Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 428 of 433
Found at i:131345314 original size:69 final size:69
Alignment explanation
Indices: 131345199--131345388 Score: 249
Period size: 69 Copynumber: 2.8 Consensus size: 69
131345189 AATATTATCT
* ** * *
131345199 CTCTCTTAC-AATCAATAT-TCCGGAAATATATCTATCCTTCAAAGCCTAACATTTCTTGAATCT
1 CTCTCTT-CTAATCAAT-TCTCTGGAAATATATCTGCCCTTCAAAGCCTAACATTGCTTGAATAT
131345262 TTAGAC
64 TTAGAC
* * *
131345268 CTCTCTTCTAATCAATTCTTTGGAAATATATCTGCCCTTCAGAGCCTAACGTTGCTTGAATATTT
1 CTCTCTTCTAATCAATTCTCTGGAAATATATCTGCCCTTCAAAGCCTAACATTGCTTGAATATTT
*
131345333 GGAC
66 AGAC
* *
131345337 CTCTCTTCTAATCAATTCTCTGGAAATATATCTGCCCTTGAAAGTCTAACAT
1 CTCTCTTCTAATCAATTCTCTGGAAATATATCTGCCCTTCAAAGCCTAACAT
131345389 CACTCCGATC
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
68 2 0.02
69 103 0.98
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37
Consensus pattern (69 bp):
CTCTCTTCTAATCAATTCTCTGGAAATATATCTGCCCTTCAAAGCCTAACATTGCTTGAATATTT
AGAC
Found at i:131349028 original size:18 final size:17
Alignment explanation
Indices: 131348990--131349046 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 17
131348980 AAAATTCGAA
*
131348990 ATAAATTAAAATAATA-
1 ATAAATAAAAATAATAT
131349006 A-AAATAAAAATAATAT
1 ATAAATAAAAATAATAT
131349022 ATGAAAT---AATAATAT
1 AT-AAATAAAAATAATAT
131349037 ATAAATAAAA
1 ATAAATAAAA
131349047 TTTCAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
14 4 0.12
15 23 0.68
16 2 0.06
17 1 0.03
18 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (17 bp):
ATAAATAAAAATAATAT
Found at i:131349032 original size:15 final size:14
Alignment explanation
Indices: 131348998--131349044 Score: 62
Period size: 15 Copynumber: 3.4 Consensus size: 14
131348988 AAATAAATTA
*
131348998 AAATAATAA-AAAT
1 AAATAATAATATAT
131349011 AAA-AATAATATAT
1 AAATAATAATATAT
131349024 GAAATAATAATATAT
1 -AAATAATAATATAT
131349039 AAATAA
1 AAATAA
131349045 AATTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 5 0.17
13 6 0.20
14 9 0.30
15 10 0.33
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (14 bp):
AAATAATAATATAT
Found at i:131349376 original size:2 final size:2
Alignment explanation
Indices: 131349369--131349414 Score: 60
Period size: 2 Copynumber: 23.5 Consensus size: 2
131349359 ATACCAAACA
*
131349369 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GA- AT AA AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
131349410 AT AT A
1 AT AT A
131349415 AAATACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
1 2 0.05
2 36 0.92
3 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (2 bp):
AT
Found at i:131349584 original size:18 final size:19
Alignment explanation
Indices: 131349558--131349593 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
131349548 AATCAGGGAC
*
131349558 AAATTTGAGAT-TAAAAAA
1 AAATCTGAGATCTAAAAAA
131349576 AAATCTGAGATCTAAAAA
1 AAATCTGAGATCTAAAAA
131349594 CTAAACATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.58, C:0.06, G:0.11, T:0.25
Consensus pattern (19 bp):
AAATCTGAGATCTAAAAAA
Found at i:131349884 original size:25 final size:27
Alignment explanation
Indices: 131349837--131349888 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
131349827 ATGCCCGGAC
131349837 TTCCAAACCACCATGCTGCTTTACTTT
1 TTCCAAACCACCATGCTGCTTTACTTT
*
131349864 TTCCAAA-C-CCATGCTGTTTTACTTT
1 TTCCAAACCACCATGCTGCTTTACTTT
131349889 ACTATTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 16 0.67
26 1 0.04
27 7 0.29
ACGTcount: A:0.21, C:0.31, G:0.08, T:0.40
Consensus pattern (27 bp):
TTCCAAACCACCATGCTGCTTTACTTT
Found at i:131350111 original size:24 final size:25
Alignment explanation
Indices: 131350060--131350111 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
131350050 AATTAAACAT
*
131350060 ATTTTATATAAATAGCAATTAATTA
1 ATTTTATATAAATAGCAATTAATGA
131350085 ATTTTATATAAA-A-CAATTTAATGA
1 ATTTTATATAAATAGCAA-TTAATGA
131350109 ATT
1 ATT
131350112 CATCTCAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 3 0.12
24 10 0.40
25 12 0.48
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (25 bp):
ATTTTATATAAATAGCAATTAATGA
Found at i:131351303 original size:26 final size:26
Alignment explanation
Indices: 131351268--131351403 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
131351258 TGATACAAAT
131351268 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
131351294 TAATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* * *
131351320 TAATAATAGGTTAGGTAAGTGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
131351346 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
131351372 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
131351398 TGATAA
1 TGATAA
131351404 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:131353434 original size:136 final size:137
Alignment explanation
Indices: 131353189--131353474 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
131353179 GAGTAGTCTC
131353189 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
131353254 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131353319 ACTGTTA
131 ACTGTTA
131353326 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131353390 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131353455 ACTGTTA
131 ACTGTTA
**
131353462 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131353475 AGCCCAATGG
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 125 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131354715 original size:12 final size:12
Alignment explanation
Indices: 131354698--131354739 Score: 77
Period size: 12 Copynumber: 3.6 Consensus size: 12
131354688 ACTCGGGGAA
131354698 GAGGCCGTGGTC
1 GAGGCCGTGGTC
131354710 GAGGCCGTGGTC
1 GAGGCCGTGGTC
131354722 GAGGCCGTGGTC
1 GAGGCCGTGGTC
131354734 -AGGCCG
1 GAGGCCG
131354740 AGGTAGTACT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 6 0.20
12 24 0.80
ACGTcount: A:0.10, C:0.26, G:0.50, T:0.14
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:131359644 original size:19 final size:19
Alignment explanation
Indices: 131359620--131359660 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
131359610 CAAATTGATA
131359620 ATAGGTTAGGTAAATG-TTC
1 ATAGGTTAGGT-AATGTTTC
131359639 ATAGGTTAGGTAATGTTTC
1 ATAGGTTAGGTAATGTTTC
131359658 ATA
1 ATA
131359661 ATAATAGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (19 bp):
ATAGGTTAGGTAATGTTTC
Found at i:131359668 original size:25 final size:25
Alignment explanation
Indices: 131359642--131359739 Score: 146
Period size: 25 Copynumber: 4.0 Consensus size: 25
131359632 AATGTTCATA
* *
131359642 GGTTAGGT-AATGTTTCATAATAAT
1 GGTTAGGTAAATGTTCCATGATAAT
131359666 AGGTTAGGT-AATGTTCCATGATAAT
1 -GGTTAGGTAAATGTTCCATGATAAT
131359691 GGTTAGGTAAATGTTCCATGATAAT
1 GGTTAGGTAAATGTTCCATGATAAT
*
131359716 GGTTAGGTAAATGTTTCATGATAA
1 GGTTAGGTAAATGTTCCATGATAA
131359740 GAATTTCATG
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
24 8 0.12
25 61 0.88
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (25 bp):
GGTTAGGTAAATGTTCCATGATAAT
Found at i:131359729 original size:50 final size:48
Alignment explanation
Indices: 131359615--131359740 Score: 156
Period size: 50 Copynumber: 2.7 Consensus size: 48
131359605 TGATACAAAT
*
131359615 TGATAATAGGTTAGGTAAATGTTC---AT-AGGTTAGGTAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCATGATAAGGTTAGGTAATGTTCCA
*
131359659 TAATAATAGGTTAGGT-AATGTTCCATGATAATGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CATGATAA-GGTTAGGT-AATGTTCCA
131359709 TGATAAT-GGTTAGGTAAATGTTTCATGATAAG
1 TGATAATAGGTTAGGTAAATG-TTCATGATAAG
131359741 AATTTCATGT
Statistics
Matches: 70, Mismatches: 3, Indels: 13
0.81 0.03 0.15
Matches are distributed among these distances:
43 6 0.09
44 16 0.23
47 2 0.03
48 1 0.01
49 17 0.24
50 26 0.37
51 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (48 bp):
TGATAATAGGTTAGGTAAATGTTCATGATAAGGTTAGGTAATGTTCCA
Found at i:131361774 original size:136 final size:137
Alignment explanation
Indices: 131361529--131361814 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
131361519 GAGTAGTCTC
131361529 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
131361594 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131361659 ACTGTTA
131 ACTGTTA
131361666 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131361730 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131361795 ACTGTTA
131 ACTGTTA
**
131361802 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131361815 AGCCCAATGG
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 125 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131364032 original size:2 final size:2
Alignment explanation
Indices: 131364027--131364052 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
131364017 ACACACACAC
131364027 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
131364053 TAAATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:131364103 original size:9 final size:9
Alignment explanation
Indices: 131364089--131364142 Score: 58
Period size: 9 Copynumber: 5.8 Consensus size: 9
131364079 ATTTTTTTAA
131364089 ATATTATAT
1 ATATTATAT
131364098 ATATTATAT
1 ATATTATAT
131364107 -TATGTATAT
1 ATAT-TATAT
131364116 AT-TTAATAT
1 ATATT-ATAT
131364125 ATTATGTATAT
1 A-TAT-TATAT
131364136 ATATTAT
1 ATATTAT
131364143 GTACATACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
8 4 0.10
9 23 0.59
10 5 0.13
11 6 0.15
12 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (9 bp):
ATATTATAT
Found at i:131364121 original size:33 final size:32
Alignment explanation
Indices: 131364027--131364162 Score: 109
Period size: 33 Copynumber: 4.1 Consensus size: 32
131364017 ACACACACAC
*
131364027 ATATATATATATATATATATATATATT-AA-ATT
1 ATATATATATAT-TATGTATATAT-TTAAATATT
*
131364059 A-ATAT-TATATTATGCGTATTATTTTTTTAAATATT
1 ATATATATATATTAT--GTA-TA--TATTTAAATATT
131364094 ATATATATTATATTATGTATATATTTAATATATT
1 ATATATA-TATATTATGTATATATTTAA-ATATT
* * *
131364128 ATGTATATATATTATGTACATACTTTTAATATT
1 ATATATATATATTATGTATATA-TTTAAATATT
131364161 AT
1 AT
131364163 TATGTATTCT
Statistics
Matches: 86, Mismatches: 6, Indels: 23
0.75 0.05 0.20
Matches are distributed among these distances:
29 3 0.03
30 5 0.06
31 6 0.07
32 3 0.03
33 29 0.34
34 19 0.22
35 6 0.07
36 7 0.08
38 8 0.09
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (32 bp):
ATATATATATATTATGTATATATTTAAATATT
Found at i:131364186 original size:23 final size:24
Alignment explanation
Indices: 131364131--131364188 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
131364121 ATATATTATG
*
131364131 TATATATATTATGTACATACTTTTA
1 TATATATATTATGTA-ATACTTTAA
*
131364156 -ATAT-TATTATGT-ATTCTTTAA
1 TATATATATTATGTAATACTTTAA
131364177 TATATATATTAT
1 TATATATATTAT
131364189 ATTATGTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 7 0.24
22 4 0.14
23 14 0.48
24 4 0.14
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.55
Consensus pattern (24 bp):
TATATATATTATGTAATACTTTAA
Found at i:131364231 original size:11 final size:13
Alignment explanation
Indices: 131364215--131364363 Score: 51
Period size: 11 Copynumber: 12.3 Consensus size: 13
131364205 AATAGTTGTT
131364215 TTTTAT-TAT-TA
1 TTTTATATATATA
131364226 TTTTATATATATA
1 TTTTATATATATA
*
131364239 -TTTATGTCA-ATA
1 TTTTATAT-ATATA
131364251 TTTTA-ATACTATA
1 TTTTATATA-TATA
** *
131364264 --TTACGTATACA
1 TTTTATATATATA
131364275 TTTTATATAT-TA
1 TTTTATATATATA
** *
131364287 -CGTATATATCT-
1 TTTTATATATATA
*
131364298 TTTTA-ATAT-TG
1 TTTTATATATATA
131364309 TATTT-TATATATA
1 T-TTTATATATATA
*
131364322 TGTTATATATATA
1 TTTTATATATATA
131364335 TCTTTA-ATACTATA
1 T-TTTATATA-TATA
*
131364349 --TTATCTATATA
1 TTTTATATATATA
131364360 TTTT
1 TTTT
131364364 CTATTTCTCA
Statistics
Matches: 102, Mismatches: 15, Indels: 40
0.65 0.10 0.25
Matches are distributed among these distances:
10 1 0.01
11 32 0.31
12 30 0.29
13 32 0.31
14 7 0.07
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (13 bp):
TTTTATATATATA
Found at i:131364661 original size:17 final size:15
Alignment explanation
Indices: 131364622--131364658 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
131364612 ATGTTCATTT
131364622 TATATATTATGTATA
1 TATATATTATGTATA
* *
131364637 CATATATTATGTAAA
1 TATATATTATGTATA
131364652 TATATAT
1 TATATAT
131364659 ATTTAGTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (15 bp):
TATATATTATGTATA
Found at i:131366896 original size:16 final size:14
Alignment explanation
Indices: 131366870--131367143 Score: 91
Period size: 15 Copynumber: 18.4 Consensus size: 14
131366860 TATTTTTATG
*
131366870 TTATATATTATATAA
1 TTATTTATTATAT-A
131366885 TTACTTTATTATATA
1 TTA-TTTATTATATA
131366900 TTATTTA-TATTATTA
1 TTATTTATTA-TA-TA
*
131366915 TTATTCATTATATA
1 TTATTTATTATATA
** *
131366929 TTACTTTTCACAAAATA
1 TTA--TTT-ATTATATA
*
131366946 TTATTATTTTACATTATA
1 TTATT-TATT--A-TATA
*
131366964 TT-TTTACTTGTATTA
1 TTATTTA-TTATA-TA
131366979 TATATTTATTA-ATTA
1 T-TATTTATTATA-TA
*
131366994 TTTATATATTATATA
1 -TTATTTATTATATA
*
131367009 TTATTT-TTACATA
1 TTATTTATTATATA
*
131367022 TT-TATTAAT-TAT-
1 TTAT-TTATTATATA
*
131367034 TTATATATTATATA
1 TTATTTATTATATA
*
131367048 TTATTT-TTACATA
1 TTATTTATTATATA
131367061 TATACTTTCATATTATATA
1 T-TA--TT--TATTATATA
*
131367080 TTATAATTATTTTATA
1 TTAT--TTATTATATA
*
131367096 TTATGTTATTTTTATA
1 TTAT-TTA-TTATATA
*
131367112 CTA-TTA-TATATA
1 TTATTTATTATATA
*
131367124 TTTTTTATCTATATA
1 TTATTTAT-TATATA
131367139 TTATT
1 TTATT
131367144 ATCATTAAAG
Statistics
Matches: 195, Mismatches: 30, Indels: 68
0.67 0.10 0.23
Matches are distributed among these distances:
12 12 0.06
13 28 0.14
14 29 0.15
15 49 0.25
16 44 0.23
17 17 0.09
18 9 0.05
19 7 0.04
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.60
Consensus pattern (14 bp):
TTATTTATTATATA
Found at i:131366984 original size:37 final size:36
Alignment explanation
Indices: 131366901--131366995 Score: 86
Period size: 37 Copynumber: 2.6 Consensus size: 36
131366891 TATTATATAT
*
131366901 TATT-TATATTATTATTATTCATTATATATTACTTT
1 TATTATATATTATTATTATTCATTATATATTACTTG
** * *
131366936 TCACAAAATATTATTATT-TTACATTATATTTTTACTTG
1 T-ATTATATATTATTATTATT-CATTATA-TATTACTTG
131366974 TATTATATATTTATTAATTATT
1 TATTATATA-TTATT-ATTATT
131366996 TATATATTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
35 1 0.02
36 3 0.07
37 23 0.51
38 13 0.29
39 3 0.07
40 2 0.04
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.59
Consensus pattern (36 bp):
TATTATATATTATTATTATTCATTATATATTACTTG
Found at i:131367027 original size:39 final size:39
Alignment explanation
Indices: 131366980--131367128 Score: 172
Period size: 39 Copynumber: 3.9 Consensus size: 39
131366970 CTTGTATTAT
131366980 ATATTTATTAATTATTTATATATTATATATTATTTTTAC
1 ATATTTATTAATTATTTATATATTATATATTATTTTTAC
131367019 ATATTTATTAATTATTTATATATTATATATTATTTTTAC
1 ATATTTATTAATTATTTATATATTATATATTATTTTTAC
* *
131367058 ATATATACTT--TCATATTATATATTATA-ATTA-TTTT--
1 ATATTTA-TTAATTAT-TTATATATTATATATTATTTTTAC
*
131367093 ATA-TTATGTTATT-TTTATACTATTATATA-TATTTTT
1 ATATTTAT-TAATTATTTATA-TATTATATATTATTTTT
131367129 TATCTATATA
Statistics
Matches: 98, Mismatches: 4, Indels: 19
0.81 0.03 0.16
Matches are distributed among these distances:
33 1 0.01
34 8 0.08
35 13 0.13
36 6 0.06
37 4 0.04
38 7 0.07
39 57 0.58
40 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (39 bp):
ATATTTATTAATTATTTATATATTATATATTATTTTTAC
Found at i:131367118 original size:24 final size:21
Alignment explanation
Indices: 131367076--131367142 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 21
131367066 TTTCATATTA
131367076 TATATTATAATTATTTTA--TAT
1 TATATTAT-ATT-TTTTATCTAT
* *
131367097 TATGTTAT-TTTTATA-CTAT
1 TATATTATATTTTTTATCTAT
131367116 TATA-TATATTTTTTATCTA-
1 TATATTATATTTTTTATCTAT
131367135 TATATTAT
1 TATATTAT
131367143 TATCATTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
18 7 0.18
19 18 0.47
20 6 0.16
21 7 0.18
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (21 bp):
TATATTATATTTTTTATCTAT
Found at i:131367128 original size:21 final size:18
Alignment explanation
Indices: 131367104--131367143 Score: 53
Period size: 21 Copynumber: 2.1 Consensus size: 18
131367094 TATTATGTTA
131367104 TTTTTATACTATTATATATAT
1 TTTTTAT-CTA-TATAT-TAT
131367125 TTTTTATCTATATATTAT
1 TTTTTATCTATATATTAT
131367143 T
1 T
131367144 ATCATTAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 3 0.16
21 7 0.37
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTATCTATATATTAT
Found at i:131367135 original size:20 final size:19
Alignment explanation
Indices: 131366976--131367143 Score: 63
Period size: 18 Copynumber: 8.9 Consensus size: 19
131366966 TTTACTTGTA
*
131366976 TTATA-TATTTATTAATTATT
1 TTATACTATATATT-ATT-TT
*
131366996 TATATATTATATATTA-TTT
1 T-TATACTATATATTATTTT
* *
131367015 TTACA-TATTTATTAATTATT
1 TTATACTATATATT-ATT-TT
*
131367035 TATATATTATATATTA-TTT
1 T-TATACTATATATTATTTT
* * *
131367054 TTACA-TATATACTT-TCATA
1 TTATACTATATA-TTAT-TTT
*
131367073 TTATA-TAT-TATAATTATT
1 TTATACTATATATTATT-TT
*
131367091 TTATA-T-TATGTTA-TTT
1 TTATACTATATATTATTTT
131367107 TTATACTATTATATATATTTT
1 TTATACTA-TATAT-TATTTT
131367128 TTAT-CTATATATTATT
1 TTATACTATATATTATT
131367144 ATCATTAAAG
Statistics
Matches: 115, Mismatches: 15, Indels: 38
0.68 0.09 0.23
Matches are distributed among these distances:
16 7 0.06
17 17 0.15
18 26 0.23
19 24 0.21
20 11 0.10
21 16 0.14
22 14 0.12
ACGTcount: A:0.35, C:0.04, G:0.01, T:0.61
Consensus pattern (19 bp):
TTATACTATATATTATTTT
Found at i:131367310 original size:21 final size:23
Alignment explanation
Indices: 131367285--131367343 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
131367275 ATCATTAATT
*
131367285 ACTTATTTTATAT-TATTCTA-A
1 ACTTATTTTATATATATTATATA
131367306 ACTTATATTTATATATATTATATA
1 ACTTAT-TTTATATATATTATATA
131367330 A-TTATTTTAT-TATA
1 ACTTATTTTATATATA
131367344 AATATAAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
21 10 0.29
22 12 0.35
23 10 0.29
24 2 0.06
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (23 bp):
ACTTATTTTATATATATTATATA
Found at i:131367686 original size:2 final size:2
Alignment explanation
Indices: 131367679--131367709 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
131367669 TATTACCTTT
131367679 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
131367710 TAAATTGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:131369177 original size:29 final size:29
Alignment explanation
Indices: 131369129--131369195 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
131369119 TTTACATAAC
* * *
131369129 AGATTTGAAAAGAAAATATATATATTAAAT
1 AGATTT-AAAAGAAAATATAAAAATAAAAT
* *
131369159 AGATTTAAAAGTAACTATAAAAATAAAAT
1 AGATTTAAAAGAAAATATAAAAATAAAAT
*
131369188 AGAATTAA
1 AGATTTAA
131369196 CAATGTATAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 25 0.81
30 6 0.19
ACGTcount: A:0.60, C:0.01, G:0.09, T:0.30
Consensus pattern (29 bp):
AGATTTAAAAGAAAATATAAAAATAAAAT
Found at i:131369297 original size:23 final size:22
Alignment explanation
Indices: 131369245--131369297 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 22
131369235 TATGTACAAT
* *
131369245 AATAATATATAAAAGTATTTTA
1 AATAATATATAAAAGAATTTAA
* *
131369267 ATTAAATATTATACAAGAATTTAA
1 AAT-AATA-TATAAAAGAATTTAA
131369291 AATAATA
1 AATAATA
131369298 CTACATAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 2 0.08
23 8 0.33
24 14 0.58
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AATAATATATAAAAGAATTTAA
Found at i:131369364 original size:3 final size:3
Alignment explanation
Indices: 131369346--131369384 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
131369336 GAAACAAATA
* *
131369346 AAT AAA AAT AAAT AAT AAT AAT AAT AAT AAT CAT AAT AA
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
131369385 AGTAATCCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:131371657 original size:25 final size:25
Alignment explanation
Indices: 131371628--131371675 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
131371618 ACGTCACTTC
*
131371628 TATATTTTTATTTCTCA-TATTATCT
1 TATATTTATATTTC-CATTATTATCT
131371653 TATATTTATATTTCCATTATTAT
1 TATATTTATATTTCCATTATTAT
131371676 ACCATATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.62
Consensus pattern (25 bp):
TATATTTATATTTCCATTATTATCT
Found at i:131372020 original size:2 final size:2
Alignment explanation
Indices: 131372013--131372051 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
131372003 TACATACATT
131372013 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
131372052 TTACGTATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:131373435 original size:22 final size:20
Alignment explanation
Indices: 131373400--131373439 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
131373390 TACAATAGAT
131373400 AAAAAAAATCAAAGAAAAGG
1 AAAAAAAATCAAAGAAAAGG
131373420 AAAATAAAATCGAAAGAAAA
1 AAAA-AAAATC-AAAGAAAA
131373440 ATGAGGCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 6 0.33
22 8 0.44
ACGTcount: A:0.75, C:0.05, G:0.12, T:0.07
Consensus pattern (20 bp):
AAAAAAAATCAAAGAAAAGG
Found at i:131374571 original size:137 final size:137
Alignment explanation
Indices: 131374325--131374611 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
131374315 TATTGGGCCT
**
131374325 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
131374390 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCTATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
131374455 CATATGC
131 CATATGC
131374462 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
131374527 AGCCCTTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
131374592 CATATGC
131 CATATGC
131374599 AAGCCCATTTGGG
1 AAGCCCATTTGGG
131374612 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:131376433 original size:26 final size:26
Alignment explanation
Indices: 131376397--131376504 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
131376387 CATGAAATTC
*
131376397 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
131376423 TTATCATGAAACATTTACCTAACCAA
1 TTATCATGAAACATTTACCTAACCTA
*
131376449 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
131376475 TTATCATG-GA-ATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
131376499 TTATCA
1 TTATCA
131376505 ATTGTATCAA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
24 20 0.26
25 1 0.01
26 57 0.73
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:131379369 original size:30 final size:30
Alignment explanation
Indices: 131379333--131379412 Score: 142
Period size: 30 Copynumber: 2.7 Consensus size: 30
131379323 ACTTTTCTCA
131379333 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
131379363 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
131379393 ACTAGCCACTCTTTTTCCAC
1 ACTAGCCACTCCTTTTCCAC
131379413 TAGCCACACC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.24, C:0.47, G:0.04, T:0.25
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:131379381 original size:18 final size:18
Alignment explanation
Indices: 131379360--131379430 Score: 73
Period size: 18 Copynumber: 4.3 Consensus size: 18
131379350 CACCACCAAC
131379360 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
*
131379378 TCCACCA-CCA-A-C---
1 TCCACTAGCCACACCTTT
* *
131379390 TCCACTAGCCACTCTTTT
1 TCCACTAGCCACACCTTT
131379408 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
131379426 TCCAC
1 TCCAC
131379431 CACCAACTCC
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
12 6 0.15
13 3 0.07
15 1 0.02
16 1 0.02
17 3 0.07
18 27 0.66
ACGTcount: A:0.23, C:0.46, G:0.04, T:0.27
Consensus pattern (18 bp):
TCCACTAGCCACACCTTT
Found at i:131379412 original size:48 final size:48
Alignment explanation
Indices: 131379360--131379460 Score: 202
Period size: 48 Copynumber: 2.1 Consensus size: 48
131379350 CACCACCAAC
131379360 TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
1 TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
131379408 TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
1 TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
131379456 TCCAC
1 TCCAC
131379461 CACCAACTCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.23, C:0.47, G:0.04, T:0.27
Consensus pattern (48 bp):
TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
Found at i:131379442 original size:30 final size:30
Alignment explanation
Indices: 131379408--131379495 Score: 149
Period size: 30 Copynumber: 2.9 Consensus size: 30
131379398 CCACTCTTTT
131379408 TCCACTAGCCACACCTTTTCCACCACCAAC
1 TCCACTAGCCACACCTTTTCCACCACCAAC
* *
131379438 TCCACTAGCCACTCTTTTTCCACCACCAAC
1 TCCACTAGCCACACCTTTTCCACCACCAAC
*
131379468 TCCACTAGCCACACCTTCTCCACCACCA
1 TCCACTAGCCACACCTTTTCCACCACCA
131379496 CTTGTACCTA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.25, C:0.50, G:0.03, T:0.22
Consensus pattern (30 bp):
TCCACTAGCCACACCTTTTCCACCACCAAC
Found at i:131379462 original size:78 final size:79
Alignment explanation
Indices: 131379324--131379479 Score: 269
Period size: 78 Copynumber: 2.0 Consensus size: 79
131379314 ACAACTTAAA
*
131379324 CTTTTCTCAACTAGCCACTCCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAA
1 CTTTTCTCAACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAA
131379389 CTCCACTAGCCACT
66 CTCCACTAGCCACT
* * *
131379403 CTTTT-TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTTTCCACCACCAA
1 CTTTTCTCAACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAA
131379467 CTCCACTAGCCAC
66 CTCCACTAGCCAC
131379480 ACCTTCTCCA
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
78 68 0.93
79 5 0.07
ACGTcount: A:0.24, C:0.47, G:0.04, T:0.26
Consensus pattern (79 bp):
CTTTTCTCAACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAA
CTCCACTAGCCACT
Found at i:131379490 original size:48 final size:48
Alignment explanation
Indices: 131379360--131379479 Score: 134
Period size: 48 Copynumber: 2.5 Consensus size: 48
131379350 CACCACCAAC
* * **
131379360 TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
1 TCCACCAGCCACACCCTAGCCACCACCAACTCCACTAGCCACTCTTTT
* * **
131379408 TCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGCCACTCTTTT
1 TCCACCAGCCACACCCTAGCCACCACCAACTCCACTAGCCACTCTTTT
*
131379456 TCCACCA-CCAACTCCACTAGCCAC
1 TCCACCAGCC-ACACC-CTAGCCAC
131379480 ACCTTCTCCA
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 2 0.03
48 58 0.89
49 5 0.08
ACGTcount: A:0.24, C:0.47, G:0.04, T:0.24
Consensus pattern (48 bp):
TCCACCAGCCACACCCTAGCCACCACCAACTCCACTAGCCACTCTTTT
Found at i:131380085 original size:25 final size:25
Alignment explanation
Indices: 131380057--131380196 Score: 85
Period size: 25 Copynumber: 5.5 Consensus size: 25
131380047 ATATTACGTA
*
131380057 TATATATATTTTATACTATTTTATG
1 TATATATATTTTATACTATATTATG
* *
131380082 TATATATCTTTAATATTA-TATGATTATA
1 TATATATATTT--TA-TACTAT-ATTATG
* *
131380110 TATATATATTTT-TAC-ATGTTATCT
1 TATATATATTTTATACTATATTAT-G
*
131380134 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATG
* *
131380160 TATGTAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATG
*
131380185 TACATAT-TTTTA
1 TATATATATTTTA
131380197 ATATTATCAC
Statistics
Matches: 90, Mismatches: 13, Indels: 25
0.70 0.10 0.20
Matches are distributed among these distances:
23 7 0.08
24 12 0.13
25 30 0.33
26 14 0.16
27 11 0.12
28 16 0.18
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATG
Found at i:131380375 original size:16 final size:15
Alignment explanation
Indices: 131380351--131380398 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
131380341 TAATTATTAT
*
131380351 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
131380367 TATTTTAATATTTTA
1 TATTTTAATATTTTA
131380382 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
131380398 T
1 T
131380399 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:131380386 original size:7 final size:8
Alignment explanation
Indices: 131380351--131380402 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
131380341 TAATTATTAT
*
131380351 TATTCTAA
1 TATTTTAA
*
131380359 TATTTTGA
1 TATTTTAA
131380367 TATTTTAA
1 TATTTTAA
131380375 TATTTT-A
1 TATTTTAA
131380382 TATTTTATA
1 TATTTTA-A
*
131380391 TATTTTAT
1 TATTTTAA
131380399 TATT
1 TATT
131380403 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:131381938 original size:12 final size:12
Alignment explanation
Indices: 131381921--131381949 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
131381911 ATTCATTTGA
131381921 CATTCATGCATT
1 CATTCATGCATT
131381933 CATTCATGCATT
1 CATTCATGCATT
131381945 CATTC
1 CATTC
131381950 GTACATTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.28, G:0.07, T:0.41
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:131390344 original size:69 final size:69
Alignment explanation
Indices: 131390171--131390344 Score: 224
Period size: 70 Copynumber: 2.5 Consensus size: 69
131390161 TTTTCAAGGG
* * *
131390171 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTTGT
131390236 TTTCA
66 TTT-A
* ** * *
131390241 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTT-TG
131390306 TTTT-
65 TTTTA
** *
131390310 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
131390345 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
69 31 0.34
70 55 0.60
71 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.34
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTTGT
TTTA
Found at i:131390445 original size:119 final size:119
Alignment explanation
Indices: 131390224--131390463 Score: 421
Period size: 119 Copynumber: 2.0 Consensus size: 119
131390214 GTTGAGGTAT
131390224 TTTTAATTTTTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTAATTTTTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAG-CTCGGGGCACGCTGA
131390289 GGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
65 GGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
*
131390344 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-TCGGGGCACGCTG
1 TTTTAA-TTTT-TTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCTG
*
131390408 AGGTA-TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTGAGCC
64 AGGTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
131390463 T
1 T
131390464 CAGGTCACGC
Statistics
Matches: 116, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
119 50 0.43
120 24 0.21
121 4 0.03
122 38 0.33
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.39
Consensus pattern (119 bp):
TTTTAATTTTTTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCTCGGGGCACGCTGAG
GTATTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:131390453 original size:66 final size:68
Alignment explanation
Indices: 131390369--131390502 Score: 200
Period size: 66 Copynumber: 2.0 Consensus size: 68
131390359 TTCAAAATCA
* *
131390369 ACTCATATTGCGAGAGGTGAGTTGAG-TCGGGGCACGCTGAGGTATTTT-AGTTTATGTTTTAAA
1 ACTCATATTGCGAGAGGTGAGTTGAGCTCAGGGCACGCTGAGGTATTTTCAATTTATGTTTTAAA
131390432 TTG
66 TTG
* * *
131390435 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCA
1 ACTCATATTGCGAGAGGTGAGTTGAG-CTCAGGGCACGCTGAGGTATTTTCAATTTATGTTTTAA
131390500 ATT
65 ATT
131390503 TACGTTGTTC
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
66 26 0.43
68 20 0.33
69 14 0.23
ACGTcount: A:0.22, C:0.14, G:0.27, T:0.37
Consensus pattern (68 bp):
ACTCATATTGCGAGAGGTGAGTTGAGCTCAGGGCACGCTGAGGTATTTTCAATTTATGTTTTAAA
TTG
Found at i:131390604 original size:139 final size:140
Alignment explanation
Indices: 131390436--131391197 Score: 1367
Period size: 139 Copynumber: 5.5 Consensus size: 140
131390426 TTTAAATTGA
131390436 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
131390501 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGT-GGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
131390565 TCAAAATCAG
131 TCAAAATCAG
131390575 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
131390640 TTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC-TTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
131390704 TCAAAATCAG
131 TCAAAATCAG
*
131390714 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAA-TT-TGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
131390777 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
131390842 TCAAAATCAG
131 TCAAAATCAG
*
131390852 CTCATATTG-AAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* *
131390916 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCGTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
131390981 TCAAAATCAG
131 TCAAAATCAG
*
131390991 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
131391056 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGT-GGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
131391120 TCAAAATCAG
131 TCAAAATCAG
131391130 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
131391194 TCAA
62 TCAA
131391198 AAAAAAATTC
Statistics
Matches: 601, Mismatches: 13, Indels: 15
0.96 0.02 0.02
Matches are distributed among these distances:
137 108 0.18
138 28 0.05
139 326 0.54
140 111 0.18
141 22 0.04
142 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:131390868 original size:276 final size:279
Alignment explanation
Indices: 131390436--131391197 Score: 1372
Period size: 276 Copynumber: 2.7 Consensus size: 279
131390426 TTTAAATTGA
131390436 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
131390501 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTT
131390566 CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTC
131 CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTC
* *
131390631 TGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATT
196 TGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCGTTTAATT
131390696 TCTAC-TTTTCAAAATCAG
261 TCTACTTTTTCAAAATCAG
*
131390714 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAA-TT-TGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
131390777 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGT-GGTTGAACCTTTTAATTTCTACTTTT
*
131390842 TCAAAATCAGCTCATATTG-AAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
130 TCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTT
*
131390906 CTGTTTTCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCGTTTAAT
195 CTGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCGTTTAAT
131390971 TTCTACTTTTTCAAAATCAG
260 TTCTACTTTTTCAAAATCAG
*
131390991 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
131391056 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTT
131391121 CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAAT
131 CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAAT
131391185 TTCTGTCTTTCAA
193 TTCTGT-TTTCAA
131391198 AAAAAAATTC
Statistics
Matches: 464, Mismatches: 11, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
276 158 0.34
277 110 0.24
278 100 0.22
279 67 0.14
281 23 0.05
282 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (279 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTT
CAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTC
TGTTTTCAATTTACATTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCGTTTAATT
TCTACTTTTTCAAAATCAG
Found at i:131391054 original size:13 final size:13
Alignment explanation
Indices: 131391036--131391069 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
131391026 CACTGAGGTA
*
131391036 TTTTCAATTTCTG
1 TTTTCAATTTATG
131391049 TTTTCAATTTATG
1 TTTTCAATTTATG
131391062 TTGTTCAA
1 TT-TTCAA
131391070 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:131391293 original size:72 final size:72
Alignment explanation
Indices: 131391117--131391341 Score: 292
Period size: 72 Copynumber: 3.0 Consensus size: 72
131391107 AATTTCTACT
* ** * * * *
131391117 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
131391180 TCAATTTCTG
63 TCAATTTCTG
131391190 TCTTTCAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
1 T-TTTC-----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTA
131391255 ATTTCAATTTCTG
60 ATTTCAATTTCTG
131391268 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
131391333 ATTTCTG
66 ATTTCTG
131391340 TT
1 TT
131391342 CAAAATGAGT
Statistics
Matches: 137, Mismatches: 7, Indels: 17
0.85 0.04 0.11
Matches are distributed among these distances:
72 69 0.50
73 1 0.01
74 4 0.03
77 4 0.03
78 24 0.18
79 4 0.03
80 30 0.22
81 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:131391380 original size:48 final size:49
Alignment explanation
Indices: 131391295--131391389 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 49
131391285 ATATTGCGAG
131391295 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
* *
131391344 AAATGAGTTGAGCCTC-AGGCACGTTGAGGTATTTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTT
131391390 TTTCAAAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 28 0.64
49 16 0.36
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
Found at i:131391430 original size:123 final size:121
Alignment explanation
Indices: 131391223--131391461 Score: 381
Period size: 123 Copynumber: 2.0 Consensus size: 121
131391213 ATATTGCGAG
*
131391223 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
*
131391288 TTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
* *
131391344 AAATGAGTTGAGCCTC-AGGCACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTC--AAAAATCAACTC
** *
131391408 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
63 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCT
131391462 ATTGTCAAAA
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
120 26 0.24
121 21 0.19
123 61 0.56
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:131391470 original size:74 final size:74
Alignment explanation
Indices: 131391347--131391535 Score: 263
Period size: 74 Copynumber: 2.5 Consensus size: 74
131391337 CTGTTCAAAA
* * *
131391347 TGAGTTGAGCCTCAGGCACGTTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATAT
1 TGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAATTTCTGATTGTCAAAAAAATCAACTCATAT
131391412 TGCGAGAGG
66 TGCGAGAGG
* *
131391421 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT-ATTGTCAAAAAAATCAACTCGTA
1 TGAGTTGAGCCTCAGG-CACGCTGAGGTATTTTCAATTTCTGATTGTCAAAAAAATCAACTCATA
*
131391485 TTGTGAGAGG
65 TTGCGAGAGG
* * *
131391495 CGAGTTAAGCCTCAGGTCCACGCCGAGGTATTTTCAATTTC
1 TGAGTTGAGCCTCAGG--CACGCTGAGGTATTTTCAATTTC
131391536 CGTTTTTCAA
Statistics
Matches: 102, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
74 59 0.58
75 43 0.42
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (74 bp):
TGAGTTGAGCCTCAGGCACGCTGAGGTATTTTCAATTTCTGATTGTCAAAAAAATCAACTCATAT
TGCGAGAGG
Found at i:131391668 original size:76 final size:77
Alignment explanation
Indices: 131391539--131391923 Score: 294
Period size: 79 Copynumber: 4.7 Consensus size: 77
131391529 CAATTTCCGT
*
131391539 TTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
1 TTTTCAATTTCT--CTTTC-AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGA
131391604 TCAC-GGCTGAGCTA
63 TCACAGGCTGAGCTA
*
131391618 TTTTCAATTTCTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGATC
** *
131391682 ACACACTGAGGTA
65 ACAGGCTGAGCTA
* * *** * * *
131391695 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGAT
1 --TTTTCAATTTCTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGAT
* *
131391760 CACATG-TCGAGGTA
64 CACAGGCT-GAGCTA
* * * * *
131391774 TTTTCAAAATCTATTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTC--AATTTCTCTTTCAAA---------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
131391839 GCCTTGGCTCAC-GTGCTGAGCTA
55 GCCTTGGATCACAG-GCTGAGCTA
* *
131391862 TTTTCAATTTCTGTTTTTTTTTTC-AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTC-------TCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
131391924 TTTTTAATTT
Statistics
Matches: 247, Mismatches: 33, Indels: 48
0.75 0.10 0.15
Matches are distributed among these distances:
75 3 0.01
76 43 0.17
77 17 0.07
78 1 0.00
79 83 0.34
80 2 0.01
83 33 0.13
86 4 0.02
88 52 0.21
89 1 0.00
92 2 0.01
93 6 0.02
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGATCA
CAGGCTGAGCTA
Found at i:131391948 original size:30 final size:30
Alignment explanation
Indices: 131391908--131391967 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
131391898 CTCATATTGC
131391908 GAGAGGTGAGTTGAG-CTTTTTAATTTCTGT
1 GAGAGGTGAGTTGAGTC-TTTTAATTTCTGT
*
131391938 GAGAGTTGAGTTGAGTCTTTTAATTTCTGT
1 GAGAGGTGAGTTGAGTCTTTTAATTTCTGT
131391968 TTTTCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.45
Consensus pattern (30 bp):
GAGAGGTGAGTTGAGTCTTTTAATTTCTGT
Found at i:131392028 original size:255 final size:249
Alignment explanation
Indices: 131391394--131392134 Score: 748
Period size: 255 Copynumber: 3.0 Consensus size: 249
131391384 TCTGTTTTTC
* * * *
131391394 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--ATTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
* * ** * * * **
131391455 AATTTCTA-TTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTT-AAGCCTCAGGTC-CACG
66 AATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGAA-CCTCAGATCACATA
* ** *** * **
131391517 CCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAAATCAACTCATATTGC
129 TCGAGGTATTTTCAAAATCTACTTTTCAAATTAAG--TTTC----AAAAAATCAACTCATATTGC
131391582 GAGAGGTGAGTTGAGCCTTGGCTCACGGCTGAGCTATTTTCAATTTC-------TCTTTCAA
188 GAGAGGTGAGTTGAGCCTTGGCTCACGGCTGAGCTATTTTCAATTTCTGTTTTTTCTTTCAA
*
131391637 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
* * * *
131391702 AATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGATCACATGT
66 AATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCAGATCACATAT
* ** *
131391767 CGAGGTATTTTCAAAATCTATTTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAG
130 CGAGGTATTTTCAAAATCTACTTTTCAAATTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGG
*
131391831 TGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTTTC-A
194 TGAGTTGAGCCTTGGCTCACG-GCTGAGCTATTTTCAATTTCTGTTTTTTCTTTCAA
* * ** * * *
131391887 AAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGTGAGAGTTGAGTTG
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC--ACACA-CTGAGGT-
* * *
131391951 AGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG
58 A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCT-CAG
* *
131392014 -TCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTCAAAAAATCAACTCATATT
121 ATCACATATCGAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAATCAACTCATATT
131392078 GCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTTCTGTTTTT
186 GCGAGAGGTGAGTTGAGCCTTGGCTCACG-GCTGAGCTATTTTCAATTTCTGTTTTT
131392135 AATATCTGTT
Statistics
Matches: 426, Mismatches: 46, Indels: 40
0.83 0.09 0.08
Matches are distributed among these distances:
243 86 0.20
244 20 0.05
245 12 0.03
247 11 0.03
248 43 0.10
249 33 0.08
250 37 0.09
251 6 0.01
252 3 0.01
253 2 0.00
254 4 0.01
255 144 0.34
256 7 0.02
257 13 0.03
258 5 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (249 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATCTTTTC
AATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAACCTCAGATCACATATC
GAGGTATTTTCAAAATCTACTTTTCAAATTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTG
AGTTGAGCCTTGGCTCACGGCTGAGCTATTTTCAATTTCTGTTTTTTCTTTCAA
Found at i:131392785 original size:30 final size:30
Alignment explanation
Indices: 131392749--131392949 Score: 307
Period size: 30 Copynumber: 6.8 Consensus size: 30
131392739 ACTTTTCTCA
* *
131392749 ACTAGCCACTCCTTTTTCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
131392779 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
131392809 ACTAGCCACA-CTTTTCCACCACCAACTCT
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
131392838 ACTAG-CACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
131392867 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
* *
131392897 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
**
131392927 ACTAGCCACACCTTCACCACCAC
1 ACTAGCCACACCTTTTCCACCAC
131392950 TTGTACCTAC
Statistics
Matches: 155, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
28 3 0.02
29 45 0.29
30 107 0.69
ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:131392861 original size:88 final size:89
Alignment explanation
Indices: 131392749--131392932 Score: 318
Period size: 88 Copynumber: 2.1 Consensus size: 89
131392739 ACTTTTCTCA
131392749 ACTAGCCACTCCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAG-CACTCCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
*
131392814 CCACAC-TTTTCCACCACCAACTCT
65 CCACACTTTTTCCACCACCAACTCC
131392838 ACTAGCACT-CTTTTTCCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
1 ACTAGCACTCCTTTTT-CACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAG
*
131392902 CCACTCTTTTTCCACCACCAACTCC
65 CCACACTTTTTCCACCACCAACTCC
131392927 ACTAGC
1 ACTAGC
131392933 CACACCTTCA
Statistics
Matches: 91, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
87 6 0.07
88 57 0.63
89 28 0.31
ACGTcount: A:0.26, C:0.47, G:0.04, T:0.24
Consensus pattern (89 bp):
ACTAGCACTCCTTTTTCACCACCAACTCCACTAGCCACACCTTTTCCACCACCAACTCCACTAGC
CACACTTTTTCCACCACCAACTCC
Found at i:131393463 original size:23 final size:23
Alignment explanation
Indices: 131393436--131393479 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
131393426 CCTTTTTTGT
131393436 TATTATTATATT-TCTTAATATTA
1 TATTA-TATATTCTCTTAATATTA
*
131393459 TATTATATATTCTTTTAATAT
1 TATTATATATTCTCTTAATAT
131393480 ATTAGGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTATATATTCTCTTAATATTA
Found at i:131393480 original size:20 final size:20
Alignment explanation
Indices: 131393439--131393483 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
131393429 TTTTTGTTAT
*
131393439 TATTATATTTCTTAATATTA
1 TATTATATTTCTTAATAATA
*
131393459 TATTATATATTCTT-TTAATA
1 TATTATAT-TTCTTAATAATA
131393479 TATTA
1 TATTA
131393484 GGTATATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTATATTTCTTAATAATA
Found at i:131393541 original size:22 final size:22
Alignment explanation
Indices: 131393512--131393575 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
131393502 TATTACGTAT
131393512 ATATATATTTATACTATTTTATG
1 ATATATATTTATA-TATTTTATG
* *
131393535 TATATATCTTTA-ATATTATATG
1 -ATATATATTTATATATTTTATG
* *
131393557 ATTTATATATATATATTTT
1 ATATATATTTATATATTTT
131393576 TACATGTTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 8 0.24
22 14 0.42
23 1 0.03
24 10 0.30
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (22 bp):
ATATATATTTATATATTTTATG
Found at i:131393564 original size:14 final size:14
Alignment explanation
Indices: 131393509--131393574 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
131393499 CTATATTACG
* *
131393509 TATATATATATTTA
1 TATATATTTATATA
*
131393523 TACTAT-TTTATGTA
1 TA-TATATTTATATA
*
131393537 TATATCTTTA-ATA
1 TATATATTTATATA
131393550 TTATATGATTTATATA
1 -TATAT-ATTTATATA
131393566 TATATATTT
1 TATATATTT
131393575 TTACATGTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
13 5 0.12
14 23 0.53
15 12 0.28
16 3 0.07
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (14 bp):
TATATATTTATATA
Found at i:131393635 original size:25 final size:25
Alignment explanation
Indices: 131393587--131393672 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
131393577 ACATGTTATC
*
131393587 TTATGTATATA-TCTT-A-ACTATA
1 TTATGTATATATTTTTAACACTATA
*
131393609 TTATGTATGTATTTTTAACACTATA
1 TTATGTATATATTTTTAACACTATA
* *
131393634 TTATGTACATATTTTTAATA-T-TA
1 TTATGTATATATTTTTAACACTATA
* *
131393657 TCATGTATTTATTTTT
1 TTATGTATATATTTTT
131393673 TTTATATATG
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 10 0.19
23 18 0.34
24 2 0.04
25 23 0.43
ACGTcount: A:0.31, C:0.07, G:0.06, T:0.56
Consensus pattern (25 bp):
TTATGTATATATTTTTAACACTATA
Found at i:131393832 original size:16 final size:15
Alignment explanation
Indices: 131393808--131393855 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
131393798 TAATTATTAT
*
131393808 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
131393824 TATTTTAATATTTTA
1 TATTTTAATATTTTA
131393839 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
131393855 T
1 T
131393856 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:131393843 original size:7 final size:8
Alignment explanation
Indices: 131393808--131393859 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
131393798 TAATTATTAT
*
131393808 TATTCTAA
1 TATTTTAA
*
131393816 TATTTTGA
1 TATTTTAA
131393824 TATTTTAA
1 TATTTTAA
131393832 TATTTT-A
1 TATTTTAA
131393839 TATTTTATA
1 TATTTTA-A
*
131393848 TATTTTAT
1 TATTTTAA
131393856 TATT
1 TATT
131393860 CACATCATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:131395603 original size:64 final size:64
Alignment explanation
Indices: 131395530--131395740 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
131395520 CTGGGCCAGA
*
131395530 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
131395594 GCCCATTTCAAAATAC-ATGCAACATCAGTATACATATGCAAGCCC--ATTTGGGTAACAGTGGT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA---GT
* *
131395656 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
131395667 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
131395731 GCCCATTTCA
1 GCCCATTTCA
131395741 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 25 0.24
65 5 0.05
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 5 0.05
73 16 0.16
74 9 0.09
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:131395742 original size:137 final size:137
Alignment explanation
Indices: 131395496--131395782 Score: 547
Period size: 137 Copynumber: 2.1 Consensus size: 137
131395486 TATTGGGCCT
**
131395496 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
131395561 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTATA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
131395626 CATATGC
131 CATATGC
131395633 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
131395698 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
131395763 CATATGC
131 CATATGC
131395770 AAGCCCATTTGGG
1 AAGCCCATTTGGG
131395783 GACACTACCC
Statistics
Matches: 147, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 147 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:131397594 original size:26 final size:26
Alignment explanation
Indices: 131397556--131397639 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
131397546 CATGAAATTC
* *
131397556 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
131397582 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
131397608 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
131397634 TTATCA
1 TTATCA
131397640 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:131398842 original size:21 final size:21
Alignment explanation
Indices: 131398797--131398843 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
131398787 TATTAATACT
* * *
131398797 TTATTATTATAATTATTATTG
1 TTATTATTATAACTATCATTA
*
131398818 TTATTATTATAACTATCGTTA
1 TTATTATTATAACTATCATTA
131398839 TTATT
1 TTATT
131398844 GCTATCATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTATAACTATCATTA
Found at i:131398843 original size:3 final size:3
Alignment explanation
Indices: 131398732--131398827 Score: 72
Period size: 3 Copynumber: 32.7 Consensus size: 3
131398722 TGTCGCTACA
* * * *
131398732 ATT ATT ATT ATT ATT ATT -TT ACT ATT ACT ATCT AAT A-T ATT GTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
* * * * * *
131398776 ATT ATC ACT ATT ATT AAT ACT -TT ATT ATT ATA ATT ATT ATT GTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
131398823 ATT AT
1 ATT AT
131398828 AACTATCGTT
Statistics
Matches: 71, Mismatches: 18, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
2 5 0.07
3 64 0.90
4 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:131399213 original size:12 final size:12
Alignment explanation
Indices: 131399169--131399212 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
131399159 CTATTGTCGT
131399169 TATTATTAATAC
1 TATTATTAATAC
* *
131399181 TAATATTAATAT
1 TATTATTAATAC
* *
131399193 TTTTATTACTAC
1 TATTATTAATAC
131399205 TATTATTA
1 TATTATTA
131399213 CATTAGTATT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (12 bp):
TATTATTAATAC
Found at i:131401446 original size:7 final size:7
Alignment explanation
Indices: 131401434--131401473 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
131401424 GTTAGTAATT
131401434 TTTTATA
1 TTTTATA
131401441 TTTTATA
1 TTTTATA
131401448 TTTTATA
1 TTTTATA
131401455 TTTTATA
1 TTTTATA
131401462 TTTTATA
1 TTTTATA
131401469 TTTTA
1 TTTTA
131401474 ATCAATTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTTATA
Found at i:131401969 original size:30 final size:30
Alignment explanation
Indices: 131401935--131401996 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
131401925 TGATTCAAAG
*
131401935 TTAGTCTTCGGATTTGTCTTCTAGTCAATT
1 TTAGTCTTCAGATTTGTCTTCTAGTCAATT
131401965 TTAGTCTTCAGATTTGTCTTCTAGTCAATT
1 TTAGTCTTCAGATTTGTCTTCTAGTCAATT
131401995 TT
1 TT
131401997 TGATCTAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.52
Consensus pattern (30 bp):
TTAGTCTTCAGATTTGTCTTCTAGTCAATT
Found at i:131401973 original size:18 final size:17
Alignment explanation
Indices: 131401947--131401996 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
131401937 AGTCTTCGGA
131401947 TTTGTCTTCTAGTCAAT
1 TTTGTCTTCTAGTCAAT
131401964 TTTAGTCTTC-AG---A-
1 TTT-GTCTTCTAGTCAAT
131401977 TTTGTCTTCTAGTCAAT
1 TTTGTCTTCTAGTCAAT
131401994 TTT
1 TTT
131401997 TGATCTAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 12
0.69 0.00 0.31
Matches are distributed among these distances:
12 6 0.22
13 5 0.19
14 1 0.04
16 1 0.04
17 8 0.30
18 6 0.22
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (17 bp):
TTTGTCTTCTAGTCAAT
Found at i:131403129 original size:18 final size:18
Alignment explanation
Indices: 131403106--131403160 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
131403096 GAAAGTTGTG
131403106 ATAATTATATATTTAAAA
1 ATAATTATATATTTAAAA
* **
131403124 ATAATTAGA-ATTTAGATT
1 ATAATTATATATTTA-AAA
*
131403142 ATAATTAT-TAGTTAAAA
1 ATAATTATATATTTAAAA
131403159 AT
1 AT
131403161 TGTGATGATT
Statistics
Matches: 28, Mismatches: 7, Indels: 5
0.70 0.17 0.12
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
ATAATTATATATTTAAAA
Found at i:131404536 original size:2 final size:2
Alignment explanation
Indices: 131404523--131404570 Score: 87
Period size: 2 Copynumber: 24.0 Consensus size: 2
131404513 CTTTTTCTCA
*
131404523 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
131404565 AT AT AT
1 AT AT AT
131404571 TTAAAATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:131407591 original size:26 final size:26
Alignment explanation
Indices: 131407555--131407690 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131407545 ACATGAATTC
131407555 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
131407581 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131407607 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131407633 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
131407659 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
131407685 TTATCA
1 TTATCA
131407691 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:131408706 original size:24 final size:24
Alignment explanation
Indices: 131408663--131408716 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
131408653 TATATATATT
*
131408663 TAAAAAAATAAAGAATATATAAAA
1 TAAAAAAATAAAGAAAATATAAAA
131408687 TAAAAAAACTAAA-AAAATATAAAA
1 TAAAAAAA-TAAAGAAAATATAAAA
131408711 TAAAAA
1 TAAAAA
131408717 TAAAAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 24 0.86
25 4 0.14
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.19
Consensus pattern (24 bp):
TAAAAAAATAAAGAAAATATAAAA
Found at i:131409055 original size:169 final size:170
Alignment explanation
Indices: 131408772--131409111 Score: 637
Period size: 170 Copynumber: 2.0 Consensus size: 170
131408762 GGCGACGGAC
*
131408772 GGTGGTCCGATGGTTGGACCGGCGACAGACCCATGGCCAGAAATCCCACCGGAAATCGCCCAGCT
1 GGTGGTCCGATGGTTGGACCGGCGACAGACCCATGGCCAGAAATCCCACCGGAAATCACCCAGCT
131408837 CCCCCCTCTCTCCCCTTTTTTTTCTGGTTTTGGTACAAATGATTTTTTTTTCTGATTTTAGAGCT
66 CCCCCCTCTCTCCCCTTTTTTTTCTGGTTTTGGTACAAATGATTTTTTTTTCTGATTTTAGAGCT
131408902 ATTTATAGTGCTCAAAAACGGCGTCGTTTTGGCATTAAAA
131 ATTTATAGTGCTCAAAAACGGCGTCGTTTTGGCATTAAAA
*
131408942 GGTGGTCCGATGGTTGGACCGGCGACCGA-CCATGGCCAGAAATCCCACCGGAAATCACCCAGCT
1 GGTGGTCCGATGGTTGGACCGGCGACAGACCCATGGCCAGAAATCCCACCGGAAATCACCCAGCT
131409006 CCCCCCTCTCTCCCCTTTTTTTTTCTGGTTTTGGTACAAATGATTTTTTTTTCTGATTTTAGAGC
66 CCCCCCTCTCTCCCC-TTTTTTTTCTGGTTTTGGTACAAATGATTTTTTTTTCTGATTTTAGAGC
*
131409071 TATTTATAGTGCTCCAAAACGGCGTCGTTTTGGCATTAAAA
130 TATTTATAGTGCTCAAAAACGGCGTCGTTTTGGCATTAAAA
131409112 CCCAGGACAC
Statistics
Matches: 166, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
169 49 0.30
170 117 0.70
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (170 bp):
GGTGGTCCGATGGTTGGACCGGCGACAGACCCATGGCCAGAAATCCCACCGGAAATCACCCAGCT
CCCCCCTCTCTCCCCTTTTTTTTCTGGTTTTGGTACAAATGATTTTTTTTTCTGATTTTAGAGCT
ATTTATAGTGCTCAAAAACGGCGTCGTTTTGGCATTAAAA
Found at i:131409708 original size:21 final size:21
Alignment explanation
Indices: 131409684--131409756 Score: 55
Period size: 23 Copynumber: 3.4 Consensus size: 21
131409674 TTATTCCTAA
131409684 TATATATATTAATATATTATG
1 TATATATATTAATATATTATG
* *
131409705 TATACATATTTTAATACTATGTTAAG
1 TAT--ATATATTAATA-TA--TTATG
131409731 TATATAT-TT--T-TATTATG
1 TATATATATTAATATATTATG
131409748 TATATATAT
1 TATATATAT
131409757 ATTTTTCAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 15
0.70 0.05 0.25
Matches are distributed among these distances:
17 11 0.26
18 1 0.02
19 2 0.05
21 4 0.09
23 12 0.28
24 6 0.14
26 7 0.16
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.53
Consensus pattern (21 bp):
TATATATATTAATATATTATG
Found at i:131409762 original size:21 final size:21
Alignment explanation
Indices: 131409683--131409760 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 21
131409673 TTTATTCCTA
131409683 ATATATATATTAATATATTATGT
1 ATATATATATT--TATATTATGT
* *
131409706 ATACATAT-TTTAATACTATGT
1 ATATATATATTT-ATATTATGT
*
131409727 -TAAGTATATATTTTTATTATGT
1 AT-A-TATATATTTATATTATGT
131409749 ATATATATATTT
1 ATATATATATTT
131409761 TTCAATATTA
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 2 0.04
21 18 0.40
22 14 0.31
23 11 0.24
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (21 bp):
ATATATATATTTATATTATGT
Found at i:131409772 original size:21 final size:21
Alignment explanation
Indices: 131409731--131409773 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
131409721 CTATGTTAAG
*
131409731 TATATATTTTTATTATGTATA
1 TATATATTTTTAATATGTATA
131409752 TATATATTTTTCAATAT-TATA
1 TATATATTTTT-AATATGTATA
131409773 T
1 T
131409774 TATTTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (21 bp):
TATATATTTTTAATATGTATA
Found at i:131415668 original size:32 final size:32
Alignment explanation
Indices: 131415632--131415692 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
131415622 TGTATGCATT
131415632 TTAGCATTTTAATAGTTAATGGATGATGGCCA
1 TTAGCATTTTAATAGTTAATGGATGATGGCCA
131415664 TTAGCATTTTAATAGTTAATGGATGATGG
1 TTAGCATTTTAATAGTTAATGGATGATGG
131415693 GCATGGTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGCCA
Found at i:131417793 original size:26 final size:25
Alignment explanation
Indices: 131417735--131417867 Score: 223
Period size: 26 Copynumber: 5.2 Consensus size: 25
131417725 TGATACAAAT
131417735 TGATAATAGGTTAGGTAAAT-TTCA
1 TGATAATAGGTTAGGTAAATGTTCA
131417759 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
131417785 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
131417811 TGATAATAGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
*
131417836 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
131417862 TGATAA
1 TGATAA
131417868 GAATTTCATG
Statistics
Matches: 105, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
24 20 0.19
25 24 0.23
26 61 0.58
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:131417864 original size:51 final size:52
Alignment explanation
Indices: 131417735--131417867 Score: 227
Period size: 51 Copynumber: 2.6 Consensus size: 52
131417725 TGATACAAAT
131417735 TGATAATAGGTTAGGTAAA--TTTCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
*
131417785 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTT-CA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
*
131417836 TGATAATGGGTTAGGTAAATGTTTCATGATAA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAA
131417868 GAATTTCATG
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
50 19 0.24
51 32 0.41
52 27 0.35
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.36
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATAGGTTAGGTAAATGTTCCA
Found at i:131418475 original size:14 final size:15
Alignment explanation
Indices: 131418447--131418475 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
131418437 CTGGTGACAG
131418447 AGCAGTAACTGTGAC
1 AGCAGTAACTGTGAC
131418462 AGCAGTAA-TGTGAC
1 AGCAGTAACTGTGAC
131418476 TTTGGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.21
Consensus pattern (15 bp):
AGCAGTAACTGTGAC
Found at i:131423601 original size:25 final size:25
Alignment explanation
Indices: 131423567--131423673 Score: 164
Period size: 25 Copynumber: 4.2 Consensus size: 25
131423557 TGATACAAAT
131423567 TGATAATAGGTTAGGTAAAAT-TTCA
1 TGATAATAGGTTAGGT-AAATGTTCA
131423592 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTT-CA
*
131423618 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATAGGTTAGGTAAATGTTCA
131423643 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATG-TTCA
131423668 TGATAA
1 TGATAA
131423674 GAATTCATGT
Statistics
Matches: 78, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
24 17 0.22
25 37 0.47
26 24 0.31
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATAGGTTAGGTAAATGTTCA
Found at i:131434209 original size:1 final size:1
Alignment explanation
Indices: 131434203--131434236 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
131434193 TACTTCGCCT
* *
131434203 AAAAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
131434237 GGAGAGAGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:131435599 original size:44 final size:44
Alignment explanation
Indices: 131435460--131435603 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 44
131435450 AGATCTTATC
* *
131435460 CCCCTAAGCAGTAGTGGTGTAGATCGAAGACGAAGAACCTTAAA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
* * * * * * * *
131435504 CCCCTAAGCAGT-GGGGTAACAGGT-TAA-ATTGCAG-ATCTT-AT
1 CCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGAACCTTAAA
131435545 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
1 C-CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
131435590 CCCCTAAGCAGTAG
1 CCCCTAAGCAGTAG
131435604 GGTAACAGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 16
0.69 0.17 0.15
Matches are distributed among these distances:
41 2 0.03
42 21 0.28
43 16 0.22
44 33 0.45
45 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (44 bp):
CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
Found at i:131435612 original size:86 final size:86
Alignment explanation
Indices: 131435412--131435614 Score: 334
Period size: 86 Copynumber: 2.4 Consensus size: 86
131435402 GTCATAAGGT
* ***
131435412 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
* *
131435477 TGTAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* *
131435498 CTTAAACCCCTAAGCAGTGGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
131435563 AGCAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
131435584 CTTAAACCCCTAAGCAGTAGGGTAACAGGTT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTT
131435615 GAGTATACAG
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 108 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAGAAC
Found at i:131435637 original size:86 final size:86
Alignment explanation
Indices: 131435412--131435697 Score: 299
Period size: 86 Copynumber: 3.3 Consensus size: 86
131435402 GTCATAAGGT
* *** * ***
131435412 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTACAGATCTTAAAACCCTAAGCAGTAGTGG
* *
131435477 TGTAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* * ***
131435498 CTTAAACCCCTAAGCAGTGGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTACAGATCTTAAAACCCTAAGCAGTAGTGG
131435563 AGCAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* *
131435584 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTATACAGATC-TAAAACCCTAAGCAGTAG-G
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAAT-TACAGATCTTAAAACCCTAAGCAGTAGTG
* * * *
131435647 GAAACAGATCAAAGATGACA-AGC
65 G-AGCAGATCGAAGACGA-AGAAC
* * * *
131435670 CGTAATCCCTTAAACAGTAGGGTAACAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAG
131435698 ACTAAAAATT
Statistics
Matches: 174, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
85 2 0.01
86 164 0.94
87 8 0.05
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTACAGATCTTAAAACCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAGAAC
Found at i:131435789 original size:42 final size:42
Alignment explanation
Indices: 131435730--131435822 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
131435720 CCTGAAACAG
* *
131435730 CAGTGGAGTTGATCGAAGCCGCAGCAGATCTCCTTGAAGTTT
1 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
131435772 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
1 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
131435814 CAGTGGAGT
1 CAGTGGAGT
131435823 AGATTAAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (42 bp):
CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
Found at i:131437158 original size:19 final size:18
Alignment explanation
Indices: 131437123--131437163 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
131437113 TTGTTAATTC
131437123 ACTTTTGTCCATTTTTTT
1 ACTTTTGTCCATTTTTTT
*
131437141 ACTTTT-TCTCATTATTTT
1 ACTTTTGTC-CATTTTTTT
131437159 A-TTTT
1 ACTTTT
131437164 AGTCTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.68
Consensus pattern (18 bp):
ACTTTTGTCCATTTTTTT
Found at i:131437237 original size:25 final size:24
Alignment explanation
Indices: 131437209--131437266 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
131437199 CTGCTATCAT
*
131437209 TATTATATT-TTATTTATTAGCATGG
1 TATTATATTATTA-TTATTA-CATAG
*
131437234 TATTATTATTATTATTATTACTTAG
1 TATTA-TATTATTATTATTACATAG
131437259 TATTATAT
1 TATTATAT
131437267 ACATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 13 0.45
26 10 0.34
27 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (24 bp):
TATTATATTATTATTATTACATAG
Found at i:131437320 original size:18 final size:19
Alignment explanation
Indices: 131437284--131437321 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
131437274 TATCATATAG
*
131437284 TATTATTAATTTGTTTTAA
1 TATTATTAATTTGTGTTAA
*
131437303 TATTATTATTTTG-GTTAA
1 TATTATTAATTTGTGTTAA
131437321 T
1 T
131437322 GTATTTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
TATTATTAATTTGTGTTAA
Found at i:131442723 original size:64 final size:64
Alignment explanation
Indices: 131442650--131442866 Score: 154
Period size: 64 Copynumber: 3.3 Consensus size: 64
131442640 CTGGGCCAGA
* *
131442650 GCCCTTTTCAAATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
***** * ** *
131442714 GCCCATTTCAAAATAC-ATGCAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGTGGTA
1 GCCCATTTCAAAATACAAT--AA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACA---GTA
* *
131442776 CTGGGCCAGA-
55 -TGGCCCATAG
* * *
131442786 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
131442850 GCCCATTTCAAAATACA
1 GCCCATTTCAAAATACA
131442867 TGCAACATCA
Statistics
Matches: 107, Mismatches: 30, Indels: 32
0.63 0.18 0.19
Matches are distributed among these distances:
63 9 0.08
64 31 0.29
65 5 0.05
66 1 0.01
67 13 0.12
68 4 0.04
69 13 0.12
70 1 0.01
71 5 0.05
72 16 0.15
73 9 0.08
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAAAATACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:131442860 original size:136 final size:136
Alignment explanation
Indices: 131442616--131442900 Score: 543
Period size: 136 Copynumber: 2.1 Consensus size: 136
131442606 CATTGGGCCT
**
131442616 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
131442681 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
131442746 ATATGC
131 ATATGC
*
131442752 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
131442817 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
131442882 ATATGC
131 ATATGC
131442888 AAGCCCATTTGGG
1 AAGCCCATTTGGG
131442901 GAGACTACTC
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTGGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAAATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:131442936 original size:21 final size:21
Alignment explanation
Indices: 131442907--131442954 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
131442897 TGGGGAGACT
*
131442907 ACTCAACCC-ACCAACCACTAC
1 ACTCCACCCTACCAACCA-TAC
*
131442928 ACTCCACCCTACCAGCCATAC
1 ACTCCACCCTACCAACCATAC
131442949 ACTCCA
1 ACTCCA
131442955 TGTGGGGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.52, G:0.02, T:0.12
Consensus pattern (21 bp):
ACTCCACCCTACCAACCATAC
Found at i:131444722 original size:26 final size:26
Alignment explanation
Indices: 131444686--131444795 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
131444676 CATGAATTTC
* *
131444686 TTATCAAGAAACATTTACCTAAACCA
1 TTATCATGAAACATTTACCTAACCCA
131444712 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
131444738 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGAAACATTTACCTAACCCA
*
131444764 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
131444790 TTATCA
1 TTATCA
131444796 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:131448767 original size:3 final size:3
Alignment explanation
Indices: 131448761--131448805 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
131448751 CTTCATTTTC
*
131448761 ATT ATT ATT ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
131448806 TTTTTTTTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:131465571 original size:19 final size:18
Alignment explanation
Indices: 131465547--131465583 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
131465537 TTTTAATTCA
131465547 TGATTAATTATGATTTATT
1 TGATTAATT-TGATTTATT
*
131465566 TGATTAATTTGTTTTATT
1 TGATTAATTTGATTTATT
131465584 CCTATCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (18 bp):
TGATTAATTTGATTTATT
Found at i:131468916 original size:46 final size:46
Alignment explanation
Indices: 131468860--131469126 Score: 417
Period size: 46 Copynumber: 5.8 Consensus size: 46
131468850 GTGTGCTCTC
*
131468860 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
131468906 TGCTATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
131468952 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*** * *
131468998 TGACGGGAAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
131469045 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
131469091 TGATATGAAATGAATAAGACCATGGTTGAAAGATAC
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATAC
131469127 TATAGCGACG
Statistics
Matches: 201, Mismatches: 19, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
46 161 0.80
47 40 0.20
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:131469055 original size:93 final size:92
Alignment explanation
Indices: 131468859--131469126 Score: 430
Period size: 93 Copynumber: 2.9 Consensus size: 92
131468849 AGTGTGCTCT
**
131468859 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTG-CTATGAAATGTGTAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC-ATGAAATGAATAA
131468923 GACCATGGTTGAAAGATACCATGGCAAC
65 GACCATGGTTGAAAGATACCATGGCAAC
* * ** *
131468951 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGAAAATAAATAA
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATG-AAATGAATAA
131469016 GACCATGGTTGAAAGATACCATGGCAAC
65 GACCATGGTTGAAAGATACCATGGCAAC
* *
131469044 GTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAG
131469109 ACCATGGTTGAAAGATAC
66 ACCATGGTTGAAAGATAC
131469127 TATAGCGACG
Statistics
Matches: 160, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
92 76 0.47
93 84 0.52
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (92 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAATGAATAAG
ACCATGGTTGAAAGATACCATGGCAAC
Found at i:131469124 original size:139 final size:139
Alignment explanation
Indices: 131468874--131469126 Score: 479
Period size: 139 Copynumber: 1.8 Consensus size: 139
131468864 ATGAAATGTG
*
131468874 TAAGACCATGGTTGAAAGATACCATGGCAACGTGCTATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGA
*
131468939 TACCATGGCAACCTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
66 TACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
131469004 GAAAATAAA
131 GAAAATAAA
131469013 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGA
*
131469078 TACCATGGCAACGTGATATGAAATGAATAAGACCATGGTTGAAAGATAC
66 TACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATAC
131469127 TATAGCGACG
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 111 1.00
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (139 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGA
TACCATGGCAACCTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACGG
GAAAATAAA
Found at i:131469715 original size:16 final size:15
Alignment explanation
Indices: 131469694--131469741 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
131469684 GATGTGAATA
131469694 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
131469710 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
131469725 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
131469741 A
1 A
131469742 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:131469717 original size:24 final size:24
Alignment explanation
Indices: 131469690--131469745 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
131469680 TAATGATGTG
*
131469690 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
131469714 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
131469738 AATAATAA
1 AATAATAA
131469746 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:131469724 original size:8 final size:8
Alignment explanation
Indices: 131469690--131469741 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
131469680 TAATGATGTG
*
131469690 AATAATAA
1 AATATTAA
131469698 AATATATAA
1 AATAT-TAA
131469707 AATA-TAA
1 AATATTAA
131469714 AATATTAA
1 AATATTAA
*
131469722 AATATCAA
1 AATATTAA
*
131469730 AATATTAG
1 AATATTAA
131469738 AATA
1 AATA
131469742 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:131469930 original size:25 final size:25
Alignment explanation
Indices: 131469902--131469950 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
131469892 CGTGATAATA
**
131469902 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATACATACATAATATAGTG
131469927 TTAAAAATACATACATAATATAGT
1 TTAAAAATACATACATAATATAGT
131469951 TAAGATATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAAATACATACATAATATAGTG
Found at i:131469965 original size:22 final size:22
Alignment explanation
Indices: 131469905--131469995 Score: 74
Period size: 25 Copynumber: 3.9 Consensus size: 22
131469895 GATAATATTA
*
131469905 AAAATATGTACATAATATAGTGTT
1 AAAATATATACATAATATA--GTT
*
131469929 AAAAATACATACATAATATAGTT
1 -AAAATATATACATAATATAGTT
* *
131469952 AAGATATATACATAAAATAGTAT
1 AAAATATATACATAATATAGT-T
* *
131469975 ATATATATATATATATATATA
1 A-AAATATATACATA-ATATA
131469996 TACGTAATAT
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
22 18 0.33
23 5 0.09
24 11 0.20
25 21 0.38
ACGTcount: A:0.53, C:0.04, G:0.07, T:0.36
Consensus pattern (22 bp):
AAAATATATACATAATATAGTT
Found at i:131469977 original size:2 final size:2
Alignment explanation
Indices: 131469972--131469997 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
131469962 CATAAAATAG
131469972 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
131469998 CGTAATATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:131470070 original size:23 final size:25
Alignment explanation
Indices: 131470027--131470072 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
131470017 TATACCTAAT
131470027 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
131470052 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
131470073 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:131470709 original size:30 final size:30
Alignment explanation
Indices: 131470559--131470733 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
131470549 TAGGTACAAG
* *
131470559 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
131470589 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
131470619 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
131470649 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
131470679 TGGTGGTGGAAAAGTTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
131470709 TGGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
131470734 TGAGAAAAGT
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
29 2 0.02
30 127 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:131471501 original size:14 final size:14
Alignment explanation
Indices: 131471482--131471544 Score: 74
Period size: 14 Copynumber: 4.5 Consensus size: 14
131471472 GAGTTGATTT
* *
131471482 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
131471496 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
131471511 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
*
131471525 TT-AAAAACAGAAT
1 TTGAAAAACAGAAA
131471538 TTGAAAA
1 TTGAAAA
131471545 GACCTCAGTG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.62, C:0.05, G:0.13, T:0.21
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:131471517 original size:13 final size:13
Alignment explanation
Indices: 131471501--131471544 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
131471491 ATAAATTGAA
131471501 AAAACAGAAATTG
1 AAAACAGAAATTG
*
131471514 AAAAGCAGAAATTA
1 AAAA-CAGAAATTG
*
131471528 AAAACAGAATTTG
1 AAAACAGAAATTG
131471541 AAAA
1 AAAA
131471545 GACCTCAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 15 0.56
14 12 0.44
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.16
Consensus pattern (13 bp):
AAAACAGAAATTG
Found at i:131471655 original size:75 final size:77
Alignment explanation
Indices: 131471567--131471847 Score: 396
Period size: 77 Copynumber: 3.7 Consensus size: 77
131471557 TGGCCCGAGA
* *
131471567 CTCAACTCACCTCTTGCAATATGAGTTGA-T-TTTTGAAAAGCAGAAATTGAAAA-CGCCTCAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAG-CTCAGC
** **
131471629 GTGTGA-CTCGAGG
65 ACGTGAGC-AAAGG
*
131471642 CTCAACTTACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
131471707 CGTGAGCAAAGG
66 CGTGAGCAAAGG
*
131471719 CTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
131471784 CGTGAGCAAAGG
66 CGTGAGCAAAGG
* * *
131471796 TTCAACTCACTTCTCGCAATATGAGTTGA-T-TTTTGAAAAACAGAAATT-AAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAA
131471848 GGCTCAACTC
Statistics
Matches: 189, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
74 4 0.02
75 44 0.23
76 2 0.01
77 137 0.72
78 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (77 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTCAGCA
CGTGAGCAAAGG
Found at i:131471897 original size:54 final size:54
Alignment explanation
Indices: 131471791--131471901 Score: 159
Period size: 54 Copynumber: 2.1 Consensus size: 54
131471781 GCACGTGAGC
* * * *
131471791 AAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTA
1 AAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAAAAATTA
* **
131471845 AAAGGCTCAACTCACCTCTCTCAATATAAGTTGATTTTTGAAAAGTAAAAATTA
1 AAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAAAAATTA
131471899 AAA
1 AAA
131471902 ATAGAGTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (54 bp):
AAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGAAAAACAAAAATTA
Found at i:131472021 original size:16 final size:17
Alignment explanation
Indices: 131471988--131472022 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
131471978 TGATATTTTG
*
131471988 AAAAGCAGAAATTGGAA
1 AAAAACAGAAATTGGAA
131472005 AAAAACAGAAATT-GAA
1 AAAAACAGAAATTGGAA
131472021 AA
1 AA
131472023 TACCTCAGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.66, C:0.06, G:0.17, T:0.11
Consensus pattern (17 bp):
AAAAACAGAAATTGGAA
Done.