Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 432 of 433
Found at i:131944465 original size:13 final size:13
Alignment explanation
Indices: 131944447--131944473 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
131944437 AAAGGGACAT
131944447 GCCCGTGTGCCAC
1 GCCCGTGTGCCAC
131944460 GCCCGTGTGCCAC
1 GCCCGTGTGCCAC
131944473 G
1 G
131944474 GCCATGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.07, C:0.44, G:0.33, T:0.15
Consensus pattern (13 bp):
GCCCGTGTGCCAC
Found at i:131945761 original size:13 final size:13
Alignment explanation
Indices: 131945745--131945787 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 13
131945735 ATCACAAAAT
131945745 AATTAAATTTAAA
1 AATTAAATTTAAA
131945758 AATTAAATTTAGCTAA
1 AATTAAATTTA---AA
131945774 AGATTAAATTTAAA
1 A-ATTAAATTTAAA
131945788 CTAATTACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 11 0.42
14 2 0.08
16 3 0.12
17 10 0.38
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (13 bp):
AATTAAATTTAAA
Found at i:131946332 original size:20 final size:21
Alignment explanation
Indices: 131946304--131946344 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
131946294 AAGAAATTTT
* *
131946304 AAATTATTTTA-ATTATAAAA
1 AAATCATTTTATATAATAAAA
131946324 AAATCATTTTATATAATAAAA
1 AAATCATTTTATATAATAAAA
131946345 CATTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATCATTTTATATAATAAAA
Found at i:131952549 original size:30 final size:30
Alignment explanation
Indices: 131952515--131952572 Score: 100
Period size: 30 Copynumber: 1.9 Consensus size: 30
131952505 TAGGCACTTC
131952515 CACACGGGT-GATCCACACGCCTGTGTGTGA
1 CACACGGGTAGA-CCACACGCCTGTGTGTGA
131952545 CACACGGGTAGACCACACGCCTGTGTGT
1 CACACGGGTAGACCACACGCCTGTGTGT
131952573 CATGGCCATG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.21, C:0.31, G:0.29, T:0.19
Consensus pattern (30 bp):
CACACGGGTAGACCACACGCCTGTGTGTGA
Found at i:131954726 original size:40 final size:39
Alignment explanation
Indices: 131954652--131954727 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 39
131954642 ATACGGTACC
* *
131954652 ACTTGGTGTGTAGGTTGGATGGGTTGATTTTATCCCCAT
1 ACTTGGTGTGTAGGCTGGATGGGTCGATTTTATCCCCAT
* *
131954691 ACTTGGTGTGTAGGGCTGGGTGGGTCGCTTTTATCCC
1 ACTTGGTGTGTA-GGCTGGATGGGTCGATTTTATCCC
131954728 TACATAGTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 12 0.38
40 20 0.62
ACGTcount: A:0.12, C:0.16, G:0.34, T:0.38
Consensus pattern (39 bp):
ACTTGGTGTGTAGGCTGGATGGGTCGATTTTATCCCCAT
Found at i:131954789 original size:61 final size:61
Alignment explanation
Indices: 131954694--131954835 Score: 250
Period size: 61 Copynumber: 2.3 Consensus size: 61
131954684 TCCCCATACT
131954694 TGGTGTGTAGGGCTGGGTGGGTCGCTTTTATCCCTACATAGTGTGCTGGGTTGGACGGAGA
1 TGGTGTGTAGGGCTGGGTGGGTCGCTTTTATCCCTACATAGTGTGCTGGGTTGGACGGAGA
*
131954755 TGGTGTGTAGGGCTGGGTGGGTCGCTTTTATCCCTACATGGTGTGCTGGGTTGGACGGAGA
1 TGGTGTGTAGGGCTGGGTGGGTCGCTTTTATCCCTACATAGTGTGCTGGGTTGGACGGAGA
* *
131954816 TGGTGTGCAGGG-TTGGTGGG
1 TGGTGTGTAGGGCTGGGTGGG
131954836 CATTACTGTT
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
60 7 0.09
61 71 0.91
ACGTcount: A:0.11, C:0.13, G:0.44, T:0.31
Consensus pattern (61 bp):
TGGTGTGTAGGGCTGGGTGGGTCGCTTTTATCCCTACATAGTGTGCTGGGTTGGACGGAGA
Found at i:131955889 original size:17 final size:18
Alignment explanation
Indices: 131955867--131955906 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
131955857 CCCAATTTCA
131955867 AAACCAGAAGCCC-AACT
1 AAACCAGAAGCCCAAACT
**
131955884 AAACCATCAGCCCAAACT
1 AAACCAGAAGCCCAAACT
131955902 AAACC
1 AAACC
131955907 CAATCCCAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.47, C:0.38, G:0.07, T:0.07
Consensus pattern (18 bp):
AAACCAGAAGCCCAAACT
Found at i:131956330 original size:2 final size:2
Alignment explanation
Indices: 131956320--131956355 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
131956310 TCTCTTTTTT
*
131956320 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
131956356 ATAAAAAGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:131957161 original size:3 final size:3
Alignment explanation
Indices: 131957155--131957195 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
131957145 TTTTTTTCAG
131957155 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
131957196 ATTTCTTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:131957371 original size:23 final size:23
Alignment explanation
Indices: 131957345--131957394 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
131957335 TTATATGATT
*
131957345 TTTTTTAATTTCAAACATTATTA
1 TTTTATAATTTCAAACATTATTA
* ** *
131957368 TTTTATACTTTTTAATATTATTA
1 TTTTATAATTTCAAACATTATTA
131957391 TTTT
1 TTTT
131957395 CAAGTTGTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTATAATTTCAAACATTATTA
Found at i:131957708 original size:21 final size:21
Alignment explanation
Indices: 131957677--131957739 Score: 99
Period size: 21 Copynumber: 3.0 Consensus size: 21
131957667 CTTACGGGGT
*
131957677 TTCGGTTTTCTCGACTAATCC
1 TTCGATTTTCTCGACTAATCC
*
131957698 TTTGATTTTCTCGACTAATCC
1 TTCGATTTTCTCGACTAATCC
*
131957719 TTCGATTTTCTCGACAAATCC
1 TTCGATTTTCTCGACTAATCC
131957740 CAACAAACGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.19, C:0.27, G:0.11, T:0.43
Consensus pattern (21 bp):
TTCGATTTTCTCGACTAATCC
Found at i:131960764 original size:22 final size:22
Alignment explanation
Indices: 131960699--131960768 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
131960689 CAAACGCTCA
* *
131960699 TGTGAAGAGGGGCACATTGCCG
1 TGTGAAGAGAGGCACATGGCCG
*** * * *
131960721 TGTGGCTA-AGGCATACGCCCG
1 TGTGAAGAGAGGCACATGGCCG
131960742 TGTGAAGAGAGGCACATGGCCG
1 TGTGAAGAGAGGCACATGGCCG
131960764 TGTGA
1 TGTGA
131960769 CTGAGGCACA
Statistics
Matches: 33, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
21 13 0.39
22 20 0.61
ACGTcount: A:0.23, C:0.20, G:0.39, T:0.19
Consensus pattern (22 bp):
TGTGAAGAGAGGCACATGGCCG
Found at i:131960776 original size:21 final size:21
Alignment explanation
Indices: 131960709--131960788 Score: 63
Period size: 21 Copynumber: 3.8 Consensus size: 21
131960699 TGTGAAGAGG
* * *
131960709 GGCACATTGCCGTGTGGCTAA
1 GGCACATGGCCGTGTGACTGA
* * * **
131960730 GGCATACGCCCGTGTGAAGAGA
1 GGCACATGGCCGTGTG-ACTGA
131960752 GGCACATGGCCGTGTGACTGA
1 GGCACATGGCCGTGTGACTGA
131960773 GGCACAT-GCCAGTGTG
1 GGCACATGGCC-GTGTG
131960789 GACTAGAAAC
Statistics
Matches: 44, Mismatches: 13, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
20 3 0.07
21 27 0.61
22 14 0.32
ACGTcount: A:0.21, C:0.24, G:0.36, T:0.19
Consensus pattern (21 bp):
GGCACATGGCCGTGTGACTGA
Found at i:131960788 original size:43 final size:43
Alignment explanation
Indices: 131960699--131960788 Score: 117
Period size: 43 Copynumber: 2.1 Consensus size: 43
131960689 CAAACGCTCA
* * * * *
131960699 TGTGAAGAGGGGCACATTGCCGTGTGGCTAAGGCATACGCCCG
1 TGTGAAGAGAGGCACATGGCCGTGTGACTAAGGCACACGCCAG
* *
131960742 TGTGAAGAGAGGCACATGGCCGTGTGACTGAGGCACATGCCAG
1 TGTGAAGAGAGGCACATGGCCGTGTGACTAAGGCACACGCCAG
131960785 TGTG
1 TGTG
131960789 GACTAGAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.22, C:0.21, G:0.38, T:0.19
Consensus pattern (43 bp):
TGTGAAGAGAGGCACATGGCCGTGTGACTAAGGCACACGCCAG
Found at i:131964183 original size:2 final size:2
Alignment explanation
Indices: 131964172--131964219 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
131964162 TTACGACATA
131964172 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
131964213 AT AT AT A
1 AT AT AT A
131964220 AGCCTAGGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:131967505 original size:25 final size:25
Alignment explanation
Indices: 131967471--131967523 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
131967461 AAAATAAAAA
131967471 ATAGGATAATTGTACTTTATTCTCT
1 ATAGGATAATTGTACTTTATTCTCT
131967496 ATAGGATAATTGTACTTTATTCTCT
1 ATAGGATAATTGTACTTTATTCTCT
131967521 ATA
1 ATA
131967524 CTTTTTTAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.47
Consensus pattern (25 bp):
ATAGGATAATTGTACTTTATTCTCT
Found at i:131968467 original size:40 final size:40
Alignment explanation
Indices: 131968409--131968487 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
131968399 ACATACCATG
* * *
131968409 TGGGGATAAAATCGACCCACCCAGTCCTACACACCAAGTA
1 TGGGGAAAAAATCAACCCACCCAGCCCTACACACCAAGTA
* *
131968449 TGGGGAAAAAATTAACCCATCCAGCCCTACACACCAAGT
1 TGGGGAAAAAATCAACCCACCCAGCCCTACACACCAAGT
131968488 GGTACTGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.37, C:0.32, G:0.16, T:0.15
Consensus pattern (40 bp):
TGGGGAAAAAATCAACCCACCCAGCCCTACACACCAAGTA
Found at i:131968860 original size:31 final size:31
Alignment explanation
Indices: 131968822--131968887 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
131968812 AATTTGGGCT
* *
131968822 CACACGCCTATGTGCCCTGCCCGTGTGGAAC
1 CACACGCCTACGTGCCCTGCCCATGTGGAAC
*
131968853 CACACGCCTGCGTGCCCTGCCCATGTGGAAC
1 CACACGCCTACGTGCCCTGCCCATGTGGAAC
131968884 CACA
1 CACA
131968888 TGTCTGTGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.18, C:0.41, G:0.24, T:0.17
Consensus pattern (31 bp):
CACACGCCTACGTGCCCTGCCCATGTGGAAC
Found at i:131970791 original size:32 final size:32
Alignment explanation
Indices: 131970755--131970819 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
131970745 ACCCATACAA
* * *
131970755 CCTACTTAACCTAG-TCCGTGTGGTCCATACGG
1 CCTACCTAACCTAGCT-CGTGTGGGCCACACGG
*
131970787 CCTACCTGACCTAGCTCGTGTGGGCCACACGG
1 CCTACCTAACCTAGCTCGTGTGGGCCACACGG
131970819 C
1 C
131970820 TTTGACTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 27 0.96
33 1 0.04
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (32 bp):
CCTACCTAACCTAGCTCGTGTGGGCCACACGG
Found at i:131971982 original size:26 final size:26
Alignment explanation
Indices: 131971949--131972056 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
131971939 TGATACAAAT
131971949 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
131971975 TGACAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131972001 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
131972027 TGATAATGGTTTAGATAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131972053 TGAT
1 TGAT
131972057 GGGAATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:131973574 original size:26 final size:26
Alignment explanation
Indices: 131973545--131973597 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
131973535 TTTACAGTTT
*
131973545 TACCTCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
131973571 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
131973597 T
1 T
131973598 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:131975212 original size:12 final size:12
Alignment explanation
Indices: 131975195--131975237 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
131975185 ACTCGGGGAA
131975195 GAGGCCGTGGTC
1 GAGGCCGTGGTC
* *
131975207 GAGGCCATGGTT
1 GAGGCCGTGGTC
131975219 GAGGCCGTGGTC
1 GAGGCCGTGGTC
*
131975231 GAAGCCG
1 GAGGCCG
131975238 AGGTAGTACT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.14, C:0.23, G:0.47, T:0.16
Consensus pattern (12 bp):
GAGGCCGTGGTC
Found at i:131980120 original size:26 final size:26
Alignment explanation
Indices: 131980091--131980198 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
131980081 TGATACAAAT
131980091 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
131980117 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131980143 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
131980169 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
131980195 TGAT
1 TGAT
131980199 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:131981707 original size:26 final size:26
Alignment explanation
Indices: 131981678--131981727 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
131981668 TACAGTTTTA
131981678 CCCTAGGAGATAAATT-ACCGAAATAC
1 CCCTAGG-GATAAATTGACCGAAATAC
* *
131981704 CCCTAGGGTTAAATTGACCTAAAT
1 CCCTAGGGATAAATTGACCGAAAT
131981728 GCATGTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (26 bp):
CCCTAGGGATAAATTGACCGAAATAC
Found at i:131983172 original size:23 final size:24
Alignment explanation
Indices: 131983123--131983178 Score: 71
Period size: 25 Copynumber: 2.4 Consensus size: 24
131983113 CTGTTTTCCA
*
131983123 TTTTTCTTTTTTCTCTCTCTGCCG
1 TTTTTCTTTTTCCTCTCTCTGCCG
*
131983147 TTTTCTCTTTTTCCTCTC-CT-CTG
1 TTTT-TCTTTTTCCTCTCTCTGCCG
131983170 TTTTTCTTT
1 TTTTTCTTT
131983179 CTTTCGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 5 0.17
23 6 0.21
24 6 0.21
25 12 0.41
ACGTcount: A:0.00, C:0.29, G:0.05, T:0.66
Consensus pattern (24 bp):
TTTTTCTTTTTCCTCTCTCTGCCG
Found at i:131983183 original size:24 final size:23
Alignment explanation
Indices: 131983123--131983183 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
131983113 CTGTTTTCCA
131983123 TTTTTCTTTTTT-CTCTCTCTGCC
1 TTTTTCTTTTTTCCTCTCTCTG-C
*
131983146 GTTTTCTCTTTTTCCTCTCCTCTG-
1 TTTTTCT-TTTTTCCTCT-CTCTGC
131983170 TTTTTCTTTCTTTC
1 TTTTTCTTT-TTTC
131983184 GATTAGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
23 8 0.25
24 15 0.47
25 4 0.12
26 5 0.16
ACGTcount: A:0.00, C:0.30, G:0.05, T:0.66
Consensus pattern (23 bp):
TTTTTCTTTTTTCCTCTCTCTGC
Found at i:131988453 original size:2 final size:2
Alignment explanation
Indices: 131988446--131988470 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
131988436 CTTAATTCTT
131988446 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
131988471 TTGTAACGCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:131988840 original size:26 final size:26
Alignment explanation
Indices: 131988804--131988939 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
131988794 TGATACAAAT
131988804 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
* *
131988830 TGATAATAGGTTAGATAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
131988856 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
131988882 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
131988908 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
131988934 TGATAA
1 TGATAA
131988940 GAATTTCATG
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.35, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:131992609 original size:2 final size:2
Alignment explanation
Indices: 131992598--131992631 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
131992588 TAGATTTTGA
131992598 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
131992632 GTGATTGTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:131999222 original size:26 final size:26
Alignment explanation
Indices: 131999179--131999313 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
131999169 CATGAAATTC
*
131999179 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
131999204 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
* *
131999230 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
131999256 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
131999282 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
131999308 TTATCA
1 TTATCA
131999314 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 8 0.08
26 93 0.92
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:132006510 original size:23 final size:23
Alignment explanation
Indices: 132006462--132006510 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
132006452 ATTAGGAACA
* *
132006462 ATAATAATACATATAAAACAACT
1 ATAAGAATACATATAAAACAAAT
*
132006485 ATAAGAATATATATAAAA-AATAT
1 ATAAGAATACATATAAAACAA-AT
132006508 ATA
1 ATA
132006511 TGTAGTATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (23 bp):
ATAAGAATACATATAAAACAAAT
Found at i:132007676 original size:23 final size:23
Alignment explanation
Indices: 132007650--132007706 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
132007640 GGCTGTTGTT
* *
132007650 GGGTTTTGGGTTTAGTAGTTTTG
1 GGGTTTTGGGCTTAGTAGTTTAG
*
132007673 GGGTTATT-GGCTTAGTGGTTTAG
1 GGGTT-TTGGGCTTAGTAGTTTAG
*
132007696 AGGTTTTGGGC
1 GGGTTTTGGGC
132007707 CTAAAATTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 2 0.07
23 24 0.86
24 2 0.07
ACGTcount: A:0.11, C:0.04, G:0.40, T:0.46
Consensus pattern (23 bp):
GGGTTTTGGGCTTAGTAGTTTAG
Found at i:132008216 original size:43 final size:42
Alignment explanation
Indices: 132008120--132008223 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
132008110 CGTTCTGTTT
* * * *
132008120 CCCTATCGCTTAGGGGTTTAGATCTGTGAATTCAACTTGTTA
1 CCCTATTGCTTAGGGGTTTAGATATGTAAATTCAACTTGCTA
* * ***
132008162 CCCTACTGCTTAGGGGTTTAAGGTATGTAAATTTGGCTTGCTA
1 CCCTATTGCTTAGGGGTTT-AGATATGTAAATTCAACTTGCTA
132008205 CCCTATTGCTTAGAGGGTT
1 CCCTATTGCTTAG-GGGTT
132008224 AAGCCCATCA
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 17 0.34
43 28 0.56
44 5 0.10
ACGTcount: A:0.20, C:0.18, G:0.24, T:0.38
Consensus pattern (42 bp):
CCCTATTGCTTAGGGGTTTAGATATGTAAATTCAACTTGCTA
Found at i:132021246 original size:23 final size:23
Alignment explanation
Indices: 132021198--132021246 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
132021188 ATTAGGAACA
* *
132021198 ATAATAATACATATAAAACAACT
1 ATAAGAATACATATAAAACAAAT
*
132021221 ATAAGAATATATATAAAA-AATAT
1 ATAAGAATACATATAAAACAA-AT
132021244 ATA
1 ATA
132021247 TATGTAGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (23 bp):
ATAAGAATACATATAAAACAAAT
Found at i:132027925 original size:27 final size:26
Alignment explanation
Indices: 132027888--132027999 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
132027878 AGCATGGCTG
* * *
132027888 CCAGAACAGATAATATGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
132027914 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
132027942 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
132027969 CCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
132027996 CCAG
1 CCAG
132028000 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 7
0.87 0.06 0.08
Matches are distributed among these distances:
26 7 0.09
27 54 0.70
28 16 0.21
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:132027947 original size:54 final size:54
Alignment explanation
Indices: 132027888--132027999 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
132027878 AGCATGGCTG
*
132027888 CCAGAACAGATA-ATATGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
132027942 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
132027996 CCAG
1 CCAG
132028000 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 36 0.68
55 17 0.32
ACGTcount: A:0.38, C:0.24, G:0.23, T:0.15
Consensus pattern (54 bp):
CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:132029651 original size:26 final size:26
Alignment explanation
Indices: 132029615--132029698 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
132029605 ACATGAATTC
132029615 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
132029641 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
132029667 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
132029693 TTATCA
1 TTATCA
132029699 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:132033701 original size:27 final size:26
Alignment explanation
Indices: 132033664--132033774 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 26
132033654 AGCATGGCTG
* *
132033664 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
132033690 CCAGATACAGATAATCGTGGCA-AGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
132033717 CCAG-ACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
132033743 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
132033770 CCAGA
1 CCAGA
132033775 CGCTTCCTCC
Statistics
Matches: 75, Mismatches: 4, Indels: 11
0.83 0.04 0.12
Matches are distributed among these distances:
25 13 0.17
26 17 0.23
27 40 0.53
28 5 0.07
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:132033762 original size:52 final size:53
Alignment explanation
Indices: 132033664--132033775 Score: 165
Period size: 53 Copynumber: 2.1 Consensus size: 53
132033654 AGCATGGCTG
*
132033664 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCA-AGCCA
1 CCAG-ACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCATAGCCA
* *
132033717 CCAGACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCATAGCCA
132033770 CCAGAC
1 CCAGAC
132033776 GCTTCCTCCA
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
52 21 0.39
53 33 0.61
ACGTcount: A:0.37, C:0.24, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCATAGCCA
Found at i:132035425 original size:26 final size:26
Alignment explanation
Indices: 132035389--132035522 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
132035379 ACATGAATTC
132035389 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
132035415 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
132035441 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
132035467 TTATCATG-AACATTTACCTAA-CCA
1 TTATCATGAAACATTTACCTAACCCA
* *
132035491 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
132035517 TTATCA
1 TTATCA
132035523 ATTTGTATCA
Statistics
Matches: 102, Mismatches: 4, Indels: 4
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.10
25 26 0.25
26 66 0.65
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:132035513 original size:50 final size:52
Alignment explanation
Indices: 132035389--132035522 Score: 236
Period size: 50 Copynumber: 2.6 Consensus size: 52
132035379 ACATGAATTC
* *
132035389 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
132035441 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAA-CCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
132035491 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
132035523 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
50 35 0.44
51 13 0.16
52 32 0.40
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.34
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:132037066 original size:179 final size:178
Alignment explanation
Indices: 132036771--132037488 Score: 949
Period size: 179 Copynumber: 4.0 Consensus size: 178
132036761 TATGGGAAAT
* * * * ** * *
132036771 AAATCTTCAGTTTTCAGTCTGCTTCCTTACTA-CTCCGGAAGATAAGACTCCATCCTCAACCTAC
1 AAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTTCTTCAACCTGC
* * * * * * *
132036835 TCTCTTGCTACCTCAGAGAGATAAGGCTAGAAATAAAATTTGCTCAATTGCCGATACATGGAGAT
66 CCTCTTGCTACCTCAGAGAGATGAGGCTGGTAGTAAAATCTGCTCCATTGCCGATACATGGAGAT
*** * * * *
132036900 AGGTTTCACTACCTATGAAGATCTGCTCCGCTGCAATCTAAGGGAGATA
131 AAAATTCAC-ACATATGAAGATCTACTCCACTGCAATCTCAGGGAGATA
* *
132036949 AAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAAATAATACTCGTTCTTCAACCTGC
1 AAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTTCTTCAACCTGC
* * *
132037014 CCTTTTGCTACCTCAGAGAAATGAGGCTGGTAGTAAAATCTTCTCCATTGCCGATACATGGAGAT
66 CCTCTTGCTACCTCAGAGAGATGAGGCTGGTAGTAAAATCTGCTCCATTGCCGATACATGGAGAT
* *
132037079 AAAATTCAC-CATATACAAAGATCTACTCCACTGCAATCTCAGAGAGATA
131 AAAATTCACACATAT--GAAGATCTACTCCACTGCAATCTCAGGGAGATA
* * *
132037128 AAATCTTCAATTCTCAGTCTGCTTCCTTGTTACCTCAGGAAGATAAGACTTGCTCTTCAACCTGC
1 AAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTTCTTCAACCTGC
* *
132037193 CCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTAAAATCTGCTCCATTGCTGATACATGGAGAT
66 CCTCTTGCTACCTCAGAGAGATGAGGCTGGTAGTAAAATCTGCTCCATTGCCGATACATGGAGAT
132037258 AAAATTCAC-CATATGCGAAGATCTACTCCACTGCAATCTCAGGGAGATA
131 AAAATTCACACATAT--GAAGATCTACTCCACTGCAATCTCAGGGAGATA
**
132037307 AAATCTTCAATTCTCAGTCTGCTTTATTGCTACCTCAGGAAGATAAGACTCGTTCTTCAACCTGC
1 AAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTTCTTCAACCTGC
* *
132037372 CCTCTTGCTACCTCAGAGAGATGAGGCTGGTGGTAAAATCTGCTCCATTGCTGATACATGGAGAT
66 CCTCTTGCTACCTCAGAGAGATGAGGCTGGTAGTAAAATCTGCTCCATTGCCGATACATGGAGAT
* * * * * *
132037437 AAGATTCAC-CATCTGCGAATATCTACTCCCCTGTATTCTCAGGGAGATA
131 AAAATTCACACATAT--GAAGATCTACTCCACTGCAATCTCAGGGAGATA
132037486 AAA
1 AAA
132037489 ACTGTCCTTT
Statistics
Matches: 484, Mismatches: 53, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
177 4 0.01
178 29 0.06
179 451 0.93
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (178 bp):
AAATCTTCAATTCTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCGTTCTTCAACCTGC
CCTCTTGCTACCTCAGAGAGATGAGGCTGGTAGTAAAATCTGCTCCATTGCCGATACATGGAGAT
AAAATTCACACATATGAAGATCTACTCCACTGCAATCTCAGGGAGATA
Found at i:132043587 original size:25 final size:25
Alignment explanation
Indices: 132043553--132043666 Score: 128
Period size: 25 Copynumber: 4.7 Consensus size: 25
132043543 GACCTCAGCA
132043553 TGCTCTCTGATTATTAGCACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAG
* *
132043578 TGCTCTCTGAATATTAGCACGCTAG
1 TGCTCTCTGATTATTAGCACGCCAG
* * *
132043603 TTCTCTCTAATTATTAGCACGTCAG
1 TGCTCTCTGATTATTAGCACGCCAG
**
132043628 TGCTCTCTG--TA-TAGCACTTCAG
1 TGCTCTCTGATTATTAGCACGCCAG
132043650 TGCTCTCTG-TTCATTAG
1 TGCTCTCTGATT-ATTAG
132043667 TGCATAATAA
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
22 19 0.25
23 3 0.04
24 1 0.01
25 53 0.70
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (25 bp):
TGCTCTCTGATTATTAGCACGCCAG
Found at i:132048237 original size:135 final size:137
Alignment explanation
Indices: 132047994--132048278 Score: 520
Period size: 135 Copynumber: 2.1 Consensus size: 137
132047984 TATTGGGCCT
** *
132047994 AAGCCCATTCAGGTAACAGTGGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
132048059 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAAT-AA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
132048123 CATATGC
131 CATATGC
132048130 AAGCCCATTTGGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
132048194 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
132048259 CATATGC
131 CATATGC
132048266 AAGCCCATTTGGG
1 AAGCCCATTTGGG
132048279 GAGACTACTC
Statistics
Matches: 144, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
135 93 0.65
136 51 0.35
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAA
CATATGC
Found at i:132050078 original size:26 final size:25
Alignment explanation
Indices: 132050042--132050197 Score: 212
Period size: 26 Copynumber: 6.2 Consensus size: 25
132050032 CATGAAATTC
132050042 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
132050068 TTATCATGAAACATTTACCTAACCCA
1 TTATCATG-AACATTTACCTAACCCA
*
132050094 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
*
132050120 TTATCATGGAACATTTACCTAACCTA
1 TTATCAT-GAACATTTACCTAACCCA
*
132050146 TTATCATGAACA-TTA-TTAA-CC-
1 TTATCATGAACATTTACCTAACCCA
*
132050167 TTATCATGAACATTTACCTAACCTA
1 TTATCATGAACATTTACCTAACCCA
132050192 TTATCA
1 TTATCA
132050198 ATTTGTATCA
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.10
22 4 0.03
23 6 0.05
24 4 0.03
25 11 0.09
26 82 0.68
27 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (25 bp):
TTATCATGAACATTTACCTAACCCA
Found at i:132054040 original size:64 final size:64
Alignment explanation
Indices: 132053967--132054173 Score: 170
Period size: 64 Copynumber: 3.2 Consensus size: 64
132053957 CTGGGCCAGA
*
132053967 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * ***** * ** *
132054031 GCCCATTTCAAAATACATGTAACATCAATAACATATGCAAGCCC--ATTTGGGTAACAGATACTG
1 GCCCATTTCAGATTACA-ATAA-A-CTGGGCCTTA-GC---CCCTTATTCAGATAACAG-TA-TG
*
132054094 GGCCA-A-
57 GCCCATAG
*
132054100 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
132054164 GCCCATTTCA
1 GCCCATTTCA
132054174 AAATACATGC
Statistics
Matches: 101, Mismatches: 29, Indels: 26
0.65 0.19 0.17
Matches are distributed among these distances:
62 9 0.09
63 3 0.03
64 33 0.33
65 5 0.05
66 5 0.05
67 5 0.05
68 5 0.05
69 24 0.24
70 3 0.03
71 9 0.09
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:132054115 original size:133 final size:135
Alignment explanation
Indices: 132053955--132054215 Score: 490
Period size: 133 Copynumber: 1.9 Consensus size: 135
132053945 GTAACAGTGG
132053955 TACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
*
132054020 ATGGCCCATAGGCCCATTTCAAAATACATGTAACATCAAT-AACATATGCAAGCCCATTTGGGTA
66 ATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCATTTGGGTA
132054084 ACAGA
131 ACAGA
132054089 TACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
1 TACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
*
132054153 ATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGG
66 ATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCATTTGGG
132054216 GAGACTACTC
Statistics
Matches: 124, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
133 92 0.74
134 32 0.26
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (135 bp):
TACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGT
ATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAACATATGCAAGCCCATTTGGGTA
ACAGA
Found at i:132056023 original size:26 final size:26
Alignment explanation
Indices: 132055987--132056117 Score: 182
Period size: 26 Copynumber: 5.2 Consensus size: 26
132055977 CATGAAATTC
*
132055987 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
132056013 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
132056039 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
132056065 TTATC-TG-AACATTTATCT-A--TA
1 TTATCATGAAACATTTACCTAACCTA
*
132056086 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
132056112 TTATCA
1 TTATCA
132056118 ATTTGTATCA
Statistics
Matches: 96, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
21 7 0.07
22 2 0.02
23 11 0.11
24 11 0.11
25 2 0.02
26 63 0.66
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:132056094 original size:47 final size:51
Alignment explanation
Indices: 132055987--132056117 Score: 189
Period size: 47 Copynumber: 2.6 Consensus size: 51
132055977 CATGAAATTC
* *
132055987 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAA-CCA
* *
132056039 TTATCATGGAACATTTACCTAACCTATTATC-TG-AACATTTATCT-A-TA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
132056086 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
132056118 ATTTGTATCA
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
47 32 0.43
49 1 0.01
50 10 0.14
51 2 0.03
52 29 0.39
ACGTcount: A:0.36, C:0.23, G:0.05, T:0.36
Consensus pattern (51 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCA
Found at i:132059488 original size:133 final size:128
Alignment explanation
Indices: 132059149--132059775 Score: 459
Period size: 132 Copynumber: 4.8 Consensus size: 128
132059139 TTAAGAATTC
* * * * * * * *
132059149 TTTAAAACGAAGACGAGATTCGATATTTGGA-AATTTGCAAAATAGTGCCCTAACGTGTTGGGTT
1 TTTAAAACGAAGGCAATATTCGATATTT-GACAATTCG-AGAATCGTGCCCTATCGTGCTGGGTT
* * * * * * *
132059213 GCAATTTCGCATTTGCTCAAAATAATCGAATATTACTTCAAAATTTCACTCATGTCTTCTAAAAA
64 GCGATTTCTCATTTGCTCAAAACAATCGAATATTCCTT-TAGATTTCACTCATGT-TT-AAAAAA
*
132059278 TCT
126 TAT
* ** * * * * * *
132059281 TTTAAAACAAAGGTGATACTCGGTGTTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGT
1 TTTAAAACGAAGGCAATATTCGATATTTGACAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGC
* * * *
132059346 GATTCCTCGTTTGCTCGAAACAATCGAATATTCCTTTAGGTTTCACTCATGTTTAAAAAAAATAT
66 GATTTCTCATTTGCTCAAAACAATCGAATATTCCTTTAGATTTCACTCATGTTT--AAAAAATAT
* * * * * *
132059411 ATTTAAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTGATGGGT
1 -TTT-AAAACGAAGGCAATATTCGATATTTGACAATTC-GAGAATCGTGCCCTATCGTGCTGGGT
* * * * * * * * * *
132059476 TGCAATTTCTCGTTTGCGCAAGATAGTCGAATATCCCTTTGGAATTTCATTCGTGTTTTCTAAAA
63 TGCGATTTCTCATTTGCTCAAAACAATCGAATATTCCTTTAG-ATTTCACTCATG--TT-TAAAA
*
132059541 ACT-T
124 AATAT
** * * *
132059545 TTTAAAACGAAAGGCAATATTCGGCATTTGACAATTCGAGAATCATGCTCTATCGTGCTGGGTTA
1 TTTAAAACG-AAGGCAATATTCGATATTTGACAATTCGAGAATCGTGCCCTATCGTGCTGGGTTG
* * * * * *
132059610 TGATTTCTTATTTGCTCAAAACGATCGAACATTCCTTTATATTCTCACTCATGTTTAAAAAAAAT
65 CGATTTCTCATTTGCTCAAAACAATCGAATATTCCTTTAGATT-TCACTCATGTTTAAAAAATAT
* * * * * * * * *
132059675 CTAAAAATGAAGGCGATGTTCGATATTTGGCGATTTGAGAATCGAGCCCTATCGTGCTGGGTTGC
1 TTTAAAACGAAGGCAATATTCGATATTTGACAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGC
* *
132059740 GCTTTTTCATTTG-TCCAAAACAATCGAATATCTCCT
66 GATTTCTCATTTGCT-CAAAACAATCGAATAT-TCCT
132059776 CAGAATTTCA
Statistics
Matches: 381, Mismatches: 100, Indels: 30
0.75 0.20 0.06
Matches are distributed among these distances:
128 1 0.00
129 76 0.20
130 33 0.09
131 59 0.15
132 114 0.30
133 79 0.21
134 10 0.03
135 6 0.02
136 2 0.01
137 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (128 bp):
TTTAAAACGAAGGCAATATTCGATATTTGACAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGC
GATTTCTCATTTGCTCAAAACAATCGAATATTCCTTTAGATTTCACTCATGTTTAAAAAATAT
Found at i:132061198 original size:33 final size:33
Alignment explanation
Indices: 132061161--132061229 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
132061151 CTTCAGCCGC
132061161 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
* * * *
132061194 CGCATGCCTCTCAGCCTTGGTCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
132061227 CGC
1 CGC
132061230 GTCTGACACT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.16, C:0.51, G:0.17, T:0.16
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGGCCACCACGCCCCA
Found at i:132062436 original size:20 final size:21
Alignment explanation
Indices: 132062411--132062450 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
132062401 TTGTTATATT
*
132062411 ACTATTATTGTTA-TATTATC
1 ACTATTATTCTTACTATTATC
*
132062431 ACTATTTTTCTTACTATTAT
1 ACTATTATTCTTACTATTAT
132062451 TATTACTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (21 bp):
ACTATTATTCTTACTATTATC
Found at i:132062470 original size:3 final size:3
Alignment explanation
Indices: 132062332--132062455 Score: 101
Period size: 3 Copynumber: 41.3 Consensus size: 3
132062322 TCTTATTTAC
* *
132062332 ATT ATT ATT AGT ATT ATT ATT ATT ATT ATT ATT ATT ATCT CCATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T --ATT ATT
* * * *
132062380 ATT ATT ATT ATT ATT ATT CTT -TT GTT A-T ATT ACT ATT ATT GTT A-T
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * *
132062425 ATT ATC ACT ATT TTT CTT ACT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
132062456 CTACAACTAT
Statistics
Matches: 96, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
2 6 0.06
3 86 0.90
4 1 0.01
5 1 0.01
6 2 0.02
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:132062762 original size:15 final size:15
Alignment explanation
Indices: 132062742--132062772 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
132062732 TATTATTTTC
132062742 TATTTATTACTATTA
1 TATTTATTACTATTA
132062757 TATTTATTACTATTA
1 TATTTATTACTATTA
132062772 T
1 T
132062773 TAATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTACTATTA
Found at i:132062880 original size:15 final size:15
Alignment explanation
Indices: 132062862--132062899 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
132062852 CCCACCTAGC
132062862 TATTATTACTATTAT
1 TATTATTACTATTAT
*
132062877 TATTTTTACTATTAT
1 TATTATTACTATTAT
*
132062892 AATTATTA
1 TATTATTA
132062900 TTAATCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTATTACTATTAT
Found at i:132067395 original size:13 final size:13
Alignment explanation
Indices: 132067377--132067404 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
132067367 ATGAGATTTG
132067377 ACGACCCAGCCAC
1 ACGACCCAGCCAC
132067390 ACGACCCAGCCAC
1 ACGACCCAGCCAC
132067403 AC
1 AC
132067405 CCAATGTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.54, G:0.14, T:0.00
Consensus pattern (13 bp):
ACGACCCAGCCAC
Found at i:132077713 original size:44 final size:44
Alignment explanation
Indices: 132077649--132078255 Score: 921
Period size: 44 Copynumber: 13.8 Consensus size: 44
132077639 GGCAAATCCT
* *
132077649 GCAGATTTGGGCATCTCTGTATTAGTAGAGAGCAGATCGAAGATA
1 GCAGATTT-GGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
132077694 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAA-ATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
132077737 GCAAATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
132077781 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAA-ATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
132077824 GCAAATTTGGCATCTCTGTATTGGCGGAGAGCAGATCAAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * **
132077868 GCAGATTTGGCATCTCTGTATTGACGGAGAATAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
**
132077912 GCAGATTTGGCATCTCTGTATTGGTGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
132077956 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
132078000 GCAGATTTGGCATTTTTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
*
132078044 GCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
132078088 GCAGATTTGACATCTCTGTATTGGTAGAGAGCAGATCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * **
132078132 GCAGATTTGGCATATCTATATTGGCAGAGAGCAGGCCGAAGATA
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* *
132078176 GCAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGAAGATG
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
* * *
132078220 GAAGATTTGGCGTCTCTATATTGGCAGAGAGCAGAT
1 GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGAT
132078256 AAAAAATAAC
Statistics
Matches: 520, Mismatches: 40, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
43 82 0.16
44 430 0.83
45 8 0.02
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (44 bp):
GCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATA
Found at i:132080068 original size:2 final size:2
Alignment explanation
Indices: 132080056--132080089 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
132080046 TTTAAATTAT
132080056 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
132080090 GTGTGAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:132081619 original size:134 final size:130
Alignment explanation
Indices: 132081442--132081907 Score: 419
Period size: 130 Copynumber: 3.5 Consensus size: 130
132081432 GGTGTTTGAT
* * *
132081442 AATTCGAGAATCATGCCCAATCGTGCTGGGTTGTGATTCCTCGTTTGCTCAAAACAATCGAATAT
1 AATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATAT
*
132081507 TCCTTTAGGTTTTCACTCATGTTTAAAAAATATATATTTAAAAACGAAGGAAATGTTCGATGTTA
66 TCCTTTAGGTTTTCACTCATGTTTAAAAAA-ATATATTTAAAAACGAAGGCAATGTTCGAT-TT-
132081572 GGC
128 GGC
* * * * * * *
132081575 AATTCGGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTCGTTTGCGCAAGATAGTCGAATA
1 AATTC-GAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATA
* * * * * *
132081640 TCCCTTT-GGAATTTCATTACTAT-TTTCTAAAAACT-T-TTT-AAAACGAAAGGCAATATTCGG
65 TTCCTTTAGG-TTTTCACT-C-ATGTTT-AAAAAAATATATTTAAAAACG-AAGGCAATGTTC-G
*
132081700 CATTTGAC
124 -ATTTGGC
* * * *
132081708 AATTCGAGAATCACGCTCTATCGTGCTGGGTTAG-GATTTCTCGTTTGCTCAAAACGATCGAACA
1 AATTCGAGAATCATGCCCTATCGTGCTGGGTT-GCGATTTCTCGTTTGCTCAAAACAATCGAATA
** * * * *
132081772 TTCCTTTATATTCTCACTCATGTTTAAAAAAA-A-ATCTAAAAATGAAGGCGATGTTCGATATTT
65 TTCCTTTAGGTTTTCACTCATGTTTAAAAAAATATATTTAAAAACGAAGGCAATGTTCG--ATTT
132081835 GGC
128 GGC
* * * * * *
132081838 AATTTGAGAATCAAGCCCTATCGTTCTGGGTTGCGCTTTTTCATTTG-TCCAAAACAATCGAATA
1 AATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCT-CAAAACAATCGAATA
132081902 TCTCCT
65 T-TCCT
132081908 CAGAATTTCA
Statistics
Matches: 263, Mismatches: 52, Indels: 38
0.75 0.15 0.11
Matches are distributed among these distances:
129 3 0.01
130 77 0.29
131 13 0.05
132 63 0.24
133 28 0.11
134 65 0.25
135 7 0.03
136 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (130 bp):
AATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCGTTTGCTCAAAACAATCGAATAT
TCCTTTAGGTTTTCACTCATGTTTAAAAAAATATATTTAAAAACGAAGGCAATGTTCGATTTGGC
Found at i:132081769 original size:132 final size:130
Alignment explanation
Indices: 132081337--132081907 Score: 383
Period size: 130 Copynumber: 4.3 Consensus size: 130
132081327 CCTAACGTAT
* * * * ** * * ** *
132081337 TGGGTTGCAATTTCGCATTTTCTCAAAATAATCGAATATTACTTCAAAATTCCACTCATGTCTTC
1 TGGGTTGCGATTTCTCGTTTGCTCAAAACGATCGAATATTCCTTTAGGATTTCACTCATGT-TTC
* ** * * * *
132081402 TAAAAATCTTTTAAAAC-AAAGGTGATACTCGGTGTTTGATAATTCGAGAATCATGCCCAATCGT
65 TAAAAATATTTTAAAACGAAAGGAAATATTCGG-ATTTGACAATTCGAGAATCATGCCCTATCGT
132081466 GC
129 GC
* * * * **
132081468 TGGGTTGTGATTCCTCGTTTGCTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCATGTTTAA
1 TGGGTTGCGATTTCTCGTTTGCTCAAAACGATCGAATATTCCTTTAGGATTTCACTCATGTTTCT
* * * *
132081533 AAAATATATATTTAAAAACG-AAGGAAATGTTC-GATGTTAGGCAATTCGGGGAATCGTGCCCTA
66 AAAA-ATAT-TTT-AAAACGAAAGGAAATATTCGGAT-TT-GACAATTC-GAGAATCATGCCCTA
132081596 TCGTGC
125 TCGTGC
* * * *
132081602 TGGGTTGCAATTTCTCGTTTGCGCAAGATA-G-TCGAATATCCCTTT-GGAATTTCATTACTAT-
1 TGGGTTGCGATTTCTCGTTTGCTCAA-A-ACGATCGAATATTCCTTTAGG-ATTTCACT-C-ATG
* * *
132081663 TTTCTAAAAACT-TTTTAAAACGAAAGGCAATATTCGGCATTTGACAATTCGAGAATCACGCTCT
61 TTTCTAAAAA-TATTTTAAAACGAAAGGAAATATTCGG-ATTTGACAATTCGAGAATCATGCCCT
132081727 ATCGTGC
124 ATCGTGC
* *
132081734 TGGGTTAG-GATTTCTCGTTTGCTCAAAACGATCGAACATTCCTTTA-TATTCTCACTCATGTTT
1 TGGGTT-GCGATTTCTCGTTTGCTCAAAACGATCGAATATTCCTTTAGGATT-TCACTCATGTTT
** * * * * ** * * * * *
132081797 AAAAAAAAATCTAAAAATG-AAGGCGATGTTCGATATTTGGCAATTTGAGAATCAAGCCCTATCG
64 CTAAAAATATTTTAAAACGAAAGGAAATATTCG-GATTTGACAATTCGAGAATCATGCCCTATCG
*
132081861 TTC
128 TGC
* * * *
132081864 TGGGTTGCGCTTTTTCATTTG-TCCAAAACAATCGAATATCTCCT
1 TGGGTTGCGATTTCTCGTTTGCT-CAAAACGATCGAATAT-TCCT
132081908 CAGAATTTCA
Statistics
Matches: 345, Mismatches: 68, Indels: 54
0.74 0.15 0.12
Matches are distributed among these distances:
129 2 0.01
130 78 0.23
131 77 0.22
132 67 0.19
133 42 0.12
134 64 0.19
135 12 0.03
136 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (130 bp):
TGGGTTGCGATTTCTCGTTTGCTCAAAACGATCGAATATTCCTTTAGGATTTCACTCATGTTTCT
AAAAATATTTTAAAACGAAAGGAAATATTCGGATTTGACAATTCGAGAATCATGCCCTATCGTGC
Found at i:132083438 original size:31 final size:31
Alignment explanation
Indices: 132083403--132083464 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
132083393 AATATCAAAT
*
132083403 TTTGAAAAGTATAGAGACTAAAATTAATTAA
1 TTTGAAAAGTATAGAAACTAAAATTAATTAA
** * *
132083434 TTTGAAATTTATAGAAACTAAATTTGATTAA
1 TTTGAAAAGTATAGAAACTAAAATTAATTAA
132083465 ATTAAAATAC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.11, T:0.37
Consensus pattern (31 bp):
TTTGAAAAGTATAGAAACTAAAATTAATTAA
Found at i:132084521 original size:47 final size:48
Alignment explanation
Indices: 132084425--132084521 Score: 162
Period size: 48 Copynumber: 2.0 Consensus size: 48
132084415 TTTATTTCGT
132084425 TATTGGCATCTTGACCAGAAGCGAAACCCTGTTAGGGCTTAAAAACCC
1 TATTGGCATCTTGACCAGAAGCGAAACCCTGTTAGGGCTTAAAAACCC
*
132084473 TATTGGCATCTTGACCAGAAGC-AGAA-CCTGTTAGGGCTTAAAAGCCC
1 TATTGGCATCTTGACCAGAAGCGA-AACCCTGTTAGGGCTTAAAAACCC
132084520 TA
1 TA
132084522 AAACTTTTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 23 0.49
48 24 0.51
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (48 bp):
TATTGGCATCTTGACCAGAAGCGAAACCCTGTTAGGGCTTAAAAACCC
Found at i:132084755 original size:30 final size:29
Alignment explanation
Indices: 132084668--132084763 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
132084658 GTTTAAAATT
*
132084668 TTTAACAATTTTAATTAAACCTTCCAAAAG
1 TTTAAAAATTTTAATTAAACCTT-CAAAAG
* * * *
132084698 TTTTGAAAATTTTCACTAAAACTTCAAAAG
1 -TTTAAAAATTTTAATTAAACCTTCAAAAG
*
132084728 TTATAAAAATTTTAATTAAACCCTCAAAA-
1 TT-TAAAAATTTTAATTAAACCTTCAAAAG
132084757 TTTAAAA
1 TTTAAAA
132084764 CGAAGACCCG
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
28 5 0.09
29 4 0.07
30 27 0.50
31 18 0.33
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (29 bp):
TTTAAAAATTTTAATTAAACCTTCAAAAG
Found at i:132087529 original size:40 final size:40
Alignment explanation
Indices: 132087402--132087531 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
132087392 ATGCTGTAAA
* *
132087402 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
132087442 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
* *
132087482 TTCTATCCGGGCTAAGACCTGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
132087522 TTATATCCGG
1 TTATATCCGG
132087532 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.05
40 71 0.95
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:132092351 original size:11 final size:11
Alignment explanation
Indices: 132092335--132092361 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
132092325 CAAGGACTCG
132092335 AAATTTACTAT
1 AAATTTACTAT
132092346 AAATTTACTAT
1 AAATTTACTAT
132092357 AAATT
1 AAATT
132092362 ATCCAGAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (11 bp):
AAATTTACTAT
Found at i:132093423 original size:36 final size:36
Alignment explanation
Indices: 132093376--132093450 Score: 98
Period size: 36 Copynumber: 2.1 Consensus size: 36
132093366 TACGACCATT
*
132093376 TACGGCACTATTCACGTATACGAA-ACTATTCATGTA
1 TACGGCACTATTCACGTATAC-AATACTATTCACGTA
* * *
132093412 TACGGTACTATTTACGTATACAATACTGTTCACGTA
1 TACGGCACTATTCACGTATACAATACTATTCACGTA
132093448 TAC
1 TAC
132093451 AGTAGTTGGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
35 2 0.06
36 32 0.94
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.33
Consensus pattern (36 bp):
TACGGCACTATTCACGTATACAATACTATTCACGTA
Found at i:132093451 original size:18 final size:18
Alignment explanation
Indices: 132093382--132093451 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
132093372 CATTTACGGC
132093382 ACTATTCACGTATACGAA-
1 ACTATTCACGTATAC-AAT
* **
132093400 ACTATTCATGTATACGGT
1 ACTATTCACGTATACAAT
*
132093418 ACTATTTACGTATACAAT
1 ACTATTCACGTATACAAT
*
132093436 ACTGTTCACGTATACA
1 ACTATTCACGTATACA
132093452 GTAGTTGGGA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (18 bp):
ACTATTCACGTATACAAT
Found at i:132098238 original size:20 final size:20
Alignment explanation
Indices: 132098208--132098252 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
132098198 CTGTTTTATT
132098208 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTGTATTAAA
* *
132098227 ATGGGCCCAACTGTGTTAAT
1 ATGGGCCCAACTGTATTAAA
132098247 ATGGGC
1 ATGGGC
132098253 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTAAA
Found at i:132098404 original size:61 final size:61
Alignment explanation
Indices: 132098276--132098416 Score: 164
Period size: 61 Copynumber: 2.3 Consensus size: 61
132098266 TCTCGACTTG
* * * * *
132098276 TAATAGGGCTACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTCTGATATTG
1 TAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATATTC
132098337 TAATAGGGCTATGGCCCAGA-TCAATACTGATATGGGCTAAGGCCCAGT-TAACACTGAT-TTC
1 TAATAGGGCTATGGCCCAGACT-AATACTGATATGGGCT-AGGCCCAGTAT-ACACTGATATTC
*
132098398 TGATAGGGCT-TAGGCCCAG
1 TAATAGGGCTAT-GGCCCAG
132098417 TAAAGCTTGA
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
60 2 0.03
61 53 0.76
62 15 0.21
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (61 bp):
TAATAGGGCTATGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGATATTC
Found at i:132102876 original size:20 final size:20
Alignment explanation
Indices: 132102846--132102890 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
132102836 CTGTTTTATT
*
132102846 ATGGG-CCAACTGTATTAAA
1 ATGGGCCCAACTATATTAAA
* *
132102865 ATGGGCCCAACTATGTTAAT
1 ATGGGCCCAACTATATTAAA
132102885 ATGGGC
1 ATGGGC
132102891 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTATATTAAA
Found at i:132102958 original size:27 final size:27
Alignment explanation
Indices: 132102919--132103020 Score: 73
Period size: 27 Copynumber: 3.5 Consensus size: 27
132102909 ACTTGTAATA
132102919 GGGCTACGGCCCAGACTGATACTGATAT
1 GGGCTACGGCCCAGACTGATA-TGATAT
132102947 GGGCTA-GGCCCAGTATGCTCTGATATTG-TAAT
1 GGGCTACGGCCCAG-A----CTGATA-TGAT-AT
* * *
132102979 AGGGCTATGGCCCAGATTAATATGATAT
1 -GGGCTACGGCCCAGACTGATATGATAT
*
132103007 GGGCTAAGGCCCAG
1 GGGCTACGGCCCAG
132103021 TTAACACTGA
Statistics
Matches: 61, Mismatches: 4, Indels: 19
0.73 0.05 0.23
Matches are distributed among these distances:
27 20 0.33
28 11 0.18
29 5 0.08
31 1 0.02
32 10 0.16
33 7 0.11
34 7 0.11
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (27 bp):
GGGCTACGGCCCAGACTGATATGATAT
Found at i:132103031 original size:27 final size:27
Alignment explanation
Indices: 132102980--132103031 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
132102970 TATTGTAATA
* *
132102980 GGGCTATGGCCCAGATTAATATGATAT
1 GGGCTAAGGCCCAGATTAACATGATAT
132103007 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTAAGGCCCAGATTAACA-TGAT
132103032 TTCTGAATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (27 bp):
GGGCTAAGGCCCAGATTAACATGATAT
Found at i:132103031 original size:61 final size:60
Alignment explanation
Indices: 132102883--132103054 Score: 172
Period size: 61 Copynumber: 2.8 Consensus size: 60
132102873 AACTATGTTA
* * * * * *
132102883 ATATGGGCAAGGCCCAATATA-TCTCGACTTGTAATAGGGCTACGGCCCAGACTGATACTG
1 ATATGGGCTAGGCCCAGTATACACT-GATTTGTAATAGGGCTATGGCCCAGACTAATACTG
* * *
132102943 ATATGGGCTAGGCCCAGTATGCTCTGATATTGTAATAGGGCTATGGCCCAGATTAATA-TG
1 ATATGGGCTAGGCCCAGTATACACTGAT-TTGTAATAGGGCTATGGCCCAGACTAATACTG
*
132103003 ATATGGGCTAAGGCCCAGT-TAACACTGATTTCTGAATAGGGCT-TGGGCCCAG
1 ATATGGGCT-AGGCCCAGTAT-ACACTGATTTGT-AATAGGGCTAT-GGCCCAG
132103055 TAAAGCTTGA
Statistics
Matches: 96, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
60 36 0.38
61 60 0.62
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAGTATACACTGATTTGTAATAGGGCTATGGCCCAGACTAATACTG
Found at i:132103846 original size:16 final size:17
Alignment explanation
Indices: 132103814--132103846 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
132103804 CATCAAGAAG
132103814 GGTTTTCAATGAAAACAT
1 GGTTTTCAA-GAAAACAT
132103832 GGTTTTCAA-AAAACA
1 GGTTTTCAAGAAAACA
132103847 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
GGTTTTCAAGAAAACAT
Found at i:132110207 original size:19 final size:18
Alignment explanation
Indices: 132110172--132110212 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
132110162 TTGTTAATTC
132110172 ACTTTTGTCCATTTTTTT
1 ACTTTTGTCCATTTTTTT
*
132110190 ACTTTT-TCTCATTATTTT
1 ACTTTTGTC-CATTTTTTT
132110208 A-TTTT
1 ACTTTT
132110213 AGTCTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.68
Consensus pattern (18 bp):
ACTTTTGTCCATTTTTTT
Found at i:132110286 original size:25 final size:24
Alignment explanation
Indices: 132110258--132110315 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
132110248 CTGCTATCAT
*
132110258 TATTATATT-TTATTTATTAGCATGG
1 TATTATATTATTA-TTATTA-CATAG
*
132110283 TATTATTATTATTATTATTACTTAG
1 TATTA-TATTATTATTATTACATAG
132110308 TATTATAT
1 TATTATAT
132110316 ACATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 13 0.45
26 10 0.34
27 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (24 bp):
TATTATATTATTATTATTACATAG
Found at i:132110369 original size:18 final size:19
Alignment explanation
Indices: 132110333--132110370 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
132110323 TATCATATAG
*
132110333 TATTATTAATTTGTTTTAA
1 TATTATTAATTTGTGTTAA
*
132110352 TATTATTATTTTG-GTTAA
1 TATTATTAATTTGTGTTAA
132110370 T
1 T
132110371 GTATTTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
TATTATTAATTTGTGTTAA
Found at i:132118550 original size:288 final size:288
Alignment explanation
Indices: 132118034--132118608 Score: 1132
Period size: 288 Copynumber: 2.0 Consensus size: 288
132118024 CAAAAGAAAG
*
132118034 AGGAGCAAGAGAAGAAACGAGAAAGGAGAAGAGCGCGTTTGAACGGGGAAGAGATTAAATGGAAA
1 AGGAGCAAGAGAAGAAACGAGAAAGGAGAAGAGCGCGTTTGAACGGCGAAGAGATTAAATGGAAA
132118099 CCAATGACCTTTCCCCATATATCCAGAACATTTGTGTCAGGAGGAACTATTTATGCCGAAGGAAG
66 CCAATGACCTTTCCCCATATATCCAGAACATTTGTGTCAGGAGGAACTATTTATGCCGAAGGAAG
*
132118164 ATTGGCAGGCCAAGAGTCCACTGAAGAAATGAGGGAAAACTTCAGCATTAATGCCACGTTCGAAG
131 ATTGGCAGGCCAAGAGTCCACTGAAGAAATGAGGGAAAACTTCAACATTAATGCCACGTTCGAAG
132118229 GAGGAACTGGAGAAGAGAATGGGACTGGCATTCGCCCTTATGAGCCAGAAAGTGCTTTGAATAAT
196 GAGGAACTGGAGAAGAGAATGGGACTGGCATTCGCCCTTATGAGCCAGAAAGTGCTTTGAATAAT
132118294 TGGACTGCGGAAGAGATTCCTGTAGTCA
261 TGGACTGCGGAAGAGATTCCTGTAGTCA
132118322 AGGAGCAAGAGAAGAAACGAGAAAGGAGAAGAGCGCGTTTGAACGGCGAAGAGATTAAATGGAAA
1 AGGAGCAAGAGAAGAAACGAGAAAGGAGAAGAGCGCGTTTGAACGGCGAAGAGATTAAATGGAAA
132118387 CCAATGACCTTTCCCCATATATCCAGAACATTTGTGTCAGGAGGAACTATTTATGCCGAAGGAAG
66 CCAATGACCTTTCCCCATATATCCAGAACATTTGTGTCAGGAGGAACTATTTATGCCGAAGGAAG
132118452 ATTGGCAGGCCAAGAGTCCACTGAAGAAATGAGGGAAAACTTCAACATTAATGCCACGTTCGAAG
131 ATTGGCAGGCCAAGAGTCCACTGAAGAAATGAGGGAAAACTTCAACATTAATGCCACGTTCGAAG
132118517 GAGGAACTGGAGAAGAGAATGGGACTGGCATTCGCCCTTATGAGCCAGAAAGTGCTTTGAATAAT
196 GAGGAACTGGAGAAGAGAATGGGACTGGCATTCGCCCTTATGAGCCAGAAAGTGCTTTGAATAAT
132118582 TGGACTGCGGAAGAGATTCCTGTAGTC
261 TGGACTGCGGAAGAGATTCCTGTAGTC
132118609 TTTAAAACTA
Statistics
Matches: 285, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
288 285 1.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (288 bp):
AGGAGCAAGAGAAGAAACGAGAAAGGAGAAGAGCGCGTTTGAACGGCGAAGAGATTAAATGGAAA
CCAATGACCTTTCCCCATATATCCAGAACATTTGTGTCAGGAGGAACTATTTATGCCGAAGGAAG
ATTGGCAGGCCAAGAGTCCACTGAAGAAATGAGGGAAAACTTCAACATTAATGCCACGTTCGAAG
GAGGAACTGGAGAAGAGAATGGGACTGGCATTCGCCCTTATGAGCCAGAAAGTGCTTTGAATAAT
TGGACTGCGGAAGAGATTCCTGTAGTCA
Found at i:132122299 original size:1 final size:1
Alignment explanation
Indices: 132122293--132122326 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
132122283 TACTTCGCCT
*
132122293 AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
132122327 GGAGAGAGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:132123687 original size:44 final size:44
Alignment explanation
Indices: 132123548--132123691 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 44
132123538 AGATCTTATC
* *
132123548 CCCCTAAGCAGTAGTGGTGTAGATCGAAGACGAAGAACCTTAAA
1 CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
* * * * * * * *
132123592 CCCCTAAGCAGT-GGGGTAACAGGT-TAA-ATTGCAG-ATCTT-AT
1 CCCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CGAAGAACCTTAAA
132123633 CTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
1 C-CCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
132123678 CCCCTAAGCAGTAG
1 CCCCTAAGCAGTAG
132123692 GGTAACAGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 16
0.69 0.17 0.15
Matches are distributed among these distances:
41 2 0.03
42 21 0.28
43 16 0.22
44 33 0.45
45 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.19
Consensus pattern (44 bp):
CCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGAACCTTAAA
Found at i:132123700 original size:86 final size:86
Alignment explanation
Indices: 132123500--132123702 Score: 334
Period size: 86 Copynumber: 2.4 Consensus size: 86
132123490 GTCATAAGGT
* ***
132123500 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
* *
132123565 TGTAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* *
132123586 CTTAAACCCCTAAGCAGTGGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
132123651 AGCAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
132123672 CTTAAACCCCTAAGCAGTAGGGTAACAGGTT
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTT
132123703 GAGTATACAG
Statistics
Matches: 108, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 108 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.20
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAGAAC
Found at i:132123725 original size:86 final size:86
Alignment explanation
Indices: 132123500--132123785 Score: 299
Period size: 86 Copynumber: 3.3 Consensus size: 86
132123490 GTCATAAGGT
* *** * ***
132123500 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCCCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTACAGATCTTAAAACCCTAAGCAGTAGTGG
* *
132123565 TGTAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* * ***
132123586 CTTAAACCCCTAAGCAGTGGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTACAGATCTTAAAACCCTAAGCAGTAGTGG
132123651 AGCAGATCGAAGACGAAGAAC
66 AGCAGATCGAAGACGAAGAAC
* *
132123672 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAGTATACAGATC-TAAAACCCTAAGCAGTAG-G
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAAT-TACAGATCTTAAAACCCTAAGCAGTAGTG
* * * *
132123735 GAAACAGATCAAAGATGACA-AGC
65 G-AGCAGATCGAAGACGA-AGAAC
* * * *
132123758 CGTAATCCCTTAAACAGTAGGGTAACAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAG
132123786 ACTAAAAATT
Statistics
Matches: 174, Mismatches: 23, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
85 2 0.01
86 164 0.94
87 8 0.05
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTACAGATCTTAAAACCCTAAGCAGTAGTGG
AGCAGATCGAAGACGAAGAAC
Found at i:132123877 original size:42 final size:42
Alignment explanation
Indices: 132123818--132123910 Score: 168
Period size: 42 Copynumber: 2.2 Consensus size: 42
132123808 CCTGAAACAG
* *
132123818 CAGTGGAGTTGATCGAAGCCGCAGCAGATCTCCTTGAAGTTT
1 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
132123860 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
1 CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
132123902 CAGTGGAGT
1 CAGTGGAGT
132123911 AGATTAAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (42 bp):
CAGTGGAGTTGATCGAAGCCACAGAAGATCTCCTTGAAGTTT
Found at i:132125254 original size:19 final size:18
Alignment explanation
Indices: 132125219--132125259 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
132125209 TTGTTAATTC
132125219 ACTTTTGTCCATTTTTTT
1 ACTTTTGTCCATTTTTTT
*
132125237 ACTTTT-TCTCATTATTTT
1 ACTTTTGTC-CATTTTTTT
132125255 A-TTTT
1 ACTTTT
132125260 AGTCTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.68
Consensus pattern (18 bp):
ACTTTTGTCCATTTTTTT
Found at i:132125333 original size:25 final size:24
Alignment explanation
Indices: 132125305--132125362 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
132125295 CTGCTATCAT
*
132125305 TATTATATT-TTATTTATTAGCATGG
1 TATTATATTATTA-TTATTA-CATAG
*
132125330 TATTATTATTATTATTATTACTTAG
1 TATTA-TATTATTATTATTACATAG
132125355 TATTATAT
1 TATTATAT
132125363 ACATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 13 0.45
26 10 0.34
27 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (24 bp):
TATTATATTATTATTATTACATAG
Found at i:132125416 original size:18 final size:19
Alignment explanation
Indices: 132125380--132125417 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
132125370 TATCATATAG
*
132125380 TATTATTAATTTGTTTTAA
1 TATTATTAATTTGTGTTAA
*
132125399 TATTATTATTTTG-GTTAA
1 TATTATTAATTTGTGTTAA
132125417 T
1 T
132125418 GTATTTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
TATTATTAATTTGTGTTAA
Found at i:132131642 original size:12 final size:12
Alignment explanation
Indices: 132131625--132131650 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
132131615 GAAAACAGAC
132131625 TTTTAGCGGCGT
1 TTTTAGCGGCGT
132131637 TTTTAGCGGCGT
1 TTTTAGCGGCGT
132131649 TT
1 TT
132131651 GGGCAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:132134132 original size:3 final size:3
Alignment explanation
Indices: 132134126--132134191 Score: 55
Period size: 3 Copynumber: 21.0 Consensus size: 3
132134116 ATTTAAGAAA
132134126 AAT AAT ACAT AAT ACAT AAT AAGT AAT AAT AAT ATAT AATT AA- AAT
1 AAT AAT A-AT AAT A-AT AAT AA-T AAT AAT AAT A-AT AA-T AAT AAT
* *
132134172 AAT ACT TAT AAT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
132134192 TTTATAATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
2 4 0.08
3 33 0.63
4 15 0.29
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:132134139 original size:7 final size:6
Alignment explanation
Indices: 132134126--132134191 Score: 55
Period size: 7 Copynumber: 10.5 Consensus size: 6
132134116 ATTTAAGAAA
*
132134126 AATAAT ACATAAT ACATAAT AAGTAAT AATAAT ATATAATT AA-AAT AATACT
1 AATAAT A-ATAAT A-ATAAT AA-TAAT AATAAT A-ATAA-T AATAAT AATAAT
*
132134178 TATAAT AA-AAT AAT
1 AATAAT AATAAT AAT
132134192 TTTATAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
5 8 0.16
6 16 0.32
7 24 0.48
8 2 0.04
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (6 bp):
AATAAT
Found at i:132134174 original size:16 final size:16
Alignment explanation
Indices: 132134134--132134191 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 16
132134124 AAAATAATAC
132134134 ATAATACATAATAAGTAATA
1 ATAATAC-T-ATAA-TAA-A
132134154 ATAATA-TATAATTAAA
1 ATAATACTATAA-TAAA
132134170 ATAATACTTATAATAAA
1 ATAATAC-TATAATAAA
132134187 ATAAT
1 ATAAT
132134192 TTTATAATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
16 7 0.20
17 16 0.46
18 6 0.17
20 6 0.17
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.34
Consensus pattern (16 bp):
ATAATACTATAATAAA
Found at i:132134190 original size:43 final size:43
Alignment explanation
Indices: 132134106--132134249 Score: 111
Period size: 43 Copynumber: 3.4 Consensus size: 43
132134096 TAAAAGAGAT
* **
132134106 GTAA-AATAATATTTAAGAAAAATAATAC--ATAATACATAATAA
1 GTAATAATAATATATAATTAAAATAATACTTATAATA-A-AATAA
132134148 GTAATAATAATATATAATTAAAATAATACTTATAATAAAATAA
1 GTAATAATAATATATAATTAAAATAATACTTATAATAAAATAA
* * * * **
132134191 -T-TTTATAATATATAATATAAAAGTAA-AATTAAAATAAAGCAA
1 GTAATAATAATATATAAT-TAAAA-TAATACTTATAATAAAATAA
*
132134233 ATAATAATATATATATA
1 GTAATAATA-ATATATA
132134250 GAATAATAAA
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
41 13 0.16
42 22 0.27
43 30 0.36
44 5 0.06
45 13 0.16
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (43 bp):
GTAATAATAATATATAATTAAAATAATACTTATAATAAAATAA
Found at i:132134198 original size:16 final size:17
Alignment explanation
Indices: 132134150--132134200 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 17
132134140 CATAATAAGT
*
132134150 AATAATAATATATAATTAA
1 AATAATACT-TATAA-TAA
132134169 AATAATACTTATAATAA
1 AATAATACTTATAATAA
*
132134186 AATAAT-TTTATAATA
1 AATAATACTTATAATA
132134201 TATAATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 8 0.27
17 9 0.30
18 5 0.17
19 8 0.27
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATACTTATAATAA
Found at i:132134206 original size:7 final size:7
Alignment explanation
Indices: 132134127--132134209 Score: 50
Period size: 7 Copynumber: 12.1 Consensus size: 7
132134117 TTTAAGAAAA
*
132134127 ATAATAC
1 ATAATAT
*
132134134 ATAATAC
1 ATAATAT
132134141 ATAATA-
1 ATAATAT
132134147 AGTAATA-
1 A-TAATAT
132134154 ATAATAT
1 ATAATAT
132134161 ATAAT-T
1 ATAATAT
*
132134167 AAAATA-
1 ATAATAT
*
132134173 ATACT-T
1 ATAATAT
*
132134179 ATAATAAA
1 ATAAT-AT
*
132134187 ATAATTTT
1 ATAA-TAT
132134195 ATAATAT
1 ATAATAT
132134202 ATAATAT
1 ATAATAT
132134209 A
1 A
132134210 AAAGTAAAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
6 18 0.30
7 34 0.56
8 8 0.13
9 1 0.02
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (7 bp):
ATAATAT
Found at i:132134240 original size:41 final size:41
Alignment explanation
Indices: 132134150--132134258 Score: 116
Period size: 41 Copynumber: 2.7 Consensus size: 41
132134140 CATAATAAGT
* * *
132134150 AATAATAATATATAAT-TAAAATAATACTTATAATAAAATA
1 AATAATAATATATAATATAAAATAATAATTAAAATAAAACA
* * *
132134190 ATTTTATAATATATAATATAAAAGTAA-AATTAAAATAAAGCA
1 A-ATAATAATATATAATATAAAA-TAATAATTAAAATAAAACA
*
132134232 AATAATAATATAT-ATATAGAATAATAA
1 AATAATAATATATAATATAAAATAATAA
132134259 ATATAGGACT
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
39 3 0.05
40 10 0.18
41 23 0.41
42 17 0.30
43 3 0.05
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (41 bp):
AATAATAATATATAATATAAAATAATAATTAAAATAAAACA
Found at i:132136110 original size:119 final size:119
Alignment explanation
Indices: 132135899--132136371 Score: 750
Period size: 119 Copynumber: 4.0 Consensus size: 119
132135889 CTTGAGTCTG
* * * *
132135899 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
132135964 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTAAAGGTTAGATCTGTTGTA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
132136018 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTATTCCTTGTAAATACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
132136083 CAAATCATCTTAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
132136137 TTTGAGAACGTCTGAAAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
*
132136202 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTCTA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* * *
132136256 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCAACTTGTTTCTTGTAAACACAAGAATAC
1 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
** **
132136321 CAAATCATCTTGGATCTGCTTCAACATAAATGTCTGAA-GTCTAGATCTGCT
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGT-TAGATCTGCT
132136372 GTCTTCAATT
Statistics
Matches: 330, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
118 2 0.01
119 328 0.99
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (119 bp):
TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:132138144 original size:39 final size:39
Alignment explanation
Indices: 132138101--132138254 Score: 202
Period size: 39 Copynumber: 3.9 Consensus size: 39
132138091 TCGTTCAAAC
* * ** *
132138101 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAA-T
1 GCCTTCGGG-CTTAGCCCGGATATGACAACTCGCACAATT
* *
132138140 GCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATGACAACTCGCACAATT
132138180 GCCTTCGGGCTTAGCCCGGATATGACAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATGACAACTCGCACAATT
* *
132138219 GCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 GCCTTCGGGCTTAGCCCGGATATGACAACTCGCACA
132138255 TTCATACACA
Statistics
Matches: 103, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 93 0.90
40 10 0.10
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATGACAACTCGCACAATT
Found at i:132148753 original size:26 final size:26
Alignment explanation
Indices: 132148723--132148804 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
132148713 TGAAATTCCC
132148723 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
132148749 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
132148775 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
132148801 ATCA
1 ATCA
132148805 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:132153859 original size:35 final size:35
Alignment explanation
Indices: 132153802--132153913 Score: 94
Period size: 33 Copynumber: 3.2 Consensus size: 35
132153792 TAAAGATTAT
* *
132153802 ATAATAAAATGTAATATA-AACATATAAGAAAAATA
1 ATAATATAAT-TAATAAATAACATATAAGAAAAATA
132153837 ATAGATATAA-T-ATAAAGTAACATAT-A-AAAAAT-
1 ATA-ATATAATTAATAAA-TAACATATAAGAAAAATA
*
132153869 ATATATATAATTAATAAATATA-ATATATGAAAATATA
1 ATA-ATATAATTAATAAATA-ACATATAAGAAAA-ATA
132153906 ATAATATA
1 ATAATATA
132153914 TAAAAGAGAT
Statistics
Matches: 63, Mismatches: 4, Indels: 19
0.73 0.05 0.22
Matches are distributed among these distances:
32 9 0.14
33 17 0.27
34 8 0.13
35 14 0.22
36 12 0.19
37 3 0.05
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (35 bp):
ATAATATAATTAATAAATAACATATAAGAAAAATA
Found at i:132153950 original size:3 final size:3
Alignment explanation
Indices: 132153944--132154002 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
132153934 ATTTAAGAAA
* *
132153944 AAT AAT ACAT AAT AAGT AAT AAT AAT ATAT AATT AA- AAT AAT ACT TAT
1 AAT AAT A-AT AAT AA-T AAT AAT AAT A-AT AA-T AAT AAT AAT AAT AAT
132153992 AAT AA- AAT AAT
1 AAT AAT AAT AAT
132154003 TTTATAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
2 4 0.09
3 30 0.65
4 12 0.26
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:132153957 original size:7 final size:6
Alignment explanation
Indices: 132153944--132154002 Score: 50
Period size: 7 Copynumber: 9.5 Consensus size: 6
132153934 ATTTAAGAAA
* *
132153944 AATAAT ACATAAT AAGTAAT AATAAT ATATAATT AA-AAT AATACT TATAAT
1 AATAAT A-ATAAT AA-TAAT AATAAT A-ATAA-T AATAAT AATAAT AATAAT
132153995 AA-AAT AAT
1 AATAAT AAT
132154003 TTTATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
5 8 0.19
6 16 0.37
7 17 0.40
8 2 0.05
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (6 bp):
AATAAT
Found at i:132153970 original size:36 final size:34
Alignment explanation
Indices: 132153924--132154006 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
132153914 TAAAAGAGAT
132153924 GTAAAATAATATTTAAGAAAAATAATACATAATAA
1 GTAAAATAATATTTAAGAAAAATAATAC-TAATAA
* ** *
132153959 GTAATAATAATATATAATTAAAATAATACTTATAA
1 GTAA-AATAATATTTAAGAAAAATAATACTAATAA
132153994 -TAAAATAAT-TTTA
1 GTAAAATAATATTTA
132154007 TAATATATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.07
33 6 0.14
34 3 0.07
35 9 0.21
36 21 0.50
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (34 bp):
GTAAAATAATATTTAAGAAAAATAATACTAATAA
Found at i:132153985 original size:16 final size:16
Alignment explanation
Indices: 132153924--132154002 Score: 70
Period size: 16 Copynumber: 4.6 Consensus size: 16
132153914 TAAAAGAGAT
*
132153924 GTAAAATAATATTTAA
1 GTAAAATAATATATAA
*
132153940 GAAAAATAATACATAATAA
1 GTAAAATAAT--AT-ATAA
132153959 GTAATAATAATATATAA
1 GTAA-AATAATATATAA
*
132153976 TTAAAATAATACTTATAA
1 GTAAAATAATA--TATAA
132153994 -TAAAATAAT
1 GTAAAATAAT
132154003 TTTATAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
16 16 0.30
17 16 0.30
18 9 0.17
19 6 0.11
20 6 0.11
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.33
Consensus pattern (16 bp):
GTAAAATAATATATAA
Found at i:132154009 original size:16 final size:17
Alignment explanation
Indices: 132153925--132154011 Score: 67
Period size: 16 Copynumber: 5.1 Consensus size: 17
132153915 AAAAGAGATG
132153925 TAAAATAATA-TT-TAA
1 TAAAATAATACTTATAA
*
132153940 GAAAAATAATAC--ATAA
1 -TAAAATAATACTTATAA
*
132153956 TAAGTAATAATAATATATAA
1 TAA--AATAATACT-TATAA
132153976 TTAAAATAATACTTATAA
1 -TAAAATAATACTTATAA
*
132153994 TAAAATAAT-TTTATAA
1 TAAAATAATACTTATAA
132154010 TA
1 TA
132154012 TATAATATAA
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
15 2 0.03
16 20 0.34
17 16 0.28
18 5 0.09
19 8 0.14
20 4 0.07
21 3 0.05
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (17 bp):
TAAAATAATACTTATAA
Found at i:132155842 original size:15 final size:15
Alignment explanation
Indices: 132155824--132155855 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
132155814 TTTAATTTAG
132155824 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
132155839 AAGATAAATATATAT
1 AAGATAAATATAAAT
132155854 AA
1 AA
132155856 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:132156637 original size:24 final size:25
Alignment explanation
Indices: 132156605--132156655 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
132156595 GTTTGCCCCG
* * *
132156605 ATTCTGAAAT-CCCAATTTCCCTAA
1 ATTCAGAAATCCCCAAATTCCCCAA
132156629 ATTCAGAAATCCCCAAATTCCCCAA
1 ATTCAGAAATCCCCAAATTCCCCAA
132156654 AT
1 AT
132156656 CGGCAAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 9 0.39
25 14 0.61
ACGTcount: A:0.37, C:0.31, G:0.04, T:0.27
Consensus pattern (25 bp):
ATTCAGAAATCCCCAAATTCCCCAA
Found at i:132156735 original size:37 final size:37
Alignment explanation
Indices: 132156675--132156799 Score: 151
Period size: 37 Copynumber: 3.4 Consensus size: 37
132156665 TTCCCCCAAA
* **
132156675 TCTCCCTGTGCATTACAACCCATCTCCTCCATCGCCT
1 TCTCCCCGTGCATCGCAACCCATCTCCTCCATCGCCT
* *
132156712 TCTCCCCGTGCATCGCAAACCATCCCCTCCATCGCCT
1 TCTCCCCGTGCATCGCAACCCATCTCCTCCATCGCCT
* * * *
132156749 TCACACCGTTCATCGCAACCCATCTTCTCCATCGCCT
1 TCTCCCCGTGCATCGCAACCCATCTCCTCCATCGCCT
* *
132156786 TCGCCTCGTGCATC
1 TCTCCCCGTGCATC
132156800 TGCTGCATAG
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.16, C:0.47, G:0.10, T:0.26
Consensus pattern (37 bp):
TCTCCCCGTGCATCGCAACCCATCTCCTCCATCGCCT
Found at i:132158361 original size:14 final size:13
Alignment explanation
Indices: 132158338--132158367 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
132158328 ATTACTATAA
132158338 TAATTATATGAAG
1 TAATTATATGAAG
132158351 TAATATATATGAAG
1 TAAT-TATATGAAG
132158365 TAA
1 TAA
132158368 AATTATATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (13 bp):
TAATTATATGAAG
Found at i:132159835 original size:17 final size:17
Alignment explanation
Indices: 132159813--132159846 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
132159803 AATGTTTCTA
*
132159813 ATTCAAAATTAATATAT
1 ATTCAAAAGTAATATAT
132159830 ATTCAAAAGTAATATAT
1 ATTCAAAAGTAATATAT
132159847 TGTTTTCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (17 bp):
ATTCAAAAGTAATATAT
Found at i:132159885 original size:9 final size:9
Alignment explanation
Indices: 132159871--132160310 Score: 87
Period size: 9 Copynumber: 50.8 Consensus size: 9
132159861 CCAACAACTC
132159871 ACATAATTT
1 ACATAATTT
132159880 ACATAATTT
1 ACATAATTT
132159889 ACATAA--T
1 ACATAATTT
*
132159896 ACATAACTT
1 ACATAATTT
132159905 ACATAATTT
1 ACATAATTT
*
132159914 --A-AAGTT
1 ACATAATTT
132159920 -CA-AATTT
1 ACATAATTT
*
132159927 -CATAACTT
1 ACATAATTT
132159935 ACATAATTT
1 ACATAATTT
*
132159944 AC-TTATCTT
1 ACATAAT-TT
132159953 ACATAA--T
1 ACATAATTT
* *
132159960 ACATGACTT
1 ACATAATTT
132159969 ACATAATTT
1 ACATAATTT
*
132159978 AAAGATCAAATTT
1 --ACAT--AATTT
*
132159991 -CATAACTT
1 ACATAATTT
*
132159999 ACATGA--T
1 ACATAATTT
*
132160006 ACATAACTT
1 ACATAATTT
132160015 ACATAATTT
1 ACATAATTT
132160024 AAAGACCA-AATTT
1 ----A-CATAATTT
*
132160037 -CATAAGTT
1 ACATAATTT
132160045 ACA-ACATTT
1 ACATA-ATTT
*
132160054 ACATAACTT
1 ACATAATTT
132160063 ACATAATAATT
1 ACATAAT--TT
* *
132160074 -TA-AAGTT
1 ACATAATTT
132160081 -CA-AATTT
1 ACATAATTT
*
132160088 -CATAAGTT
1 ACATAATTT
*
132160096 ACAAAATTT
1 ACATAATTT
*
132160105 ACATAACTT
1 ACATAATTT
132160114 ACATAATAATT
1 ACATAAT--TT
* *
132160125 -TA-AAGTT
1 ACATAATTT
132160132 -CA-AATTT
1 ACATAATTT
*
132160139 -CATAACTT
1 ACATAATTT
132160147 ACATAATTT
1 ACATAATTT
*
132160156 AAAGATCAAATTT
1 --ACAT--AATTT
*
132160169 -CATAAGTT
1 ACATAATTT
132160177 ACATAATTT
1 ACATAATTT
**
132160186 ACATAACGTAC
1 ACATAA--TTT
132160197 ACAATAATTT
1 AC-ATAATTT
*
132160207 --A-AAGTT
1 ACATAATTT
132160213 -CA-AATTT
1 ACATAATTT
*
132160220 -CATAACTT
1 ACATAATTT
132160228 ACATAA--T
1 ACATAATTT
*
132160235 ACATAACTT
1 ACATAATTT
132160244 ACATAA--T
1 ACATAATTT
*
132160251 ACATAACTT
1 ACATAATTT
***
132160260 ACATAAAAG
1 ACATAATTT
*
132160269 ATCA-AAATT
1 A-CATAATTT
*
132160278 -CATGATTT
1 ACATAATTT
132160286 ACATAATTT
1 ACATAATTT
*
132160295 ACATAACTT
1 ACATAATTT
132160304 ACATAAT
1 ACATAAT
132160311 ACATGACTTA
Statistics
Matches: 323, Mismatches: 57, Indels: 102
0.67 0.12 0.21
Matches are distributed among these distances:
6 8 0.02
7 71 0.22
8 35 0.11
9 162 0.50
10 12 0.04
11 13 0.04
12 4 0.01
13 16 0.05
14 2 0.01
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (9 bp):
ACATAATTT
Found at i:132159900 original size:16 final size:16
Alignment explanation
Indices: 132159879--132160021 Score: 82
Period size: 16 Copynumber: 9.1 Consensus size: 16
132159869 TCACATAATT
*
132159879 TACATAATTTACATAA
1 TACATAACTTACATAA
132159895 TACATAACTTACATAA
1 TACATAACTTACATAA
** *
132159911 TTTA-AAGTT-CA-AA
1 TACATAACTTACATAA
*
132159924 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
* *
132159941 TTTACTTATCTTACATAA
1 --TACATAACTTACATAA
*
132159959 TACATGACTTACATAA
1 TACATAACTTACATAA
** **
132159975 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
132159988 TTTCATAACTTACATGA
1 -TACATAACTTACATAA
132160005 TACATAACTTACATAA
1 TACATAACTTACATAA
132160021 T
1 T
132160022 TTAAAGACCA
Statistics
Matches: 95, Mismatches: 23, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
13 4 0.04
14 10 0.11
15 13 0.14
16 51 0.54
17 3 0.03
18 14 0.15
ACGTcount: A:0.44, C:0.15, G:0.03, T:0.38
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:132159914 original size:34 final size:34
Alignment explanation
Indices: 132159866--132159978 Score: 121
Period size: 34 Copynumber: 3.4 Consensus size: 34
132159856 GTTCACCAAC
*
132159866 AACTCACATAATTTACATAATTTACATAATACAT
1 AACTTACATAATTTACATAATTTACATAATACAT
* *
132159900 AACTTACATAATTT--A-AAGTT-CA-AATTTCAT
1 AACTTACATAATTTACATAATTTACATAA-TACAT
*
132159930 AACTTACATAATTTAC-TTATCTTACATAATACAT
1 AACTTACATAATTTACATAAT-TTACATAATACAT
*
132159964 GACTTACATAATTTA
1 AACTTACATAATTTA
132159979 AAGATCAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
29 2 0.03
30 20 0.31
31 4 0.06
32 2 0.03
33 2 0.03
34 33 0.51
35 2 0.03
ACGTcount: A:0.43, C:0.16, G:0.02, T:0.39
Consensus pattern (34 bp):
AACTTACATAATTTACATAATTTACATAATACAT
Found at i:132159933 original size:30 final size:30
Alignment explanation
Indices: 132159897--132160186 Score: 169
Period size: 30 Copynumber: 9.6 Consensus size: 30
132159887 TTACATAATA
132159897 CATAACTTACATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
** *
132159927 CATAACTTACATAATTTACTTATCTTACATAA-TA
1 CATAACTTACATAATTTA---AAGTT-CA-AATTT
* *
132159961 CATGACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
* ** *
132159991 CATAACTTACATGATACATAACTTACATAATTT
1 CATAACTTACATAATTTA-AAGTT-CA-AATTT
*
132160024 -A-AA--GACCA-AATTTCATAAGTTACAACATTT
1 CATAACTTA-CATAATTT-A-AAGTT-CAA-ATTT
132160054 ACATAACTTACATAATAATTTAAAGTTCAAATTT
1 -CATAACTTAC---ATAATTTAAAGTTCAAATTT
* * *
132160088 CATAAGTTACAAAATTTACA--T--AA---
1 CATAACTTACATAATTTAAAGTTCAAATTT
* *
132160111 C-TTACATA-ATAATTTAAAGTTCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
*
132160139 CATAACTTACATAATTTAAAGATCAAATTT
1 CATAACTTACATAATTTAAAGTTCAAATTT
*
132160169 CATAAGTTACATAATTTA
1 CATAACTTACATAATTTA
132160187 CATAACGTAC
Statistics
Matches: 198, Mismatches: 32, Indels: 60
0.68 0.11 0.21
Matches are distributed among these distances:
21 8 0.04
22 4 0.02
23 2 0.01
25 2 0.01
26 2 0.01
28 2 0.01
29 11 0.06
30 94 0.47
31 7 0.04
32 4 0.02
33 19 0.10
34 25 0.13
35 6 0.03
36 5 0.03
37 2 0.01
38 5 0.03
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (30 bp):
CATAACTTACATAATTTAAAGTTCAAATTT
Found at i:132159955 original size:64 final size:64
Alignment explanation
Indices: 132159866--132160021 Score: 228
Period size: 64 Copynumber: 2.5 Consensus size: 64
132159856 GTTCACCAAC
* *
132159866 AACTCACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCAT
1 AACTTACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
132159930 AACTTACATAATTTAC-TTATCTTACATAATACATGACTTACATAATTTAAAGATCAAATTTCAT
1 AACTTACATAATTTACATAAT-TTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
* *
132159994 AACTTACATGA--TACATAACTTACATAAT
1 AACTTACATAATTTACATAATTTACATAAT
132160022 TTAAAGACCA
Statistics
Matches: 83, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
62 12 0.14
63 5 0.06
64 66 0.80
ACGTcount: A:0.44, C:0.16, G:0.03, T:0.37
Consensus pattern (64 bp):
AACTTACATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAT
Found at i:132160008 original size:46 final size:48
Alignment explanation
Indices: 132159950--132160154 Score: 240
Period size: 51 Copynumber: 4.2 Consensus size: 48
132159940 ATTTACTTAT
*
132159950 CTTACATAA-TACATGACTTAC-ATAATTTAAAGATCAAATTTCATAA
1 CTTACATAATTACATAACTTACAATAATTTAAAGATCAAATTTCATAA
* *
132159996 CTTACATGA-TACATAACTTAC-ATAATTTAAAGACCAAATTTCATAA
1 CTTACATAATTACATAACTTACAATAATTTAAAGATCAAATTTCATAA
* *
132160042 GTTACA-ACATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCATAA
1 CTTACATA-A-TTACATAACTTAC--AATAATTTAAAGATCAAATTTCATAA
* * *
132160093 GTTACAAAATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCATAA
1 CTTACATAA-TTACATAACTTAC--AATAATTTAAAGATCAAATTTCATAA
132160144 CTTACATAATT
1 CTTACATAATT
132160155 TAAAGATCAA
Statistics
Matches: 143, Mismatches: 9, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
46 49 0.34
48 12 0.08
50 2 0.01
51 79 0.55
52 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (48 bp):
CTTACATAATTACATAACTTACAATAATTTAAAGATCAAATTTCATAA
Found at i:132160020 original size:110 final size:104
Alignment explanation
Indices: 132159872--132160156 Score: 310
Period size: 110 Copynumber: 2.7 Consensus size: 104
132159862 CAACAACTCA
132159872 CATAATTTACATAATTTACATAATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTAC
1 CATAATTT-CATAATTTACAT-ATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTAC
* * *
132159937 ATAATTTACTTATCTTACATAATACATGACTTACATAATTTAAAGAT
64 ATAATTTACATAACTTACATAATA-AT---TTA-A-AATTCAAAGAT
* ** *
132159984 CA-AATTTCATAACTTACATGATACATAACTTACATAATTTAAAGACCAAATTTCATAAGTTACA
1 CATAATTTCATAATTTACAT-ATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACA
* **
132160048 -ACATTTACATAACTTACATAATAATTTAAAGTTCAAATTT
65 TA-ATTTACATAACTTACATAATAATTTAAAATTCAAAGAT
* * * *
132160088 CATAAGTTACAAAATTTACATA-AC-TTACATA-ATAATTTAAAGTTCAAATTTCATAACTTACA
1 CATAA-TTTCATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACA
132160150 TAATTTA
65 TAATTTA
132160157 AAGATCAAAT
Statistics
Matches: 150, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
102 33 0.22
103 6 0.04
104 11 0.07
105 4 0.03
106 15 0.10
109 3 0.02
110 71 0.47
111 5 0.03
112 2 0.01
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.38
Consensus pattern (104 bp):
CATAATTTCATAATTTACATATACATAACTTACATAATTTAAAGTTCAAATTTCATAACTTACAT
AATTTACATAACTTACATAATAATTTAAAATTCAAAGAT
Found at i:132160086 original size:51 final size:51
Alignment explanation
Indices: 132159971--132160156 Score: 256
Period size: 51 Copynumber: 3.7 Consensus size: 51
132159961 CATGACTTAC
**
132159971 ATAATTTAAAGATCAAATTTCATAACTTACATGA--TACATAACTTAC---
1 ATAATTTAAAGATCAAATTTCATAACTTACAAAATTTACATAACTTACATA
* * *
132160017 ATAATTTAAAGACCAAATTTCATAAGTTACAACATTTACATAACTTACATA
1 ATAATTTAAAGATCAAATTTCATAACTTACAAAATTTACATAACTTACATA
* *
132160068 ATAATTTAAAGTTCAAATTTCATAAGTTACAAAATTTACATAACTTACATA
1 ATAATTTAAAGATCAAATTTCATAACTTACAAAATTTACATAACTTACATA
* *
132160119 ATAATTTAAAGTTCAAATTTCATAACTTACATAATTTA
1 ATAATTTAAAGATCAAATTTCATAACTTACAAAATTTA
132160157 AAGATCAAAT
Statistics
Matches: 126, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
46 30 0.24
48 12 0.10
51 84 0.67
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.37
Consensus pattern (51 bp):
ATAATTTAAAGATCAAATTTCATAACTTACAAAATTTACATAACTTACATA
Found at i:132160104 original size:81 final size:78
Alignment explanation
Indices: 132160007--132160234 Score: 241
Period size: 81 Copynumber: 2.8 Consensus size: 78
132159997 TTACATGATA
*
132160007 CATAACTTACATAATTTA-A-AGAC-CA-AAT-TTCATAAGTTACAACATTTACATAACTTACAT
1 CATAAGTTACATAATTTACATA-ACTCATAATATTCA-AAGTT-CAA-ATTT-CATAACTTAC--
*
132160067 AATAATTTAAAGTTCAAATTT
59 -ATAATTTAAAGATCAAATTT
* *
132160088 CATAAGTTACAAAATTTACATAACTTACATAATAATTTAAAGTTCAAATTTCATAACTTACATAA
1 CATAAGTTACATAATTTACATAAC-T-CATAAT-ATTCAAAGTTCAAATTTCATAACTTACATAA
132160153 TTTAAAGATCAAATTT
63 TTTAAAGATCAAATTT
* *
132160169 CATAAGTTACATAATTTACATAACGTACACAATAATTTAAAGTTCAAATTTCATAACTTACATAA
1 CATAAGTTACATAATTTACATAAC-T-CATAAT-ATTCAAAGTTCAAATTTCATAACTTACATAA
132160234 T
63 T
132160235 ACATAACTTA
Statistics
Matches: 132, Mismatches: 7, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
81 98 0.74
82 3 0.02
83 1 0.01
84 10 0.08
85 6 0.05
86 6 0.05
87 5 0.04
88 3 0.02
ACGTcount: A:0.46, C:0.14, G:0.04, T:0.36
Consensus pattern (78 bp):
CATAAGTTACATAATTTACATAACTCATAATATTCAAAGTTCAAATTTCATAACTTACATAATTT
AAAGATCAAATTT
Found at i:132160155 original size:132 final size:130
Alignment explanation
Indices: 132160007--132160251 Score: 411
Period size: 132 Copynumber: 1.9 Consensus size: 130
132159997 TTACATGATA
* *
132160007 CATAACTTACATAATTTAAAGACCAAATTTCATAAGTTACA-ACATTTACATAACTTACATAATA
1 CATAACTTACATAATTTAAAGACCAAATTTCATAAGTTACATA-ATTTACATAACGTACACAATA
*
132160071 ATTTAAAGTTCAAATTTCATAAGTTACAAAATTTACATAACTTACATAATAATTTAAAGTTCAAA
65 ATTTAAAGTTCAAATTTCATAACTTACAAAA--TACATAACTTACATAATAATTTAAAGTTCAAA
132160136 TTT
128 TTT
*
132160139 CATAACTTACATAATTTAAAGATCAAATTTCATAAGTTACATAATTTACATAACGTACACAATAA
1 CATAACTTACATAATTTAAAGACCAAATTTCATAAGTTACATAATTTACATAACGTACACAATAA
*
132160204 TTTAAAGTTCAAATTTCATAACTTACATAATACATAACTTACATAATA
66 TTTAAAGTTCAAATTTCATAACTTACAAAATACATAACTTACATAATA
132160252 CATAACTTAC
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
130 18 0.17
132 88 0.82
133 1 0.01
ACGTcount: A:0.47, C:0.14, G:0.04, T:0.36
Consensus pattern (130 bp):
CATAACTTACATAATTTAAAGACCAAATTTCATAAGTTACATAATTTACATAACGTACACAATAA
TTTAAAGTTCAAATTTCATAACTTACAAAATACATAACTTACATAATAATTTAAAGTTCAAATTT
Found at i:132160204 original size:51 final size:49
Alignment explanation
Indices: 132160149--132160251 Score: 152
Period size: 51 Copynumber: 2.1 Consensus size: 49
132160139 CATAACTTAC
*
132160149 ATAATTTAAAGATCAAATTTCATAAGTTACATAATTTACATAACGTACACA
1 ATAATTTAAAGATCAAATTTCATAACTTACATAA--TACATAACGTACACA
* * *
132160200 ATAATTTAAAGTTCAAATTTCATAACTTACATAATACATAACTTACATA
1 ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACGTACACA
132160249 ATA
1 ATA
132160252 CATAACTTAC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 16 0.33
51 32 0.67
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.35
Consensus pattern (49 bp):
ATAATTTAAAGATCAAATTTCATAACTTACATAATACATAACGTACACA
Found at i:132160241 original size:16 final size:16
Alignment explanation
Indices: 132160220--132160325 Score: 98
Period size: 16 Copynumber: 6.9 Consensus size: 16
132160210 GTTCAAATTT
132160220 CATAACTTACATAATA
1 CATAACTTACATAATA
132160236 CATAACTTACATAATA
1 CATAACTTACATAATA
132160252 CATAACTTACATAA-A
1 CATAACTTACATAATA
* * *
132160267 -A-GA--T-CAAAATT
1 CATAACTTACATAATA
* *
132160278 CATGATTTACATAATTTA
1 CATAACTTACATAA--TA
132160296 CATAACTTACATAATA
1 CATAACTTACATAATA
*
132160312 CATGACTTACATAA
1 CATAACTTACATAA
132160326 CTTAATTATA
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
10 4 0.05
11 1 0.01
12 1 0.01
13 3 0.04
14 1 0.01
15 2 0.03
16 49 0.66
18 13 0.18
ACGTcount: A:0.48, C:0.17, G:0.03, T:0.32
Consensus pattern (16 bp):
CATAACTTACATAATA
Done.