Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 426 of 433
Found at i:130816989 original size:3 final size:3
Alignment explanation
Indices: 130816981--130817012 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
130816971 GCACAATATT
130816981 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
130817013 GTTCTAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:130830850 original size:15 final size:16
Alignment explanation
Indices: 130830833--130830884 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 16
130830823 AAAATACATT
130830833 AAAAATATTTATATTA
1 AAAAATATTTATATTA
130830849 AAAAATACTATTATAAATATA
1 AAAAATA-T-TTAT--AT-TA
130830870 AAAAATATTTATATT
1 AAAAATATTTATATT
130830885 TTTACACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 8 0.26
17 3 0.10
18 4 0.13
19 4 0.13
20 3 0.10
21 9 0.29
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
AAAAATATTTATATTA
Found at i:130830861 original size:28 final size:26
Alignment explanation
Indices: 130830817--130830868 Score: 77
Period size: 28 Copynumber: 1.9 Consensus size: 26
130830807 ATTTTTTAAC
130830817 ATATTAAAAATACATTAAAAATATTT
1 ATATTAAAAATACATTAAAAATATTT
*
130830843 ATATTAAAAAATACTATTATAAATAT
1 ATATT-AAAAATAC-ATTAAAAATAT
130830869 AAAAAATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 5 0.22
27 8 0.35
28 10 0.43
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (26 bp):
ATATTAAAAATACATTAAAAATATTT
Found at i:130834164 original size:40 final size:40
Alignment explanation
Indices: 130834109--130834185 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
130834099 AAGTGAAAAA
* *
130834109 TAAAAACTAAATAAATAAATAA-CTATCATAAAAATTTGAG
1 TAAAAAATAAATAAATAAA-AAGATATCATAAAAATTTGAG
130834149 TAAAAAATAAATAAATAAAAAGATATCATAAAAATTT
1 TAAAAAATAAATAAATAAAAAGATATCATAAAAATTT
130834186 TAAATCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.06
40 32 0.94
ACGTcount: A:0.64, C:0.05, G:0.04, T:0.27
Consensus pattern (40 bp):
TAAAAAATAAATAAATAAAAAGATATCATAAAAATTTGAG
Found at i:130834196 original size:40 final size:39
Alignment explanation
Indices: 130834106--130834197 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
130834096 CTAAAGTGAA
*
130834106 AAATAAAAACTAAATAAATAAATAACTATCATAAAAATTTG
1 AAAT-AAAA-TAAATAAATAAATAAATATCATAAAAATTTG
*
130834147 AGTAA-AAAATAAATAAATAAA-AAGATATCATAAAAATTTT
1 A--AATAAAATAAATAAATAAATAA-ATATCATAAAAATTTG
130834187 AAATCAAAATA
1 AAAT-AAAATA
130834198 CCTAATTCTA
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
38 2 0.05
39 2 0.05
40 33 0.75
41 5 0.11
43 2 0.05
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.26
Consensus pattern (39 bp):
AAATAAAATAAATAAATAAATAAATATCATAAAAATTTG
Found at i:130840172 original size:22 final size:23
Alignment explanation
Indices: 130840146--130840198 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 23
130840136 ATATATATAC
130840146 ATATA-ATATAGT-TATTAAGAAA
1 ATATATATATA-TATATTAAGAAA
*
130840168 ATATATATATATAATATTAAGAAT
1 ATATATATATAT-ATATTAAGAAA
130840192 ATATATA
1 ATATATA
130840199 CAATACATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 6 0.22
23 5 0.19
24 16 0.59
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.40
Consensus pattern (23 bp):
ATATATATATATATATTAAGAAA
Found at i:130840208 original size:24 final size:24
Alignment explanation
Indices: 130840158--130840208 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
130840148 ATAATATAGT
*
130840158 TATTAAGAAAATATATATATATAA
1 TATTAAGAAAATATATACATATAA
*
130840182 TATTAAGAATATATATACA-ATACA
1 TATTAAGAAAATATATACATATA-A
130840206 TAT
1 TAT
130840209 GGTATTAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.37
Consensus pattern (24 bp):
TATTAAGAAAATATATACATATAA
Found at i:130840249 original size:50 final size:54
Alignment explanation
Indices: 130840135--130840255 Score: 148
Period size: 54 Copynumber: 2.3 Consensus size: 54
130840125 ACGTACATAC
* *
130840135 TATATATATACATATAATATAGTTATTAAGAAAATATATATATATAATATTAAGA
1 TATATATATACATATAATATAGGTATTAAGAAAATATATATATATAATA-TAACA
130840190 -ATATATATACA-ATACATAT-GGTATTAAG-AAATATAGTAT-TATAA-A-AACA
1 TATATATATACATATA-ATATAGGTATTAAGAAAATATA-TATATATAATATAACA
130840239 TATATATATACATATAA
1 TATATATATACATATAA
130840256 GTAATATTTT
Statistics
Matches: 60, Mismatches: 2, Indels: 13
0.80 0.03 0.17
Matches are distributed among these distances:
49 3 0.05
50 12 0.20
51 4 0.07
52 12 0.20
53 14 0.23
54 15 0.25
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.37
Consensus pattern (54 bp):
TATATATATACATATAATATAGGTATTAAGAAAATATATATATATAATATAACA
Found at i:130840289 original size:15 final size:15
Alignment explanation
Indices: 130840269--130840326 Score: 61
Period size: 15 Copynumber: 4.1 Consensus size: 15
130840259 ATATTTTATA
*
130840269 AGTAATACTAATAAT
1 AGTAATAGTAATAAT
130840284 AGTAATAGTAA-AAT
1 AGTAATAGTAATAAT
*
130840298 ATTAATA--AATAAT
1 AGTAATAGTAATAAT
130840311 AG-ATATAGTAATAAT
1 AGTA-ATAGTAATAAT
130840326 A
1 A
130840327 AAAGCGTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 3 0.08
13 7 0.19
14 9 0.25
15 17 0.47
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.33
Consensus pattern (15 bp):
AGTAATAGTAATAAT
Found at i:130840755 original size:18 final size:18
Alignment explanation
Indices: 130840732--130840770 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
130840722 ACTAGTACTA
*
130840732 ATAATATTAATAATAAAT
1 ATAATAATAATAATAAAT
130840750 ATAATAATAATAATAAAT
1 ATAATAATAATAATAAAT
130840768 ATA
1 ATA
130840771 TGCATATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAATAATAATAATAAAT
Found at i:130845123 original size:18 final size:17
Alignment explanation
Indices: 130845088--130845120 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
130845078 CTTTTTATTC
130845088 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
130845105 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
130845121 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:130845618 original size:24 final size:24
Alignment explanation
Indices: 130845554--130845619 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
130845544 TATCCATTAA
* *
130845554 ATAATCATAA-TAATTATAAAACC
1 ATAATAATAATTAAATATAAAACC
** *
130845577 ATAATAATAATTTTATATAAAATC
1 ATAATAATAATTAAATATAAAACC
*
130845601 ATGATAATAATTAAATATA
1 ATAATAATAATTAAATATA
130845620 TATAATACAT
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
23 9 0.26
24 25 0.74
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATAATAATTAAATATAAAACC
Found at i:130848528 original size:29 final size:27
Alignment explanation
Indices: 130848496--130848560 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
130848486 TAAAAATTCA
*
130848496 AAAAAATATAAAAACTATTTTTGAAAATT
1 AAAAAATATAAAAACTA-TTATG-AAATT
* *
130848525 -AAAAATCATTAAAATTATTATGAAATT
1 AAAAAAT-ATAAAAACTATTATGAAATT
130848552 AAAAAATAT
1 AAAAAATAT
130848561 TTTTATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
27 7 0.23
28 16 0.52
29 8 0.26
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (27 bp):
AAAAAATATAAAAACTATTATGAAATT
Found at i:130856462 original size:17 final size:17
Alignment explanation
Indices: 130856414--130856462 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
130856404 TATTATGTTG
*
130856414 TTATT-ATTTTGATGTTA
1 TTATTAATTTTG-TTTTA
*
130856431 TTATATAACTTTGTTTTA
1 TTAT-TAATTTTGTTTTA
130856449 TTATTAATTTTGTT
1 TTATTAATTTTGTT
130856463 ACTATTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 13 0.48
18 9 0.33
19 5 0.19
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.65
Consensus pattern (17 bp):
TTATTAATTTTGTTTTA
Found at i:130859101 original size:32 final size:31
Alignment explanation
Indices: 130859025--130859099 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 31
130859015 AAATAAATGC
130859025 TAAATAAGTAAAA-AAAAATTATCATAAAAATT
1 TAAATAA--AAAATAAAAATTATCATAAAAATT
*
130859057 TAAGTAAAAAATAAAAATATATCATAAAAATTT
1 TAAATAAAAAATAAAAAT-TATCATAAAAA-TT
*
130859090 TAAATCAAAA
1 TAAATAAAAA
130859100 TACCTATTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
30 4 0.11
31 6 0.16
32 17 0.46
33 10 0.27
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (31 bp):
TAAATAAAAAATAAAAATTATCATAAAAATT
Found at i:130864233 original size:30 final size:30
Alignment explanation
Indices: 130864197--130864253 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
130864187 ACTTAACAAG
130864197 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
130864227 CAAATGTCTTTAAAATAATAACAAAAT
1 CAAATGTCTCTAAAATAATAACAAAAT
130864254 CGACAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:130864355 original size:11 final size:11
Alignment explanation
Indices: 130864297--130864366 Score: 50
Period size: 11 Copynumber: 6.4 Consensus size: 11
130864287 CAATAACAAC
**
130864297 AAAATAATAGC
1 AAAATAATAAT
*
130864308 AACATAATAAT
1 AAAATAATAAT
** *
130864319 AAAATGGTAGT
1 AAAATAATAAT
** *
130864330 AAAATAAGGAG
1 AAAATAATAAT
130864341 AAAATAATAAT
1 AAAATAATAAT
*
130864352 AAAATAATATT
1 AAAATAATAAT
130864363 AAAA
1 AAAA
130864367 AAAATCAATT
Statistics
Matches: 42, Mismatches: 17, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
11 42 1.00
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.23
Consensus pattern (11 bp):
AAAATAATAAT
Found at i:130869900 original size:29 final size:29
Alignment explanation
Indices: 130869858--130869913 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
130869848 AGGAATTAGG
130869858 CTTGTCCATAATAGTTAAATCCGAATAGA
1 CTTGTCCATAATAGTTAAATCCGAATAGA
*
130869887 CTTGTCCATAATAGTTAAATCTGAATA
1 CTTGTCCATAATAGTTAAATCCGAATA
130869914 CTCATTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (29 bp):
CTTGTCCATAATAGTTAAATCCGAATAGA
Found at i:130870101 original size:15 final size:16
Alignment explanation
Indices: 130870070--130870103 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
130870060 CCATTGCTTG
*
130870070 AGTATCGATACCTAAA
1 AGTATCGATAACTAAA
130870086 AGTATCGA-AACTAAA
1 AGTATCGATAACTAAA
130870101 AGT
1 AGT
130870104 TTTAATACGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.47, C:0.15, G:0.15, T:0.24
Consensus pattern (16 bp):
AGTATCGATAACTAAA
Found at i:130871590 original size:2 final size:2
Alignment explanation
Indices: 130871583--130871607 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
130871573 ATAAATTTTA
130871583 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
130871608 CTTAAATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:130871685 original size:30 final size:30
Alignment explanation
Indices: 130871650--130871711 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
130871640 AATGAAATGT
* *
130871650 AAATGTCTTTAAAATGATAACAAAATTAAC
1 AAATGTCTTTAAAATAATAACAAAATCAAC
130871680 AAATGTCTTTAAAATAATAACAAAATCAAC
1 AAATGTCTTTAAAATAATAACAAAATCAAC
130871710 AA
1 AA
130871712 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.11, G:0.05, T:0.27
Consensus pattern (30 bp):
AAATGTCTTTAAAATAATAACAAAATCAAC
Found at i:130883051 original size:19 final size:19
Alignment explanation
Indices: 130883014--130883051 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
130883004 ACCTATATAC
*
130883014 AAGTTGGTATGGCTAATAT
1 AAGTTGGTATGGATAATAT
*
130883033 AAGTTGGTATGGATGATAT
1 AAGTTGGTATGGATAATAT
130883052 CTTAAGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.29, T:0.37
Consensus pattern (19 bp):
AAGTTGGTATGGATAATAT
Found at i:130883719 original size:4 final size:4
Alignment explanation
Indices: 130883712--130883739 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
130883702 TGCATGCAGG
130883712 CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
130883740 AAAAAACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:130886739 original size:13 final size:13
Alignment explanation
Indices: 130886723--130886749 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
130886713 TCAACATGCA
130886723 AGTTCAATTTGCG
1 AGTTCAATTTGCG
130886736 AGTTCAATTTGCG
1 AGTTCAATTTGCG
130886749 A
1 A
130886750 ACCGTGTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (13 bp):
AGTTCAATTTGCG
Found at i:130890239 original size:104 final size:102
Alignment explanation
Indices: 130890006--130890699 Score: 550
Period size: 104 Copynumber: 6.6 Consensus size: 102
130889996 ACTGAGTAAC
* * *
130890006 TATCCATGATTCAGGTTTTATGAACCAAACTATAAG-T-AAACGAAATCATCAACTACTATACCT
1 TATCCATGATTCAGGTTTTACGAACCAAACTAT-AGTTCAAATGAAATCATCAACTACTATACCA
* * ** * ** ** **
130890069 ATACTGTAATTTGAGTTAATAGGAGAAAAGTTACCAAGCAAAA
65 ATACTATAATTT-CG--AAT--GCCAAAATTTAATAATTAATG
*
130890112 TAACCATGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAA
1 TATCCATGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAA
* *
130890177 TGCTATAAATTTCGACATGCCAAAATTTAATAATTCATG
66 TACTAT-AATTTCGA-ATGCCAAAATTTAATAATTAATG
* * ** *
130890216 TATCCATGATTCAGGTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTAAACCAA
1 TATCCATGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAA
* * ** * * * ** **
130890281 TACTGTAATTAGCGTAATAGGAGGAAAAGTTACTGAGAAAAA
66 TACTATAATT-TCG-AAT--G-CCAAAATTTAATAATTAATG
* *
130890323 TATCCATGATTGAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTACACCAA
1 TATCCATGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAA
* * **
130890388 TACTATGAATTTCAACATGCCAAAATTTAATGATTTGTG
66 TACTAT-AATTTCGA-ATGCCAAAATTTAATAATTAATG
* ** * ** * *
130890427 TATCCATGATTCAGGTTTTACGAATCAAACTACGGTTGAAACCAAATCATCTACTACTAAACCAA
1 TATCCATGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAA
* * * ** * ** ** **
130890492 TATTGTAGTTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAA
66 TACTATAATTT-CG--AAT--G-CCAAAATTTAATAATTAATG
130890535 TATCCATGA-TCGAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCA
1 TATCCATGATTC-AGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCA
* **
130890599 ATACCATGAATTTCAGAATGCCAAAATTTAATAATTCGTG
65 ATACTAT-AATTTC-GAATGCCAAAATTTAATAATTAATG
* * *
130890639 TATACATTG-TTCAGCTTTTACGAATCAAACTATAGTTCAAATGAAATCATCAACTACTATA
1 TATCCA-TGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATA
130890700 TAGATACTAC
Statistics
Matches: 460, Mismatches: 106, Indels: 46
0.75 0.17 0.08
Matches are distributed among these distances:
103 8 0.02
104 210 0.46
105 12 0.03
106 37 0.08
107 113 0.25
108 75 0.16
109 5 0.01
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (102 bp):
TATCCATGATTCAGGTTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAA
TACTATAATTTCGAATGCCAAAATTTAATAATTAATG
Found at i:130890354 original size:107 final size:108
Alignment explanation
Indices: 130889958--130890602 Score: 613
Period size: 104 Copynumber: 6.1 Consensus size: 108
130889948 ACTATAGTTC
* * * *
130889958 AACCAATACTGTAATTTGCGTTAATAGGAGGAAATGTTACTGAG-TAACTATCCATGATTCAGGT
1 AACCAATACTGTAATTTGCGTTAATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTCAGGT
*
130890022 TTTATGAACCAAACTATAAG-T-AAACGAAATCATCAACTACTA
66 TTTACGAACCAAACTAT-AGTTCAAACGAAATCATCAACTACTA
* * * * * *
130890064 TACCTATACTGTAATTTGAGTTAATAGGA-GAAAAGTTACCAAGCAAAATAACCATGATTCAGGT
1 AACCAATACTGTAATTTGCGTTAATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTCAGGT
*
130890128 TTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTA
66 TTTACGAACCAAACTATAGTTCAAACGAAATCATCAACTACTA
* * * ** * * *** **
130890171 TACCAATGCTATAAATTT-CG--ACAT--G-CCAAAATTTAATAATTCATGTATCCATGATTCAG
1 AACCAATACTGT-AATTTGCGTTA-ATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTCAG
* * *
130890230 GTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTA
64 GTTTTACGAACCAAACTATAGTTCAAACGAAATCATCAACTACTA
* * *
130890275 AACCAATACTGTAATTAGCG-TAATAGGAGGAAAAGTTACTGAGAAAAATATCCATGATTGAGGT
1 AACCAATACTGTAATTTGCGTTAATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTCAGGT
*
130890339 TTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTA
66 TTTACGAACCAAACTATAGTTCAAACGAAATCATCAACTACTA
* * * * ** * * * ******
130890382 CACCAATACTATGAATTT-C---AACATG-CCAAAATTTAATGATTTGTGTATCCATGATTCAGG
1 AACCAATACTGT-AATTTGCGTTAATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTCAGG
* ** * * *
130890442 TTTTACGAATCAAACTACGGTTGAAACCAAATCATCTACTACTA
65 TTTTACGAACCAAACTATAGTTCAAACGAAATCATCAACTACTA
* * *
130890486 AACCAATATTGTAGTTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAATATCCATGA-TCGAGG
1 AACCAATACTGTAATTTGCGTTAATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTC-AGG
*
130890550 TTTTACGAACCAAACTATAGTTCAAATGAAATCATCAACTACTA
65 TTTTACGAACCAAACTATAGTTCAAACGAAATCATCAACTACTA
*
130890594 TACCAATAC
1 AACCAATAC
130890603 CATGAATTTC
Statistics
Matches: 423, Mismatches: 98, Indels: 34
0.76 0.18 0.06
Matches are distributed among these distances:
103 8 0.02
104 149 0.35
105 19 0.04
106 63 0.15
107 111 0.26
108 73 0.17
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (108 bp):
AACCAATACTGTAATTTGCGTTAATAGGAGGAAAAGTTACTAAGAAAAATATCCATGATTCAGGT
TTTACGAACCAAACTATAGTTCAAACGAAATCATCAACTACTA
Found at i:130890369 original size:211 final size:212
Alignment explanation
Indices: 130890006--130890697 Score: 1027
Period size: 211 Copynumber: 3.3 Consensus size: 212
130889996 ACTGAGTAAC
* * * * * *
130890006 TATCCATGATTCAGGTTTTATGAACCAAACTATAAG-T-AAACGAAATCATCAACTACTATACCT
1 TATCCATGATTCAGGTTTTACGAATCAAACTA-CAGTTCAAACCAAATCATCAACTACTAAACCA
* * * *
130890069 ATACTGTAATTTGAGTTAATAGGA-GAAAAGTTACCAAGCAAAATAACCATGATTCAGGTTTTAC
65 ATACTGTAATTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAATATCCATGATTGAGGTTTTAC
* *
130890133 GAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAATGCTATAAATTTCGACATGCC
130 GAACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAATACTATGAATTTCGACATGCC
*
130890198 AAAATTTAATAATTCATG
195 AAAATTTAATAATTCGTG
130890216 TATCCATGATTCAGGTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTAAACCAA
1 TATCCATGATTCAGGTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTAAACCAA
* **
130890281 TACTGTAATTAGCG-TAATAGGAGGAAAAGTTACTGAGAAAAATATCCATGATTGAGGTTTTACG
66 TACTGTAATTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAATATCCATGATTGAGGTTTTACG
* *
130890345 AACCAAACTATAGTTCAAATGAAATCATCAACTACTACACCAATACTATGAATTTCAACATGCCA
131 AACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAATACTATGAATTTCGACATGCCA
* *
130890410 AAATTTAATGATTTGTG
196 AAATTTAATAATTCGTG
* * *
130890427 TATCCATGATTCAGGTTTTACGAATCAAACTACGGTTGAAACCAAATCATCTACTACTAAACCAA
1 TATCCATGATTCAGGTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTAAACCAA
* * *
130890492 TATTGTAGTTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAATATCCATGATCGAGGTTTTACG
66 TACTGTAATTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAATATCCATGATTGAGGTTTTACG
*
130890557 AACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAATACCATGAATTTCAGA-ATGCC
131 AACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAATACTATGAATTTC-GACATGCC
130890621 AAAATTTAATAATTCGTG
195 AAAATTTAATAATTCGTG
* * * **
130890639 TATACATTG-TTCAGCTTTTACGAATCAAACTATAGTTCAAATGAAATCATCAACTACTA
1 TATCCA-TGATTCAGGTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTA
130890698 TATAGATACT
Statistics
Matches: 434, Mismatches: 42, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
209 2 0.00
210 39 0.09
211 220 0.51
212 170 0.39
213 3 0.01
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.29
Consensus pattern (212 bp):
TATCCATGATTCAGGTTTTACGAATCAAACTACAGTTCAAACCAAATCATCAACTACTAAACCAA
TACTGTAATTTGCGTTAATAGGAGGAAAAGTTACCAAGAAAAATATCCATGATTGAGGTTTTACG
AACCAAACTATAGTTCAAATGAAATCATCAACTACTATACCAATACTATGAATTTCGACATGCCA
AAATTTAATAATTCGTG
Found at i:130894198 original size:46 final size:47
Alignment explanation
Indices: 130894098--130894249 Score: 155
Period size: 47 Copynumber: 3.2 Consensus size: 47
130894088 ATAGTAAAAC
* * * * * *
130894098 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGGA-TCACATATCAC--ACTGATGCCATATCCCAGA
*
130894147 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGGATCACATATCACACTGATGCCATATCCCAGA
* * * * *
130894193 TATGGTCTTATACAGTAGCACATATCACACTGATACCATATCCCGGA
1 TATGGTCTTACACAGGATCACATATCACACTGATGCCATATCCCAGA
130894240 TATGGTCTTA
1 TATGGTCTTA
130894250 TATGGAAGCA
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
46 26 0.30
47 39 0.44
48 11 0.12
49 12 0.14
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (47 bp):
TATGGTCTTACACAGGATCACATATCACACTGATGCCATATCCCAGA
Found at i:130894265 original size:47 final size:47
Alignment explanation
Indices: 130894164--130894268 Score: 156
Period size: 47 Copynumber: 2.2 Consensus size: 47
130894154 TTACACGGAT
* *
130894164 CACATATCACACTGATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTGATACCATATCCCAGATATGGTCTTATACAGAAG
* **
130894211 CACATATCACACTGATACCATATCCCGGATATGGTCTTATATGGAAG
1 CACATATCACACTGATACCATATCCCAGATATGGTCTTATACAGAAG
*
130894258 CATATATCACA
1 CACATATCACA
130894269 TTTCTCCGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (47 bp):
CACATATCACACTGATACCATATCCCAGATATGGTCTTATACAGAAG
Found at i:130900548 original size:233 final size:236
Alignment explanation
Indices: 130900068--130900763 Score: 915
Period size: 233 Copynumber: 2.9 Consensus size: 236
130900058 TCATAAACTT
* * * * *
130900068 ATAAATCAGGGCAAATTATCAAACGCAATATAGCTAGTTTAATTAGAAAATTCAATAATCTTAAA
1 ATAAATCAGAGTAAATTATCAAATGCAATGTAGCCAGTTTAATTAGAAAATTCAATAATCTTAAA
* * *
130900133 CAAAATGTCCAAATTAATGATTTAAAAAAAAAACCAAAGGAGCAGAATATAGCCAATG----AAA
66 CAACATATCCAAATTAATGATTT---AAAAAAA-CAAAGGAGCAGAATAGAGCCAATGAAAAAAA
* *
130900194 ACAATATAAAATATATCAAATATTGGAGATGACCCAACGAGAAAATGCAGAAATTCCGAGGAAAC
127 AAAACATAAAATATATCAAATATTGGAGATGACCCAACGAGAAAATGCAGAAATTCCGAGGAAAC
*
130900259 AAACAAGAGATAAGAAAAACAGAGAAAATCAGTAATCATAAACAA
192 AAACAAGAGATAAGAAAAACAGAGAAAATCAGTAATAATAAACAA
* *
130900304 ATAAATCAGAGTAAATTATCAAATGCAATGTAGCCAATTTAATTAGAAAATTCAGTAATCTTAAA
1 ATAAATCAGAGTAAATTATCAAATGCAATGTAGCCAGTTTAATTAGAAAATTCAATAATCTTAAA
*
130900369 CAACATATCCACATTAATGATTTAAAAAAA-AAAGGAGCAGAATA-AGCCAATGAAAAAAAAAAA
66 CAACATATCCAAATTAATGATTTAAAAAAACAAAGGAGCAGAATAGAGCCAATGAAAAAAAAAAA
* *
130900432 CATAAAATATGTCAAATACTGGAGATGACCCAACGAGAAAATGCA-AAATTCCGAGGAAACAAAC
131 CATAAAATATATCAAATATTGGAGATGACCCAACGAGAAAATGCAGAAATTCCGAGGAAACAAAC
*
130900496 AAGAGATAAGAAAAACAGAGAAAATCAGTAATAATGAACAA
196 AAGAGATAAGAAAAACAGAGAAAATCAGTAATAATAAACAA
* * * *
130900537 GTAAATCAGAGTAAATTATCAAATGCAGTGTAGCCGGTTTAATTAGAAAA-TCAATCATCTTAAA
1 ATAAATCAGAGTAAATTATCAAATGCAATGTAGCCAGTTTAATTAGAAAATTCAATAATCTTAAA
** * * * *
130900601 CAACCCATCGAAATTAATGA-TTAAACAAAACAAAGGAGTAGAAGAGAACTCATTATGAATGAAA
66 CAACATATCCAAATTAATGATTTAAA-AAAACAAAGGAGCAGAATAGAGC-CA--ATGAA--AAA
** * * * *
130900665 AACAAAACATAAAAGCTATCAAAAATTGGAGATGACCCGGACGAGGAAATGCAGAAATTCCGAGA
125 AA-AAAACATAAAATATATCAAATATTGGAGATGACCC-AACGAGAAAATGCAGAAATTCCGAGG
130900730 AAACAAACAAGAGATAAGAAAAATCAGAGAAAAT
188 AAACAAACAAGAGATAAGAAAAA-CAGAGAAAAT
130900764 TTCAAGTGAC
Statistics
Matches: 407, Mismatches: 37, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
230 8 0.02
231 19 0.05
232 32 0.08
233 123 0.30
234 50 0.12
235 2 0.00
236 78 0.19
237 5 0.01
239 5 0.01
240 30 0.07
241 12 0.03
242 33 0.08
243 10 0.02
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (236 bp):
ATAAATCAGAGTAAATTATCAAATGCAATGTAGCCAGTTTAATTAGAAAATTCAATAATCTTAAA
CAACATATCCAAATTAATGATTTAAAAAAACAAAGGAGCAGAATAGAGCCAATGAAAAAAAAAAA
CATAAAATATATCAAATATTGGAGATGACCCAACGAGAAAATGCAGAAATTCCGAGGAAACAAAC
AAGAGATAAGAAAAACAGAGAAAATCAGTAATAATAAACAA
Found at i:130901768 original size:23 final size:23
Alignment explanation
Indices: 130901717--130901780 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 23
130901707 CGCATATATT
130901717 TTTTAA-ATTATATTATATAAAA
1 TTTTAATATTATATTATATAAAA
* *
130901739 -TTAAATATT-TATATATTTAAAA
1 TTTTAATATTATAT-TATATAAAA
*
130901761 TTTTAATAAT-TATTA-ATAAA
1 TTTTAATATTATATTATATAAA
130901781 TATGATTTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
21 11 0.32
22 13 0.38
23 10 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTTAATATTATATTATATAAAA
Found at i:130904760 original size:40 final size:40
Alignment explanation
Indices: 130904698--130904795 Score: 100
Period size: 40 Copynumber: 2.6 Consensus size: 40
130904688 TTAATCGGTT
* * *
130904698 TAAAATT-AAATT-AATTTTTAA-ATATATATAAAAATT-
1 TAAAATTAAAATTAAAATTTTAATAAATATAAAAAAATTA
* *
130904734 T-AAA-TATAATTAAAAATTTTAATAAATGTAAAAAAATTA
1 TAAAATTAAAATT-AAAATTTTAATAAATATAAAAAAATTA
130904773 TAAAATTAAAATTAAAATTTTAA
1 TAAAATTAAAATTAAAATTTTAA
130904796 ACTAATTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
34 1 0.02
35 7 0.14
36 1 0.02
37 8 0.16
38 12 0.24
39 1 0.02
40 13 0.27
41 6 0.12
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (40 bp):
TAAAATTAAAATTAAAATTTTAATAAATATAAAAAAATTA
Found at i:130904768 original size:19 final size:18
Alignment explanation
Indices: 130904714--130904767 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
130904704 TAAATTAATT
130904714 TTTAAATAT-ATATAAAAA
1 TTTAAATATAAT-TAAAAA
130904732 TTTAAATATAATTAAAAA
1 TTTAAATATAATTAAAAA
*
130904750 TTTTAATA-AATGTAAAAA
1 TTTAAATATAAT-TAAAAA
130904768 AATTATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
17 3 0.09
18 28 0.85
19 2 0.06
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
TTTAAATATAATTAAAAA
Found at i:130905079 original size:22 final size:24
Alignment explanation
Indices: 130905040--130905084 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 24
130905030 GTGTTAAGTA
130905040 TAAATATTTTTAAAATAT-TATGG
1 TAAATATTTTTAAAATATATATGG
* *
130905063 TAAA-ATTTTTCATATATATATG
1 TAAATATTTTTAAAATATATATG
130905085 TATATTGTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (24 bp):
TAAATATTTTTAAAATATATATGG
Found at i:130909773 original size:6 final size:6
Alignment explanation
Indices: 130909762--130909787 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
130909752 TCAGTAGTAT
130909762 GTGCAA GTGCAA GTGCAA GTGCAA GT
1 GTGCAA GTGCAA GTGCAA GTGCAA GT
130909788 AATATTCTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.35, T:0.19
Consensus pattern (6 bp):
GTGCAA
Found at i:130910652 original size:41 final size:41
Alignment explanation
Indices: 130910595--130910680 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
130910585 TGTGTTTAAG
130910595 TCACCCATAAGGACATTCAACATAGCATGCAAATGGGACTT
1 TCACCCATAAGGACATTCAACATAGCATGCAAATGGGACTT
130910636 TCACCCATAAGGACATTCAACATAGCATGCAAATGGGACTT
1 TCACCCATAAGGACATTCAACATAGCATGCAAATGGGACTT
130910677 TCAC
1 TCAC
130910681 ACTATTTTCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (41 bp):
TCACCCATAAGGACATTCAACATAGCATGCAAATGGGACTT
Found at i:130916937 original size:25 final size:25
Alignment explanation
Indices: 130916909--130916960 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
130916899 GGTAAAAATG
130916909 TAAAAATATGTTTCAAAAACTCATA
1 TAAAAATATGTTTCAAAAACTCATA
*
130916934 TAAAAATGTGTTTCAAAAACTCATA
1 TAAAAATATGTTTCAAAAACTCATA
130916959 TA
1 TA
130916961 TTTTATGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.33
Consensus pattern (25 bp):
TAAAAATATGTTTCAAAAACTCATA
Found at i:130918502 original size:2 final size:2
Alignment explanation
Indices: 130918495--130918543 Score: 91
Period size: 2 Copynumber: 25.0 Consensus size: 2
130918485 GCCATTTCAT
130918495 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
130918537 T- TA TA TA
1 TA TA TA TA
130918544 CACTTATTAC
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:130920219 original size:15 final size:15
Alignment explanation
Indices: 130920199--130920229 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
130920189 CGCCCCACTT
*
130920199 TCAGAGTCTCCTCCC
1 TCAGAGTCTCCACCC
130920214 TCAGAGTCTCCACCC
1 TCAGAGTCTCCACCC
130920229 T
1 T
130920230 TAAAATCACG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.45, G:0.13, T:0.26
Consensus pattern (15 bp):
TCAGAGTCTCCACCC
Found at i:130922035 original size:14 final size:14
Alignment explanation
Indices: 130922016--130922043 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
130922006 ACCACACGCT
130922016 ACAATATCGCTACA
1 ACAATATCGCTACA
130922030 ACAATATCGCTACA
1 ACAATATCGCTACA
130922044 GTATCTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (14 bp):
ACAATATCGCTACA
Found at i:130922044 original size:46 final size:46
Alignment explanation
Indices: 130921986--130922075 Score: 148
Period size: 46 Copynumber: 2.0 Consensus size: 46
130921976 CTCACGCTAT
130921986 AATATCGCTACAGTATCTAAACCACACGCTACA-A-TATCGCTACAAC
1 AATATCGCTACAGTATCTAAA-C-CACGCTACACAGTATCGCTACAAC
130922032 AATATCGCTACAGTATCTAAACCACGCTACACAGTATCGCTACA
1 AATATCGCTACAGTATCTAAACCACGCTACACAGTATCGCTACA
130922076 GTATCTAAAC
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
44 9 0.21
45 2 0.05
46 31 0.74
ACGTcount: A:0.38, C:0.30, G:0.10, T:0.22
Consensus pattern (46 bp):
AATATCGCTACAGTATCTAAACCACGCTACACAGTATCGCTACAAC
Found at i:130922072 original size:32 final size:33
Alignment explanation
Indices: 130922023--130922086 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
130922013 GCTACAATAT
130922023 CGCTACAACAATATCGCTACAGTATCTAAACCA
1 CGCTACAACAATATCGCTACAGTATCTAAACCA
*
130922056 CGCTAC-ACAGTATCGCTACAGTATCTAAACC
1 CGCTACAACAATATCGCTACAGTATCTAAACC
130922087 GCAAGTAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 24 0.80
33 6 0.20
ACGTcount: A:0.36, C:0.31, G:0.11, T:0.22
Consensus pattern (33 bp):
CGCTACAACAATATCGCTACAGTATCTAAACCA
Found at i:130923468 original size:54 final size:53
Alignment explanation
Indices: 130923352--130923560 Score: 179
Period size: 54 Copynumber: 3.9 Consensus size: 53
130923342 AAACAGAAAT
* * ** * * *
130923352 TACACAATAGTAGAGTTGTGTCGTAGGTGCAACCGGCGGCTCT-TAGCCCAAAAT
1 TACACAATAGTAGAG-TATGTCGTAGGTGCAATCGTTGGCT-TGTGGCCCAGAAC
* * *
130923406 TACACAATACTAGAGTAGTGTCGTAGGTGCAATCATTGGCTTGTGGCCCGGAAC
1 TACACAATAGTAGAGTA-TGTCGTAGGTGCAATCGTTGGCTTGTGGCCCAGAAC
* * * * ** *
130923460 TACGCAATAGTAGAATCATGTTGTAGGTGCAACCGTTGGCTCT-TGGCTTAGAAT
1 TACACAATAGTAGAGT-ATGTCGTAGGTGCAATCGTTGGCT-TGTGGCCCAGAAC
* *
130923514 TACACAATAGTAGAGTCCTGTCGTAGGTGCAATCGTTGGCATGTGGC
1 TACACAATAGTAGAGT-ATGTCGTAGGTGCAATCGTTGGCTTGTGGC
130923561 ATAGTAGAGT
Statistics
Matches: 124, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
53 3 0.02
54 119 0.96
55 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (53 bp):
TACACAATAGTAGAGTATGTCGTAGGTGCAATCGTTGGCTTGTGGCCCAGAAC
Found at i:130923545 original size:108 final size:108
Alignment explanation
Indices: 130923356--130923560 Score: 275
Period size: 108 Copynumber: 1.9 Consensus size: 108
130923346 AGAAATTACA
* **
130923356 CAATAGTAGAGTTGTGTCGTAGGTGCAACCGGCGGCTCTTAGCCCAAAATTACACAATACTAGAG
1 CAATAGTAGAATCATGTCGTAGGTGCAACCGGCGGCTCTTAGCCCAAAATTACACAATACTAGAG
* *
130923421 TAGTGTCGTAGGTGCAATCATTGGCTTGTGGCCCGGAACTACG
66 TACTGTCGTAGGTGCAATCATTGGCATGTGGCCCGGAACTACG
* ** * ** * *
130923464 CAATAGTAGAATCATGTTGTAGGTGCAACCGTTGGCTCTTGGCTTAGAATTACACAATAGTAGAG
1 CAATAGTAGAATCATGTCGTAGGTGCAACCGGCGGCTCTTAGCCCAAAATTACACAATACTAGAG
* *
130923529 TCCTGTCGTAGGTGCAATCGTTGGCATGTGGC
66 TACTGTCGTAGGTGCAATCATTGGCATGTGGC
130923561 ATAGTAGAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
108 82 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (108 bp):
CAATAGTAGAATCATGTCGTAGGTGCAACCGGCGGCTCTTAGCCCAAAATTACACAATACTAGAG
TACTGTCGTAGGTGCAATCATTGGCATGTGGCCCGGAACTACG
Found at i:130928608 original size:25 final size:23
Alignment explanation
Indices: 130928552--130928612 Score: 95
Period size: 23 Copynumber: 2.6 Consensus size: 23
130928542 GGGAGAATGA
130928552 AATTTTAATTTTTTATAGTCTAT
1 AATTTTAATTTTTTATAGTCTAT
130928575 AATTTTAATTTTTTATAGTCTAT
1 AATTTTAATTTTTTATAGTCTAT
*
130928598 ATCTTTATAATTTTT
1 A-ATTT-TAATTTTT
130928613 AAAAAATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
23 24 0.69
24 3 0.09
25 8 0.23
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (23 bp):
AATTTTAATTTTTTATAGTCTAT
Found at i:130928919 original size:21 final size:21
Alignment explanation
Indices: 130928893--130928932 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
130928883 GGTCGAGTTT
130928893 GAATTTAA-TTTAACAATAATC
1 GAATTTAATTTTAA-AATAATC
130928914 GAATTTAATTTTAAAATAA
1 GAATTTAATTTTAAAATAA
130928933 AAAAAATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
GAATTTAATTTTAAAATAATC
Found at i:130931318 original size:23 final size:23
Alignment explanation
Indices: 130931292--130931337 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
130931282 GTATAAGGAC
*
130931292 TAATTTTTAACAGTAGAAATAAA
1 TAATTTTTAACAGAAGAAATAAA
*
130931315 TAATTTTTAACAGAAGAACTAAA
1 TAATTTTTAACAGAAGAAATAAA
130931338 CTGCTTTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.52, C:0.07, G:0.09, T:0.33
Consensus pattern (23 bp):
TAATTTTTAACAGAAGAAATAAA
Found at i:130934570 original size:31 final size:31
Alignment explanation
Indices: 130934504--130934583 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
130934494 AAAAAAAAAA
* * *
130934504 AGTTCACGCCCCAATGTAGGAATAGTTGCCT
1 AGTTCAAGCCCCAATGTAGGAACAATTGCCT
130934535 AGTTCAAGCCCCAATGTAGGAACAATCAT-CC-
1 AGTTCAAGCCCCAATGTAGGAACAAT--TGCCT
*
130934566 AGTTCAGGCCCCAATGTA
1 AGTTCAAGCCCCAATGTA
130934584 AGAAAAGTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 40 0.93
32 2 0.05
33 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (31 bp):
AGTTCAAGCCCCAATGTAGGAACAATTGCCT
Found at i:130937307 original size:18 final size:19
Alignment explanation
Indices: 130937284--130937328 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
130937274 TAGGAGCAAT
130937284 TTTTTATATTAAAATA-TA
1 TTTTTATATTAAAATATTA
*
130937302 TTTTTA-AATAAAATATTA
1 TTTTTATATTAAAATATTA
130937320 TTTTT-TATT
1 TTTTTATATT
130937329 TTTATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTTTATATTAAAATATTA
Found at i:130938346 original size:28 final size:27
Alignment explanation
Indices: 130938282--130938336 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
130938272 TACTAATCCG
*
130938282 AAAATAAAAAAATAATATTTTATTTAA
1 AAAACAAAAAAATAATATTTTATTTAA
130938309 AAAACAAAAAAATATATATATTT-TTTAA
1 AAAACAAAAAAATA-ATAT-TTTATTTAA
130938337 TATAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 13 0.52
28 9 0.36
29 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (27 bp):
AAAACAAAAAAATAATATTTTATTTAA
Found at i:130938668 original size:17 final size:17
Alignment explanation
Indices: 130938646--130938686 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
130938636 TAATTTTTCA
**
130938646 TTTAATTATTTGTCTCT
1 TTTAATTATTCATCTCT
130938663 TTTAATTATTCATCTCT
1 TTTAATTATTCATCTCT
*
130938680 TTCAATT
1 TTTAATT
130938687 CTTAAACTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.22, C:0.15, G:0.02, T:0.61
Consensus pattern (17 bp):
TTTAATTATTCATCTCT
Found at i:130938845 original size:11 final size:11
Alignment explanation
Indices: 130938789--130938845 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
130938779 ACGTTAATAA
*
130938789 TTAATTAAATTT
1 TTAAATAAA-TT
130938801 TTAAA-AAATT
1 TTAAATAAATT
** *
130938811 AAAAAT-ATTT
1 TTAAATAAATT
130938821 TTAAATAAATT
1 TTAAATAAATT
130938832 TTAAATAAATT
1 TTAAATAAATT
130938843 TTA
1 TTA
130938846 TAACTTTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
10 12 0.33
11 20 0.56
12 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TTAAATAAATT
Found at i:130939887 original size:22 final size:23
Alignment explanation
Indices: 130939837--130939887 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
130939827 TAAATATATG
*
130939837 ATATAACTATATTATATTATTAA
1 ATATAAATATATTATATTATTAA
130939860 A-A-AAATCATATTATA-TA-TAA
1 ATATAAAT-ATATTATATTATTAA
130939880 ATATAAAT
1 ATATAAAT
130939888 GGACTTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
20 4 0.17
21 6 0.25
22 13 0.54
23 1 0.04
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (23 bp):
ATATAAATATATTATATTATTAA
Found at i:130950232 original size:194 final size:195
Alignment explanation
Indices: 130949899--130950331 Score: 466
Period size: 195 Copynumber: 2.2 Consensus size: 195
130949889 TTTTATTTGT
*
130949899 TTTATATTTTGAAAGTTAAAATTTTTAGTTGGATAATGAGATACTATATGCAGAATTTAGTTTGC
1 TTTATATTTTGAAAGTTAAAATTTTTAGTTGGATAATGAAATACTATATGCAGAATTTAGTTTGC
* * ** *
130949964 TAGTTATCGTGGTGGTAAGAATGGCTTTTTGTTTCTCAAATTTGTTAGATTCTTTTTGTGTTTGG
66 TAGTAATC-TGGTGGAAAGAATGGCTTTTTGTTTCTCAAATTTGTTAGATTCAATTTGTGTGTGG
* *
130950029 TCACTGAG-AAAGGAACTCCAGGAAAATTAATCAATTAATTACATTAGTTTTAACTGATTTATGA
130 TCACTGAGAAAAGAAACTCCAGGAAAATTAAGCAATTAATTACATTAGTTTTAACTGATTTATGA
130950093 C
195 C
* * * ** * *
130950094 TTTATATTTTGAAAGTTCCAATTTTTTGGTTGGATAATGAAATGTTA-ATGCATAATTTGGCTTT
1 TTTATATTTTGAAAGTT-AAAATTTTTAGTTGGATAATGAAATACTATATGCAGAATTTAG-TTT
* * *
130950158 -CTAGTAAT-TGGTATGGAAAGGATGG-TTTCTTG-TTCTTAAATTTGTTTGATTCAATTTGTGT
64 GCTAGTAATCTGG--TGGAAAGAATGGCTTT-TTGTTTCTCAAATTTGTTAGATTCAATTTGTGT
* * * * **
130950219 GTGTTTACTGAGAAAAGAAACTGCAGGAAAATTAAGCAATTAATTACTTTTTTTTTTCCAACT-A
126 GTGGTCACTGAGAAAAGAAACTCCAGGAAAATTAAGCAATTAATTAC-ATTAGTTTT--AACTGA
130950283 TTTATGAC
188 TTTATGAC
* * * * *
130950291 TCTATACTTTGAAAAGTTTATAGTTTTAGTTGGATAATGAA
1 TTTATATTTTG-AAAGTTAAAATTTTTAGTTGGATAATGAA
130950332 TTGGTAAATG
Statistics
Matches: 197, Mismatches: 31, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
193 3 0.02
194 37 0.19
195 79 0.40
196 32 0.16
197 36 0.18
198 10 0.05
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.43
Consensus pattern (195 bp):
TTTATATTTTGAAAGTTAAAATTTTTAGTTGGATAATGAAATACTATATGCAGAATTTAGTTTGC
TAGTAATCTGGTGGAAAGAATGGCTTTTTGTTTCTCAAATTTGTTAGATTCAATTTGTGTGTGGT
CACTGAGAAAAGAAACTCCAGGAAAATTAAGCAATTAATTACATTAGTTTTAACTGATTTATGAC
Found at i:130954328 original size:313 final size:313
Alignment explanation
Indices: 130953760--130954389 Score: 1161
Period size: 313 Copynumber: 2.0 Consensus size: 313
130953750 ATGATAATTT
* *
130953760 CACTATCTCCAAAATATTACAAACAAATAGAATTTCTTAAGAATTCTCAAATGGGAGAAGAGAAA
1 CACTATCTCCAAAATATTACAAACAAATAGAATTCCTTAAGAATTCTCAAATAGGAGAAGAGAAA
130953825 AAACTAAGAGAGAAAGAATGGTTGGGATGATTGAAATGAGAAATGATTAGGCCTATTTATAGTTG
66 AAACTAAGAGAGAAAGAATGGTTGGGATGATTGAAATGAGAAATGATTAGGCCTATTTATAGTTG
* *
130953890 AGGTTTAGGGACTAACTTGCAAATGGCCTAAAAATTAGGGACCAAAATTGCAATTATCCCATTCA
131 AGGTTCAGAGACTAACTTGCAAATGGCCTAAAAATTAGGGACCAAAATTGCAATTATCCCATTCA
*
130953955 ACTTTAAACCCACTTGCCAACCACTTTTTACTTTCGGTGCCAATTGCACCTCCCACCATTTTTGA
196 ACTTTAAACCCACTTGCCAACCACTTTTTACTTTCAGTGCCAATTGCACCTCCCACCATTTTTGA
130954020 CTTTTCAACAATCTCCACCTTGAAGATTTGATTAGGATAATCACATATTCACA
261 CTTTTCAACAATCTCCACCTTGAAGATTTGATTAGGATAATCACATATTCACA
*
130954073 CACTATCTCCAAAATATTACAAACAAATAGAATTCCTTGAGAATTCTCAAATAGGAGAAGAGAAA
1 CACTATCTCCAAAATATTACAAACAAATAGAATTCCTTAAGAATTCTCAAATAGGAGAAGAGAAA
130954138 AAACTAAGAGAGAAAGAATGGTTGGGATGATTGAAATGAGAAATGATTAGGCCTATTTATAGTTG
66 AAACTAAGAGAGAAAGAATGGTTGGGATGATTGAAATGAGAAATGATTAGGCCTATTTATAGTTG
* *
130954203 AGGTTCAGAGATTAACTTGCAAATGGCCTAAAAATTAGGGACCAAAATTGCAATTGTCCCATTCA
131 AGGTTCAGAGACTAACTTGCAAATGGCCTAAAAATTAGGGACCAAAATTGCAATTATCCCATTCA
*
130954268 ACTTTAAACCCACTTGCCAACCACTTTTTACTTTCAGTGCCAATTGCATCTCCCACCATTTTTGA
196 ACTTTAAACCCACTTGCCAACCACTTTTTACTTTCAGTGCCAATTGCACCTCCCACCATTTTTGA
* *
130954333 CTTTTCAACAATCTCCACTTTGAAGATTTGATTAGGATAATCACATCTTCACA
261 CTTTTCAACAATCTCCACCTTGAAGATTTGATTAGGATAATCACATATTCACA
130954386 CACT
1 CACT
130954390 TCCTTCAACT
Statistics
Matches: 306, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
313 306 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.29
Consensus pattern (313 bp):
CACTATCTCCAAAATATTACAAACAAATAGAATTCCTTAAGAATTCTCAAATAGGAGAAGAGAAA
AAACTAAGAGAGAAAGAATGGTTGGGATGATTGAAATGAGAAATGATTAGGCCTATTTATAGTTG
AGGTTCAGAGACTAACTTGCAAATGGCCTAAAAATTAGGGACCAAAATTGCAATTATCCCATTCA
ACTTTAAACCCACTTGCCAACCACTTTTTACTTTCAGTGCCAATTGCACCTCCCACCATTTTTGA
CTTTTCAACAATCTCCACCTTGAAGATTTGATTAGGATAATCACATATTCACA
Found at i:130958656 original size:21 final size:19
Alignment explanation
Indices: 130958610--130958648 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
130958600 TGTGAAAGAG
130958610 AAATGGAAATTATATAAGC
1 AAATGGAAATTATATAAGC
130958629 AAATGGAAATTATATAAGC
1 AAATGGAAATTATATAAGC
130958648 A
1 A
130958649 TCGTTGGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.15, T:0.26
Consensus pattern (19 bp):
AAATGGAAATTATATAAGC
Found at i:130960781 original size:65 final size:65
Alignment explanation
Indices: 130960677--130960802 Score: 200
Period size: 65 Copynumber: 1.9 Consensus size: 65
130960667 CGATTAGCTG
*
130960677 TTTGAATTGAGTATTACAAAAATGGAATTCAGTTTTATTGATGGGTTGAGTTGATTAAACTCGTT
1 TTTGAATTGAGTATTACAAAAATGGAATTCAGTTTTATTGATGGGTTGAGTTGATCAAACTCGTT
* * *
130960742 TTTGAATTGAGTATTACGAAATTTGAATTC-GATTTTATTGATGGGTTGAGTTGATCAAACT
1 TTTGAATTGAGTATTACAAAAATGGAATTCAG-TTTTATTGATGGGTTGAGTTGATCAAACT
130960803 TGAATTTGAC
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
64 1 0.02
65 55 0.98
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (65 bp):
TTTGAATTGAGTATTACAAAAATGGAATTCAGTTTTATTGATGGGTTGAGTTGATCAAACTCGTT
Found at i:130974087 original size:2 final size:2
Alignment explanation
Indices: 130974082--130974112 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
130974072 TTTTTTTAAT
130974082 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
130974113 CTAAATTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:130980176 original size:2 final size:2
Alignment explanation
Indices: 130980169--130980195 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
130980159 TGACTACCTT
130980169 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
130980196 GAAAATACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:130982903 original size:32 final size:31
Alignment explanation
Indices: 130982859--130982919 Score: 72
Period size: 31 Copynumber: 1.9 Consensus size: 31
130982849 CTTTGATATA
*
130982859 TACTATAGTGAAAATT-TTCACTTTTACCCTAG
1 TACTATAGTG-AAATTCTT-ACTTTGACCCTAG
130982891 TACTAT-GATGAAATTCTTACTTTGACCCT
1 TACTATAG-TGAAATTCTTACTTTGACCCT
130982920 TTTATTCTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
31 16 0.62
32 10 0.38
ACGTcount: A:0.30, C:0.20, G:0.10, T:0.41
Consensus pattern (31 bp):
TACTATAGTGAAATTCTTACTTTGACCCTAG
Found at i:130986242 original size:17 final size:17
Alignment explanation
Indices: 130986203--130986258 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
130986193 TTATATTTTC
130986203 TTTTTTAATTTTGATGAACT
1 TTTTTTAATTTT-AT-AA-T
*
130986223 TTTTATAATTTT-TAAT
1 TTTTTTAATTTTATAAT
*
130986239 TTTTTTAGTTTTATAAT
1 TTTTTTAATTTTATAAT
130986256 TTT
1 TTT
130986259 AAATTATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 11 0.34
17 9 0.28
18 1 0.03
20 11 0.34
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTTTAATTTTATAAT
Found at i:130988704 original size:16 final size:16
Alignment explanation
Indices: 130988683--130988715 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
130988673 GGATTAACTG
130988683 TAAATTTAGAT-TTATT
1 TAAATTTA-ATCTTATT
130988699 TAAATTTAATCTTATT
1 TAAATTTAATCTTATT
130988715 T
1 T
130988716 GATTATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (16 bp):
TAAATTTAATCTTATT
Found at i:130991613 original size:2 final size:2
Alignment explanation
Indices: 130991606--130991631 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
130991596 TTATTTGCAA
130991606 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
130991632 TAAAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:130997441 original size:7 final size:7
Alignment explanation
Indices: 130997429--130997460 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
130997419 TTAAAATTTT
130997429 ATTTATA
1 ATTTATA
130997436 ATTTATA
1 ATTTATA
130997443 ATTTATA
1 ATTTATA
130997450 ATTTATA
1 ATTTATA
130997457 ATTT
1 ATTT
130997461 TTTTGTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTATA
Found at i:130998721 original size:22 final size:22
Alignment explanation
Indices: 130998693--130998758 Score: 123
Period size: 22 Copynumber: 3.0 Consensus size: 22
130998683 AGTAGAAAGA
130998693 AAGCTTTCAATTAGTGTAAGCG
1 AAGCTTTCAATTAGTGTAAGCG
130998715 AAGCTTTCAATTAGTGTAAGCG
1 AAGCTTTCAATTAGTGTAAGCG
*
130998737 AAGCTTTCAATCAGTGTAAGCG
1 AAGCTTTCAATTAGTGTAAGCG
130998759 GTGCAAACAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 43 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (22 bp):
AAGCTTTCAATTAGTGTAAGCG
Found at i:131009553 original size:18 final size:18
Alignment explanation
Indices: 131009519--131009553 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
131009509 ATGACTTTTA
*
131009519 AAAGTAAAAATTAAAAAT
1 AAAGTAAAAATAAAAAAT
131009537 AAAGTAAAAATAAAAAA
1 AAAGTAAAAATAAAAAA
131009554 AGAGGGTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (18 bp):
AAAGTAAAAATAAAAAAT
Found at i:131012293 original size:19 final size:19
Alignment explanation
Indices: 131012271--131012313 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
131012261 ATTATATTTA
131012271 TTTAATATTAATATA-AAAT
1 TTTAAT-TTAATATATAAAT
* *
131012290 TTTAATTTATTATATATAT
1 TTTAATTTAATATATAAAT
131012309 TTTAA
1 TTTAA
131012314 AAATATTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTAATTTAATATATAAAT
Found at i:131012351 original size:10 final size:10
Alignment explanation
Indices: 131012323--131012353 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
131012313 AAAATATTTA
131012323 TTTTATAAATT
1 TTTTA-AAATT
131012334 TTTTAAAATT
1 TTTTAAAATT
131012344 TTTTAAAATT
1 TTTTAAAATT
131012354 AGGATCAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.75
11 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:131022122 original size:14 final size:14
Alignment explanation
Indices: 131022100--131022129 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
131022090 TTAAATATTT
131022100 TTTTAATTTTAAAA
1 TTTTAATTTTAAAA
*
131022114 TTTTCATTTTAAAA
1 TTTTAATTTTAAAA
131022128 TT
1 TT
131022130 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTAATTTTAAAA
Found at i:131025167 original size:2 final size:2
Alignment explanation
Indices: 131025160--131025195 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
131025150 TAATTGTCGA
131025160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
131025196 GCTAAGGTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:131026035 original size:17 final size:19
Alignment explanation
Indices: 131026003--131026037 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
131025993 TGACATCTTC
131026003 AACTTATTTTAGTTATTAA
1 AACTTATTTTAGTTATTAA
131026022 AACTT-TTTTA-TTATTA
1 AACTTATTTTAGTTATTA
131026038 CAATCCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (19 bp):
AACTTATTTTAGTTATTAA
Found at i:131026684 original size:13 final size:13
Alignment explanation
Indices: 131026666--131026693 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
131026656 TTCATTCTTT
131026666 TTTTTAATAAATA
1 TTTTTAATAAATA
131026679 TTTTTAATAAATA
1 TTTTTAATAAATA
131026692 TT
1 TT
131026694 ATATAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTTTTAATAAATA
Found at i:131028089 original size:31 final size:31
Alignment explanation
Indices: 131028054--131028112 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
131028044 ACTCAATGAC
131028054 TTAAATAAAAACTTTCGAATAATTTAATAAT
1 TTAAATAAAAACTTTCGAATAATTTAATAAT
* * *
131028085 TTAAATGAAAACTTTTGAATAGTTTAAT
1 TTAAATAAAAACTTTCGAATAATTTAAT
131028113 GACCATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.47, C:0.05, G:0.07, T:0.41
Consensus pattern (31 bp):
TTAAATAAAAACTTTCGAATAATTTAATAAT
Found at i:131033536 original size:24 final size:24
Alignment explanation
Indices: 131033483--131033537 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 24
131033473 GGAATGTTTC
* *
131033483 TTTATATTATATTATTTTATGCTT
1 TTTATATTATATCATTTAATGCTT
* *
131033507 TATATATTATCTCATTTAAATG-TT
1 TTTATATTATATCATTT-AATGCTT
131033531 TTTATAT
1 TTTATAT
131033538 ATTCGAACAC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (24 bp):
TTTATATTATATCATTTAATGCTT
Found at i:131042608 original size:29 final size:29
Alignment explanation
Indices: 131042535--131042593 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
131042525 TATTTTCGAA
131042535 TAATTTAATTCTTTTTGTCTTTTTAAGTT
1 TAATTTAATTCTTTTTGTCTTTTTAAGTT
131042564 TAATTTAATTCTTTTTGTCTTTTTAAGTT
1 TAATTTAATTCTTTTTGTCTTTTTAAGTT
131042593 T
1 T
131042594 CTTTCTTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (29 bp):
TAATTTAATTCTTTTTGTCTTTTTAAGTT
Found at i:131049607 original size:11 final size:12
Alignment explanation
Indices: 131049589--131049622 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
131049579 TCGAGTTTTT
131049589 TATTTTTAATAA
1 TATTTTTAATAA
131049601 T-TTTTTAATAA
1 TATTTTTAATAA
*
131049612 TATATTTAATA
1 TATTTTTAATA
131049623 TATCAAACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTTTTAATAA
Found at i:131051592 original size:21 final size:21
Alignment explanation
Indices: 131051568--131051617 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
131051558 TTCAATTATG
*
131051568 TCCCTTCTTTCACGTCTCTTC
1 TCCCTTCTTTCACGTCTATTC
131051589 TCCCTTCTTTCACGTCTATTC
1 TCCCTTCTTTCACGTCTATTC
131051610 TCCCTTCT
1 TCCCTTCT
131051618 ATGAAGCCTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.42, G:0.04, T:0.48
Consensus pattern (21 bp):
TCCCTTCTTTCACGTCTATTC
Found at i:131057716 original size:21 final size:20
Alignment explanation
Indices: 131057680--131057721 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
131057670 TTTCAATAAA
*
131057680 TAAAAAATATATATAATTAT
1 TAAAAAATATATATAAATAT
*
131057700 TAAATAATATAATATAAATAT
1 TAAAAAATAT-ATATAAATAT
131057721 T
1 T
131057722 TTAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAAAATATATATAAATAT
Found at i:131058885 original size:31 final size:31
Alignment explanation
Indices: 131058850--131058908 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
131058840 GTTTAGGAAT
*
131058850 TTAAATAAAAA-ATTTTAAATAATTCAGTGAC
1 TTAAATAAAAATA-TTCAAATAATTCAGTGAC
*
131058881 TTAAATAAAAATATTCGAATAATTCAGT
1 TTAAATAAAAATATTCAAATAATTCAGT
131058909 AACTATGTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.36
Consensus pattern (31 bp):
TTAAATAAAAATATTCAAATAATTCAGTGAC
Found at i:131060797 original size:15 final size:16
Alignment explanation
Indices: 131060779--131060808 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
131060769 AATTTTATCA
131060779 TTATTAATT-TAAAAT
1 TTATTAATTATAAAAT
131060794 TTATTAATTATAAAA
1 TTATTAATTATAAAA
131060809 AACCTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTATTAATTATAAAAT
Found at i:131067345 original size:13 final size:13
Alignment explanation
Indices: 131067329--131067370 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
131067319 ATATATTTAT
131067329 GATATAATTAAAA
1 GATATAATTAAAA
131067342 GATA-ATATTAAAA
1 GATATA-ATTAAAA
*
131067355 GAAATAAATTAAAA
1 GATAT-AATTAAAA
131067369 GA
1 GA
131067371 ATTTTCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 1 0.04
13 14 0.56
14 9 0.36
15 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.10, T:0.26
Consensus pattern (13 bp):
GATATAATTAAAA
Found at i:131067367 original size:14 final size:14
Alignment explanation
Indices: 131067334--131067371 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
131067324 TTTATGATAT
131067334 AATTAAAAG--ATA
1 AATTAAAAGAAATA
131067346 ATATTAAAAGAAATA
1 A-ATTAAAAGAAATA
131067361 AATTAAAAGAA
1 AATTAAAAGAA
131067372 TTTTCACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.04
13 8 0.35
14 10 0.43
15 4 0.17
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (14 bp):
AATTAAAAGAAATA
Found at i:131067710 original size:31 final size:30
Alignment explanation
Indices: 131067646--131067711 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
131067636 AGTCTATATC
* *
131067646 TTTATAATTTTTAAATAATTAAATCTAATT
1 TTTATAATTTTTAAAGAATTAAATCTAAAT
*
131067676 TTTATAATTTTTGAAGAGATTAAA-CTATAAT
1 TTTATAATTTTTAAAGA-ATTAAATCTA-AAT
131067707 TTTAT
1 TTTAT
131067712 TTTTACTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 18 0.58
31 13 0.42
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.52
Consensus pattern (30 bp):
TTTATAATTTTTAAAGAATTAAATCTAAAT
Found at i:131067985 original size:39 final size:39
Alignment explanation
Indices: 131067942--131068032 Score: 146
Period size: 39 Copynumber: 2.3 Consensus size: 39
131067932 GTCCAATCCC
*
131067942 AAATTTAAGTTTTTATTGTTTCGGTTACCAACTATTAAT
1 AAATTTAAGTTTTTATTGTTTAGGTTACCAACTATTAAT
* *
131067981 AAATTTAAGTTTTTATTGTTTAGGTTATCTACTATTAAT
1 AAATTTAAGTTTTTATTGTTTAGGTTACCAACTATTAAT
*
131068020 AAATTTACGTTTT
1 AAATTTAAGTTTT
131068033 GATCACTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 48 1.00
ACGTcount: A:0.31, C:0.08, G:0.10, T:0.52
Consensus pattern (39 bp):
AAATTTAAGTTTTTATTGTTTAGGTTACCAACTATTAAT
Found at i:131073611 original size:17 final size:18
Alignment explanation
Indices: 131073573--131073612 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
131073563 TAAATTTGAT
131073573 TTTTTTTATCTTTATGTAA
1 TTTTTTTATCTTTATG-AA
*
131073592 TTTTTTTATTTTTATG-A
1 TTTTTTTATCTTTATGAA
131073609 TTTT
1 TTTT
131073613 GATTTTTGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
19 15 0.75
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (18 bp):
TTTTTTTATCTTTATGAA
Found at i:131075006 original size:32 final size:32
Alignment explanation
Indices: 131074960--131075031 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 32
131074950 AAATGAAGTG
131074960 ATTCCAACTTCAGAAATGGTTTAGGGGATGGA
1 ATTCCAACTTCAGAAATGGTTTAGGGGATGGA
*
131074992 ATTCTAACTTCAGAAATGGTTTAGGGGATGGA
1 ATTCCAACTTCAGAAATGGTTTAGGGGATGGA
131075024 ATTCCAAC
1 ATTCCAAC
131075032 CATATACGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (32 bp):
ATTCCAACTTCAGAAATGGTTTAGGGGATGGA
Found at i:131075439 original size:22 final size:22
Alignment explanation
Indices: 131075411--131075454 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
131075401 TATTGGTGGT
131075411 ATCCTTAATACATTCAAATGTC
1 ATCCTTAATACATTCAAATGTC
131075433 ATCCTTAATACATTCAAATGTC
1 ATCCTTAATACATTCAAATGTC
131075455 GCAAACACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (22 bp):
ATCCTTAATACATTCAAATGTC
Found at i:131082927 original size:30 final size:31
Alignment explanation
Indices: 131082891--131082951 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
131082881 AGTTTCATTT
*
131082891 TAGTCACTCAAC-TT-TTAAAAAGTAACAAAA
1 TAGTCACT-AACGTTATAAAAAAGTAACAAAA
*
131082921 TAGTCACTAACGTTATAAAAAAGTGACAAAA
1 TAGTCACTAACGTTATAAAAAAGTAACAAAA
131082952 CAGCCACCGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 3 0.11
30 10 0.37
31 14 0.52
ACGTcount: A:0.51, C:0.15, G:0.10, T:0.25
Consensus pattern (31 bp):
TAGTCACTAACGTTATAAAAAAGTAACAAAA
Found at i:131083017 original size:21 final size:21
Alignment explanation
Indices: 131082993--131083032 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
131082983 TTAACCGGAC
131082993 AGCTAATGTGGCAAGTTAATT
1 AGCTAATGTGGCAAGTTAATT
* *
131083014 AGCTGATGTGGCCAGTTAA
1 AGCTAATGTGGCAAGTTAA
131083033 CTTGCCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (21 bp):
AGCTAATGTGGCAAGTTAATT
Found at i:131083085 original size:6 final size:6
Alignment explanation
Indices: 131083074--131083117 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
131083064 TAACAGAGAG
* *
131083074 AAGAAA AAGAAA AAGAAA AAGAAG AAG-AA AAGAAG AAGAAA AAG
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAG
131083118 GAGAAGAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 4 0.12
6 29 0.88
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (6 bp):
AAGAAA
Found at i:131083104 original size:11 final size:12
Alignment explanation
Indices: 131083072--131083129 Score: 82
Period size: 12 Copynumber: 4.8 Consensus size: 12
131083062 AATAACAGAG
131083072 AGAAGAAAAAGA
1 AGAAGAAAAAGA
*
131083084 AAAAGAAAAAGA
1 AGAAGAAAAAGA
131083096 AGAAG-AAAAGA
1 AGAAGAAAAAGA
*
131083107 AGAAGAAAAAGG
1 AGAAGAAAAAGA
131083119 AGAAGAGAAAA
1 AGAAGA-AAAA
131083130 AATGGAGATG
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
11 11 0.27
12 26 0.63
13 4 0.10
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAGAAAAAGA
Found at i:131083112 original size:23 final size:23
Alignment explanation
Indices: 131083072--131083124 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
131083062 AATAACAGAG
131083072 AGAAGAAAAAGAAAAAGAAAAAGA
1 AGAAG-AAAAGAAAAAGAAAAAGA
* *
131083096 AGAAGAAAAGAAGAAGAAAAAGG
1 AGAAGAAAAGAAAAAGAAAAAGA
131083119 AGAAGA
1 AGAAGA
131083125 GAAAAAATGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 22 0.81
24 5 0.19
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (23 bp):
AGAAGAAAAGAAAAAGAAAAAGA
Found at i:131084130 original size:3 final size:3
Alignment explanation
Indices: 131084115--131084165 Score: 86
Period size: 3 Copynumber: 17.3 Consensus size: 3
131084105 CCATTTTTTC
*
131084115 TCT TCT CCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC- TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
131084162 TCT T
1 TCT T
131084166 ATTTTACTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:131092634 original size:13 final size:14
Alignment explanation
Indices: 131092604--131092636 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
131092594 TCAAAAAATT
*
131092604 ATATTTTCTTTTAA
1 ATATTTTCTTTAAA
131092618 ATATTTT-TTTAAA
1 ATATTTTCTTTAAA
131092631 ATATTT
1 ATATTT
131092637 CATCAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (14 bp):
ATATTTTCTTTAAA
Found at i:131094424 original size:23 final size:22
Alignment explanation
Indices: 131094376--131094419 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
131094366 GACTCATATG
**
131094376 TTAGCTTTGTTTGTGTGTAAGT
1 TTAGCTTTGTTTGTGTACAAGT
131094398 TTAGCTTTGTTT-TGTACAAGT
1 TTAGCTTTGTTTGTGTACAAGT
131094419 T
1 T
131094420 ATTAGTAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.16, C:0.07, G:0.23, T:0.55
Consensus pattern (22 bp):
TTAGCTTTGTTTGTGTACAAGT
Found at i:131095519 original size:13 final size:13
Alignment explanation
Indices: 131095503--131095533 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
131095493 GCTGTTTATT
131095503 TACTTTGTTAAGC
1 TACTTTGTTAAGC
*
131095516 TACTTTGTTAAGG
1 TACTTTGTTAAGC
131095529 TACTT
1 TACTT
131095534 AGTTGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.48
Consensus pattern (13 bp):
TACTTTGTTAAGC
Found at i:131097466 original size:72 final size:72
Alignment explanation
Indices: 131097370--131097512 Score: 180
Period size: 72 Copynumber: 2.0 Consensus size: 72
131097360 GGGCTTGTAT
* ** * *
131097370 TTTGCTGCTCGCAACTATACACCTTTGACAGGCTCACTTTTTTGCTTACTGTCTTCAACAGGTGT
1 TTTGCTGCTCGCAACTATAAACCTTTGACAGGCTCACACTTTGGCTTACTATCTTCAACAGGTGT
131097435 CTTCAAC
66 CTTCAAC
* * ***
131097442 TTTGCTGCTTGCAA-TCATAAACCTTTGACAGGCTCGCACTTTGGCTTACTATCTTCAGTTGGTG
1 TTTGCTGCTCGCAACT-ATAAACCTTTGACAGGCTCACACTTTGGCTTACTATCTTCAACAGGTG
131097506 TCTTCAA
65 TCTTCAA
131097513 TAGGCCCGCA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
71 1 0.02
72 59 0.98
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (72 bp):
TTTGCTGCTCGCAACTATAAACCTTTGACAGGCTCACACTTTGGCTTACTATCTTCAACAGGTGT
CTTCAAC
Found at i:131097564 original size:26 final size:26
Alignment explanation
Indices: 131097534--131097584 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
131097524 CTATCACTTC
131097534 TTGCTAAGCTTACAACTTACACATTT
1 TTGCTAAGCTTACAACTTACACATTT
* * * *
131097560 TTGCTGAGCTTGCAGCTTGCACATT
1 TTGCTAAGCTTACAACTTACACATT
131097585 GGAAAGCTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (26 bp):
TTGCTAAGCTTACAACTTACACATTT
Found at i:131104356 original size:22 final size:23
Alignment explanation
Indices: 131104324--131104368 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
131104314 TATAAAAGTG
131104324 TAAAATAAAATATATAA-AAAACC
1 TAAAATAAAATA-ATAATAAAACC
131104347 TAAAAT-AAATAATAATAAAACC
1 TAAAATAAAATAATAATAAAACC
131104369 ATTTTAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 11 0.52
23 6 0.29
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.22
Consensus pattern (23 bp):
TAAAATAAAATAATAATAAAACC
Found at i:131104652 original size:27 final size:26
Alignment explanation
Indices: 131104601--131104708 Score: 92
Period size: 27 Copynumber: 4.0 Consensus size: 26
131104591 GTATAAAAGC
* *
131104601 TTAAGATAAATAATATGTGGAAAAAGAACT
1 TTAAAATAAATAATATAT--AAAAA-AA-T
**
131104631 TTAAAATAAATAATATATAAAAAGGTT
1 TTAAAATAAATAATATATAAAAA-AAT
* *
131104658 TTAACATAAATAATATATAAAAAAAA
1 TTAAAATAAATAATATATAAAAAAAT
* *
131104684 TTAAAATGAATAATA-ATAATAAAAT
1 TTAAAATAAATAATATATAAAAAAAT
131104709 AGTTTTTTTA
Statistics
Matches: 66, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
25 8 0.12
26 13 0.20
27 23 0.35
28 6 0.09
30 16 0.24
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (26 bp):
TTAAAATAAATAATATATAAAAAAAT
Found at i:131122761 original size:28 final size:28
Alignment explanation
Indices: 131122721--131122780 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
131122711 CCAATGATCC
131122721 CCATCACATCTTTGTCCACGATGCAGCT
1 CCATCACATCTTTGTCCACGATGCAGCT
131122749 CCATCACATCTTTGTCCACGATGCAGCT
1 CCATCACATCTTTGTCCACGATGCAGCT
131122777 CCAT
1 CCAT
131122781 ACTTGTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.22, C:0.37, G:0.13, T:0.28
Consensus pattern (28 bp):
CCATCACATCTTTGTCCACGATGCAGCT
Found at i:131134221 original size:18 final size:18
Alignment explanation
Indices: 131134171--131134228 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
131134161 TTTGTATACT
*
131134171 TTTACATATTATTAATGTATT
1 TTTACATATT-TT-AT-TATG
*
131134192 TTTATA-ATTTTATTATG
1 TTTACATATTTTATTATG
*
131134209 TTTACATATTTTATTGTG
1 TTTACATATTTTATTATG
131134227 TT
1 TT
131134229 ATATTATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 8 0.25
18 14 0.44
19 2 0.06
20 3 0.09
21 5 0.16
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (18 bp):
TTTACATATTTTATTATG
Found at i:131141916 original size:26 final size:26
Alignment explanation
Indices: 131141879--131142014 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
131141869 TGATACAAAT
* *
131141879 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131141905 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* * *
131141931 TGATAATAGATTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131141957 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131141983 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131142009 TGATAA
1 TGATAA
131142015 GAATATCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:131144041 original size:136 final size:136
Alignment explanation
Indices: 131143797--131144081 Score: 516
Period size: 136 Copynumber: 2.1 Consensus size: 136
131143787 GAGTAGTCTC
*
131143797 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATACT
131143862 GTTATCTAAATAAGGGGCGAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTAAATAAGGGGCGAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
131143927 CTGTTA
131 CTGTTA
*
131143933 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATAGGTCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATACT
* *
131143998 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTAAATAAGGGGCGAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
131144063 CTGTTA
131 CTGTTA
**
131144069 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131144082 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
136 143 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATAGGCCTATGGGCCATACT
GTTATCTAAATAAGGGGCGAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:131146149 original size:22 final size:23
Alignment explanation
Indices: 131146124--131146166 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
131146114 CCGGAGCTCC
131146124 CTCCCTCTC-CCCTTTCTTTTCT
1 CTCCCTCTCTCCCTTTCTTTTCT
* *
131146146 CTCCCTTTCTCTCTTTCTTTT
1 CTCCCTCTCTCCCTTTCTTTT
131146167 TTTTCTTTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (23 bp):
CTCCCTCTCTCCCTTTCTTTTCT
Found at i:131146608 original size:3 final size:3
Alignment explanation
Indices: 131146600--131146657 Score: 80
Period size: 3 Copynumber: 19.0 Consensus size: 3
131146590 TTTTTCTTAT
* *
131146600 TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
131146648 CTA TATA TTA
1 TTA T-TA TTA
131146658 GTATACGTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
3 45 0.94
4 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:131146718 original size:26 final size:27
Alignment explanation
Indices: 131146685--131146800 Score: 64
Period size: 26 Copynumber: 4.3 Consensus size: 27
131146675 GTGAATATTG
*
131146685 TATA-TATTCATA-TATAATATTATTTT
1 TATATTATT-ATATTATAATATTATTAT
* *
131146711 TA-ATTATTGTATTTTAATATTATTAT
1 TATATTATTATATTATAATATTATTAT
* **
131146737 TATATTATATATACTTCTTCGTATT-TTAT
1 TATATTAT-TATA-TT-ATAATATTATTAT
*
131146766 TATTATTATTAGTATTAT--TATCATTAT
1 TA-TATTATTA-TATTATAATATTATTAT
131146793 TCATATTA
1 T-ATATTA
131146801 GCATATGCGT
Statistics
Matches: 72, Mismatches: 8, Indels: 19
0.73 0.08 0.19
Matches are distributed among these distances:
25 3 0.04
26 23 0.32
27 15 0.21
28 5 0.07
29 12 0.17
30 14 0.19
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.59
Consensus pattern (27 bp):
TATATTATTATATTATAATATTATTAT
Found at i:131146736 original size:3 final size:3
Alignment explanation
Indices: 131146702--131146793 Score: 50
Period size: 3 Copynumber: 31.3 Consensus size: 3
131146692 TCATATATAA
* * *
131146702 TAT TAT TTT TAAT TAT T-G TAT T-T TAA TAT TAT TAT TA- TAT TA-
1 TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * *
131146744 TAT ATACT TCT TCG TAT T-T TAT TAT TAT TAT TAG TAT TAT TAT CAT
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
131146790 TAT T
1 TAT T
131146794 CATATTAGCA
Statistics
Matches: 67, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
2 9 0.13
3 52 0.78
4 5 0.07
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:131146873 original size:26 final size:29
Alignment explanation
Indices: 131146842--131146900 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
131146832 TTTCATATAG
131146842 TATTAT-CT-TTTT-ACTATTA-TATTTAT
1 TATTATCCTATTTTCACTATTATTA-TTAT
131146868 TATTATCCTATTTTCACTATTATTATTAT
1 TATTATCCTATTTTCACTATTATTATTAT
131146897 TATT
1 TATT
131146901 TTCATCATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 4 0.14
29 15 0.52
30 2 0.07
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (29 bp):
TATTATCCTATTTTCACTATTATTATTAT
Found at i:131146902 original size:21 final size:22
Alignment explanation
Indices: 131146864--131146914 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 22
131146854 ACTATTATAT
131146864 TTATTATTATCCTATTTTCA-CTA
1 TTATTATTAT-CTATTTTCATC-A
131146887 TTATTATTAT-TATTTTCATCA
1 TTATTATTATCTATTTTCATCA
131146908 TTATTAT
1 TTATTAT
131146915 ACATATATGC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 16 0.59
22 1 0.04
23 10 0.37
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.61
Consensus pattern (22 bp):
TTATTATTATCTATTTTCATCA
Found at i:131148245 original size:14 final size:14
Alignment explanation
Indices: 131148228--131148263 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
131148218 TAATAAATTT
*
131148228 ATTTTATATACATC
1 ATTTTAAATACATC
*
131148242 ATTTTAAATAGATC
1 ATTTTAAATACATC
131148256 ATTTTAAA
1 ATTTTAAA
131148264 ATGTGACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (14 bp):
ATTTTAAATACATC
Found at i:131148721 original size:25 final size:27
Alignment explanation
Indices: 131148679--131148728 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
131148669 AAATAATTAA
131148679 AAAATAAAATTTTAAATATAAATAACT
1 AAAATAAAATTTTAAATATAAATAACT
*
131148706 AAAATATAA-TTT-AATATAAATAA
1 AAAATAAAATTTTAAATATAAATAA
131148729 AAGTAACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 11 0.50
26 3 0.14
27 8 0.36
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (27 bp):
AAAATAAAATTTTAAATATAAATAACT
Found at i:131150486 original size:29 final size:29
Alignment explanation
Indices: 131150444--131150499 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
131150434 ATAGTGATCA
*
131150444 GATCAAATTAGTCCATCTACTATTAAATG
1 GATCAAATTAGTCCATATACTATTAAATG
* *
131150473 GATCAATTTAGTCCCTATACTATTAAA
1 GATCAAATTAGTCCATATACTATTAAA
131150500 AAAATTATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.36
Consensus pattern (29 bp):
GATCAAATTAGTCCATATACTATTAAATG
Found at i:131153293 original size:16 final size:17
Alignment explanation
Indices: 131153272--131153306 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
131153262 ATAAATATAT
131153272 AATAAA-ATATTAAAAA
1 AATAAATATATTAAAAA
*
131153288 AATAAATATTTTAAAAA
1 AATAAATATATTAAAAA
131153305 AA
1 AA
131153307 AGACACATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAATATATTAAAAA
Found at i:131155914 original size:26 final size:26
Alignment explanation
Indices: 131155877--131156012 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131155867 TGATACAAAT
* *
131155877 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131155903 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
131155929 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131155955 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131155981 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131156007 TGATAA
1 TGATAA
131156013 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:131157517 original size:25 final size:26
Alignment explanation
Indices: 131157476--131157527 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
131157466 TTTACAGTTT
131157476 TACCCCTAGGTGAAAATT-ACCGAAA
1 TACCCCTAGGTGAAAATTGACCGAAA
* *
131157501 TACCCCTAGG-GTTAAATTGACCTAAA
1 TACCCCTAGGTG-AAAATTGACCGAAA
131157527 T
1 T
131157528 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 1 0.04
25 15 0.65
26 7 0.30
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGTGAAAATTGACCGAAA
Found at i:131158016 original size:134 final size:137
Alignment explanation
Indices: 131157775--131158058 Score: 520
Period size: 134 Copynumber: 2.1 Consensus size: 137
131157765 GAGTAGTCTC
131157775 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131157840 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTA-C
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131157903 ACTGTTA
131 ACTGTTA
*
131157910 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131157974 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131158039 ACTGTTA
131 ACTGTTA
**
131158046 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131158059 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
134 95 0.66
135 30 0.21
136 19 0.13
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131161800 original size:26 final size:26
Alignment explanation
Indices: 131161763--131161872 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
131161753 TGATACAAAT
* *
131161763 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
131161789 TGATAATGGGTTAGGTAAATATTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131161815 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
131161841 TAATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131161867 TGATAA
1 TGATAA
131161873 GAATTTCATG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:131163873 original size:136 final size:137
Alignment explanation
Indices: 131163628--131163913 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
131163618 GAGTAGTCTC
131163628 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
131163693 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131163758 ACTGTTA
131 ACTGTTA
*
131163765 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131163829 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131163894 ACTGTTA
131 ACTGTTA
**
131163901 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131163914 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 124 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131165758 original size:69 final size:71
Alignment explanation
Indices: 131165643--131165786 Score: 238
Period size: 69 Copynumber: 2.1 Consensus size: 71
131165633 AAAAAGTTCT
*
131165643 CTCTCTCTCTCAATCAATTTTCAGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCT
1 CTCTCTCTCTCAATCAATTCTCAGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCT
131165708 TTGGAC
66 TTGGAC
* * *
131165714 CTCTCT-TCT-AATCAGTTCTCTGGAAATATATCTGCCCTTCAGAGCCTAACATTGCTTGAATCT
1 CTCTCTCTCTCAATCAATTCTCAGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCT
131165777 TTGGAC
66 TTGGAC
131165783 CTCT
1 CTCT
131165787 AACATTGCTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 60 0.87
70 3 0.04
71 6 0.09
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.36
Consensus pattern (71 bp):
CTCTCTCTCTCAATCAATTCTCAGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCT
TTGGAC
Done.