Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 431 of 433
Found at i:131792234 original size:54 final size:54
Alignment explanation
Indices: 131792106--131792235 Score: 134
Period size: 54 Copynumber: 2.4 Consensus size: 54
131792096 ATTACCATTT
* ** * * * ***
131792106 TACCCTCGATTTACTGAATTACTGTTTCACCCTTGATTTATAGAATTACTATTT
1 TACCCTTGATTTACAAAATTACTGTTTCACCCTCGATTTACAAAATTACTAAAA
* *
131792160 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTACAAAATTACTGTTTCACCCTCGATTTACAAAATTACTAAAA
* **
131792214 TACCCTTGGTTTGTAAAATTAC
1 TACCCTTGATTTACAAAATTAC
131792236 CAAAATACCC
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 63 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (54 bp):
TACCCTTGATTTACAAAATTACTGTTTCACCCTCGATTTACAAAATTACTAAAA
Found at i:131792245 original size:54 final size:54
Alignment explanation
Indices: 131792187--131792410 Score: 166
Period size: 54 Copynumber: 4.1 Consensus size: 54
131792177 ATTACTGTTT
131792187 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * *** ** ***
131792241 TACCCTTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
* * * * *
131792295 TACCC-CTGATTTACAAAGTTA-TAGAAATACCCTTGACTTTCTAAAAATTA-TAGAAG
1 TACCCTC-GATTTACAAAATTACTA-AAATACCCTTG-GTTTGT-AAAATTACCA-AAA
* * * * * ** *
131792351 TACCATTGGTTTACAAAATTACTGAAATACCTTTGGTTTGTTGATTTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
*
131792405 CACCCT
1 TACCCT
131792411 TGTAGGATGA
Statistics
Matches: 123, Mismatches: 39, Indels: 16
0.69 0.22 0.09
Matches are distributed among these distances:
54 77 0.63
55 10 0.08
56 35 0.28
57 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAA
Found at i:131792245 original size:81 final size:81
Alignment explanation
Indices: 131792089--131792248 Score: 178
Period size: 81 Copynumber: 2.0 Consensus size: 81
131792079 TACCCCCGAC
** *** *
131792089 TTACAGAATTACCATTTTACCCTCGATTTACTGAATTACTGTTTCACCCTTGATTTATAGAATTA
1 TTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAATCACCCTTGATTTATAAAATTA
* ***
131792154 CTATTTTACCCTTGAT
66 CCAAAATACCCTTGAT
** * *
131792170 TTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAAT-ACCCTTGGTTTGTAAAATT
1 TTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT-AAATCACCCTTGATTTATAAAATT
131792234 ACCAAAATACCCTTG
65 ACCAAAATACCCTTG
131792249 GTTTGTGAAA
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
81 63 0.98
82 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (81 bp):
TTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAATCACCCTTGATTTATAAAATTA
CCAAAATACCCTTGAT
Found at i:131792507 original size:27 final size:27
Alignment explanation
Indices: 131792443--131792507 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
131792433 ACCCCTAAAA
*
131792443 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
131792470 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
131792497 GGTAAAATGAC
1 GGTAAAATGAC
131792508 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:131793768 original size:20 final size:20
Alignment explanation
Indices: 131793743--131793813 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
131793733 ATTTTGATAA
131793743 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
131793763 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
131793783 ACATGATATTTATGATATGC
1 ACATGATATGTATGATATGC
*
131793803 ACATGAGATGT
1 ACATGATATGT
131793814 TCATAAATGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:131793885 original size:24 final size:24
Alignment explanation
Indices: 131793858--131793981 Score: 180
Period size: 24 Copynumber: 5.2 Consensus size: 24
131793848 GGAGGCAGTG
131793858 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
131793882 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
131793906 -TAAAGGGCTTATGCCCCAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
131793929 CAAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
131793953 -TAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
131793976 TAAAAG
1 CAAAAG
131793982 AGGCAAGGCC
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
23 41 0.46
24 48 0.54
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:131793914 original size:23 final size:23
Alignment explanation
Indices: 131793860--131793979 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
131793850 AGGCAGTGCA
*
131793860 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
131793884 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
131793907 AAAGGGCTTATGCCCCAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
*
131793931 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
131793954 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
131793977 AAA
1 AAA
131793980 AGAGGCAAGG
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
23 45 0.52
24 42 0.48
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:131793931 original size:47 final size:47
Alignment explanation
Indices: 131793860--131793981 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
131793850 AGGCAGTGCA
*
131793860 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
*
131793907 AAAGGGCTTATGCCCCAGTGATCAAAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
* *
131793954 AAAGGGCTTTTGCCCCAGTTATTAAAAG
1 AAAGGGCTTATGCCCCAGTTATCAAAAG
131793982 AGGCAAGGCC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTACGCCCCAGTTATT
Found at i:131797510 original size:21 final size:21
Alignment explanation
Indices: 131797486--131797525 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
131797476 AAATTAATTC
*
131797486 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
131797507 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
131797526 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:131797978 original size:21 final size:21
Alignment explanation
Indices: 131797954--131797993 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
131797944 AAATTAATTC
*
131797954 ATACTTAAGTTGAATCAAATA
1 ATACTTAAGTTGAACCAAATA
131797975 ATACTTAAGTTGAACCAAA
1 ATACTTAAGTTGAACCAAA
131797994 ATATAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.30
Consensus pattern (21 bp):
ATACTTAAGTTGAACCAAATA
Found at i:131798011 original size:468 final size:469
Alignment explanation
Indices: 131797134--131798391 Score: 2369
Period size: 468 Copynumber: 2.7 Consensus size: 469
131797124 TATAACAAAA
131797134 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAA-ATGTTTAATATAACAAAATAGTAAT
1 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
131797198 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTA
66 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATT-GAAATAAATTA
131797263 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
130 AGGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCA
* *
131797328 TCATATGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGTAACC
195 TCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACC
* *
131797393 CGTTAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
260 CATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAA
131797458 GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
325 GCTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACC
131797523 AAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATA
390 AAAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATA
131797588 AAAATTAGTTATAAC
455 AAAATTAGTTATAAC
*
131797603 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTACT
1 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
131797668 TTGAATATAATAATATCAAGAAA-AATCGTAGTTTAATTTTTATAAGTAAATTGAAATAAATTAA
66 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGAAATAAATTAA
131797732 GGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCAT
131 GGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCAT
131797797 CATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
196 CATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
* *
131797862 ATCAGGTTTTCAACCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAG
261 ATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAG
131797927 CTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCA
326 CTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCA
131797992 AAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAA
391 AAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAA
131798057 AAATTAGTTATAAC
456 AAATTAGTTATAAC
*
131798071 TTTTAAAGACATTTAAAAATATTAAATATTAAAATAAAACATGTTTAATATAACAAAATAGTAAT
1 TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
*
131798136 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATT-AAAAAAATTAA
66 TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGAAATAAATTAA
*
131798200 GGTTATATAAATATTCAATAGTGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCAT
131 GGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCAT
*
131798265 CATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
196 CATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
* *
131798330 ATCAGGTTTCCAGCCTATATACTTTGAATCTTTAGAATATTTAAAATAAAGAATGGACAAGC
261 ATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGC
131798392 TCAGCTATTG
Statistics
Matches: 771, Mismatches: 16, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
468 627 0.81
469 97 0.13
470 47 0.06
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (469 bp):
TTTTAAAGACATTTAAAAATATTAAATATTAAAATCAAACATGTTTAATATAACAAAATAGTAAT
TTGAATATAATAATATCAAGAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGAAATAAATTAA
GGTTATATAAATATTCAATAGCGATAGAACTTTTTTCAATTCTTTTTGAATTTTTTAAGATTCAT
CATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
ATCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGAATGGACAAGCAAG
CTACATATATGGTAATAAAATTAATTCATACTTAAGTTGAATCAAATAATACTTAAGTTGAACCA
AAATATAAAAACTTATTCATACTTATTCATACTTCAAATAATAATTAATAATACTATTTTGATAA
AAATTAGTTATAAC
Found at i:131799127 original size:7 final size:7
Alignment explanation
Indices: 131799115--131799145 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
131799105 AAGACATTTA
131799115 AAATATT
1 AAATATT
131799122 AAATATT
1 AAATATT
131799129 AAATATT
1 AAATATT
131799136 AAATATT
1 AAATATT
131799143 AAA
1 AAA
131799146 ATCAATTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AAATATT
Found at i:131799658 original size:27 final size:27
Alignment explanation
Indices: 131799627--131799681 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
131799617 GTTTACAAAG
131799627 GCCTTGATGGAAACTAACATAACTGTT
1 GCCTTGATGGAAACTAACATAACTGTT
131799654 GCCTTGATGGAAACTAACATAACTGTT
1 GCCTTGATGGAAACTAACATAACTGTT
131799681 G
1 G
131799682 ATATACAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (27 bp):
GCCTTGATGGAAACTAACATAACTGTT
Found at i:131800427 original size:23 final size:23
Alignment explanation
Indices: 131800400--131800446 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
131800390 CAGCAATTTG
131800400 GTATAACATTAACAGGAGAAATA
1 GTATAACATTAACAGGAGAAATA
*
131800423 GTATACCATTAACAGGAGAAATA
1 GTATAACATTAACAGGAGAAATA
131800446 G
1 G
131800447 ACCAAGCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.49, C:0.11, G:0.19, T:0.21
Consensus pattern (23 bp):
GTATAACATTAACAGGAGAAATA
Found at i:131801774 original size:26 final size:26
Alignment explanation
Indices: 131801737--131801872 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131801727 TGATACAAAT
* *
131801737 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131801763 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
131801789 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131801815 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131801841 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131801867 TGATAA
1 TGATAA
131801873 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:131803896 original size:137 final size:137
Alignment explanation
Indices: 131803650--131803936 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
131803640 GAGTAGTCTC
131803650 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131803715 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131803780 ACTGTTA
131 ACTGTTA
131803787 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131803852 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131803917 ACTGTTA
131 ACTGTTA
**
131803924 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131803937 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131807674 original size:26 final size:26
Alignment explanation
Indices: 131807637--131807772 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131807627 TGATACAAAT
* *
131807637 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131807663 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
131807689 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131807715 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131807741 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131807767 TGATAA
1 TGATAA
131807773 GAATTTCATG
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:131809797 original size:137 final size:136
Alignment explanation
Indices: 131809551--131809824 Score: 539
Period size: 137 Copynumber: 2.0 Consensus size: 136
131809541 GAGTAGTCTC
131809551 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131809616 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCT-GCCCAGTACC
131809681 ACTGTTA
130 ACTGTTA
131809688 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131809753 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCAGTACCA
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCAGTACCA
131809818 CTGTTA
131 CTGTTA
131809824 C
1 C
131809825 TGAATGGGCT
Statistics
Matches: 137, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
136 18 0.13
137 119 0.87
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.31
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGCCCAGTACCA
CTGTTA
Found at i:131812423 original size:25 final size:25
Alignment explanation
Indices: 131812395--131812446 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
131812385 TTTCTAGCTA
131812395 ATAGTTCAACAAATGCTAATTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
*
131812420 ATAGTTCAACAAATGCTATTTCCAC
1 ATAGTTCAACAAATGCTAATTCCAC
131812445 AT
1 AT
131812447 TCAAAATCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (25 bp):
ATAGTTCAACAAATGCTAATTCCAC
Found at i:131812931 original size:41 final size:41
Alignment explanation
Indices: 131812867--131813145 Score: 405
Period size: 41 Copynumber: 6.8 Consensus size: 41
131812857 GTTCTATGGC
*
131812867 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
* *
131812908 TTTTAGCGGCGTTTCACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
* * *
131812949 TTTTAGCGGCGTTTTTCCCAAAGCACTGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
* *
131812990 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAGTGCTTTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
* * *
131813031 TTTTAGCGGCGTTTTACCCAAAACCCCGCTAATGATCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
* *
131813072 TTTTAGCGGCGTTTTACCTAAAGCGCCGCTAATGTTCTGGT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
* * * *
131813113 TTTTAGCAGTGTTTTACCTAAAGCGCTGCTAAT
1 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAAT
131813146 AATCTATTTT
Statistics
Matches: 214, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 214 1.00
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAATGCTCTGGT
Found at i:131813196 original size:40 final size:40
Alignment explanation
Indices: 131812867--131813238 Score: 156
Period size: 41 Copynumber: 9.1 Consensus size: 40
131812857 GTTCTATGGC
* * * * *
131812867 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCT-GT
* * * ** * *
131812908 TTTTAGCGGCGTTTCACCGAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCT-GT
* * * ** * * * *
131812949 TTTTAGCGGCGTTTTTCCCAAAGCACTGCTAATGCTCTGGT
1 TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCT-GT
* * ** * * *
131812990 TTTTAGCGGCGTTTTACCCAAAGCGCCGCTAGTGCTTTGGT
1 TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCT-GT
* * ** * * *
131813031 TTTTAGCGGCGTTTTACCCAAAACCCCGCTAATGATCTGGT
1 TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCT-GT
* * * * *
131813072 TTTTAGCGGCGTTTTACCT-AAAGCGCCGCTAATGTTCTGGT
1 TTTTAGCAGCATTTTA-CTAAAAACGCCGCTATTGCTCT-GT
** * * * ** *
131813113 TTTTAGCAGTGTTTTACCT-AAAGCGCTGCTAATAATCTAT
1 TTTTAGCAGCATTTTA-CTAAAAACGCCGCTATTGCTCTGT
* * *
131813153 TTTTAG-AGCGTTTTAGTAAAAAACGCCGCTGTTGCTCTGT
1 TTTTAGCAGCATTTTACT-AAAAACGCCGCTATTGCTCTGT
* *
131813193 TTTTAGCAGCATTTTTCTTAAAACGCCGCTATTGCTCTGT
1 TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCTGT
131813233 ATTTTA
1 -TTTTA
131813239 AAATTTTTGC
Statistics
Matches: 285, Mismatches: 41, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
38 1 0.00
39 8 0.03
40 47 0.16
41 228 0.80
42 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.36
Consensus pattern (40 bp):
TTTTAGCAGCATTTTACTAAAAACGCCGCTATTGCTCTGT
Found at i:131813796 original size:23 final size:23
Alignment explanation
Indices: 131813770--131813814 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
131813760 TGGGTATGTG
* *
131813770 ATGACGTTATCTTCTAAATATGC
1 ATGAAGTTATCTTCAAAATATGC
* *
131813793 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTCAAAATATG
131813815 TTGAATTGGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTCAAAATATGC
Found at i:131819026 original size:44 final size:44
Alignment explanation
Indices: 131818976--131819711 Score: 278
Period size: 44 Copynumber: 16.1 Consensus size: 44
131818966 ATCGAATTGG
*
131818976 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
** * * * *** *
131819020 TTAATCTTATCTCCCTGAAGTTACAGTGAAGTAGAACGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * ** *
131819064 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * * * *
131819109 TAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * * * *
131819153 CAAGTCTCATCTCCCTAAAGTTGCAATGGAGCA-ACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * **
131819196 GCGAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACCAGTCA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG----C--T-A
* * * * *** *
131819248 CAAATCCTATAC-CTCTGAAGTTGTAGTAGATTGGA-TCAAGTCTA
1 CAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CTA
* * *** *
131819292 CCATGGAAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGAACGAAGATA
1 -C-----AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * ** *
131819342 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * * * *
131819387 TAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * * * *
131819431 CAAGTCTCATCTCCCTAAAGTTGCAATGGAGCA-ACTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * **
131819474 GCGAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACCAGTCA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG----C--T-A
* * * *** *
131819526 CAAATCCTATAC-CTCTGAAGTTGCAGTAGATTGGA-TCAAGTCTA
1 CAAATCTTAT-CTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CTA
* ** *
131819570 CCATGGAAAATCTTATCTCCCTGAAGTTGCAGTTGAGGTGATTAAAGCCA
1 -C-----AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
** * * ** * *
131819620 TTAACCTTATCTCCCTGAAGTTACAGTGGAGCAGGCTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * *
131819664 GCGAATCTTATTTCCCTGAAGTTGCAGTGGAACAGATTTAAGCTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
131819709 CAA
1 CAA
131819712 GTTACAAACC
Statistics
Matches: 490, Mismatches: 164, Indels: 76
0.67 0.22 0.10
Matches are distributed among these distances:
43 14 0.03
44 234 0.48
45 110 0.22
47 2 0.00
49 2 0.00
50 64 0.13
51 62 0.13
52 2 0.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
Found at i:131819415 original size:89 final size:89
Alignment explanation
Indices: 131818975--131819417 Score: 306
Period size: 89 Copynumber: 4.9 Consensus size: 89
131818965 GATCGAATTG
* * ** * * *
131818975 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATTAATCTTATCTCCCTGAAG
1 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTATAAATCTTATCTCCCTGAAG
* *
131819040 TTACAGTGAAGTAGAACGAAGATA
66 TTGCAGTGGAGTAGAACGAAGATA
* *
131819064 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAG
1 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTATAAATCTTATCTCCCTGAAG
* * *** *
131819129 TTGTAGTGGAGCAGGTTGAAGTTA
66 TTGCAGTGGAGTAGAACGAAGATA
* * * * * * * ** *
131819153 -CAAGT-CTCATCTCCCTAAAGTTGCA-ATGGAGC-AACTGAAGATAGCGAATCTTATTTCCCTG
1 GCAAATCCT-ATCTCTCTGAAGTTGCAGA-AGAGCAAATTAAAGCTA-TAAATCTTATCTCCCTG
* *** *
131819214 AAGTTGCAGTGGAATAGATTAAAGCTACCA
63 AAGTTGCAGTGGAGTAGAACGAAG--A-TA
* * * * *
131819244 GTCACAAATCCTATAC-CTCTGAAGTTGTAGTAGATTGGATCAAGTCTACCATG-GA-AAATCTT
1 G---CAAATCCTAT-CTCTCTGAAGTTGCAG-A-A---GAGCAAAT-TA--AAGCTATAAATCTT
*
131819306 ATCTCCCTGAAGTTACAGTGGAGTAGAACGAAGATA
54 ATCTCCCTGAAGTTGCAGTGGAGTAGAACGAAGATA
* *
131819342 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAG
1 GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTATAAATCTTATCTCCCTGAAG
*
131819407 TTGTAGTGGAG
66 TTGCAGTGGAG
131819418 CAGGTTGAAG
Statistics
Matches: 265, Mismatches: 65, Indels: 48
0.70 0.17 0.13
Matches are distributed among these distances:
87 13 0.05
88 55 0.21
89 100 0.38
90 6 0.02
91 1 0.00
93 1 0.00
94 2 0.01
95 39 0.15
96 3 0.01
97 1 0.00
98 2 0.01
99 1 0.00
100 3 0.01
101 34 0.13
102 1 0.00
103 1 0.00
104 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (89 bp):
GCAAATCCTATCTCTCTGAAGTTGCAGAAGAGCAAATTAAAGCTATAAATCTTATCTCCCTGAAG
TTGCAGTGGAGTAGAACGAAGATA
Found at i:131819519 original size:278 final size:278
Alignment explanation
Indices: 131819022--131819602 Score: 1135
Period size: 278 Copynumber: 2.1 Consensus size: 278
131819012 TAAAGCCATT
131819022 AATCTTATCTCCCTGAAGTTACAGTGAAGTAGAACGAAGATAGCAAATCCTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTACAGTGAAGTAGAACGAAGATAGCAAATCCTATCTCTCTGAAGTT
131819087 GCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTT
66 GCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTT
131819152 ACAAGTCTCATCTCCCTAAAGTTGCAATGGAGCAACTGAAGATAGCGAATCTTATTTCCCTGAAG
131 ACAAGTCTCATCTCCCTAAAGTTGCAATGGAGCAACTGAAGATAGCGAATCTTATTTCCCTGAAG
*
131819217 TTGCAGTGGAATAGATTAAAGCTACCAGTCACAAATCCTATACCTCTGAAGTTGTAGTAGATTGG
196 TTGCAGTGGAATAGATTAAAGCTACCAGTCACAAATCCTATACCTCTGAAGTTGCAGTAGATTGG
131819282 ATCAAGTCTACCATGGAA
261 ATCAAGTCTACCATGGAA
*
131819300 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGAACGAAGATAGCAAATCCTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTACAGTGAAGTAGAACGAAGATAGCAAATCCTATCTCTCTGAAGTT
131819365 GCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTT
66 GCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTT
131819430 ACAAGTCTCATCTCCCTAAAGTTGCAATGGAGCAACTGAAGATAGCGAATCTTATTTCCCTGAAG
131 ACAAGTCTCATCTCCCTAAAGTTGCAATGGAGCAACTGAAGATAGCGAATCTTATTTCCCTGAAG
131819495 TTGCAGTGGAATAGATTAAAGCTACCAGTCACAAATCCTATACCTCTGAAGTTGCAGTAGATTGG
196 TTGCAGTGGAATAGATTAAAGCTACCAGTCACAAATCCTATACCTCTGAAGTTGCAGTAGATTGG
131819560 ATCAAGTCTACCATGGAA
261 ATCAAGTCTACCATGGAA
*
131819578 AATCTTATCTCCCTGAAGTTGCAGT
1 AATCTTATCTCCCTGAAGTTACAGT
131819603 TGAGGTGATT
Statistics
Matches: 300, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 300 1.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (278 bp):
AATCTTATCTCCCTGAAGTTACAGTGAAGTAGAACGAAGATAGCAAATCCTATCTCTCTGAAGTT
GCAGAAGAGCAAATTAAAGCTATAAACCTTATCTCCATGAAGTTGTAGTGGAGCAGGTTGAAGTT
ACAAGTCTCATCTCCCTAAAGTTGCAATGGAGCAACTGAAGATAGCGAATCTTATTTCCCTGAAG
TTGCAGTGGAATAGATTAAAGCTACCAGTCACAAATCCTATACCTCTGAAGTTGCAGTAGATTGG
ATCAAGTCTACCATGGAA
Found at i:131821302 original size:18 final size:18
Alignment explanation
Indices: 131821287--131821321 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
131821277 TGTCATTAGT
131821287 AATATTATTATTATTATC
1 AATATTATTATTATTATC
* *
131821305 ACTTTTATTATTATTAT
1 AATATTATTATTATTAT
131821322 TATTGTCGTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (18 bp):
AATATTATTATTATTATC
Found at i:131821336 original size:24 final size:24
Alignment explanation
Indices: 131821262--131821339 Score: 79
Period size: 24 Copynumber: 3.2 Consensus size: 24
131821252 AAAATTTTGA
*
131821262 ATTATTTATTACTATTGTCATTAG-T
1 ATTA-TTATTATTATTGTCATT-GTT
* *
131821287 AATATTATTATTATTATCACTT-TT
1 ATTATTATTATTATTGTCA-TTGTT
*
131821311 ATTATTATTATTATTGTCGTTGTT
1 ATTATTATTATTATTGTCATTGTT
131821335 ATTAT
1 ATTAT
131821340 CCGTGTTATT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
23 2 0.05
24 37 0.84
25 5 0.11
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (24 bp):
ATTATTATTATTATTGTCATTGTT
Found at i:131823187 original size:26 final size:26
Alignment explanation
Indices: 131823158--131823265 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
131823148 TGGTACAAAT
*
131823158 TGATAATGGGTTACGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
131823184 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
131823210 CAATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
131823236 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131823262 TGAT
1 TGAT
131823266 GGGCATTTCA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:131823769 original size:26 final size:26
Alignment explanation
Indices: 131823732--131823867 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
131823722 TGATACAAAC
* *
131823732 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131823758 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
* *
131823784 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131823810 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131823836 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
131823862 TGATAA
1 TGATAA
131823868 GAATTCATGT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:131825374 original size:26 final size:26
Alignment explanation
Indices: 131825345--131825397 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
131825335 TTTACAGTTT
131825345 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
131825371 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
131825397 T
1 T
131825398 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:131825891 original size:137 final size:137
Alignment explanation
Indices: 131825645--131825931 Score: 556
Period size: 137 Copynumber: 2.1 Consensus size: 137
131825635 GAGTAGTCTC
131825645 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131825710 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131825775 ACTGTTA
131 ACTGTTA
131825782 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131825847 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131825912 ACTGTTA
131 ACTGTTA
**
131825919 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131825932 AGGCCCAATA
Statistics
Matches: 148, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 148 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131828021 original size:26 final size:26
Alignment explanation
Indices: 131827992--131828044 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
131827982 TTTACAGTTT
131827992 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
131828018 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
131828044 T
1 T
131828045 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:131830402 original size:19 final size:19
Alignment explanation
Indices: 131830378--131830426 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
131830368 TTAGAAATTA
*
131830378 TTTTTATCAT-ACTAATAAT
1 TTTTTATAATAACTAAT-AT
*
131830397 TTTTTATAATAATTAATAT
1 TTTTTATAATAACTAATAT
*
131830416 TTTTTAAAATA
1 TTTTTATAATA
131830427 CTTTTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTTATAATAACTAATAT
Found at i:131830445 original size:19 final size:18
Alignment explanation
Indices: 131830393--131830450 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
131830383 ATCATACTAA
131830393 TAAT-TTTTTATAATAAT
1 TAATATTTTTATAATAAT
131830410 TAATATTTTT-TAA-AA-
1 TAATATTTTTATAATAAT
*
131830425 T-A-CTTTTTATAATAAT
1 TAATATTTTTATAATAAT
131830441 TAATATTTTT
1 TAATATTTTT
131830451 TACGATGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 11
0.72 0.04 0.24
Matches are distributed among these distances:
13 5 0.15
14 4 0.12
15 3 0.09
16 3 0.09
17 8 0.24
18 10 0.30
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (18 bp):
TAATATTTTTATAATAAT
Found at i:131830451 original size:19 final size:19
Alignment explanation
Indices: 131830390--131830452 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 19
131830380 TTTATCATAC
131830390 TAATAATTTTTTATAATAAT
1 TAAT-ATTTTTTATAATAAT
131830410 TAATA--TTTT-T--TAA-
1 TAATATTTTTTATAATAAT
*
131830423 -AATACTTTTTATAATAAT
1 TAATATTTTTTATAATAAT
131830441 TAATATTTTTTA
1 TAATATTTTTTA
131830453 CGATGTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 15
0.69 0.02 0.29
Matches are distributed among these distances:
12 4 0.11
14 7 0.20
15 1 0.03
16 1 0.03
17 7 0.20
19 11 0.31
20 4 0.11
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
TAATATTTTTTATAATAAT
Found at i:131834327 original size:17 final size:18
Alignment explanation
Indices: 131834282--131834328 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
131834272 ATGTTTTTTA
* *
131834282 TTTTTTATTATTCATGAT
1 TTTTTTAATAATCATGAT
*
131834300 TTTTGTCAATAATCAT-AT
1 TTTT-TTAATAATCATGAT
131834318 TTTTTTAATAA
1 TTTTTTAATAA
131834329 AATTTAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 6 0.25
18 10 0.42
19 8 0.33
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTTTAATAATCATGAT
Found at i:131836101 original size:35 final size:33
Alignment explanation
Indices: 131836052--131836149 Score: 90
Period size: 35 Copynumber: 2.8 Consensus size: 33
131836042 AAGAAGAAAA
* *
131836052 TTAAAGTAAGTAATATACAAAATAATATACATTAGT
1 TTAAA-TAAATAATATACAAAATAATA-A-AATAGT
131836088 TTAAATAAATAATATACATAAATTAA-AAAATAGT
1 TTAAATAAATAATATACA-AAA-TAATAAAATAGT
*
131836122 TTAATATAAATATATATATAATAATAAT
1 TTAA-ATAAATA-ATATACAA-AATAAT
131836150 GTATAAGAGC
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
34 9 0.17
35 24 0.45
36 17 0.32
37 3 0.06
ACGTcount: A:0.57, C:0.03, G:0.04, T:0.36
Consensus pattern (33 bp):
TTAAATAAATAATATACAAAATAATAAAATAGT
Found at i:131836393 original size:26 final size:24
Alignment explanation
Indices: 131836340--131836394 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
131836330 AACATTTTTT
* *
131836340 TAAAAAAATAAATAATAAATAAAG
1 TAAAAAAATAAAGAATAAATAAAC
*
131836364 TAAAAGAAATAAAGAATTACATAAAC
1 TAAAA-AAATAAAGAA-TAAATAAAC
131836390 TAAAA
1 TAAAA
131836395 TAAACAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 5 0.19
25 9 0.35
26 12 0.46
ACGTcount: A:0.71, C:0.04, G:0.05, T:0.20
Consensus pattern (24 bp):
TAAAAAAATAAAGAATAAATAAAC
Found at i:131837470 original size:18 final size:18
Alignment explanation
Indices: 131837447--131837496 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
131837437 TGGGCTTCAG
131837447 TATTTGATTTTGGTTTTA-
1 TATTTG-TTTTGGTTTTAT
**
131837465 TATTTGTTTTATTTTTAT
1 TATTTGTTTTGGTTTTAT
*
131837483 TGTTTGTTTTGGTT
1 TATTTGTTTTGGTT
131837497 GTTAGGCCCC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.12, C:0.00, G:0.16, T:0.72
Consensus pattern (18 bp):
TATTTGTTTTGGTTTTAT
Found at i:131839967 original size:40 final size:40
Alignment explanation
Indices: 131839912--131840028 Score: 207
Period size: 40 Copynumber: 2.9 Consensus size: 40
131839902 GCAGTACCTT
131839912 ATGGTGTGTAGGGATGGATGGGTCAATTTTATCCTCATAC
1 ATGGTGTGTAGGGATGGATGGGTCAATTTTATCCTCATAC
* *
131839952 ATGGTGTGTAGGGATGGATGGGTTAATTTTATCCCCATAC
1 ATGGTGTGTAGGGATGGATGGGTCAATTTTATCCTCATAC
*
131839992 ATGGTGTGCAGGGATGGATGGGTCAATTTTATCCTCA
1 ATGGTGTGTAGGGATGGATGGGTCAATTTTATCCTCA
131840029 CGTGGTGTGT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.22, C:0.13, G:0.31, T:0.34
Consensus pattern (40 bp):
ATGGTGTGTAGGGATGGATGGGTCAATTTTATCCTCATAC
Found at i:131842450 original size:48 final size:48
Alignment explanation
Indices: 131842377--131842474 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
131842367 GGGTGTTACA
131842377 AATTTCTCCACTTCCATTTCCAGTTTCTTTGTTCCAAGATGATATTCT
1 AATTTCTCCACTTCCATTTCCAGTTTCTTTGTTCCAAGATGATATTCT
* * *
131842425 AATTTCTTCACTTGCATTTCTAGTTTCTTTGTTCCAAGATGATATTCT
1 AATTTCTCCACTTCCATTTCCAGTTTCTTTGTTCCAAGATGATATTCT
131842473 AA
1 AA
131842475 CTCTCTAGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.22, C:0.21, G:0.09, T:0.47
Consensus pattern (48 bp):
AATTTCTCCACTTCCATTTCCAGTTTCTTTGTTCCAAGATGATATTCT
Found at i:131842699 original size:11 final size:12
Alignment explanation
Indices: 131842685--131842730 Score: 51
Period size: 11 Copynumber: 3.8 Consensus size: 12
131842675 ATTTTAATTA
131842685 AATAAAATATA-
1 AATAAAATATAT
*
131842696 AATAAATATCTTAT
1 AATAAA-AT-ATAT
131842710 AATAAAATA-AT
1 AATAAAATATAT
131842721 AATAAAATAT
1 AATAAAATAT
131842731 TCAACCAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
11 17 0.59
12 2 0.07
13 4 0.14
14 6 0.21
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (12 bp):
AATAAAATATAT
Found at i:131843391 original size:35 final size:35
Alignment explanation
Indices: 131843323--131843391 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 35
131843313 AGAAACGTGA
* * * *
131843323 TTGAGACATTAAATGATAACATTTAACTCTTTAAT
1 TTGAGACATTAAATGAAAAAATTTAAATATTTAAT
131843358 TTGAGA-ATTAAATGAAAAAATTTAAGATATTTAA
1 TTGAGACATTAAATGAAAAAATTTAA-ATATTTAA
131843392 CTCTTATAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (35 bp):
TTGAGACATTAAATGAAAAAATTTAAATATTTAAT
Found at i:131845259 original size:14 final size:13
Alignment explanation
Indices: 131845242--131845280 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
131845232 AACCTAACCC
131845242 AAAAAAAAACAAAG
1 AAAAAAAAA-AAAG
131845256 AAAAAAAGAAAAAG
1 AAAAAAA-AAAAAG
131845270 AAAAAGAAAAA
1 AAAAA-AAAAA
131845281 CCTACCCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 19 0.83
15 4 0.17
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAG
Found at i:131845296 original size:17 final size:18
Alignment explanation
Indices: 131845272--131845305 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
131845262 AGAAAAAGAA
131845272 AAAGAAAAACCT-ACCCC
1 AAAGAAAAACCTAACCCC
131845289 AAA-AAAAACCTAACCCC
1 AAAGAAAAACCTAACCCC
131845306 CCCAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.35, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAGAAAAACCTAACCCC
Found at i:131847923 original size:12 final size:12
Alignment explanation
Indices: 131847903--131847938 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
131847893 ATTCATTTAA
131847903 CATTCATGCATT
1 CATTCATGCATT
*
131847915 CATTTATGCATT
1 CATTCATGCATT
*
131847927 CATTCATTCATT
1 CATTCATGCATT
131847939 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:131854928 original size:68 final size:68
Alignment explanation
Indices: 131854792--131855052 Score: 319
Period size: 68 Copynumber: 3.7 Consensus size: 68
131854782 GAGTTAAGCC
*
131854792 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGA-GTGAGTTGAGCCTCGGGGCACGCT
131854857 GAGGTAT
62 GAGGTAT
* * ** * *
131854864 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGA-TGAGTTGAGCCTCAAGACACGTTGAG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGGCACGCTGAG
131854928 GTAT
65 GTAT
131854932 TTTTAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCGGGGCACGCTG
131854996 AGGTAT
63 AGGTAT
* * ** *
131855002 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGA-GTGAGTTGAGCCT
131855053 TTTAATTTTG
Statistics
Matches: 164, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
66 3 0.02
67 6 0.04
68 51 0.31
69 31 0.19
70 50 0.30
71 9 0.05
72 14 0.09
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (68 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGGCACGCTGAGG
TAT
Found at i:131855006 original size:70 final size:69
Alignment explanation
Indices: 131854792--131855197 Score: 323
Period size: 72 Copynumber: 6.0 Consensus size: 69
131854782 GAGTTAAGCC
* *
131854792 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
131854857 GAGGTAT
63 GAGGTAT
* * ** * *
131854864 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-A-TGAGTTGAGCCTCAAGACACGTTGA
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGA
131854927 GGTAT
65 GGTAT
131854932 TTTTAA-TTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
131854996 AGGTAT
64 AGGTAT
* * ** * * * *
131855002 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA-
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
131855057 --AT
66 GTAT
* **** * *
131855059 TTTGT-TTTTCAAA-----ATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTT-TAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGA
131855118 GGTAT
65 GGTAT
* * * * *
131855123 TTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCT
1 TTTTAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
131855188 GAGGTAT
63 GAGGTAT
131855195 TTT
1 TTT
131855198 CATTTCTGTT
Statistics
Matches: 263, Mismatches: 43, Indels: 56
0.73 0.12 0.15
Matches are distributed among these distances:
52 29 0.11
57 8 0.03
58 1 0.00
60 2 0.01
61 2 0.01
64 5 0.02
65 3 0.01
66 3 0.01
67 6 0.02
68 50 0.19
69 32 0.12
70 49 0.19
71 9 0.03
72 64 0.24
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:131855126 original size:259 final size:251
Alignment explanation
Indices: 131854628--131855212 Score: 958
Period size: 259 Copynumber: 2.3 Consensus size: 251
131854618 TTTCAAGGAA
131854628 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGC--GAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATT-TTGT
131854693 TTTCAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGACACGCTGAGTATTTTAGTTTT
63 TTTCAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGACACGCTGAGTATTTTAGTTTT
131854758 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
128 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
131854823 ATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
193 ATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
131854882 AATCAACTCATATTGCGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
1 AATCAACTCATATTGCGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
*
131854947 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
66 CAAAATCAACTCATATTGCGAG-AGTGAGTTGAGCCTCGGGACACGCTGA-GTA----T--TTTA
131855012 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAA-TTTTGTTTTTCAAAATCA
123 -GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCA
131855076 ACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
187 ACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
* * * *
131855141 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA-TTTTCATTTCT
1 AA--TCAACTCATATTGCGAGA--TGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-T
131855205 GTTTTCAA
61 GTTTTCAA
131855213 TTATGTTCAG
Statistics
Matches: 312, Mismatches: 5, Indels: 19
0.93 0.01 0.06
Matches are distributed among these distances:
251 29 0.09
252 68 0.22
253 3 0.01
254 16 0.05
257 1 0.00
259 89 0.29
260 45 0.14
261 18 0.06
262 8 0.03
263 35 0.11
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (251 bp):
AATCAACTCATATTGCGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
CAAAATCAACTCATATTGCGAGAGTGAGTTGAGCCTCGGGACACGCTGAGTATTTTAGTTTTAAA
TTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCATATT
GCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:131855329 original size:259 final size:248
Alignment explanation
Indices: 131854628--131855305 Score: 653
Period size: 259 Copynumber: 2.6 Consensus size: 248
131854618 TTTCAAGGAA
*
131854628 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGC--GAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATT-TTGT
* * * * *
131854693 TTTCAAAATCAACTCATATTGC-GAGAGTGAGTTGAG-C-CTCGGGACACGCTGAGTATTTTA-G
63 TTTCAAAATCAACTCATATTGCAGA-AGTGAGTTGAGACGCTAGGTATA---T--TTACTTTATG
** ** * * ***
131854754 TTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAAC
122 TTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTGTCAA-TGAGGTTTTTCAAAATCAAC
131854819 TCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
186 TCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
*
131854882 AATCAACTCATATTGCGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTGTTTT
1 AATCAACTCATATTGCGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTTGTTTT
* *
131854947 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTA
66 CAAAATCAACTCATATTGC-AGAAGTGAGTTGA--------G-ACGCT-AGGTATATTTACTTTA
** ** * * ***
131855012 TGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTGTTTTTCAAAATCAA
120 TGTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTGTCAATGAGGTTTTTCAAAATCAA
131855077 CTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
185 CTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
* * *
131855141 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTA-TTTTCATTTCT
1 AA--TCAACTCATATTGCGAGA--TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTT-T
**
131855205 GTTTTCAATTATGTTCAGATCAACTCATATTGC-GAAGTG-GTTGA-AC-CT-TTTA-ATTTACT
61 GTTTTC-A--A-----A-ATCAACTCATATTGCAGAAGTGAGTTGAGACGCTAGGTATATTTACT
*
131855264 TT-T-TTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
117 TTATGTTCAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCT
131855306 CAGGTCACGC
Statistics
Matches: 376, Mismatches: 19, Indels: 59
0.83 0.04 0.13
Matches are distributed among these distances:
251 26 0.07
252 52 0.14
253 36 0.10
254 17 0.05
255 7 0.02
256 2 0.01
258 2 0.01
259 93 0.25
260 46 0.12
261 19 0.05
262 9 0.02
263 35 0.09
264 4 0.01
266 1 0.00
269 5 0.01
270 6 0.02
271 1 0.00
272 15 0.04
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (248 bp):
AATCAACTCATATTGCGAGATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTTGTTTT
CAAAATCAACTCATATTGCAGAAGTGAGTTGAGACGCTAGGTATATTTACTTTATGTTCAAAATC
AACTCATATTGCGAGAGGTGAGTTAAGCCTGTCAATGAGGTTTTTCAAAATCAACTCATATTGCT
AGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:131856212 original size:21 final size:19
Alignment explanation
Indices: 131856167--131856229 Score: 63
Period size: 21 Copynumber: 3.1 Consensus size: 19
131856157 AAATGCTCAG
* *
131856167 GCCATGTGGAGGTCTACAC
1 GCCATGTGGAGGCCCACAC
131856186 GCCCATGTGGAGGCCACACAC
1 G-CCATGTGGAGGCC-CACAC
*
131856207 AGCCATGTGAAGGCCCTACAC
1 -GCCATGTGGAGGCCC-ACAC
131856228 GC
1 GC
131856230 TCGTGTGAGT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
19 1 0.03
20 15 0.41
21 20 0.54
22 1 0.03
ACGTcount: A:0.24, C:0.33, G:0.29, T:0.14
Consensus pattern (19 bp):
GCCATGTGGAGGCCCACAC
Found at i:131857866 original size:24 final size:23
Alignment explanation
Indices: 131857826--131857872 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
131857816 TTATTTAAGT
* *
131857826 ATAAAATTAAACCCAAATTTTAA
1 ATAAAATTAAAACCAAATATTAA
*
131857849 ATAATAATTAAAATCAAATATTAA
1 ATAA-AATTAAAACCAAATATTAA
131857873 TTTAGATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.32
Consensus pattern (23 bp):
ATAAAATTAAAACCAAATATTAA
Found at i:131861759 original size:20 final size:20
Alignment explanation
Indices: 131861736--131861774 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
131861726 CTCTAAGATG
131861736 TTTTTTCTT-ATTTTATTTTA
1 TTTTTT-TTCATTTTATTTTA
*
131861756 TTTTTTTTCTTTTTATTTT
1 TTTTTTTTCATTTTATTTT
131861775 GGTTTTGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTTTCATTTTATTTTA
Found at i:131861768 original size:6 final size:6
Alignment explanation
Indices: 131861759--131861815 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
131861749 TATTTTATTT
* ** **
131861759 TTTTTC TTTTTA TTTTGG TTTTGG TTTTTC TTTTAT- TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTT-TC TTTTTC TTTTTC
131861807 TTTTTC TTT
1 TTTTTC TTT
131861816 CTTTTCTTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
5 1 0.02
6 42 0.95
7 1 0.02
ACGTcount: A:0.04, C:0.09, G:0.07, T:0.81
Consensus pattern (6 bp):
TTTTTC
Found at i:131861804 original size:24 final size:24
Alignment explanation
Indices: 131861759--131861815 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
131861749 TATTTTATTT
* *
131861759 TTTTTCTTTTTATTTTGGTTTTGG
1 TTTTTCTTTTTATTTTGCTTTTGC
* *
131861783 TTTTTC-TTTTATTTTTTCTTTTTC
1 TTTTTCTTTTTA-TTTTGCTTTTGC
131861807 TTTTTCTTT
1 TTTTTCTTT
131861816 CTTTTCTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 5 0.19
24 20 0.74
25 2 0.07
ACGTcount: A:0.04, C:0.09, G:0.07, T:0.81
Consensus pattern (24 bp):
TTTTTCTTTTTATTTTGCTTTTGC
Found at i:131862212 original size:13 final size:13
Alignment explanation
Indices: 131862194--131862229 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
131862184 TGATTTGGGC
*
131862194 GCCACACAGCTTG
1 GCCACACAGCTTA
*
131862207 GCCACACGGCTTA
1 GCCACACAGCTTA
131862220 GCCACACAGC
1 GCCACACAGC
131862230 CTTGTGGCCG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.25, C:0.42, G:0.22, T:0.11
Consensus pattern (13 bp):
GCCACACAGCTTA
Found at i:131862554 original size:20 final size:20
Alignment explanation
Indices: 131862509--131862558 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
131862499 CACGACCTGT
131862509 TCACACGGCAATGTCCCTAG
1 TCACACGGCAATGTCCCTAG
*
131862529 TCCACACGGC-ATGTGCCTCAG
1 T-CACACGGCAATGTCCCT-AG
131862550 TCACACGGC
1 TCACACGGC
131862559 CGTGTGCCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.22, C:0.38, G:0.22, T:0.18
Consensus pattern (20 bp):
TCACACGGCAATGTCCCTAG
Found at i:131862564 original size:21 final size:20
Alignment explanation
Indices: 131862509--131862566 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
131862499 CACGACCTGT
* *
131862509 TCACACGGCAATGTCCCTAG
1 TCACACGGCCATGTGCCTAG
131862529 TCCACACGG-CATGTGCCTCAG
1 T-CACACGGCCATGTGCCT-AG
*
131862550 TCACACGGCCGTGTGCC
1 TCACACGGCCATGTGCC
131862567 CCTCTTCACA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.19, C:0.38, G:0.24, T:0.19
Consensus pattern (20 bp):
TCACACGGCCATGTGCCTAG
Found at i:131862599 original size:43 final size:43
Alignment explanation
Indices: 131862552--131862661 Score: 213
Period size: 43 Copynumber: 2.6 Consensus size: 43
131862542 TGCCTCAGTC
131862552 ACACGGCCGTGTGCCCCTCTTCACATGAGCATGTATCTTAACT
1 ACACGGCCGTGTGCCCCTCTTCACATGAGCATGTATCTTAACT
131862595 ACACGGCCGTGTGCCCCTCTTCACATGAGCATGTATCTTAACT
1 ACACGGCCGTGTGCCCCTCTTCACATGAGCATGTATCTTAACT
131862638 ACACGGCCGTGTG-CCCTCTTCACA
1 ACACGGCCGTGTGCCCCTCTTCACA
131862662 GGGCTTTTGG
Statistics
Matches: 67, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
42 11 0.16
43 56 0.84
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.26
Consensus pattern (43 bp):
ACACGGCCGTGTGCCCCTCTTCACATGAGCATGTATCTTAACT
Found at i:131864321 original size:2 final size:2
Alignment explanation
Indices: 131864259--131864302 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
131864249 ATATGGTATT
*
131864259 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
131864301 TA
1 TA
131864303 ATAGTATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:131864916 original size:34 final size:34
Alignment explanation
Indices: 131864869--131864962 Score: 131
Period size: 34 Copynumber: 2.8 Consensus size: 34
131864859 GTTTTTTTAG
131864869 TTTTTTTTTGGGTTAGGTTTTTCTTTTTTC-TTC
1 TTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTTC
* *
131864902 TTTTTTTTGGGGGTTAGGTTTTTC-TTTTTCTTTTT
1 TTTTTTTT-TGGGTTAGGTTTTTCTTTTTTC-TTTC
131864937 TTTTTTTTTGGGTTAGGTTTTT-TTTT
1 TTTTTTTTTGGGTTAGGTTTTTCTTTT
131864963 AGGGGGCTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
33 14 0.26
34 30 0.56
35 10 0.19
ACGTcount: A:0.03, C:0.05, G:0.18, T:0.73
Consensus pattern (34 bp):
TTTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTTC
Found at i:131866026 original size:148 final size:147
Alignment explanation
Indices: 131865723--131867106 Score: 1355
Period size: 148 Copynumber: 9.3 Consensus size: 147
131865713 AGTGTGTGAT
* * * * *
131865723 CTGAAGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A---ATTTTTGAAA-ACAGAAATTGAAATTA
*
131865788 CCTCAGCATGTGAAT-CGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAAC
61 CCTCAGC--GTG--TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAAC
*
131865852 AGAAATTGAAAATACCTCAACGTGTC
122 AGAAATTGAAAATACCTCAGCGTGTC
* ** *
131865878 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTAAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAGAAATTGAAATTACCTCA
* * *
131865943 GCGTGTCCAAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTTAAAACAGAAATTG
66 GCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTGAAAACAGAAATTG
*
131866008 AAAATACCTCAACGTGTC
130 AAAATACCTCAGCGTGTC
* ** *
131866026 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA-TTTTGAAAACAGAAATTAAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGAAAACAGAAATTGAAATTACCTC
*
131866090 AGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTGAAAGACAAAAAT
65 AGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAA-ACAGAAAT
*
131866154 TGAAAATACCTCAGCATGTC
128 TGAAAATACCTCAGCGTGTC
* ** * *
131866174 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTTTTTTTGACAATAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAA-----TTTTTGAAAACAGAAATTGAAATTA
131866239 CCTCAGCGTGTCCTGAGGCTTC-ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGA
61 CCTCAGCGTGTCC-GAGGC-TCAACTCACCTCTCGCAATATGAGTTGATTTTTTT----------
*
131866303 AATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGAC
114 --TTG-AAAACAGAAATTGAAAATACCTCAGCGTGT--C
* * * * *
131866342 CTAAGGCTCAACTCGCCTCTCGCAATACGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A---ATTTTTGAAAACAGAAATTGAAATTAC
* ** *
131866407 TTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA----ATTTTGAAAACAGAA
62 CTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAA
* *
131866468 ATTGAAATTACCTCAGCATGTC
126 ATTGAAAATACCTCAGCGTGTC
* * * *
131866490 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGAAA-ACAGAAATTGAAATTACC
* * ** * *
131866555 TCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTACAACAGAA
63 TCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTTGAAAACAGAA
* * *
131866620 TTTGAAATTACCCCAGCGTGTC
126 ATTGAAAATACCTCAGCGTGTC
* * *
131866642 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGAAAACAGAAATTGAAATTACCT
* * ** * *
131866707 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGATTTGA----ATTTTGAAAACAGAAAT
64 CAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAAT
*
131866768 TGAAATTACCTCAGCGTGTC
128 TGAAAATACCTCAGCGTGTC
* *
131866788 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAGAAATTGAAATTACCTCA
* *
131866853 GCGTGTCCCGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTTTTTTGACAACAGAAATTG
66 GCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTG
*
131866916 AAATTACCTCAGCGTGTC
130 AAAATACCTCAGCGTGTC
* * * *
131866934 CTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-TTTT-----C-----TTAAAAATACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAGAAATTGAAATTACCTCA
* * *
131866988 GCGCGTCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA----------ACATACAGAAAAT
66 GCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGA-AAACAG-AAAT
*
131867043 TGACAATACCTCAGCGTGTC
128 TGAAAATACCTCAGCGTGTC
* * *
131867063 CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTGAAAA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAA
131867107 AGTAGAAATT
Statistics
Matches: 1086, Mismatches: 91, Indels: 125
0.83 0.07 0.10
Matches are distributed among these distances:
127 1 0.00
128 4 0.00
129 58 0.05
134 2 0.00
135 48 0.04
140 1 0.00
144 65 0.06
145 5 0.00
146 142 0.13
147 103 0.09
148 200 0.18
149 35 0.03
150 48 0.04
151 70 0.06
152 77 0.07
153 62 0.06
154 9 0.01
155 28 0.03
163 2 0.00
166 29 0.03
167 68 0.06
168 28 0.03
169 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (147 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGA
AAATACCTCAGCGTGTC
Found at i:131866060 original size:77 final size:74
Alignment explanation
Indices: 131865723--131867101 Score: 1198
Period size: 72 Copynumber: 18.5 Consensus size: 74
131865713 AGTGTGTGAT
* * *
131865723 CTGAAGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAAATA
* *
131865788 CCTCAGCATGTGA
63 CCTCAGCGTGT-C
* *
131865801 ATCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATA
1 CT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAACAGAAATTGAAAATA
*
131865866 CCTCAACGTGTC
63 CCTCAGCGTGTC
* ** ** *
131865878 TTGAGGCTCAACTCATTTCTCGCAATATGAGTT-A-AATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
131865941 CAGCGTGTC
66 CAGCGTGTC
* * *
131865950 C-AAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTTAAAACAGAAATTGAAAATA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAAATA
*
131866014 CCTCAACGTGTC
63 CCTCAGCGTGTC
* ** *
131866026 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATT-AAAATTACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAA-TACC
131866088 TCAGCGTGTC
65 TCAGCGTGTC
* *
131866098 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAA-ACAGAAATTGAAAATAC
*
131866163 CTCAGCATGTC
64 CTCAGCGTGTC
* ** * * * *
131866174 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTTTTTTTGACAATAGAAATTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAAATA
131866239 CCTCAGCGTGTC
63 CCTCAGCGTGTC
*
131866251 CTGAGGCTTC-ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAA-A-
1 CTGAGGC-TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATAC
** ***
131866313 CAGAAATTGAAAATAC
64 CTCAGCGTG----T-C
* * * * * * * * * ** ******
131866329 CTCG-GCGTGTGACCTAAGGCTCAACTCGC-CTCTCGCAATACGAGTTGATTT-TTTTTTGACAA
1 CT-GAG-G-CTCAACTCA--C-C-TCTCGCAATAT-G-AGT-TGA-TTTTTTTGAAAACAGA-AA
** *
131866391 CAGAAATTGAAATTACTTCAGCGTGTC
54 TTGAAA-----A-TACCTCAGCGTGTC
** * *
131866418 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
131866481 CAGCATGTC
66 CAGCGTGTC
* *
131866490 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAATACC
*
131866555 TCAGCATGTC
65 TCAGCGTGTC
* ** * * * *
131866565 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTACAACAGAATTTGAAATTA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAAATA
*
131866630 CCCCAGCGTGTC
63 CCTCAGCGTGTC
*
131866642 CTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
131866707 CAACGTGTC
66 CAGCGTGTC
* ** * * *
131866716 TTGAGGCTCAACTCATTTCTCGCAATATGATTTGA--ATTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
131866779 CAGCGTGTC
66 CAGCGTGTC
* *
131866788 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
131866851 CAGCGTGTC
66 CAGCGTGTC
* * * *
131866860 CCGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
131866925 CAGCGTGTC
66 CAGCGTGTC
* *
131866934 CTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTCTT---------AA---AAA-TACCT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
*
131866986 CAGCGCGTC
66 CAGCGTGTC
* * *
131866995 CTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA--------ACATACAGAAAATTGACAATAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAG-AAATTGAAAATAC
131867052 CTCAGCGTGTC
64 CTCAGCGTGTC
* *
131867063 CCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
131867102 GAAAAAGTAG
Statistics
Matches: 1061, Mismatches: 168, Indels: 150
0.77 0.12 0.11
Matches are distributed among these distances:
61 46 0.04
62 3 0.00
64 2 0.00
65 2 0.00
67 2 0.00
68 45 0.04
71 31 0.03
72 273 0.26
73 4 0.00
74 156 0.15
75 77 0.07
76 112 0.11
77 141 0.13
78 60 0.06
79 48 0.05
80 3 0.00
81 2 0.00
82 3 0.00
83 9 0.01
84 8 0.01
85 4 0.00
86 8 0.01
87 10 0.01
88 2 0.00
89 4 0.00
90 1 0.00
91 1 0.00
93 1 0.00
94 3 0.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (74 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCT
CAGCGTGTC
Found at i:131866310 original size:14 final size:14
Alignment explanation
Indices: 131866299--131866325 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
131866289 TTTTGAAAGG
131866299 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
131866313 CAGAAATTGAAAA
1 CAGAAATTGAAAA
131866326 TACCTCGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:131866677 original size:391 final size:374
Alignment explanation
Indices: 131865728--131866972 Score: 1675
Period size: 370 Copynumber: 3.3 Consensus size: 374
131865718 GTGATCTGAA
* * *
131865728 GCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAATACCTCA
* * ** * *
131865793 GCATGTGAATCGAGGCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTGAAAACAGAAA
64 GCATGT--CTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAA
* * * * ** * **
131865857 TTGAAAATACCTCAACGTGTCTTGAGGC-TCAACTCATTTCTCGCAATATGAGTT-A-AATTTTG
127 TTGAAATTACCCCAGCGTGTCCTGAGGCTTC-ACTCACCTCTCGCAATATAAGTTGATTTTTTTG
* *
131865919 AAAACAGAAATTGAAATTACCTCAGCGTGTCC-AAGGCTCAACTCACCTCTCGCAATATAAGTTG
191 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * *
131865983 ATTTTTTTTTTTAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCG
256 A-TTTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCG
*
131866048 CAATATGAGTTGAATTTTGAAAACAGAAATTAAAATTACCTCAGCGTGTCCCGAG
320 CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
131866103 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGACAAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAAAAATTGAAAATACCTCAG
* *
131866168 CATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTAATTTTTTTTTTGACAATAGAAATTG
65 CATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTG
* *
131866233 AAATTACCTCAGCGTGTCCTGAGGCTTCACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG
130 AAATTACCCCAGCGTGTCCTGAGGCTTCACTCACCTCTCGCAATATAAGTTGA--TTTTT-----
* *
131866298 GCAGAAATTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTC
188 -------TTG-AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTAAGGCTCAACTCACCTCTC
* * *
131866363 GCAATACGAGTTGATTTTTTTTTGACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCA
243 GCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCA
*
131866428 ACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCATGTCCCG
308 ACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
131866493 AG
373 AG
131866495 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
* *
131866560 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTACAACAGAATTTGA
66 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGA
131866625 AATTACCCCAGCGTGTCCTGAGGC-TCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAA
131 AATTACCCCAGCGTGTCCTGAGGCTTC-ACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAA
* * * ** *
131866689 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGATTTGA---
195 CAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * **
131866751 -ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
260 TTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATA
*
131866815 TGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
325 TGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
* * * *
131866865 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACA-ACAGAAATTGAAATTACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
* * ** *
131866929 GTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
66 ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
131866973 CTTAAAAATA
Statistics
Matches: 784, Mismatches: 63, Indels: 52
0.87 0.07 0.06
Matches are distributed among these distances:
369 60 0.08
370 145 0.18
372 30 0.04
373 64 0.08
374 70 0.09
375 29 0.04
376 28 0.04
377 5 0.01
389 8 0.01
390 30 0.04
391 143 0.18
392 142 0.18
393 30 0.04
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (374 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
ATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTGACAACAGAAATTGA
AATTACCCCAGCGTGTCCTGAGGCTTCACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAAC
AGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATAT
GAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
Found at i:131866812 original size:146 final size:147
Alignment explanation
Indices: 131866309--131867101 Score: 968
Period size: 146 Copynumber: 5.5 Consensus size: 147
131866299 CAGAAATTGA
* * * * *
131866309 AAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGCAATACGAGT
1 AAAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
131866374 TGATTTTTTTTTGACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
64 TGA--TTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
131866439 GCAATATGAGTTGA-ATTTTG
127 GCAATATGAGTTGATATTTTG
* *
131866459 AAAACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
131866524 ATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCA
66 ATTTTTTTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
* *
131866589 ATATGAGTTGATTTTTTTTTTT
130 ATATGAGTTGA----TATTTTG
* * * *
131866611 ACAACAGAATTTGAAATTACCCCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
131866676 ATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAA
66 ATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
*
131866741 TATGATTTGA-ATTTTG
131 TATGAGTTGATATTTTG
*
131866757 AAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * *
131866822 A--TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCATCTCTCGCAA
66 ATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
*
131866885 TATGAGTTGATTTTTTTG
131 TATGAGTTGA-TATTTTG
* *
131866903 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * **
131866968 A---TTTT-----C-----TTAAAAATACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAA
66 ATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
131867020 TATGAGTTGA-A-----
131 TATGAGTTGATATTTTG
* * * *
131867031 CATACAGAAAATTGACAA-TACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGC
1 AAAACAG-AAATTGA-AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
131867095 TGATTTT
64 TGATTTT
131867102 GAAAAAGTAG
Statistics
Matches: 575, Mismatches: 55, Indels: 44
0.85 0.08 0.07
Matches are distributed among these distances:
128 4 0.01
129 53 0.09
130 2 0.00
132 1 0.00
135 50 0.09
140 1 0.00
144 66 0.11
145 4 0.01
146 143 0.25
147 58 0.10
148 32 0.06
150 27 0.05
151 59 0.10
152 75 0.13
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (147 bp):
AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAA
TATGAGTTGATATTTTG
Found at i:131866895 original size:218 final size:219
Alignment explanation
Indices: 131865728--131867101 Score: 1432
Period size: 224 Copynumber: 6.2 Consensus size: 219
131865718 GTGATCTGAA
* * *
131865728 GCTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTTTGAAAGATAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAA-ACAGAAATTGAAATTACCTCA
* ** * *
131865793 GCATGTGAATCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAAT
63 GCGTGT-CCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA----ATTTTGAAAACAGAAAT
* * ** **
131865858 TGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT-AAATTTTGAAA
122 TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
*
131865922 ACAGAAATTGAAATTACCTCAGCGTGT-CCAAG
187 ACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
* * *
131865954 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTTAAAACAGAAATTGAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAATTACCTCA
* * **
131866019 ACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATT-AAAA
63 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAA
*
131866083 TTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGAC
128 -TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTGAAA-AC
* * * **
131866148 AAAAATTGAAAATACCTCAGCATGTCTTGAG
189 AGAAATTGAAATTACCTCAGCGTGTCCCGAG
** * * *
131866179 GCTCAACTCATTTCTCGCAATATGAGTTAATTTTTTTTTTGACAATAGAAATTGAAATTACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAAACAGAAATTGAAATTACCTCA
*
131866244 GCGTGTCCTGAGGCTTC-ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTG
63 GCGTGTCCTGAGGC-TCAACTCACCTCTCGCAATATGAGTTGA----ATT------------TTG
* * * *
131866308 AAAAACAGAAATTGAAAATACCTCGGCGTGTGACCTAAGGCTCAACTCGCCTCTCGCAATACGAG
111 -AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
131866373 TTGATTTTTTTTTGACAACAGAAATTGAAATTACTTCAGCGTGTCCTGAG
173 TTGA---TTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
** * *
131866423 GCTCAACTCATTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCAGCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCG
* * *
131866486 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAA
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTGAAA-ACAGAAATTGAAAA
* * ** * *
131866551 TACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTTACAAC
128 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTTGAAAAC
* * *
131866616 AGAATTTGAAATTACCCCAGCGTGTCCTGAG
189 AGAAATTGAAATTACCTCAGCGTGTCCCGAG
* * *
131866647 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCG
* ** * *
131866712 TGTCTTGAGGCTCAACTCATTTCTCGCAATATGATTTGAATTTTGAAAACAGAAATTGAAATTAC
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATAC
*
131866777 CTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATT
131 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATT
131866841 GAAATTACCTCAGCGTGTCCCGAG
196 GAAATTACCTCAGCGTGTCCCGAG
* *
131866865 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCG
* *
131866930 TGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG-ATTTT-----C-----TTAAAAATAC
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATAC
* * *
131866984 CTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-------ACATACAGAAAA
131 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA-AAACAG-AAA
131867042 TTGACAA-TACCTCAGCGTGTCCCGAG
194 TTGA-AATTACCTCAGCGTGTCCCGAG
*
131867068 GCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTT
131867102 GAAAAAGTAG
Statistics
Matches: 1000, Mismatches: 111, Indels: 97
0.83 0.09 0.08
Matches are distributed among these distances:
201 1 0.00
202 5 0.00
203 58 0.06
204 2 0.00
207 51 0.05
212 1 0.00
217 5 0.00
218 130 0.13
219 4 0.00
220 59 0.06
221 1 0.00
223 94 0.09
224 134 0.13
225 122 0.12
226 117 0.12
227 12 0.01
229 2 0.00
237 5 0.00
238 2 0.00
239 64 0.06
241 3 0.00
242 24 0.02
243 4 0.00
244 89 0.09
245 11 0.01
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (219 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCG
TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAAATAC
CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATT
GAAATTACCTCAGCGTGTCCCGAG
Found at i:131867042 original size:61 final size:61
Alignment explanation
Indices: 131866915--131867093 Score: 191
Period size: 61 Copynumber: 2.8 Consensus size: 61
131866905 AACAGAAATT
* * ** *
131866915 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTCTTA
1 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACATAC-TA
* *
131866977 -AAAATACCTCAGCGCGTCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGAACATAC-A
1 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ACATACTA
*
131867037 GAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 G---A---A-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
131867094 CTGATTTTGA
Statistics
Matches: 98, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
60 1 0.01
61 48 0.49
62 3 0.03
64 1 0.01
67 1 0.01
68 44 0.45
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (61 bp):
GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGACATACTA
Found at i:131867170 original size:54 final size:54
Alignment explanation
Indices: 131867070--131867175 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
131867060 GTCCCGAGGC
*
131867070 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
131867124 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
131867176 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:131867291 original size:140 final size:140
Alignment explanation
Indices: 131867034--131867792 Score: 1421
Period size: 140 Copynumber: 5.4 Consensus size: 140
131867024 AGTTGAACAT
* * *
131867034 ACAGAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 ACAG-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
131867099 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
65 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
131867164 GTAAATTGAAA
130 GTAAATTGAAA
131867175 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
131867240 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
131867305 TAAATTGAAA
131 TAAATTGAAA
*
131867315 GCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
* * *
131867380 TTGAAAAAGTAGAAGTTAAAAGGTTCAACCCACCTCTTGCAATATGAGTTGATTCTTGATCAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
131867445 TAAATTGAAA
131 TAAATTGAAA
*
131867455 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAACTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
*
131867520 TTGAAAAAATAG-AATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
131867584 TAAATTGAAA
131 TAAATTGAAA
131867594 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
131867659 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
131867724 TAAATTGAAA
131 TAAATTGAAA
131867734 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
131867793 TTGAAATTAA
Statistics
Matches: 602, Mismatches: 15, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
139 134 0.22
140 464 0.77
141 4 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (140 bp):
ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
TAAATTGAAA
Found at i:131867598 original size:419 final size:421
Alignment explanation
Indices: 131867034--131867792 Score: 1450
Period size: 419 Copynumber: 1.8 Consensus size: 421
131867024 AGTTGAACAT
* * *
131867034 ACAGAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 ACAGAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAACTGAT
*
131867099 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
66 TTTGAAAAAATAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
131867164 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
131 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
131867229 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
196 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
*
131867294 CTTGAACAACGTAAATTGAAAGCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
261 CTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
131867359 CTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAGTTAAAAGGTTCAACCCACCTCTTGCAATA
326 CTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAGTTAAAAGGTTCAACCCACCTCTTGCAATA
131867424 TGAGTTGATTCTTGATCAACGTAAATTGAAA
391 TGAGTTGATTCTTGATCAACGTAAATTGAAA
*
131867455 ACAG-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAACTGAT
1 ACAGAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAACTGAT
131867519 TTTGAAAAAATAG-AATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
66 TTTGAAAAAATAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
131867583 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
131 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
131867648 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
196 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
131867713 CTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
261 CTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
131867778 CTCTCGCAATATGAG
326 CTCTCGCAATATGAG
131867793 TTGAAATTAA
Statistics
Matches: 332, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
419 260 0.78
420 68 0.20
421 4 0.01
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (421 bp):
ACAGAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAACTGAT
TTTGAAAAAATAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
CTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
CTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAGTTAAAAGGTTCAACCCACCTCTTGCAATA
TGAGTTGATTCTTGATCAACGTAAATTGAAA
Found at i:131867680 original size:279 final size:280
Alignment explanation
Indices: 131867034--131867791 Score: 1419
Period size: 279 Copynumber: 2.7 Consensus size: 280
131867024 AGTTGAACAT
* * *
131867034 ACAGAAAATTGACAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 ACAG-AAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
131867099 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
65 TTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAAC
131867164 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
130 GTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
* *
131867229 ATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
195 ATGAACTGATTTTGAAAAAATAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT
131867294 CTTGAACAACGTAAATTGAAA
260 CTTGAACAACGTAAATTGAAA
*
131867315 GCAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
* * *
131867380 TTGAAAAAGTAGAAGTTAAAAGGTTCAACCCACCTCTTGCAATATGAGTTGATTCTTGATCAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
131867445 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
131 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
131867510 TGAACTGATTTTGAAAAAATAG-AATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
196 TGAACTGATTTTGAAAAAATAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
131867574 TTGAACAACGTAAATTGAAA
261 TTGAACAACGTAAATTGAAA
131867594 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
131867659 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
66 TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
131867724 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
131 TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
131867789 TGA
196 TGA
131867792 GTTGAAATTA
Statistics
Matches: 464, Mismatches: 13, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
279 256 0.55
280 205 0.44
281 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (280 bp):
ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
TTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACG
TAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
TGAACTGATTTTGAAAAAATAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
TTGAACAACGTAAATTGAAA
Found at i:131867729 original size:54 final size:54
Alignment explanation
Indices: 131867629--131867734 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
131867619 GACCTGAGGC
*
131867629 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
131867683 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
131867735 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:131867859 original size:72 final size:71
Alignment explanation
Indices: 131867725--131867890 Score: 235
Period size: 72 Copynumber: 2.3 Consensus size: 71
131867715 TGAACAACGT
* * * *
131867725 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
131867790 GAGTTG
66 GAGTTG
*
131867796 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
*
131867861 TTAGTTG
65 TGAGTTG
**
131867868 ATTTTGAAAAACAAAAATT-AAAA
1 AAATT-AAAAACAAAAATTGAAAA
131867891 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
71 12 0.14
72 69 0.81
73 4 0.05
ACGTcount: A:0.42, C:0.21, G:0.14, T:0.23
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:131867989 original size:122 final size:124
Alignment explanation
Indices: 131867765--131868011 Score: 356
Period size: 122 Copynumber: 2.0 Consensus size: 124
131867755 GCGTGACCTG
* *
131867765 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
*
131867830 TGCCCCGAGGCTCAACTCACCTCTAGCAATATTAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
131867890 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* * * * *
131867952 TGTCCTGAGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
131868011 A
1 A
131868012 ATACCTCAAC
Statistics
Matches: 110, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
121 16 0.15
122 59 0.54
123 7 0.06
124 1 0.01
125 27 0.25
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.26
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:131868032 original size:71 final size:70
Alignment explanation
Indices: 131867890--131868064 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
131867880 AAAAATTAAA
* * * * * *
131867890 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
131867954 TCCTG
66 TCCTG
* *
131867959 AGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
*
131868024 GTCTTG
65 GTCCTG
*
131868030 AGGCTCAACTCA-TCTCTCACAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
131868065 CCCTTGAAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 25 0.27
70 6 0.07
71 61 0.66
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.30
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
TCCTG
Found at i:131869277 original size:26 final size:26
Alignment explanation
Indices: 131869241--131869350 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
131869231 TGATACAAAT
131869241 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
131869267 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
131869293 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
131869319 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
131869345 TGATAA
1 TGATAA
131869351 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:131871382 original size:136 final size:137
Alignment explanation
Indices: 131871137--131871422 Score: 520
Period size: 136 Copynumber: 2.1 Consensus size: 137
131871127 GAGTAGTCTC
131871137 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
131871202 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131871267 ACTGTTA
131 ACTGTTA
*
131871274 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
131871338 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
131871403 ACTGTTA
131 ACTGTTA
**
131871410 CCTGAATGGGCTT
1 CCCAAATGGGCTT
131871423 CGGCCCAATG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
136 124 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:131879591 original size:12 final size:12
Alignment explanation
Indices: 131879571--131879606 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
131879561 TGGGATATGC
*
131879571 AATGTATGAATG
1 AATGCATGAATG
131879583 AATGCATGAATG
1 AATGCATGAATG
131879595 AATGCATGAATG
1 AATGCATGAATG
131879607 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:131881613 original size:10 final size:11
Alignment explanation
Indices: 131881574--131881613 Score: 52
Period size: 10 Copynumber: 4.0 Consensus size: 11
131881564 GGTATTTAAA
131881574 ATATATA-TAT
1 ATATATAGTAT
131881584 ATATATA-TAT
1 ATATATAGTAT
131881594 ATATAT-GTAT
1 ATATATAGTAT
131881604 ATA-ATAGTAT
1 ATATATAGTAT
131881614 TTAAGAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.07
10 26 0.93
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (11 bp):
ATATATAGTAT
Found at i:131881625 original size:2 final size:2
Alignment explanation
Indices: 131881574--131881606 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
131881564 GGTATTTAAA
*
131881574 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
131881607 ATAGTATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:131882208 original size:31 final size:32
Alignment explanation
Indices: 131882172--131882244 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 32
131882162 TTTTTTTAGT
* *
131882172 TTTTTTTTGGGTTAGGTTTTTCTTTTTTCTTC
1 TTTTTTTGGGGTTAAGTTTTTCTTTTTTCTTC
*
131882204 TTTTTTTGGGGGGTTAAGTTTTTCTTTTTTCTTT
1 TTTTTTT--GGGGTTAAGTTTTTCTTTTTTCTTC
131882238 TTTTTTT
1 TTTTTTT
131882245 TTTTGGGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
32 7 0.19
34 29 0.81
ACGTcount: A:0.04, C:0.07, G:0.16, T:0.73
Consensus pattern (32 bp):
TTTTTTTGGGGTTAAGTTTTTCTTTTTTCTTC
Found at i:131882218 original size:34 final size:35
Alignment explanation
Indices: 131882180--131882266 Score: 115
Period size: 36 Copynumber: 2.5 Consensus size: 35
131882170 GTTTTTTTTT
131882180 GGGTTAGGTTTTTCTTTTTTC-TTCTTTTTTTGGG
1 GGGTTAGGTTTTTCTTTTTTCTTTCTTTTTTTGGG
* * **
131882214 GGGTTAAGTTTTTCTTTTTTCTTTTTTTTTTTTTTG
1 GGGTTAGGTTTTTCTTTTTTC-TTTCTTTTTTTGGG
131882250 GGGTTAGGTTTTT-TTTT
1 GGGTTAGGTTTTTCTTTT
131882267 GAGGGGGCTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
34 20 0.43
35 4 0.09
36 22 0.48
ACGTcount: A:0.05, C:0.06, G:0.21, T:0.69
Consensus pattern (35 bp):
GGGTTAGGTTTTTCTTTTTTCTTTCTTTTTTTGGG
Found at i:131887522 original size:21 final size:19
Alignment explanation
Indices: 131887498--131887541 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
131887488 CATCAAAACC
*
131887498 AAAACATCATAAATCAAATTA
1 AAAACAACATAAAT--AATTA
*
131887519 AAAATAACATAAATAATTA
1 AAAACAACATAAATAATTA
131887538 AAAA
1 AAAA
131887542 ATATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
21 12 0.57
ACGTcount: A:0.68, C:0.09, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAACAACATAAATAATTA
Found at i:131888473 original size:11 final size:11
Alignment explanation
Indices: 131888457--131888481 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
131888447 AAATTAAAAA
131888457 TAAAAATAATT
1 TAAAAATAATT
131888468 TAAAAATAATT
1 TAAAAATAATT
131888479 TAA
1 TAA
131888482 TATTAAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAAAAATAATT
Found at i:131888487 original size:17 final size:18
Alignment explanation
Indices: 131888444--131888489 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
131888434 TTAAAGTTAC
*
131888444 TTAAAATTAAAAATAAAA
1 TTAATATTAAAAATAAAA
* *
131888462 ATAAT-TTAAAAAT-AAT
1 TTAATATTAAAAATAAAA
131888478 TTAATATTAAAA
1 TTAATATTAAAA
131888490 TCGAGCCGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 6 0.26
17 14 0.61
18 3 0.13
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TTAATATTAAAAATAAAA
Found at i:131894889 original size:2 final size:2
Alignment explanation
Indices: 131894884--131894923 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
131894874 TTTATGTGTG
131894884 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
131894924 TTTTGTGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:131896094 original size:17 final size:18
Alignment explanation
Indices: 131896065--131896104 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
131896055 AGTGGTGCTA
*
131896065 ACATAATTTAAATTCAAC
1 ACATAATTTAAATTAAAC
131896083 ACATAA-TTAAATTAAAC
1 ACATAATTTAAATTAAAC
131896100 A-ATAA
1 ACATAA
131896105 AGCATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.19
17 11 0.52
18 6 0.29
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.30
Consensus pattern (18 bp):
ACATAATTTAAATTAAAC
Found at i:131898075 original size:17 final size:15
Alignment explanation
Indices: 131898041--131898071 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
131898031 CATATTATTT
131898041 TTTAAAAAATTAATA
1 TTTAAAAAATTAATA
*
131898056 TTTAAAAAATTTATA
1 TTTAAAAAATTAATA
131898071 T
1 T
131898072 ATTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAAAAAATTAATA
Found at i:131899331 original size:131 final size:131
Alignment explanation
Indices: 131899084--131899333 Score: 383
Period size: 131 Copynumber: 1.9 Consensus size: 131
131899074 AAGATGTGAA
*
131899084 TGAAATTTTGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
1 TGAAATTTCGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
* * * ** *
131899149 CACGATTCAACGAATTGCTAAATATCGAATCTCGTCTTTTTTTTTAAGAATTTTAAAAGACACGA
66 CACGATTCAACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGACACGA
131899214 G
131 G
* * * *
131899215 TGAAATTTCGAAGTGATATTCGATTATTTTGAGCAAATGCCAAATTGCAACCCAACACGTTAGGG
1 TGAAATTTCGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
* *
131899280 CACGATTCCACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGACGAATTTT
66 CACGATTCAACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAATTTT
131899334 TGAATGAATA
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
131 106 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (131 bp):
TGAAATTTCGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
CACGATTCAACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGACACGA
G
Found at i:131899916 original size:15 final size:16
Alignment explanation
Indices: 131899883--131899916 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
131899873 AAAGTTAACA
*
131899883 AAATATATGATAGTAC
1 AAATATATGATAATAC
131899899 AAATATAT-ATAATAC
1 AAATATATGATAATAC
131899914 AAA
1 AAA
131899917 AAATACATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (16 bp):
AAATATATGATAATAC
Found at i:131902349 original size:44 final size:43
Alignment explanation
Indices: 131902293--131902620 Score: 133
Period size: 44 Copynumber: 7.5 Consensus size: 43
131902283 CTTTGATTTG
131902293 CTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAACCTA
1 CTCCACTGCAACTTCAGGGAAATGAGAT-TAAAATTTCAACCTA
* * ** ** * * * *
131902337 CTCCACTACAACTTTAGGGAGCT-AGATTAGTGACTTAAATCTG
1 CTCCACTGCAACTTCAGGGAAATGAGATTA-AAATTTCAACCTA
* * * * *** * * *
131902380 TTTCACTGCAACTTCA-GGAAGTTAAGATTCATCGTCTTCGATCTG
1 CTCCACTGCAACTTCAGGGAA-ATGAGATT-AAAAT-TTCAACCTA
131902425 CTCCACTGCAACTTCAGGGAAATGAGATCTAAAATTTCAACCTA
1 CTCCACTGCAACTTCAGGGAAATGAGAT-TAAAATTTCAACCTA
* * ** * ** * * * *
131902469 CTCCACTACAACTTTAGGGAGCT-AGGTTAGTGACTTAAATCTG
1 CTCCACTGCAACTTCAGGGAAATGAGATTA-AAATTTCAACCTA
* * * **** * * *
131902512 CTTCACTGCAACTTCA-GGAAGTCAAGATTCGTCGTCTTCGATCTG
1 CTCCACTGCAACTTCAGGGAAAT-GAGATT-AAAAT-TTCAACCTA
*
131902557 CTCCACTGCAACTTCAGGGAAACGAGATCTAAAATTTCAACCTA
1 CTCCACTGCAACTTCAGGGAAATGAGAT-TAAAATTTCAACCTA
* *
131902601 CTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGA
131902621 GCTAGGTTAG
Statistics
Matches: 203, Mismatches: 67, Indels: 28
0.68 0.22 0.09
Matches are distributed among these distances:
42 11 0.05
43 47 0.23
44 79 0.39
45 56 0.28
46 10 0.05
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.28
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGGAAATGAGATTAAAATTTCAACCTA
Found at i:131902432 original size:45 final size:45
Alignment explanation
Indices: 131902374--131902574 Score: 144
Period size: 45 Copynumber: 4.5 Consensus size: 45
131902364 TAGTGACTTA
* *
131902374 AATCTGTTTCACTGCAACTTCAGGAAGTTAAGATTCATCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGTTAAGATTCATCGTCTTC
* * * ***
131902419 GATCTGCTCCACTGCAACTTCAGGGAA-ATGAGA-TCTAAAAT-TTC
1 AATCTGCTCCACTGCAACTTCA-GGAAGTTAAGATTC-ATCGTCTTC
* * * * * * * * *
131902463 AACCTACTCCACTACAACTTTAGGGAGCT-AGGTT-AGT-GACTTA
1 AATCTGCTCCACTGCAACTTCAGGAAGTTAAGATTCA-TCGTCTTC
* * *
131902506 AATCTGCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGAAGTTAAGATTCATCGTCTTC
*
131902551 GATCTGCTCCACTGCAACTTCAGG
1 AATCTGCTCCACTGCAACTTCAGG
131902575 GAAACGAGAT
Statistics
Matches: 113, Mismatches: 34, Indels: 18
0.68 0.21 0.11
Matches are distributed among these distances:
42 1 0.01
43 28 0.25
44 29 0.26
45 51 0.45
46 4 0.04
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGAAGTTAAGATTCATCGTCTTC
Found at i:131903006 original size:132 final size:132
Alignment explanation
Indices: 131902181--131902983 Score: 1214
Period size: 132 Copynumber: 6.1 Consensus size: 132
131902171 TCCACTGGAG
** * * * *
131902181 ACGAGATCTGCAATTGTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATC
1 ACGAGATCTAAAATT-TCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATC
* * * * * * *
131902246 TGCTTCGCTGCAATTTCAGGAAGCCAAGATTCGTCGTCTTTGATTTGCTCCACTGCAACTTCAGG
65 TGCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGG
131902311 GAA
130 GAA
* *
131902314 ATGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGATTAGTGACTTAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
** * **
131902379 GTTTCACTGCAACTTCAGGAAG-TTAAGATTCATCGTCTTCGATCTGCTCCACTGCAACTTCAGG
66 GCCTCACTGCAACTTCAGGAAGCCT-AGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGG
131902443 GAA
130 GAA
*
131902446 ATGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
* * * *
131902511 GCTTCACTGCAACTTCAGGAAGTCAAGATTCGTCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
66 GCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
131902576 AA
131 AA
131902578 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
*
131902643 GCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCATTGCAACTTCAGGG
66 GCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
131902708 AA
131 AA
* * * * * *
131902710 ACGAGACCTAAAATTTTAGCATACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
*
131902775 GCCTCACTGCAACTTCAGGAAGCCTAGATTCACCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
66 GCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
131902840 AA
131 AA
* * * *
131902842 ACGAGACCTAAAATTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGTTGGTGGCTTAAATCT
1 ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
* *
131902907 GCCTCACTGCAACTTCAAGAAGCCTAGATTCGCCATCTTCGATCTGCTCCACTGCAACTTCAGGG
66 GCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
131902972 AA
131 AA
131902974 AC-AGGATCTA
1 ACGA-GATCTA
131902984 TGGGATTCAC
Statistics
Matches: 626, Mismatches: 41, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
131 1 0.00
132 613 0.98
133 12 0.02
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (132 bp):
ACGAGATCTAAAATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGTTAGTGACTTAAATCT
GCCTCACTGCAACTTCAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGG
AA
Found at i:131907951 original size:42 final size:42
Alignment explanation
Indices: 131907904--131907990 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
131907894 ATGTCATCGG
131907904 TTCCCATTTGATCTCCTCCCCCGTTAACCATGCTCTTCTTCT
1 TTCCCATTTGATCTCCTCCCCCGTTAACCATGCTCTTCTTCT
*
131907946 TTCCCATTTGATCTCCTCCCCCGTTAACCGTGCTCTTCTTCT
1 TTCCCATTTGATCTCCTCCCCCGTTAACCATGCTCTTCTTCT
131907988 TTC
1 TTC
131907991 TTGCTTCTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.10, C:0.40, G:0.08, T:0.41
Consensus pattern (42 bp):
TTCCCATTTGATCTCCTCCCCCGTTAACCATGCTCTTCTTCT
Found at i:131908774 original size:5 final size:5
Alignment explanation
Indices: 131908764--131908804 Score: 73
Period size: 5 Copynumber: 8.0 Consensus size: 5
131908754 AATAATTAAG
131908764 TATAT TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
131908805 ATAAAAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 30 0.86
6 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:131910481 original size:39 final size:40
Alignment explanation
Indices: 131910374--131910484 Score: 111
Period size: 38 Copynumber: 2.8 Consensus size: 40
131910364 GACCTCGAGT
* **
131910374 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGATAGAGC
** ** *
131910415 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
131910453 CGATGAGACACTGGGTGTCAACTATTACTTCG
1 CGATGAGACACTGGGTGTCAACTATTACTTCG
131910485 AACTATCCGA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
38 19 0.34
39 19 0.34
40 1 0.02
41 15 0.27
42 2 0.04
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGATAGAGC
Found at i:131910495 original size:39 final size:39
Alignment explanation
Indices: 131910374--131910498 Score: 96
Period size: 39 Copynumber: 3.2 Consensus size: 39
131910364 GACCTCGAGT
* * *
131910374 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATA-GATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTC-GA-ACTATC
** ** * *
131910415 CGATGAGGTACTGGGTACCAACT-TTACTTCG-GCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
131910453 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
131910492 CGATGAG
1 CGATGAG
131910499 GCAGTGGATG
Statistics
Matches: 64, Mismatches: 15, Indels: 12
0.70 0.16 0.13
Matches are distributed among these distances:
37 1 0.02
38 20 0.31
39 22 0.34
40 4 0.06
41 15 0.23
42 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
Found at i:131918170 original size:131 final size:131
Alignment explanation
Indices: 131918005--131918254 Score: 392
Period size: 131 Copynumber: 1.9 Consensus size: 131
131917995 AAGATGTGAA
*
131918005 TGAAATTTTGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
1 TGAAATTTCGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
* *
131918070 CACGATTCAACGAATTGCTAAATATCAAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGACATGA
66 CACGATTCAACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGACATGA
131918135 G
131 G
* * * *
131918136 TGAAATTTCGAAGTGATATTCGATTATTTTGAGCAAATGCCAAATTGCAACCCAACACGTTAGGG
1 TGAAATTTCGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
*** * *
131918201 CACGATTCCGTGAATTGCCAAACATCAAATCTTGTCTTCGTTTTGACGAATTTT
66 CACGATTCAACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAATTTT
131918255 TGAATGAATA
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 107 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (131 bp):
TGAAATTTCGAAGGGATACTCGATTATTTTGAGCAAACGCAAAATTGCAACCCAACACGTTAGGG
CACGATTCAACGAATTGCCAAACATCAAATCTCGTCTTCGTTTTGAAGAATTTTAAAAGACATGA
G
Found at i:131918661 original size:28 final size:25
Alignment explanation
Indices: 131918613--131918663 Score: 66
Period size: 28 Copynumber: 1.9 Consensus size: 25
131918603 AGTCAAAAGC
131918613 CATTATATGTATATAAATATATGAA
1 CATTATATGTATATAAATATATGAA
*
131918638 CATTATTATGATATATACACTATATG
1 CATTA-TATG-TATATA-AATATATG
131918664 TATAATAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 4 0.18
27 6 0.27
28 7 0.32
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (25 bp):
CATTATATGTATATAAATATATGAA
Found at i:131920389 original size:46 final size:46
Alignment explanation
Indices: 131920302--131920390 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
131920292 CAATTAGTGA
*
131920302 TTGTGGTGCAAAGTCTTATATTTTACCTTCCATTCAGTAATGGTGC
1 TTGTGGTGCAAAGTCTTATATTTTACCTTCCATTCACTAATGGTGC
* * *
131920348 TTGTGGTGTAAAGTCTTATATTTTATCTTTCATGT-ACTAATGG
1 TTGTGGTGCAAAGTCTTATATTTTACCTTCCAT-TCACTAATGG
131920391 CTACTAGTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
46 37 0.97
47 1 0.03
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.45
Consensus pattern (46 bp):
TTGTGGTGCAAAGTCTTATATTTTACCTTCCATTCACTAATGGTGC
Found at i:131922140 original size:3 final size:3
Alignment explanation
Indices: 131922132--131922181 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
131922122 ACTTTACATA
131922132 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
131922180 AT
1 AT
131922182 CAAACGTAGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:131924120 original size:20 final size:18
Alignment explanation
Indices: 131924084--131924128 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
131924074 AAACCTTCAA
131924084 TTTTCCCTTTCTTCTTTC
1 TTTTCCCTTTCTTCTTTC
131924102 TTTTCTCCTTTCTTTCTTTC
1 TTTTC-CCTTTC-TTCTTTC
131924122 -TTTCCCT
1 TTTTCCCT
131924129 GCTTTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 10 0.40
20 7 0.28
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTCCCTTTCTTCTTTC
Found at i:131924363 original size:20 final size:20
Alignment explanation
Indices: 131924340--131924379 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
131924330 TATAATTATT
131924340 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
131924360 TAATTAATAAATATCTTTTA
1 TAATTAATAAATATCTTTTA
131924380 ATACTTAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTAATAAATATCTTTTA
Found at i:131926053 original size:55 final size:55
Alignment explanation
Indices: 131925969--131926078 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
131925959 GTATGAAAGT
131925969 GAGTTGATAACATCAGTTTTGACTTTATCGACCGCGATCCCTTTAGCGCAAACAA
1 GAGTTGATAACATCAGTTTTGACTTTATCGACCGCGATCCCTTTAGCGCAAACAA
131926024 GAGTTGATAACATCAGTTTTGACTTTATCGACCGCGATCCCTTTAGCGCAAACAA
1 GAGTTGATAACATCAGTTTTGACTTTATCGACCGCGATCCCTTTAGCGCAAACAA
131926079 TATGTCCTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (55 bp):
GAGTTGATAACATCAGTTTTGACTTTATCGACCGCGATCCCTTTAGCGCAAACAA
Found at i:131931356 original size:2 final size:2
Alignment explanation
Indices: 131931345--131931385 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
131931335 ATTAAGTTAT
131931345 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
131931386 AAGTAAAAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:131931404 original size:16 final size:16
Alignment explanation
Indices: 131931385--131931428 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
131931375 ATATATATAT
*
131931385 AAAGTAAAAGGAATA-A
1 AAAG-AAAAAGAATAGA
131931401 AAAGAAAAAGAATAGAA
1 AAAGAAAAAGAATAG-A
131931418 AAAGAAAAAGA
1 AAAGAAAAAGA
131931429 GAATGAAACG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 9 0.36
16 4 0.16
17 12 0.48
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (16 bp):
AAAGAAAAAGAATAGA
Found at i:131932442 original size:18 final size:18
Alignment explanation
Indices: 131932421--131932593 Score: 138
Period size: 18 Copynumber: 9.6 Consensus size: 18
131932411 TAACTGATTA
131932421 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
131932439 TTACCGGATAATTGACTG
1 TTACTGAATAATTGACTG
* * *
131932457 TTACTGAATAACTGAATA
1 TTACTGAATAATTGACTG
*
131932475 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* * *
131932493 TTATTGAATAACTGATTG
1 TTACTGAATAATTGACTG
* *
131932511 TCACTGAATGAA-TGACTA
1 TTACTGAAT-AATTGACTG
* * *
131932529 TTTCTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
*
131932548 TTACTGAAT-ATCTGA-TT
1 TTACTGAATAAT-TGACTG
131932565 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
131932583 TTACTGGATAA
1 TTACTGAATAA
131932594 ACGATCAATT
Statistics
Matches: 122, Mismatches: 25, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
17 17 0.14
18 91 0.75
19 14 0.11
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.39
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:131932486 original size:36 final size:35
Alignment explanation
Indices: 131932421--131932673 Score: 143
Period size: 36 Copynumber: 6.8 Consensus size: 35
131932411 TAACTGATTA
* * * *
131932421 TTACTGAATAATTGACTGTTACCGGATAATTGACTG
1 TTACTGAATAACTGAATGTTACTGAATAATTGA-TG
* *
131932457 TTACTGAATAACTGAATATTACTGAATAATTGATCA
1 TTACTGAATAACTGAATGTTACTGAATAATTGAT-G
* * * *
131932493 TTATTGAATAACTGATTGTCACTGAATGAA-TGACTA
1 TTACTGAATAACTGAATGTTACTGAAT-AATTGA-TG
* * *
131932529 TTTCTGAATAACTTAATTGTTACTGAAT-ATCTGATT
1 TTACTGAATAACTGAA-TGTTACTGAATAAT-TGATG
* *
131932565 TTACTGAATAATTGACTGTTACTGGATAAACGATCAATTGATCG
1 TTACTGAATAACTGAATGTTACT-G----A--AT-AATTGAT-G
* ** * *
131932609 ATACTGAATAACTGGTTATTATTGAATAATTGATTG
1 TTACTGAATAACTGAATGTTACTGAATAATTGA-TG
*
131932645 TTACCGAATAACT-AACTGTTACTGAATAA
1 TTACTGAATAACTGAA-TGTTACTGAATAA
131932674 ATAATTGTTC
Statistics
Matches: 166, Mismatches: 33, Indels: 36
0.71 0.14 0.15
Matches are distributed among these distances:
35 9 0.05
36 110 0.66
37 19 0.11
39 1 0.01
40 1 0.01
42 2 0.01
43 5 0.03
44 19 0.11
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (35 bp):
TTACTGAATAACTGAATGTTACTGAATAATTGATG
Found at i:131932517 original size:54 final size:54
Alignment explanation
Indices: 131932409--131932593 Score: 178
Period size: 54 Copynumber: 3.4 Consensus size: 54
131932399 AAAGGTATAA
* * * * *
131932409 AATAACTGATTATTACTGAATAATTGA-CTGTTACCGGATAATTGACTGTTACTG
1 AATAACTGACTATTACTGAATAATTGATC-GTTACTGAATAACTGATTGTTACTG
* * * *
131932463 AATAACTGAATATTACTGAATAATTGATCATTATTGAATAACTGATTGTCACTG
1 AATAACTGACTATTACTGAATAATTGATCGTTACTGAATAACTGATTGTTACTG
* * * *
131932517 AATGAA-TGACTATTTCTGAATAACTTAATTGTTACTGAATATCTGATT-TTACTG
1 AAT-AACTGACTATTACTGAATAA-TTGATCGTTACTGAATAACTGATTGTTACTG
* * *
131932571 AATAATTGACTGTTACTGGATAA
1 AATAACTGACTATTACTGAATAA
131932594 ACGATCAATT
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
53 2 0.02
54 84 0.78
55 22 0.20
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (54 bp):
AATAACTGACTATTACTGAATAATTGATCGTTACTGAATAACTGATTGTTACTG
Found at i:131932682 original size:18 final size:18
Alignment explanation
Indices: 131932631--131932686 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
131932621 TGGTTATTAT
* *
131932631 TGAATAATTGATTGTTAC
1 TGAATAAATAATTGTTAC
* * *
131932649 CGAATAACTAACTGTTAC
1 TGAATAAATAATTGTTAC
131932667 TGAATAAATAATTGTT-C
1 TGAATAAATAATTGTTAC
131932684 TGA
1 TGA
131932687 TTGTTAATGA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 4 0.13
18 27 0.87
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (18 bp):
TGAATAAATAATTGTTAC
Found at i:131933545 original size:27 final size:27
Alignment explanation
Indices: 131933506--131933563 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
131933496 TCAGTATTAT
* *
131933506 CCACGACCTTCCGGGTATTGGGACTTC
1 CCACGACCATCCGAGTATTGGGACTTC
131933533 CCACGACCATCCGAGTATTGGGACTTC
1 CCACGACCATCCGAGTATTGGGACTTC
131933560 CCAC
1 CCAC
131933564 AATCCTTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.36, G:0.22, T:0.22
Consensus pattern (27 bp):
CCACGACCATCCGAGTATTGGGACTTC
Found at i:131933823 original size:92 final size:92
Alignment explanation
Indices: 131933706--131933947 Score: 290
Period size: 92 Copynumber: 2.6 Consensus size: 92
131933696 GATCAGATAG
* * *
131933706 TGGTACATAGCGTAGCTAACATACATGCGATATAGTGCAATGTGGTAATCTGCTATA-TCGATAG
1 TGGTACGTAGCATAGCTAACATACATGCGATATAGTGCAATGTGGTAATCCGCTATACT-GATAG
*
131933770 GTTGCAATAAAACTACCAGTTCAATCAA
65 GTTACAATAAAACTACCAGTTCAATCAA
* * * * *
131933798 TGGTACGTAGCATAGCTAACGTACATACGGTACAGTGCAATATGGTAATCCGCTATACTGATAGG
1 TGGTACGTAGCATAGCTAACATACATGCGATATAGTGCAATGTGGTAATCCGCTATACTGATAGG
* * ** *
131933863 TTACAGTGAAACTGTCAGTTCAGTCAA
66 TTACAATAAAACTACCAGTTCAATCAA
* * **
131933890 TGGTACGTAGCATAGCTAACATATATGC-AGTATAGTACAATGCAGTAATCCGCTATAC
1 TGGTACGTAGCATAGCTAACATACATGCGA-TATAGTGCAATGTGGTAATCCGCTATAC
131933948 CGTTATCAGT
Statistics
Matches: 125, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
92 124 0.99
93 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (92 bp):
TGGTACGTAGCATAGCTAACATACATGCGATATAGTGCAATGTGGTAATCCGCTATACTGATAGG
TTACAATAAAACTACCAGTTCAATCAA
Found at i:131934489 original size:21 final size:22
Alignment explanation
Indices: 131934456--131934512 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
131934446 GTGAAGGGTT
*
131934456 GCACACGATCGTGTGGAAG-AG
1 GCACACGACCGTGTGGAAGCAG
*
131934477 GCACACGCCCGTGT-GAAGCAG
1 GCACACGACCGTGTGGAAGCAG
* *
131934498 GGACACGGCCGTGTG
1 GCACACGACCGTGTG
131934513 AACTAGCCGT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 4 0.13
21 26 0.87
ACGTcount: A:0.23, C:0.26, G:0.39, T:0.12
Consensus pattern (22 bp):
GCACACGACCGTGTGGAAGCAG
Found at i:131935417 original size:13 final size:13
Alignment explanation
Indices: 131935399--131935423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131935389 GGTTTGTTTA
131935399 TTAAACTAATTAT
1 TTAAACTAATTAT
131935412 TTAAACTAATTA
1 TTAAACTAATTA
131935424 ACTAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TTAAACTAATTAT
Found at i:131938170 original size:6 final size:5
Alignment explanation
Indices: 131938161--131938248 Score: 79
Period size: 6 Copynumber: 16.0 Consensus size: 5
131938151 ATGAAAATTG
*
131938161 AAATGA AAATAA AAATCA AAAGA AAATA AGAATA AAATA AAATA AAATA
1 AAAT-A AAAT-A AAAT-A AAATA AAATA A-AATA AAATA AAATA AAATA
131938210 ATAATA AGAAT- AAATA ATAATA AGAATAA AAATA AAATA
1 A-AATA A-AATA AAATA A-AATA A-AAT-A AAATA AAATA
131938249 GGAGAATTCA
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
4 3 0.04
5 29 0.41
6 37 0.52
7 2 0.03
ACGTcount: A:0.74, C:0.01, G:0.06, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:131938181 original size:7 final size:6
Alignment explanation
Indices: 131938147--131938246 Score: 59
Period size: 6 Copynumber: 17.7 Consensus size: 6
131938137 ATGTCTTTCA
* ** * * * *
131938147 AAAAAT GAAAAT TGAAAT GAAAAT AAAAAT CAAAA- GAAAAT AAGAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
* * * *
131938194 -AAAAT -AAAAT -AAAAT AATAAT AAGAAT --AAAT AATAAT AAGAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
131938237 AAAAAT AAAA
1 AAAAAT AAAA
131938247 TAGGAGAATT
Statistics
Matches: 73, Mismatches: 17, Indels: 8
0.74 0.17 0.08
Matches are distributed among these distances:
4 3 0.04
5 18 0.25
6 52 0.71
ACGTcount: A:0.73, C:0.01, G:0.07, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:131938202 original size:16 final size:16
Alignment explanation
Indices: 131938161--131938248 Score: 80
Period size: 16 Copynumber: 5.6 Consensus size: 16
131938151 ATGAAAATTG
*
131938161 AAATGAAAATAAAAATCA
1 AAAT-AAAATAAGAAT-A
*
131938179 AAAGAAAATAAGAATA
1 AAATAAAATAAGAATA
131938195 AAATAAAATAA-AAT-
1 AAATAAAATAAGAATA
131938209 -AAT--AATAAGAAT-
1 AAATAAAATAAGAATA
131938221 AAATAATAATAAGAATAA
1 AAATAA-AATAAGAAT-A
131938239 AAATAAAATA
1 AAATAAAATA
131938249 GGAGAATTCA
Statistics
Matches: 60, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
11 5 0.08
12 3 0.05
13 6 0.10
15 3 0.05
16 20 0.33
17 14 0.23
18 9 0.15
ACGTcount: A:0.74, C:0.01, G:0.06, T:0.19
Consensus pattern (16 bp):
AAATAAAATAAGAATA
Found at i:131938215 original size:27 final size:26
Alignment explanation
Indices: 131938166--131938248 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 26
131938156 AATTGAAATG
*
131938166 AAAATAAAAATCAAAAGAAAATAAGAAT
1 AAAAT-AAAAT-AAAATAAAATAAGAAT
131938194 AAAATAAAATAAAATAATAATAAGAAT
1 AAAATAAAATAAAATAA-AATAAGAAT
131938221 -AAATAATAATAAGAATAAAAATAA-AAT
1 AAAATAA-AATAA-AAT-AAAATAAGAAT
131938248 A
1 A
131938249 GGAGAATTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
26 12 0.24
27 22 0.45
28 13 0.27
29 2 0.04
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (26 bp):
AAAATAAAATAAAATAAAATAAGAAT
Found at i:131938243 original size:22 final size:22
Alignment explanation
Indices: 131938168--131938248 Score: 103
Period size: 22 Copynumber: 3.7 Consensus size: 22
131938158 TTGAAATGAA
*
131938168 AATAAAAATCAAAAGAAAATAAG
1 AATAAAAAT-AAAATAAAATAAG
*
131938191 AAT-AAAATAAAATAAAATAAT
1 AATAAAAATAAAATAAAATAAG
*
131938212 AATAAGAAT-AAATAATAATAAG
1 AATAAAAATAAAATAA-AATAAG
131938234 AATAAAAATAAAATA
1 AATAAAAATAAAATA
131938249 GGAGAATTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
21 20 0.40
22 22 0.44
23 8 0.16
ACGTcount: A:0.74, C:0.01, G:0.05, T:0.20
Consensus pattern (22 bp):
AATAAAAATAAAATAAAATAAG
Done.