 177
130309014 ACAGAAGACA
130309024 TTTATGCTGTGATTAATTATCCTTAATTGCTCACTTTCAACATTGACAGGGATTAAATTGCTCCA
1 TTTATGCTGTGATTAATTATCCTTAATTGCTCACTTTCAACATTGACAGGGATTAAATTGCTCCA
* *
130309089 ATTCTTTTGAGAGGAACCAATTTGCTCAATTTTGAAATTGAGAGGGGCTAGAAAGGTCTTTTTAC
66 ATTCTTTTGAGAGGAACCAATTTGCTCAATTTTGAAATTGAGAGGAGCAAGAAAGGTCTTTTTAC
*
130309154 CGATTAAAAATAACCAAATTAAAGTATAGTGACTACACCTACAACTT
131 CAATTAAAAATAACCAAATTAAAGTATAGTGACTACACCTACAACTT
*
130309201 TTTATG-TCGTGATTAATTGTCCTTAATTGCTCACTTTCAACATTGACAGGGATTAAATTGCTCC
1 TTTATGCT-GTGATTAATTATCCTTAATTGCTCACTTTCAACATTGACAGGGATTAAATTGCTCC
*
130309265 AATTTTTTTGAGAGGAACCAATTTGCTCAATTTTGAAATTGAGAGGAGCAAGAAAGGTCTTTTTA
65 AATTCTTTTGAGAGGAACCAATTTGCTCAATTTTGAAATTGAGAGGAGCAAGAAAGGTCTTTTTA
*
130309330 CCAATTAAAAATAACCAAATTAAAGTATAGTGACTACATCTACAACTT
130 CCAATTAAAAATAACCAAATTAAAGTATAGTGACTACACCTACAACTT
130309378 TTT
1 TTT
130309381 TAAAAGTAAA
Statistics
Matches: 173, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
176 1 0.01
177 172 0.99
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (177 bp):
TTTATGCTGTGATTAATTATCCTTAATTGCTCACTTTCAACATTGACAGGGATTAAATTGCTCCA
ATTCTTTTGAGAGGAACCAATTTGCTCAATTTTGAAATTGAGAGGAGCAAGAAAGGTCTTTTTAC
CAATTAAAAATAACCAAATTAAAGTATAGTGACTACACCTACAACTT
Found at i:130320991 original size:6 final size:6
Alignment explanation
Indices: 130320980--130321043 Score: 92
Period size: 6 Copynumber: 10.7 Consensus size: 6
130320970 GGTCTTATTC
* *
130320980 ATATAT ATATAT ATATAT ATATAT ATATAT ATATGT ATATGT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
* *
130321028 GTATAT GTATAT ATAT
1 ATATAT ATATAT ATAT
130321044 TGGGTTTACT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (6 bp):
ATATAT
Found at i:130320993 original size:8 final size:8
Alignment explanation
Indices: 130320980--130321043 Score: 92
Period size: 8 Copynumber: 8.0 Consensus size: 8
130320970 GGTCTTATTC
130320980 ATATATAT
1 ATATATAT
130320988 ATATATAT
1 ATATATAT
130320996 ATATATAT
1 ATATATAT
130321004 ATATATAT
1 ATATATAT
*
130321012 ATGTATAT
1 ATATATAT
*
130321020 GTATATAT
1 ATATATAT
* *
130321028 GTATATGT
1 ATATATAT
130321036 ATATATAT
1 ATATATAT
130321044 TGGGTTTACT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 50 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (8 bp):
ATATATAT
Found at i:130320999 original size:14 final size:14
Alignment explanation
Indices: 130320980--130321043 Score: 92
Period size: 14 Copynumber: 4.6 Consensus size: 14
130320970 GGTCTTATTC
130320980 ATATATATATATAT
1 ATATATATATATAT
130320994 ATATATATATATAT
1 ATATATATATATAT
* *
130321008 ATATATGTATATGT
1 ATATATATATATAT
* *
130321022 ATATATGTATATGT
1 ATATATATATATAT
130321036 ATATATAT
1 ATATATAT
130321044 TGGGTTTACT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 47 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
ATATATATATATAT
Found at i:130326039 original size:27 final size:28
Alignment explanation
Indices: 130326004--130326062 Score: 77
Period size: 27 Copynumber: 2.1 Consensus size: 28
130325994 TTAAGATGAC
130326004 TATATAAAAATT-TTAATAAATAAAA-AA
1 TATAT-AAAATTATTAATAAATAAAATAA
* *
130326031 TATATAAAATTATTAATTATTAAAATAA
1 TATATAAAATTATTAATAAATAAAATAA
130326059 TATA
1 TATA
130326063 ATGTAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 6 0.21
27 16 0.57
28 6 0.21
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
TATATAAAATTATTAATAAATAAAATAA
Found at i:130330829 original size:13 final size:13
Alignment explanation
Indices: 130330785--130330828 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
130330775 AAACCAGTGC
* *
130330785 AATTTTCGCTTCT
1 AATTTTCCCTTCA
*
130330798 CATTTTCCCTTCA
1 AATTTTCCCTTCA
130330811 AATTTTCCC-TCA
1 AATTTTCCCTTCA
130330823 AATTTT
1 AATTTT
130330829 TGTTTTTCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
12 9 0.33
13 18 0.67
ACGTcount: A:0.20, C:0.27, G:0.02, T:0.50
Consensus pattern (13 bp):
AATTTTCCCTTCA
Found at i:130333718 original size:22 final size:21
Alignment explanation
Indices: 130333693--130333747 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 21
130333683 TAGAATAAAT
130333693 TTTATATTTTATTAGTT-TTATA
1 TTTATATTTTATTA-TTATT-TA
*
130333715 TTTATATTTTATGATTATTTA
1 TTTATATTTTATTATTATTTA
130333736 TTT-TATTTTATT
1 TTTATATTTTATT
130333748 TAATAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 8 0.27
21 7 0.23
22 15 0.50
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTATATTTTATTATTATTTA
Found at i:130333749 original size:14 final size:14
Alignment explanation
Indices: 130333691--130333747 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 14
130333681 TTTAGAATAA
130333691 ATTTTATATTTTATT
1 ATTTTATA-TTTATT
130333706 AGTTTTATATTTA-T
1 A-TTTTATATTTATT
130333720 ATTTTATGA-TTATTT
1 ATTTTAT-ATTTA-TT
130333735 ATTTTAT-TTTATT
1 ATTTTATATTTATT
130333748 TAATAAAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.30
14 6 0.16
15 13 0.35
16 7 0.19
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (14 bp):
ATTTTATATTTATT
Found at i:130334417 original size:59 final size:59
Alignment explanation
Indices: 130334312--130334443 Score: 176
Period size: 59 Copynumber: 2.2 Consensus size: 59
130334302 TTTTAGTAAA
* *
130334312 GGTCACCCAACTATGATTTTTTTCTTTTTTGTTCAACTAACGATGAAAAGTTACAAAAT
1 GGTCACCCAACTATGATTTTTTTCTTTTTTGGTCAACCAACGATGAAAAGTTACAAAAT
* * * *
130334371 GGTCACCCAACTGTGGTTTTTTT-TCTTTTTGGTCACCCAACTATGAAAAGTTACAAAAT
1 GGTCACCCAACTATGATTTTTTTCT-TTTTTGGTCAACCAACGATGAAAAGTTACAAAAT
* *
130334430 GGTCATCAAACTAT
1 GGTCACCCAACTAT
130334444 TCAATTTTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 1 0.02
59 62 0.98
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (59 bp):
GGTCACCCAACTATGATTTTTTTCTTTTTTGGTCAACCAACGATGAAAAGTTACAAAAT
Found at i:130340241 original size:90 final size:93
Alignment explanation
Indices: 130340084--130340278 Score: 229
Period size: 90 Copynumber: 2.1 Consensus size: 93
130340074 CGGGGTTGCA
** * * **
130340084 TTAACTGTTATTGTGGATTATTTTTCACATGTGTGTGTGTGTGTGCACGCATGTTTGTTTA-T--
1 TTAACTGTTATTGTGGAAAATTTTTCACATATATGTGTGTGTGTGCACGCATGCCTGTTTATTAA
130340146 ATATATGATGAGTGTAAATGGGATAGCT
66 ATATATGATGAGTGTAAATGGGATAGCT
* * *
130340174 TTAACTGTTATTGTGGAAAATTTTTCATATATATGTGTGTGTGTG-A-GCTTGCACCTGTTTGTT
1 TTAACTGTTATTGTGGAAAATTTTTCACATATATGTGTGTGTGTGCACGCATG--CCTGTTT-AT
* *
130340237 TATATATATGATGAGTGTAAATGGGATTGCT
63 TAAATATATGATGAGTGTAAATGGGATAGCT
130340268 TTAACTGTTAT
1 TTAACTGTTAT
130340279 CATCAAAGAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
88 4 0.04
89 1 0.01
90 45 0.51
92 1 0.01
94 38 0.43
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.45
Consensus pattern (93 bp):
TTAACTGTTATTGTGGAAAATTTTTCACATATATGTGTGTGTGTGCACGCATGCCTGTTTATTAA
ATATATGATGAGTGTAAATGGGATAGCT
Found at i:130340262 original size:94 final size:90
Alignment explanation
Indices: 130340084--130340278 Score: 284
Period size: 94 Copynumber: 2.1 Consensus size: 90
130340074 CGGGGTTGCA
** * *
130340084 TTAACTGTTATTGTGGATTATTTTTCACATGTGTGTGTGTGTGTGCACGCATGTTTGTTTATATA
1 TTAACTGTTATTGTGGAAAATTTTTCACATATATGTGTGTGTGTGCACGCATGTTTGTTTATATA
130340149 TATGATGAGTGTAAATGGGATAGCT
66 TATGATGAGTGTAAATGGGATAGCT
*
130340174 TTAACTGTTATTGTGGAAAATTTTTCATATATATGTGTGTGTGTG-AGCTTGCACCTGTTTGTTT
1 TTAACTGTTATTGTGGAAAATTTTTCACATATATGTGTGTGTGTGCA-C--GCA--TGTTTGTTT
*
130340238 ATATATATGATGAGTGTAAATGGGATTGCT
61 ATATATATGATGAGTGTAAATGGGATAGCT
130340268 TTAACTGTTAT
1 TTAACTGTTAT
130340279 CATCAAAGAA
Statistics
Matches: 94, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
89 1 0.01
90 41 0.44
92 3 0.03
94 49 0.52
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.45
Consensus pattern (90 bp):
TTAACTGTTATTGTGGAAAATTTTTCACATATATGTGTGTGTGTGCACGCATGTTTGTTTATATA
TATGATGAGTGTAAATGGGATAGCT
Found at i:130345430 original size:25 final size:26
Alignment explanation
Indices: 130345401--130345463 Score: 83
Period size: 29 Copynumber: 2.3 Consensus size: 26
130345391 CTGGTCATTT
*
130345401 TGTTAAAAAGGTT-ATCCATTTTTGC
1 TGTTAAAAAAGTTCATCCATTTTTGC
130345426 TGTTAAAAACCAAGTTCATCCATTTTTGC
1 TGTT-AAAA--AAGTTCATCCATTTTTGC
130345455 TGTTAAAAA
1 TGTTAAAAA
130345464 CCAGTCTTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
25 4 0.12
26 5 0.15
28 8 0.24
29 16 0.48
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (26 bp):
TGTTAAAAAAGTTCATCCATTTTTGC
Found at i:130347657 original size:22 final size:21
Alignment explanation
Indices: 130347631--130347704 Score: 58
Period size: 23 Copynumber: 3.3 Consensus size: 21
130347621 TATAAAAAAA
130347631 ATAAAAACTTACAAAAAGGTTC
1 ATAAAAA-TTACAAAAAGGTTC
* ***
130347653 ATAAAAAATTAGCATAAAGACAC
1 AT-AAAAATTA-CAAAAAGGTTC
**
130347676 ATGAAGTATTACAAAAAGGTTC
1 AT-AAAAATTACAAAAAGGTTC
130347698 ATAAAAA
1 ATAAAAA
130347705 AATAAAAGTT
Statistics
Matches: 37, Mismatches: 13, Indels: 5
0.67 0.24 0.09
Matches are distributed among these distances:
21 3 0.08
22 14 0.38
23 20 0.54
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.22
Consensus pattern (21 bp):
ATAAAAATTACAAAAAGGTTC
Found at i:130347761 original size:22 final size:23
Alignment explanation
Indices: 130347731--130347774 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
130347721 GTGCTAAATT
*
130347731 AAAAAAAATGTTAAATT-GACAG
1 AAAAAAAATGCTAAATTAGACAG
*
130347753 AAAATAAATGCTAAATTAGACA
1 AAAAAAAATGCTAAATTAGACA
130347775 TTATATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.59, C:0.07, G:0.11, T:0.23
Consensus pattern (23 bp):
AAAAAAAATGCTAAATTAGACAG
Found at i:130348201 original size:22 final size:22
Alignment explanation
Indices: 130348176--130348219 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
130348166 TCCATATTAT
130348176 TTTTAAATTT-TTTAAATATTTA
1 TTTT-AATTTATTTAAATATTTA
* *
130348198 TTTTATTTTATTTTAATATTTA
1 TTTTAATTTATTTAAATATTTA
130348220 ATAATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTTAATTTATTTAAATATTTA
Found at i:130351699 original size:18 final size:18
Alignment explanation
Indices: 130351676--130351711 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
130351666 TCATTTTTTA
130351676 CAACCTCTGTCACAAAGT
1 CAACCTCTGTCACAAAGT
130351694 CAACCTCTGTCACAAAGT
1 CAACCTCTGTCACAAAGT
130351712 TGCTTTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.11, T:0.22
Consensus pattern (18 bp):
CAACCTCTGTCACAAAGT
Found at i:130352116 original size:58 final size:58
Alignment explanation
Indices: 130352049--130352163 Score: 203
Period size: 58 Copynumber: 2.0 Consensus size: 58
130352039 AAATTGGTCA
*
130352049 TTAAACTTCAAAGCATTCTAGTTACATCCTCAAACTATCGATATTATATCAATAAGGT
1 TTAAACTTCAAAGCATTCTAGTCACATCCTCAAACTATCGATATTATATCAATAAGGT
* *
130352107 TTAAACTTCACAGCATTCTAGTCACATTCTCAAACTATCGATATTATATCAATAAGG
1 TTAAACTTCAAAGCATTCTAGTCACATCCTCAAACTATCGATATTATATCAATAAGG
130352164 CCCTTCCGTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.34
Consensus pattern (58 bp):
TTAAACTTCAAAGCATTCTAGTCACATCCTCAAACTATCGATATTATATCAATAAGGT
Found at i:130363703 original size:22 final size:21
Alignment explanation
Indices: 130363678--130363728 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
130363668 AGGGGATATT
*
130363678 GGGGTAGGGTTTGGGGTTTAAA
1 GGGGTAGGGTTTAGGG-TTAAA
* *
130363700 GGGGAAGGTTTTAGGGTTAAA
1 GGGGTAGGGTTTAGGGTTAAA
130363721 GAGGGTAG
1 G-GGGTAG
130363729 AGAGTAACAG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.24, C:0.00, G:0.49, T:0.27
Consensus pattern (21 bp):
GGGGTAGGGTTTAGGGTTAAA
Found at i:130366604 original size:30 final size:29
Alignment explanation
Indices: 130366563--130366624 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
130366553 GCGAAAACAG
*
130366563 TAAGTGATTTAATTT-ATTAATAATAAAATA
1 TAAGCGATTTAATTTGATT-ATAA-AAAATA
*
130366593 TAAGCGATTTAATTTGATTATAAAATATA
1 TAAGCGATTTAATTTGATTATAAAAAATA
130366622 TAA
1 TAA
130366625 TAAAAAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 8 0.28
30 18 0.62
31 3 0.10
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (29 bp):
TAAGCGATTTAATTTGATTATAAAAAATA
Found at i:130369211 original size:30 final size:30
Alignment explanation
Indices: 130369174--130369235 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
130369164 AATTCAATTC
* * *
130369174 TTTTTTAAAGATTGATGGTCAAATTTGACTA
1 TTTTTAAAAG-TTGAAGGTCAAATTTAACTA
130369205 TTTTTAAAATGTTGAAGGTCAAATTTAACTA
1 TTTTTAAAA-GTTGAAGGTCAAATTTAACTA
130369236 AAAAAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.15, T:0.44
Consensus pattern (30 bp):
TTTTTAAAAGTTGAAGGTCAAATTTAACTA
Found at i:130372849 original size:9 final size:9
Alignment explanation
Indices: 130372824--130372854 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
130372814 ACTCTGTGAA
130372824 AAATAAAAT
1 AAATAAAAT
130372833 AGAATAAAAT
1 A-AATAAAAT
130372843 AAATAAAAT
1 AAATAAAAT
130372852 AAA
1 AAA
130372855 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:130377302 original size:9 final size:9
Alignment explanation
Indices: 130377277--130377307 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
130377267 AATTTGTGAA
130377277 AAATAAAAT
1 AAATAAAAT
130377286 AGAATAAAAT
1 A-AATAAAAT
130377296 AAATAAAAT
1 AAATAAAAT
130377305 AAA
1 AAA
130377308 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:130379195 original size:127 final size:126
Alignment explanation
Indices: 130378830--130379296 Score: 623
Period size: 127 Copynumber: 3.6 Consensus size: 126
130378820 TTTTGAATTG
* * * *
130378830 ATTTGAATTTTTATTGATTCAGGGTTGCAGGTTTAGTTTAGATTTA-GTTTTTGAGACGAACAAT
1 ATTTGAATTTTTATTGATTCAGTGTTGCTGGTTAAGTTTAGATTTAGGTTTTTGAGATGAACAAT
* * * * * * *
130378894 ATGATTTTTGAGCTTTTTTTTTTTTTTAGTTTTTGCTAGTATTGAGTCTGTGATTTCTATGTACT
66 GTGATTTTTGAGC-----TTTTTTTGTCGTTTTTGCTAGCATTGACTTTGAGATTTCTATGTACT
130378959 A
126 A
* * * *
130378960 TTTTTGAATTTTTATTTATTCAGTGTTGTTGGTTTAAGTTTAGATTTAGTTTTTTGAG-TCGAAC
1 -ATTTGAATTTTTATTGATTCAGTGTTGCTGG-TTAAGTTTAGATTTAGGTTTTTGAGAT-GAAC
* * *
130379024 AATGTGATTTTTGAGCCTTCTTTTGTCGTTTTTGTTAGCATTGACTTTGAGATTTCTATGCACTA
63 AATGTGATTTTTGAG-CTTTTTTTGTCGTTTTTGCTAGCATTGACTTTGAGATTTCTATGTACTA
* * **
130379089 ATTTGAATTTTTATTGATTCTGTGTTGCTGATTAAGTTTAGATTTATTTTTTTCGAGATGAACAA
1 ATTTGAATTTTTATTGATTCAGTGTTGCTGGTTAAGTTTAGATTTAGGTTTTT-GAGATGAACAA
130379154 TGTGATTTTTGAGCTTTTTTTGTCGTTTTTGCTAGCATTGACTTTGAGATTTCTATGTACTA
65 TGTGATTTTTGAGCTTTTTTTGTCGTTTTTGCTAGCATTGACTTTGAGATTTCTATGTACTA
*
130379216 ATTTGAATTTTTATTGATTCAGTGTTGCTGGTTAAGTTTAGATTTAGGTTTTTGAGTTGAACAAT
1 ATTTGAATTTTTATTGATTCAGTGTTGCTGGTTAAGTTTAGATTTAGGTTTTTGAGATGAACAAT
130379281 GTGATTTTTGAGCTTT
66 GTGATTTTTGAGCTTT
130379297 CTTTCTTTCT
Statistics
Matches: 298, Mismatches: 32, Indels: 17
0.86 0.09 0.05
Matches are distributed among these distances:
126 27 0.09
127 116 0.39
128 48 0.16
129 40 0.13
131 26 0.09
132 14 0.05
133 26 0.09
134 1 0.00
ACGTcount: A:0.21, C:0.08, G:0.19, T:0.52
Consensus pattern (126 bp):
ATTTGAATTTTTATTGATTCAGTGTTGCTGGTTAAGTTTAGATTTAGGTTTTTGAGATGAACAAT
GTGATTTTTGAGCTTTTTTTGTCGTTTTTGCTAGCATTGACTTTGAGATTTCTATGTACTA
Found at i:130379284 original size:254 final size:255
Alignment explanation
Indices: 130378830--130379300 Score: 687
Period size: 254 Copynumber: 1.8 Consensus size: 255
130378820 TTTTGAATTG
* *
130378830 ATTTGAATTTTTATTGATTCAGGGTTGCAGGTTTAGTTTAGATTTAGTTTTTGAGACGAACAATA
1 ATTTGAATTTTTATTGATTCAGGGTTGCAGATTAAGTTTAGATTTAGTTTTTGAGACGAACAATA
* * * *
130378895 TGATTTTTGAGCTTTTTTTTTTTTTTAGTTTTTGCTAGTATTGAGTCTGTGATTTCTATGTACTA
66 TGATTTTTGAGC----TTTTTTTTGTAGTTTTTGCTAGCATTGACTCTGAGATTTCTATGTACTA
* * * *
130378960 TTTTTGAATTTTTATTTATTCAGTGTTGTTGGTTTAAGTTTAGATTTAGTTTTTTGAGTCGAACA
127 TATTTGAATTTTTATTGATTCAGTGTTGCTGGTTTAAGTTTAGATTTAGGTTTTTGAGTCGAACA
130379025 ATGTGATTTTTGAGCCTTCTTTTGTCGTTTTTGTTAGCATTGACTTTGAGATTTCTATGCACTA
192 ATGTGATTTTTGAGCCTTCTTTTGTCGTTTTTGTTAGCATTGACTTTGAGATTTCTATGCACTA
* * * * *
130379089 ATTTGAATTTTTATTGATTCTGTGTTGCTGATTAAGTTTAGATTTATTTTTTTCGAGATGAACAA
1 ATTTGAATTTTTATTGATTCAGGGTTGCAGATTAAGTTTAGATTTA-GTTTTT-GAGACGAACAA
* * *
130379154 TGTGATTTTTGAGC-TTTTTTTGTCGTTTTTGCTAGCATTGACTTTGAGATTTCTATGTACTA-A
64 TATGATTTTTGAGCTTTTTTTTGTAGTTTTTGCTAGCATTGACTCTGAGATTTCTATGTACTATA
*
130379217 TTTGAATTTTTATTGATTCAGTGTTGCTGG-TTAAGTTTAGATTTAGGTTTTTGAGTTGAACAAT
129 TTTGAATTTTTATTGATTCAGTGTTGCTGGTTTAAGTTTAGATTTAGGTTTTTGAGTCGAACAAT
*
130379281 GTGATTTTTGAGCTTTCTTT
194 GTGATTTTTGAGCCTTCTTT
130379301 CTTTCTTTCT
Statistics
Matches: 190, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
254 51 0.27
255 28 0.15
256 42 0.22
259 41 0.22
260 5 0.03
261 23 0.12
ACGTcount: A:0.21, C:0.08, G:0.19, T:0.52
Consensus pattern (255 bp):
ATTTGAATTTTTATTGATTCAGGGTTGCAGATTAAGTTTAGATTTAGTTTTTGAGACGAACAATA
TGATTTTTGAGCTTTTTTTTGTAGTTTTTGCTAGCATTGACTCTGAGATTTCTATGTACTATATT
TGAATTTTTATTGATTCAGTGTTGCTGGTTTAAGTTTAGATTTAGGTTTTTGAGTCGAACAATGT
GATTTTTGAGCCTTCTTTTGTCGTTTTTGTTAGCATTGACTTTGAGATTTCTATGCACTA
Found at i:130384788 original size:16 final size:15
Alignment explanation
Indices: 130384767--130384818 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
130384757 ATTTTATGAG
130384767 ATCTAAACTAAAAATA
1 ATCTAAACT-AAAATA
*
130384783 ATCTAAAATCAAAATA
1 ATCTAAACT-AAAATA
*
130384799 ATTTAAAC--AAATA
1 ATCTAAACTAAAATA
130384812 ATCTAAA
1 ATCTAAA
130384819 ATTAATATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 11 0.35
16 20 0.65
ACGTcount: A:0.62, C:0.12, G:0.00, T:0.27
Consensus pattern (15 bp):
ATCTAAACTAAAATA
Found at i:130399727 original size:29 final size:28
Alignment explanation
Indices: 130399643--130399727 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 28
130399633 TCTTAGCAAT
**
130399643 TGGACCTAAATTTTAAAATTTGAAAAGTGGA
1 TGGA-CTAAATTTT-AAATTT-AAAAGTACA
* * **
130399674 GGGACTAAATTCCTAAAAATAAAAGTACA
1 TGGACTAAATT-TTAAATTTAAAAGTACA
130399703 TGGACTAAATTTTAAATTTACAAAG
1 TGGACTAAATTTTAAATTTA-AAAG
130399728 AGTATAATGA
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
28 6 0.14
29 21 0.50
30 11 0.26
31 4 0.10
ACGTcount: A:0.46, C:0.09, G:0.15, T:0.29
Consensus pattern (28 bp):
TGGACTAAATTTTAAATTTAAAAGTACA
Found at i:130404341 original size:26 final size:26
Alignment explanation
Indices: 130404275--130404345 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 26
130404265 TGTCACGTCA
130404275 ATAAATAATTTAAAAATTATAAAATATTC
1 ATAAA-AATTTAAAAA--ATAAAATATTC
*
130404304 A-AAAAA-AT-AAAAATACAAAT-TTC
1 ATAAAAATTTAAAAAATA-AAATATTC
130404327 ATAAAAATTTAAAAAATAA
1 ATAAAAATTTAAAAAATAA
130404346 CATAAAATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
23 7 0.19
24 9 0.25
25 6 0.17
26 8 0.22
27 2 0.06
28 3 0.08
29 1 0.03
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (26 bp):
ATAAAAATTTAAAAAATAAAATATTC
Found at i:130410343 original size:30 final size:30
Alignment explanation
Indices: 130410309--130410366 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
130410299 AGGTTACTGA
*
130410309 TTAATTGCATAAGATCTCCTTAATTTATGG
1 TTAATTCCATAAGATCTCCTTAATTTATGG
*
130410339 TTAATTCCATAAGATCTCTTTAATTTAT
1 TTAATTCCATAAGATCTCCTTAATTTAT
130410367 AATTTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.47
Consensus pattern (30 bp):
TTAATTCCATAAGATCTCCTTAATTTATGG
Found at i:130416501 original size:21 final size:19
Alignment explanation
Indices: 130416470--130416511 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
130416460 CGGCAAAGTG
130416470 ATTAAATATTAATAA-AAAA
1 ATTAAATATTAA-AATAAAA
130416489 ATTAGAATGATTAAAATAAAA
1 ATTA-AAT-ATTAAAATAAAA
130416510 AT
1 AT
130416512 GACATTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.20
20 5 0.25
21 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
ATTAAATATTAAAATAAAA
Found at i:130417167 original size:10 final size:10
Alignment explanation
Indices: 130417152--130417180 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
130417142 TTAATGATTA
130417152 TTTTATAATT
1 TTTTATAATT
130417162 TTTTATAA-T
1 TTTTATAATT
130417171 TTTTATAATT
1 TTTTATAATT
130417181 AAATAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATAATT
Found at i:130417262 original size:232 final size:225
Alignment explanation
Indices: 130416863--130417321 Score: 753
Period size: 232 Copynumber: 2.0 Consensus size: 225
130416853 TGTTATTAAA
130416863 TTATCTTTCTGCTAATAACTTAATTATTGGCGACTAAAAAAGAAAAATTTAAATAATTTAATGAT
1 TTATCTTTCTGCTAATAACTTAATTATTGGCGACT-AAAAAGAAAAATTTAAATAATTTAATGAT
* * *
130416928 TATTTTATAATTTTTTATAATTAAATAAAAAAATATTAACAGTTGAATAAGTACTAATATAATTT
65 TATTTTATAATTTTTTATAATTAAATAAAAAAATACTAACAGTTGAATAAATACTAATAAAATTT
130416993 ATCCTAAAATAAGATCAAGTATAATTTAAGTATCAATATATAAATTTACTCAAATTAATCCAAT-
130 ATCCTAAAATAAGATCAAGTATAATTTAAGTATCAATATATAAATTTACTCAAATTAATCCAATC
130417057 CCCCAATTATATAATTGTGGGCCAAGGGGAG
195 CCCCAATTATATAATTGTGGGCCAAGGGGAG
130417088 TTATCTTTCTGCTAATAACTTAATTATTGGCGACT-AAAA-AAAAATTTAAATAATTTAATGATT
1 TTATCTTTCTGCTAATAACTTAATTATTGGCGACTAAAAAGAAAAATTTAAATAATTTAATGATT
130417151 ATTTTATAATTTTTTATAATTTTTATAATTAAATAAAAAAAATACTAACAGTTGAATAAATACTA
66 ATTTTAT-A------AT--TTTTTATAATTAAAT-AAAAAAATACTAACAGTTGAATAAATACTA
*
130417216 ATAAAATTTATCCTAAAATAAGATCGAGTATAATTTAAGTATCAATATATAAATTTACTCAAATT
121 ATAAAATTTATCCTAAAATAAGATCAAGTATAATTTAAGTATCAATATATAAATTTACTCAAATT
*
130417281 AATCCAATCCCCCGATTATATAATTGTGGGCCAAGGGGAG
186 AATCCAATCCCCCAATTATATAATTGTGGGCCAAGGGGAG
130417321 T
1 T
130417322 AAAACCCAAA
Statistics
Matches: 218, Mismatches: 5, Indels: 14
0.92 0.02 0.06
Matches are distributed among these distances:
222 31 0.14
223 5 0.02
225 35 0.16
229 2 0.01
231 15 0.07
232 99 0.45
233 31 0.14
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.37
Consensus pattern (225 bp):
TTATCTTTCTGCTAATAACTTAATTATTGGCGACTAAAAAGAAAAATTTAAATAATTTAATGATT
ATTTTATAATTTTTTATAATTAAATAAAAAAATACTAACAGTTGAATAAATACTAATAAAATTTA
TCCTAAAATAAGATCAAGTATAATTTAAGTATCAATATATAAATTTACTCAAATTAATCCAATCC
CCCAATTATATAATTGTGGGCCAAGGGGAG
Found at i:130421009 original size:89 final size:89
Alignment explanation
Indices: 130420858--130421037 Score: 342
Period size: 89 Copynumber: 2.0 Consensus size: 89
130420848 GGTTTAGGTG
130420858 TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
1 TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
*
130420923 ATATGAGAGTATGTCCGACGTGGA
66 ATATGAGAGTATGTCCGACGCGGA
*
130420947 TAAGGATCCGGATTTAGGTATGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
1 TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
130421012 ATATGAGAGTATGTCCGACGCGGA
66 ATATGAGAGTATGTCCGACGCGGA
130421036 TA
1 TA
130421038 TTGGATGCAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35
Consensus pattern (89 bp):
TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
ATATGAGAGTATGTCCGACGCGGA
Found at i:130425535 original size:31 final size:31
Alignment explanation
Indices: 130425494--130425582 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 31
130425484 TTAATATAAC
* *
130425494 ATTTGGTACCTGAATTTAGT-TTTAGTGTTCA
1 ATTTGGTACCTGAATTT-GTCTTTAATATTCA
* **
130425525 ATTTGATACCTGTGTTTGTCTTTAATATTCA
1 ATTTGGTACCTGAATTTGTCTTTAATATTCA
* * *
130425556 ATTTGGTACCTGAGTTTGGCTTCAATA
1 ATTTGGTACCTGAATTTGTCTTTAATA
130425583 ATACCCAATA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
30 2 0.04
31 46 0.96
ACGTcount: A:0.22, C:0.12, G:0.18, T:0.47
Consensus pattern (31 bp):
ATTTGGTACCTGAATTTGTCTTTAATATTCA
Found at i:130426662 original size:22 final size:22
Alignment explanation
Indices: 130426647--130426691 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
130426637 AAATCTGAGT
*
130426647 TATTGAGAAGGAAAATATACTA
1 TATTGAGAAAGAAAATATACTA
*
130426669 TATTGAGAAAGAAAATAAACTA
1 TATTGAGAAAGAAAATATACTA
130426691 T
1 T
130426692 CTTAGACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.53, C:0.04, G:0.16, T:0.27
Consensus pattern (22 bp):
TATTGAGAAAGAAAATATACTA
Found at i:130429316 original size:26 final size:26
Alignment explanation
Indices: 130429277--130429334 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
130429267 TTCCCACTTC
* *
130429277 ACCAAATATCCTCT-TAATATTCTCT
1 ACCAAATATCCTCTGGAAGATTCTCT
*
130429302 ACCAAATGATCCTCTGGAAGATTTTCT
1 ACCAAAT-ATCCTCTGGAAGATTCTCT
130429329 ACCAAA
1 ACCAAA
130429335 ACGGTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 7 0.25
26 7 0.25
27 14 0.50
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (26 bp):
ACCAAATATCCTCTGGAAGATTCTCT
Found at i:130441079 original size:4 final size:4
Alignment explanation
Indices: 130441066--130441098 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
130441056 ATAAACAAAC
*
130441066 TACA TGCA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA T
130441099 CAATGAAGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:130442309 original size:15 final size:16
Alignment explanation
Indices: 130442280--130442309 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
130442270 ACTCAAATTT
130442280 AATTTAAATAATAAAA
1 AATTTAAATAATAAAA
130442296 AATTTAAA-AATAAA
1 AATTTAAATAATAAA
130442310 TTTAATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATTTAAATAATAAAA
Found at i:130454729 original size:31 final size:30
Alignment explanation
Indices: 130454694--130454753 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
130454684 AAAAGCTTAA
*
130454694 TTAATGAGAATTTCCAAAAATTTTAAAGAGT
1 TTAATGAAAATTT-CAAAAATTTTAAAGAGT
* * *
130454725 TTAATTAAAATTTTAAAACTTTTAAAGAG
1 TTAATGAAAATTTCAAAAATTTTAAAGAG
130454754 CCTAATTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (30 bp):
TTAATGAAAATTTCAAAAATTTTAAAGAGT
Found at i:130454750 original size:30 final size:30
Alignment explanation
Indices: 130454709--130454808 Score: 103
Period size: 30 Copynumber: 3.3 Consensus size: 30
130454699 GAGAATTTCC
**
130454709 AAAAATTTTAAAGAGTTTAATTAAAATTTT
1 AAAAATTTTAAAGAGCCTAATTAAAATTTT
* *
130454739 AAAACTTTTAAAGAGCCTAATTAAAATCTCT
1 AAAAATTTTAAAGAGCCTAATTAAAAT-TTT
* * *
130454770 AAAAACTTT-GAGGGACCTAATTAAAATTTT
1 AAAAATTTTAAAGAG-CCTAATTAAAATTTT
*
130454800 AAAATTTTT
1 AAAAATTTT
130454809 GACGAGCATA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
30 36 0.63
31 21 0.37
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (30 bp):
AAAAATTTTAAAGAGCCTAATTAAAATTTT
Found at i:130457010 original size:3 final size:3
Alignment explanation
Indices: 130456997--130457056 Score: 111
Period size: 3 Copynumber: 19.7 Consensus size: 3
130456987 ATTAATTAAG
130456997 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
130457043 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
130457057 TATGCAAAAT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 53 0.95
4 3 0.05
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:130462914 original size:12 final size:12
Alignment explanation
Indices: 130462899--130462935 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
130462889 GACAAAAATT
130462899 TTAAATATTAAA
1 TTAAATATTAAA
130462911 TTAAATATTAAAA
1 TTAAATATT-AAA
130462924 TTAAAT-TTAAA
1 TTAAATATTAAA
130462935 T
1 T
130462936 AACATTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 4 0.17
12 11 0.46
13 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TTAAATATTAAA
Found at i:130462921 original size:19 final size:19
Alignment explanation
Indices: 130462894--130462936 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
130462884 ATTGAGACAA
*
130462894 AAATTTTAAATATTAAA-TT
1 AAATATTAAA-ATTAAATTT
130462913 AAATATTAAAATTAAATTT
1 AAATATTAAAATTAAATTT
130462932 AAATA
1 AAATA
130462937 ACATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AAATATTAAAATTAAATTT
Found at i:130467579 original size:47 final size:47
Alignment explanation
Indices: 130467515--130467625 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
130467505 GACATTGAGT
*
130467515 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
130467562 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
130467609 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
130467626 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:130469247 original size:19 final size:21
Alignment explanation
Indices: 130469225--130469267 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
130469215 CTTTCTTGTA
130469225 TTATTATT-TTTA-GCATATT
1 TTATTATTATTTAGGCATATT
*
130469244 TTATTATTATTTAGGCATTTT
1 TTATTATTATTTAGGCATATT
130469265 TTA
1 TTA
130469268 GATTAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.38
20 4 0.19
21 9 0.43
ACGTcount: A:0.26, C:0.05, G:0.07, T:0.63
Consensus pattern (21 bp):
TTATTATTATTTAGGCATATT
Found at i:130470304 original size:22 final size:23
Alignment explanation
Indices: 130470255--130470307 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
130470245 TGTATGCGCT
130470255 TTTATATTATTATTATCGCCATC
1 TTTATATTATTATTATCGCCATC
* *
130470278 ATTATCATT-TTATT-TCTCCATC
1 TTTAT-ATTATTATTATCGCCATC
130470300 TTTATATT
1 TTTATATT
130470308 CATTTATTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.12
22 11 0.42
23 9 0.35
24 3 0.12
ACGTcount: A:0.25, C:0.17, G:0.02, T:0.57
Consensus pattern (23 bp):
TTTATATTATTATTATCGCCATC
Found at i:130471454 original size:2 final size:2
Alignment explanation
Indices: 130471447--130471476 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
130471437 TCAAACTTGA
130471447 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
130471477 TTTTTGTCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:130471936 original size:2 final size:2
Alignment explanation
Indices: 130471929--130471965 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
130471919 AAAATATGAT
130471929 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
130471966 GATAACATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Done.