Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 44 of 433
Found at i:11889603 original size:3 final size:3
Alignment explanation
Indices: 11889595--11889651 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
11889585 TTTATAATGT
* * * * * * *
11889595 TGC TGC TGC TGT TGT TGT TGC TGC TGT TGT TGA TGC AGC TGC TGC TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
11889643 TGC TGC TGC
1 TGC TGC TGC
11889652 ATTTTATACA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.04, C:0.23, G:0.33, T:0.40
Consensus pattern (3 bp):
TGC
Found at i:11889615 original size:18 final size:18
Alignment explanation
Indices: 11889591--11889641 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
11889581 CCAGTTTATA
11889591 ATGTTGCTGCTGCTGTTG
1 ATGTTGCTGCTGCTGTTG
* *
11889609 TTGTTGCTGCTGTTGTTG
1 ATGTTGCTGCTGCTGTTG
**
11889627 ATGCAGCTGCTGCTG
1 ATGTTGCTGCTGCTG
11889642 CTGCTGCTGC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.06, C:0.18, G:0.33, T:0.43
Consensus pattern (18 bp):
ATGTTGCTGCTGCTGTTG
Found at i:11889616 original size:15 final size:15
Alignment explanation
Indices: 11889592--11889650 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
11889582 CAGTTTATAA
11889592 TGTTGCTGCTGCTGT
1 TGTTGCTGCTGCTGT
*
11889607 TGTTGTTGCTGCTGT
1 TGTTGCTGCTGCTGT
* * *
11889622 TGTTGATGCAGCTGC
1 TGTTGCTGCTGCTGT
*
11889637 TGCTGCTGCTGCTG
1 TGTTGCTGCTGCTG
11889651 CATTTTATAC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.03, C:0.20, G:0.34, T:0.42
Consensus pattern (15 bp):
TGTTGCTGCTGCTGT
Found at i:11890392 original size:12 final size:12
Alignment explanation
Indices: 11890386--11890423 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
11890376 ATGTTGCTGT
*
11890386 TGCTGTTGTTGC
1 TGCTGCTGTTGC
*
11890398 TGCTGCTGGTGC
1 TGCTGCTGTTGC
11890410 TGCTGCTGTTGC
1 TGCTGCTGTTGC
11890422 TG
1 TG
11890424 ATGATGATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.21, G:0.37, T:0.42
Consensus pattern (12 bp):
TGCTGCTGTTGC
Found at i:11890397 original size:15 final size:15
Alignment explanation
Indices: 11890377--11890420 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
11890367 ATGCTGATGA
*
11890377 TGTTGCTGTTGCTGT
1 TGTTGCTGCTGCTGT
11890392 TGTTGCTGCTGCTG-
1 TGTTGCTGCTGCTGT
11890406 -G-TGCTGCTGCTGT
1 TGTTGCTGCTGCTGT
11890419 TG
1 TG
11890421 CTGATGATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 11 0.42
13 1 0.04
14 1 0.04
15 13 0.50
ACGTcount: A:0.00, C:0.18, G:0.36, T:0.45
Consensus pattern (15 bp):
TGTTGCTGCTGCTGT
Found at i:11893538 original size:2 final size:2
Alignment explanation
Indices: 11893531--11893563 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
11893521 ATACATACAG
*
11893531 AT AT AT AT AT AT AT AT AT AT -T AA AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11893564 TGCTTGCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:11894096 original size:28 final size:26
Alignment explanation
Indices: 11894065--11894131 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
11894055 TTAATTAAGT
11894065 TTTTAAAATTAAAAAATATTTTTTATAA
1 TTTTAAAATTAAAAAATA-TTTTT-TAA
* **
11894093 TTTTAATATTTTAAAATATTTTTTAA
1 TTTTAAAATTAAAAAATATTTTTTAA
11894119 TTTTAAAAATTAA
1 TTTT-AAAATTAA
11894132 TTAATTGCTA
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
26 7 0.22
27 10 0.31
28 15 0.47
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTTAAAATTAAAAAATATTTTTTAA
Found at i:11894137 original size:17 final size:18
Alignment explanation
Indices: 11894100--11894137 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
11894090 TAATTTTAAT
**
11894100 ATTTTAAAATATTTTTTA
1 ATTTTAAAATATTAATTA
11894118 ATTTTAAAA-ATTAATTA
1 ATTTTAAAATATTAATTA
11894135 ATT
1 ATT
11894138 GCTATGTGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAAAATATTAATTA
Found at i:11895039 original size:17 final size:17
Alignment explanation
Indices: 11895017--11895049 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11895007 ATAAATAATT
*
11895017 AAAATATTTTAAATATA
1 AAAATATTTGAAATATA
11895034 AAAATATTTGAAATAT
1 AAAATATTTGAAATAT
11895050 CATACCCACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
AAAATATTTGAAATATA
Found at i:11897080 original size:34 final size:34
Alignment explanation
Indices: 11897034--11897109 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
11897024 CTCATTTTTT
*
11897034 TTTTC-TTTCTTTTTCT-TCTTAACA-CTCACTCAC
1 TTTTCTTTTCTTTTT-TATCTCAACATC-CACTCAC
11897067 TTTTCTTTTCTTTTTTATCTCAACATCCACTCAC
1 TTTTCTTTTCTTTTTTATCTCAACATCCACTCAC
*
11897101 TTTTTTTTT
1 TTTTCTTTT
11897110 TTAGCTGCGA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
33 6 0.16
34 31 0.82
35 1 0.03
ACGTcount: A:0.14, C:0.26, G:0.00, T:0.59
Consensus pattern (34 bp):
TTTTCTTTTCTTTTTTATCTCAACATCCACTCAC
Found at i:11902983 original size:12 final size:12
Alignment explanation
Indices: 11902968--11902993 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11902958 TTTTGCCTCT
11902968 ATATCCTCAATG
1 ATATCCTCAATG
11902980 ATATCCTCAATG
1 ATATCCTCAATG
11902992 AT
1 AT
11902994 TGCTTGTACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.35
Consensus pattern (12 bp):
ATATCCTCAATG
Found at i:11903906 original size:32 final size:34
Alignment explanation
Indices: 11903853--11903924 Score: 112
Period size: 32 Copynumber: 2.2 Consensus size: 34
11903843 AACTCTCACT
*
11903853 CTTTTTCTTTCTTTTTCTTCTCAACACTCGCTCA
1 CTTTTTCTTTCTTTTTCTTCTCAACACTCACTCA
*
11903887 CTTTTTCTTT-TTTTT-TTCTCAACATTCACTCA
1 CTTTTTCTTTCTTTTTCTTCTCAACACTCACTCA
11903919 CTTTTT
1 CTTTTT
11903925 TCAGCTGCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
32 21 0.58
33 5 0.14
34 10 0.28
ACGTcount: A:0.12, C:0.28, G:0.01, T:0.58
Consensus pattern (34 bp):
CTTTTTCTTTCTTTTTCTTCTCAACACTCACTCA
Found at i:11910519 original size:22 final size:22
Alignment explanation
Indices: 11910488--11910532 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
11910478 AGTCACTACT
*
11910488 ATTACGGACCTAATAGAAAGCG
1 ATTACAGACCTAATAGAAAGCG
11910510 ATTACAGACCTAATAGAAAGCG
1 ATTACAGACCTAATAGAAAGCG
11910532 A
1 A
11910533 GGTGGTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (22 bp):
ATTACAGACCTAATAGAAAGCG
Found at i:11911452 original size:14 final size:15
Alignment explanation
Indices: 11911422--11911455 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
11911412 TTGACATGGC
*
11911422 AATTTGGAACCTTTG
1 AATTTGGAACATTTG
11911437 AATTTGGAA-ATTTG
1 AATTTGGAACATTTG
11911451 AATTT
1 AATTT
11911456 TAAAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (15 bp):
AATTTGGAACATTTG
Found at i:11915272 original size:33 final size:34
Alignment explanation
Indices: 11915224--11915339 Score: 147
Period size: 33 Copynumber: 3.6 Consensus size: 34
11915214 TCTTTTTTAA
11915224 AAATTAATTAAATTAGGGTTTATAGGTTTTAAAT
1 AAATTAATTAAATTAGGGTTTATAGGTTTTAAAT
*
11915258 AAATTAA-TAAATTAGGGTTTATGGGTTTTAAAT
1 AAATTAATTAAATTAGGGTTTATAGGTTTTAAAT
* *
11915291 AAATAAATTAAATTAGGATTTA-AGG--TTAAAT
1 AAATTAATTAAATTAGGGTTTATAGGTTTTAAAT
*
11915322 ---TTAATCAAATTAGGGTTT
1 AAATTAATTAAATTAGGGTTT
11915340 TTAAAATAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
28 15 0.20
31 6 0.08
33 33 0.45
34 20 0.27
ACGTcount: A:0.42, C:0.01, G:0.16, T:0.41
Consensus pattern (34 bp):
AAATTAATTAAATTAGGGTTTATAGGTTTTAAAT
Found at i:11916119 original size:25 final size:23
Alignment explanation
Indices: 11916062--11916119 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 23
11916052 AAGAATTTCT
11916062 ATTTTATTAAAAATATAAAAATA
1 ATTTTATTAAAAATATAAAAATA
11916085 ATTTACTATT-AAAATATTAAAAAATA
1 ATTT--TATTAAAAATA-T-AAAAATA
11916111 ACTTTTATT
1 A-TTTTATT
11916120 TTATTAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
23 4 0.13
24 6 0.20
25 9 0.30
26 8 0.27
27 3 0.10
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTATTAAAAATATAAAAATA
Found at i:11916568 original size:18 final size:18
Alignment explanation
Indices: 11916547--11916582 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
11916537 AAAAGGAAAT
*
11916547 ATATAAGGGTTAGGATAC
1 ATATAAGGGCTAGGATAC
11916565 ATATAAGGGCTAGGATAC
1 ATATAAGGGCTAGGATAC
11916583 GCACCTGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.28, T:0.25
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAC
Found at i:11919855 original size:15 final size:15
Alignment explanation
Indices: 11919835--11919886 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
11919825 ACTACAAAAC
11919835 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
11919850 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
11919869 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
11919884 ATT
1 ATT
11919887 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:11922633 original size:22 final size:22
Alignment explanation
Indices: 11922593--11922648 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
11922583 AATAAAATTG
*
11922593 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
11922613 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
11922635 TATTAATAATTTAT
1 AAATAATAAATTAT
11922649 TATATGACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.30
21 2 0.07
22 19 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:11925281 original size:16 final size:16
Alignment explanation
Indices: 11925262--11925348 Score: 67
Period size: 16 Copynumber: 5.7 Consensus size: 16
11925252 TTTCTTCTTT
11925262 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
*
11925278 TTTTTTTTGGGGTAGG
1 TTTTTTTTGGGTTAGG
*
11925294 TTTTTCTTT---TT--C
1 TTTTT-TTTGGGTTAGG
*** * *
11925306 TTTTTTTTTTCTTTGT
1 TTTTTTTTGGGTTAGG
11925322 TTTTTTTTGGGTTAGG
1 TTTTTTTTGGGTTAGG
11925338 TTTTTTTTGGG
1 TTTTTTTTGGG
11925349 GGGCTTAATG
Statistics
Matches: 56, Mismatches: 9, Indels: 12
0.73 0.12 0.16
Matches are distributed among these distances:
11 3 0.05
12 5 0.09
14 3 0.05
16 42 0.75
17 3 0.05
ACGTcount: A:0.03, C:0.03, G:0.23, T:0.70
Consensus pattern (16 bp):
TTTTTTTTGGGTTAGG
Found at i:11925298 original size:44 final size:44
Alignment explanation
Indices: 11925250--11925342 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
11925240 AGGTTTTTCT
*
11925250 TTTTTCTTCTTT-TTTTTTTTGGGTTAGGTTTTTTTTGGGGTAGG
1 TTTTTCTT-TTTCTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGG
** * * *
11925294 TTTTTCTTTTTCTTTTTTTTTTCTTTGTTTTTTTTTGGGTTAGG
1 TTTTTCTTTTTCTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGG
11925338 TTTTT
1 TTTTT
11925343 TTTGGGGGGC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 3 0.07
44 39 0.93
ACGTcount: A:0.03, C:0.05, G:0.18, T:0.73
Consensus pattern (44 bp):
TTTTTCTTTTTCTTTTTTTTGGCTTAGGTTTTTTTTGGGGTAGG
Found at i:11925314 original size:17 final size:17
Alignment explanation
Indices: 11925294--11925329 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
11925284 TTGGGGTAGG
11925294 TTTTTCTTT-TTCTTTTT
1 TTTTTCTTTGTT-TTTTT
11925311 TTTTTCTTTGTTTTTTT
1 TTTTTCTTTGTTTTTTT
11925328 TT
1 TT
11925330 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (17 bp):
TTTTTCTTTGTTTTTTT
Found at i:11925324 original size:12 final size:11
Alignment explanation
Indices: 11925294--11925327 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
11925284 TTGGGGTAGG
11925294 TTTTTCTTTTTC
1 TTTTT-TTTTTC
11925306 TTTTTTTTTTC
1 TTTTTTTTTTC
11925317 TTTGTTTTTTT
1 TTT-TTTTTTT
11925328 TTGGGTTAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:11926082 original size:88 final size:83
Alignment explanation
Indices: 11925975--11926551 Score: 281
Period size: 88 Copynumber: 7.0 Consensus size: 83
11925965 AACAGACATT
** * *
11925975 AAAAACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
11926040 TTGATTTTTTGAAACTTAACTTG
65 TTGATTTTTTGAAA---AAC-TG
* * * ** *
11926063 AAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGGAGGTTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
*
11926127 GTTGA-TTTTTGAAAAACAG
64 GTTGATTTTTTGAAAAACTG
* * * * ** *** *
11926146 AAATTAAAAGA--CT-CAACTCAACTCTCGCA-GAAATTAAAAAGCTCAACTCACCTCTCGCAAT
1 AAA--AACAGATTTTGAAAAT--AC-CTCGCACGTGA-GCCAAGGCTCAACTCACCTCTCGCAAT
*
11926207 ATGAGTCGAATTTTTTTG--AAA---
60 ATGAGTTG-A-TTTTTTGAAAAACTG
** * *
11926228 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
*
11926293 TTGA-TTTTTGAAAACAGAATTTG
65 TTGATTTTTTG--AA-A-AA-CTG
* * * * * *
11926316 AAAAACAGATTTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGATTTTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
11926381 TTGATTTTTTTGAAAAA-T-
65 TTGA-TTTTTTGAAAAACTG
* *** *** * *
11926399 --ATA-A-ATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
11926459 GTTGATTTTTTTG--AAA--G
64 GTTGA-TTTTTTGAAAAACTG
* * * * * * *
11926476 ATAGA-A-A--TTGAAAATAGCTCAGCGCATGAGCCAAGGGTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGATTTTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
11926537 TTGATTTTTTGAAAA
65 TTGATTTTTTGAAAA
11926552 CAGAAATTGA
Statistics
Matches: 380, Mismatches: 71, Indels: 86
0.71 0.13 0.16
Matches are distributed among these distances:
76 9 0.02
77 47 0.12
78 8 0.02
79 58 0.15
80 12 0.03
81 35 0.09
82 9 0.02
83 11 0.03
84 37 0.10
85 12 0.03
86 2 0.01
87 19 0.05
88 115 0.30
90 6 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (83 bp):
AAAAACAGATTTTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACTG
Found at i:11926179 original size:30 final size:30
Alignment explanation
Indices: 11926143--11926204 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
11926133 TTTTGAAAAA
11926143 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
11926173 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
11926203 CA
1 CA
11926205 ATATGAGTCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:11926322 original size:14 final size:14
Alignment explanation
Indices: 11926299--11926333 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
11926289 TGAGTTGATT
11926299 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
11926312 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
11926326 TTTGAAAA
1 TTTGAAAA
11926334 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:11926634 original size:72 final size:73
Alignment explanation
Indices: 11926351--11926691 Score: 380
Period size: 72 Copynumber: 4.5 Consensus size: 73
11926341 ACATGTAACC
* * * *
11926351 CGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATAC
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTG-AAAACAGAAATTG--AAAATAC
* *
11926416 CTCAGTGTGTGAT
62 CTCAGCGTGT-CT
* * *
11926429 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGATAGAAATTGAAAATAGC
1 C-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAA-ACAGAAATTGAAAATACC
*
11926494 TCAGCGCATGAGC-
63 TCAGCG--TG-TCT
* * *
11926507 CAAGGGTCAACTCACCTCTCGCAATATAAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
11926572 ACGTGTCT
66 GCGTGTCT
* ** * * *
11926580 TGAGGCTCAACTCATTTCTCACAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCA
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
*
11926644 GCGTGTCC
66 GCGTGTCT
11926652 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
11926692 TTTTTTTTTG
Statistics
Matches: 224, Mismatches: 32, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
72 65 0.29
73 33 0.15
75 21 0.09
76 10 0.04
77 41 0.18
78 5 0.02
79 49 0.22
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30
Consensus pattern (73 bp):
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAATACCTCA
GCGTGTCT
Found at i:11926837 original size:171 final size:167
Alignment explanation
Indices: 11926548--11927024 Score: 682
Period size: 171 Copynumber: 2.9 Consensus size: 167
11926538 TGATTTTTTG
* * * ** * *
11926548 AAAACAGAAATTGAAAATACCTCAACGTGT-CT-TGAGGCTCAACTCATTTCTCACAATATGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
* * *
11926611 TGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTG-ACACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* *
11926675 ATATGAGTTGATTTTTTTTTTTTTTTGAAATGCAGAAATTGA
130 ATATGAGTTGA----TTTTTTTTTTTGAAAGGCAAAAATTGA
*
11926717 AAAATGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
11926782 TGACTTTTTTGACA-AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 TGA-TTTTTTGACACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
11926846 ATATGAGTTGA----TTTTTTTGAAAGGCAAAAATTGA
130 ATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
* * * *
11926880 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGT
1 AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
11926945 TGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 TGATTTTTTGAC-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
11927010 ATATGAGTTGATTTT
130 ATATGAGTTGATTTT
11927025 GAAAAAGTAG
Statistics
Matches: 280, Mismatches: 18, Indels: 21
0.88 0.06 0.07
Matches are distributed among these distances:
162 9 0.03
163 85 0.30
164 61 0.22
169 27 0.10
170 1 0.00
171 90 0.32
172 2 0.01
173 5 0.02
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.30
Consensus pattern (167 bp):
AAAACGGAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGT
TGATTTTTTGACACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTGA
Found at i:11926842 original size:72 final size:73
Alignment explanation
Indices: 11926723--11926865 Score: 218
Period size: 72 Copynumber: 2.0 Consensus size: 73
11926713 TTGAAAAATG
*
11926723 GAAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
1 GAAATTGAAAATACCTCGACGTGT-ACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
11926788 TTTTGACAA
65 TTTTGACAA
* * *
11926797 GAAATTGAAATTACCTC-AGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 GAAATTGAAAATACCTCGA-CGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTT
11926860 TTTTGA
65 TTTTGA
11926866 AAGGCAAAAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
72 42 0.66
73 1 0.02
74 21 0.33
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (73 bp):
GAAATTGAAAATACCTCGACGTGTACCTGAGGCTCAACTCACCTCTCGCAATACGAGTTGACTTT
TTTGACAA
Found at i:11926967 original size:89 final size:88
Alignment explanation
Indices: 11926797--11926970 Score: 244
Period size: 91 Copynumber: 2.0 Consensus size: 88
11926787 TTTTTGACAA
* * *
11926797 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
11926862 TTGAAAGGCAAAAATTGAAAAACG
66 TTGAAA-GCAAAAATTGAAAAACG
* *
11926886 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGA-TT
1 GAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
*
11926950 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAAAAATTGAAA
11926971 TTACCTCAGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
89 33 0.43
90 8 0.11
91 35 0.46
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.26
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTTT
TTGAAAGCAAAAATTGAAAAACG
Found at i:11927010 original size:73 final size:74
Alignment explanation
Indices: 11926886--11927024 Score: 217
Period size: 73 Copynumber: 1.9 Consensus size: 74
11926876 TTGAAAAACG
* *
11926886 GAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAATACGAGTTGATTT
1 GAAATTGAAAATACCTCAGCGTGT-ACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTT
11926951 TTTGACAACA
65 TTTGACAACA
* * *
11926961 GAAATTGAAATTACCTCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
11927025 GAAAAAGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
73 37 0.63
75 22 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (74 bp):
GAAATTGAAAATACCTCAGCGTGTACCTGAGGCTCAACTCACCACTCGCAATACGAGTTGATTTT
TTGACAACA
Found at i:11927213 original size:212 final size:197
Alignment explanation
Indices: 11926873--11929827 Score: 861
Period size: 194 Copynumber: 14.8 Consensus size: 197
11926863 TGAAAGGCAA
* * * *
11926873 AAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCACTCGCAA
1 AAATTG-AAAACAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAA
* *** * *
11926938 TACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
63 TATGAGTTGATTTTAAAAC-ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
* *
11927003 TCTCGCAATATGAGTTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAAC-CTACATCTCGCAAT
127 TCTAGCAATATGAGTTGATTTTGAAAAA-CA-AAATTAAAAGGCTT-AACTC-ACATCTCGCAAT
11927066 ATGAGTTGATTCTTGAACAACGT
188 ATGA---G-----T---CAA--T
11927089 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
** * *
11927154 GAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTA
66 GAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTA
*
11927219 GCAATATGAGTTGATTTTGAAAAACAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCA
131 GCAATATGAGTTGATTTTGAAAAACAAAATTAAAAGGCTTAACTCACATCTCGCAATATGAGTCA
11927284 AT
196 AT
* * * * *
11927286 ---TT-AAAACATAAACTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
11927346 GAGTTGATTTTGAAA-ACAAAAATT-AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTT
66 GAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTA
** * * * *
11927409 GCAATATGAGTTGA--TT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCT--CAA
131 GCAATATGAGTTGATTTTGAAAA-AC-AAAATT-AAAA-GGCTTAAC-T--CAC-A-TCTCGCAA
* * * * *
11927469 -CTCACCTCTAG
187 TATGA-GTCAAT
* *** ** * *** * ** *
11927480 CAATATG--AGTTGATTTTGAAAA-A-C-AAAAATTA--AAAGGCTTAACTCACCTCTCGCAATA
1 AAAT-TGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* * * * *
11927538 TGAG-TCAATTT-AAA-AC------TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCT
65 TGAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * ** *
11927594 CGCAATATGAGTTGATTTTG-AAAAC-AAATTGAACAGAAATTAAAAATACCTCAACGTGTCTGA
130 AGCAATATGAGTTGATTTTGAAAAACAAAATT-AAAAG-GCTT----A-A-CTC-AC--ATCT--
* **
11927657 GGCTCAACTCACTCTCG-CAAT
182 --CGCAA-T-A-T-GAGTCAAT
* * * * *
11927678 ATGAGTTGATTAAAACATAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTA
1 A--AATTG---AAAAC--AGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTC
11927743 GCAATATGAGTTGATTTTGAAAA-ACAAAAATT---AA-A----A--G-G--CT-----T-AACT
59 GCAATATGAGTTGATTTT-AAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACT
* ** ** ** *
11927788 CACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTC
123 CACCTCTAGCAATATGAGTTGATTT-TGA-A-AAAC--AAAAT---T-A--------AAAGGCTT
* **
11927853 AACTCACTTCTCGCAATATGAGTTGAT
171 AACTCACATCTCGCAATATGAGTCAAT
* * * * * * *
11927880 --TTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
11927943 GAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTA
66 GAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTA
*
11928006 GCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTC
131 GCAATATGAGTTGATTTTGAAAAAC-AAAATT----A-A----AA-G-G-CTT-A-ACTC-A--C
11928070 ATCTCTTGCAATATGAGT---T
178 ATCTC--GCAATATGAGTCAAT
* * * * * *
11928089 -GATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
11928153 TGAGTTGATTTTGAAAAAACAAAAATT---AA-A----A--G-G--CT-----T-AACTCACCTC
65 TGAGTTGATTTT-AAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * * * * *** * *
11928199 TCGCAATATGAG-TCAATTTAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCT
129 TAGCAATATGAGTTGATTTTGAAA--AACAA-A----A---T-T-AAAAGGCTTAACTCACATCT
11928263 CGCAATATGAGTTGATTTTTGAACAACGT
182 CGCAATATGA---G-----T---CAA--T
11928292 AAATTGAAAACAGAAATTTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAACAGAAA-TTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
** * *
11928357 TGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT
65 TGAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
11928422 AGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGT
130 AGCAATATGAGTTGATTTTGAAAAAC-AAAATTAAAAGGCTTAACTCACATCTCGCAATATGAGT
11928487 CAAT
194 CAAT
* * * * * *
11928491 ---TT-AAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * *
11928552 GAGTTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCT
66 GAG-TTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
11928616 CGCAATATGAGTTGA--TT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAAC
130 AGCAATATGAGTTGATTTTGAAAA-AC-AAAATT----A-A----A----------AGGCTTAAC
* * **
11928678 TCACCTCTAGCAATATGAGTTGAT
174 TCACATCTCGCAATATGAGTCAAT
* * * * * * * *
11928702 --TTTGAAAACAAAAATTAAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTTGCAATA
1 AAATTGAAAACAGAAATT-GAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* *
11928765 TGAGTTGA--TTAAAACACAAAAATTG-AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT
65 TGAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
11928827 AGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGT
130 AGCAATATGAGTTGATTTTGAAAAAC-AAAATTAAAAGGCTTAACTCACATCTCGCAATATGAGT
11928892 CAAT
194 CAAT
* * * *
11928896 ---TT-AAAAC------TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* *
11928951 GAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGC
66 GAGTTGA-TTTT-AA-AAC-----------ACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGC
* ** ** * *
11929016 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAAAATTGAAAATACCTCAGCGTG
117 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA-AC--AAAATT-AAAA-GGCTTAAC-T-
* * * * * * *
11929080 CCCCGAGGCT--CAA-CTCACCTCTAG
175 -CAC-A-TCTCGCAATATGA-GTCAAT
* *** ** * *** * ** *
11929104 CAATATG--AGTTGATTTTGAAAA-A-C-AAAAATTA--AAAGGCTTAACTCACCTCTCGCAATA
1 AAAT-TGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* * * * * * *
11929162 TGAG-TCAATTT-AAA-ACATAAACTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCT
65 TGAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* *
11929223 CGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACT
130 AGCAATATGAGTTGATTTTGAAAAAC-AAAATT----A-A----AA-G-G-CTT-A-ACTC-A--
11929287 CATCTCTCGCAATATGAGT---T
177 CA--TCTCGCAATATGAGTCAAT
* * * * * *
11929307 -GATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
*
11929371 TGAGTTGATTTTGAAAA-ACAAAAATT--AAA-A----A--G-G--CT-----T-AACTCACCTT
65 TGAGTTGATTTT-AAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* * * * * *** * *
11929417 TCGCAATATGAG-TCAATTTAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCT
129 TAGCAATATGAGTTGATTTTGAAA--AACAA-A----A---T-T-AAAAGGCTTAACTCACATCT
**
11929481 CGCAATATGAGTTGAT
182 CGCAATATGAGTCAAT
* * * * * *
11929497 --TTTGAAAACA-ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATA
1 AAATTGAAAACAGA-AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
* *
11929559 TGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCT
65 TGAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
*
11929622 AGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGT
130 AGCAATATGAGTTGATTTTGAAAAAC-AAAATTAAAAGGCTTAACTCACATCTCGCAATATGAGT
11929687 CAAT
194 CAAT
* * * * *
11929691 ---TT-AAAAC------TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTTTCGCAATAT
1 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
* * * * * * *
11929746 GAGTTGATTTTGAAA-ACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTC
66 GAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTA
11929810 GCAATATGAGTTGATTTT
131 GCAATATGAGTTGATTTT
11929828 CCTTGAAAAG
Statistics
Matches: 2067, Mismatches: 359, Indels: 655
0.67 0.12 0.21
Matches are distributed among these distances:
185 63 0.03
186 108 0.05
187 90 0.04
188 74 0.04
189 24 0.01
190 61 0.03
191 36 0.02
192 79 0.04
193 117 0.06
194 228 0.11
195 102 0.05
196 17 0.01
197 18 0.01
198 7 0.00
199 9 0.00
200 4 0.00
201 51 0.02
202 66 0.03
203 39 0.02
204 110 0.05
205 33 0.02
206 22 0.01
207 16 0.01
208 16 0.01
209 37 0.02
210 80 0.04
211 177 0.09
212 161 0.08
213 71 0.03
214 70 0.03
215 25 0.01
216 9 0.00
217 8 0.00
218 1 0.00
219 2 0.00
220 1 0.00
221 4 0.00
222 23 0.01
223 8 0.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (197 bp):
AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTAAAACACAAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTA
GCAATATGAGTTGATTTTGAAAAACAAAATTAAAAGGCTTAACTCACATCTCGCAATATGAGTCA
AT
Found at i:11927223 original size:72 final size:71
Alignment explanation
Indices: 11927089--11927247 Score: 237
Period size: 72 Copynumber: 2.2 Consensus size: 71
11927079 TGAACAACGT
* * * *
11927089 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
11927154 GAGTTG
66 GAGTTG
*
11927160 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
11927225 TGAGTTG
65 TGAGTTG
**
11927232 ATTTTGAAAAACAAAA
1 AAATT-AAAAACAAAA
11927248 TTAAAAGGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
71 8 0.10
72 67 0.85
73 4 0.05
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (71 bp):
AAATTAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:11927400 original size:70 final size:69
Alignment explanation
Indices: 11927253--11927514 Score: 325
Period size: 70 Copynumber: 3.8 Consensus size: 69
11927243 CAAAATTAAA
* * * * *
11927253 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACA-AAAATTAAAATACCTCAGCGT
11927316 GCCCG
65 GCCCG
* *
11927321 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAATACCTCAACGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAATACCTCAGCGTG
**
11927386 TCTTG
66 -CCCG
* * *
11927391 AGGCTCAACTCATCTCTTGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATT-AAAATACCTCAGCG
11927454 TGCCCCG
64 TG-CCCG
*
11927461 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
11927515 GGCTTAACTC
Statistics
Matches: 166, Mismatches: 20, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
68 31 0.19
69 33 0.20
70 84 0.51
71 4 0.02
72 11 0.07
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAATACCTCAGCGTG
CCCG
Found at i:11927687 original size:78 final size:73
Alignment explanation
Indices: 11927549--11927770 Score: 265
Period size: 80 Copynumber: 3.0 Consensus size: 73
11927539 GAGTCAATTT
*
11927549 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGT-CCGAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTG
11927614 AAAACAAATTGAA
64 AAAACAAA-T--A
* *
11927627 CAGAAATTAAAAATACCTCAACGTGTCTGAGGCTCAACTCACTCTCGCAATATGAGTTGA--TT-
1 -A-AAATTAAAAATACCTCAGCGTGTCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTG
11927689 AAAAC--ATA
64 AAAACAAATA
* * *
11927697 AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTG-TCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTG
11927762 AAAAACAAA
64 -AAAACAAA
11927771 AATTAAAAGG
Statistics
Matches: 126, Mismatches: 8, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
68 20 0.16
69 15 0.12
70 19 0.15
72 3 0.02
73 1 0.01
74 5 0.04
75 5 0.04
76 3 0.02
78 18 0.14
79 16 0.13
80 21 0.17
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.25
Consensus pattern (73 bp):
AAAATTAAAAATACCTCAGCGTGTCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTGAA
AACAAATA
Found at i:11927702 original size:79 final size:80
Alignment explanation
Indices: 11927554--11927774 Score: 232
Period size: 78 Copynumber: 2.9 Consensus size: 80
11927544 AATTTAAAAC
* ** *
11927554 TAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAC
1 TAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTAAAAAAA
11927619 AAATTGAACAGAAAT
66 AAATTGAACAGAAAT
*
11927634 TAAAAATACCTCAACGTGT-CTGAGGCTCAACTCAC-TCTCGCAATATGAGTTGA-TT----AAA
1 TAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTAAAAAAA
*
11927692 ACA-T--A-A-AAAT
66 AAATTGAACAGAAAT
* * * * *
11927702 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
1 TAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTT-AAAAA
11927767 CAAAAATT
64 -AAAAATT
11927775 AAAAGGCTTA
Statistics
Matches: 120, Mismatches: 10, Indels: 23
0.78 0.07 0.15
Matches are distributed among these distances:
68 20 0.17
69 16 0.13
70 18 0.15
72 3 0.03
73 4 0.03
77 3 0.03
78 22 0.18
79 16 0.13
80 18 0.15
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (80 bp):
TAAAAATACCTCAACGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTAAAAAAA
AAATTGAACAGAAAT
Found at i:11927758 original size:70 final size:68
Alignment explanation
Indices: 11927630--11927758 Score: 195
Period size: 68 Copynumber: 1.9 Consensus size: 68
11927620 AATTGAACAG
* * *
11927630 AAATTAAAAATACCTCAACGTGTCTGAGGCTCAACTCACTCTCGCAATATGAGTTGATTAAAACA
1 AAATTAAAAATACCTCAACGTGCCCGAGGCTCAACTCACTCTAGCAATATGAGTTGATTAAAACA
11927695 TAA
66 TAA
* *
11927698 AAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT
1 AAATTAAAAATACCTCAACGTG-CCCGAGGCTCAACTCA-CTCTAGCAATATGAGTTGATT
11927759 TTGAAAAACA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
68 20 0.37
69 14 0.26
70 20 0.37
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.26
Consensus pattern (68 bp):
AAATTAAAAATACCTCAACGTGCCCGAGGCTCAACTCACTCTAGCAATATGAGTTGATTAAAACA
TAA
Found at i:11927873 original size:122 final size:120
Alignment explanation
Indices: 11927656--11928281 Score: 465
Period size: 141 Copynumber: 4.9 Consensus size: 120
11927646 AACGTGTCTG
** * *
11927656 AGGCTCAACTCACTCTCGCAATATGAGTTGATTAAAACATAAAAATTGAAAATACCTCAGCGTGC
1 AGGCTCAACTCACTCTCGCAATATGAGTCAATTAAAACAT-AAAACTAAAAATACCTCAGCGTGC
11927721 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
65 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
*
11927778 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACAT-AAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCA-CTCTCGCAATATGAGTCAA-TTAAAACATAAAACTAAAAATACCTCAGCGTG
* *
11927842 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAA
64 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATT-AAA
** * * * * ** * *
11927900 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC---TC---A--CTC-TCGCA-ATAT-G--A-----GTCAATTAAAACA-TAAAAC
*
11927965 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAC
46 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAC
11928030 AAAAATTAAAA
111 AAAAATT-AAA
** * * * * ** * *
11928041 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC---TC---A--CTC-TCGCA-AT-ATG--A-----GTCAATTAAAACA-TAAAAC
*
11928106 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA
46 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG--AAA
11928171 ACAAAAATTAAA
109 ACAAAAATTAAA
* *
11928183 AGGCTTAACTCACCTCTCGCAATATGAGTCAATT------TAAAACTAAAAATACCTCAGCGTGT
1 AGGCTCAACTCA-CTCTCGCAATATGAGTCAATTAAAACATAAAACTAAAAATACCTCAGCGTGC
* *
11928242 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT
65 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTT
11928282 TGAACAACGT
Statistics
Matches: 439, Mismatches: 39, Indels: 57
0.82 0.07 0.11
Matches are distributed among these distances:
117 59 0.13
121 12 0.03
122 75 0.17
123 22 0.05
124 14 0.03
126 2 0.00
129 2 0.00
130 3 0.01
131 5 0.01
132 3 0.01
133 4 0.01
134 3 0.01
135 2 0.00
138 2 0.00
139 8 0.02
140 3 0.01
141 203 0.46
142 5 0.01
143 12 0.03
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (120 bp):
AGGCTCAACTCACTCTCGCAATATGAGTCAATTAAAACATAAAACTAAAAATACCTCAGCGTGCC
CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:11927921 original size:71 final size:71
Alignment explanation
Indices: 11927778--11928183 Score: 527
Period size: 70 Copynumber: 5.7 Consensus size: 71
11927768 AAAAATTAAA
* * * * *
11927778 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
11927841 GCCCCG
66 GCCCCG
* *
11927847 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
11927912 GTCTTG
66 GCCCCG
* * *
11927918 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
11927981 TGCCCCG
65 TGCCCCG
* *
11927988 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
11928053 GTCTTG
66 GCCCCG
* * * *
11928059 AGGCTCAACTCATCTCTTGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
11928122 TGCCCCG
65 TGCCCCG
*
11928129 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG--AAAACAAAAATTAAAA
11928184 GGCTTAACTC
Statistics
Matches: 289, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
69 36 0.12
70 117 0.40
71 114 0.39
72 7 0.02
73 12 0.04
74 3 0.01
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:11927999 original size:70 final size:69
Alignment explanation
Indices: 11927778--11928183 Score: 506
Period size: 71 Copynumber: 5.7 Consensus size: 69
11927768 AAAAATTAAA
* ** * * *
11927778 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
11927843 CCCG
66 CCCG
* * *
11927847 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
11927912 GTCTTG
64 GCCCCG
* *
11927918 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
11927983 CCCCG
65 CCCCG
* * *
11927988 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
11928053 GTCTTG
64 GCCCCG
* * *
11928059 AGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
11928124 CCCCG
65 CCCCG
*
11928129 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT--AAAAACAAAAATTAAAA
11928184 GGCTTAACTC
Statistics
Matches: 289, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
69 38 0.13
70 112 0.39
71 116 0.40
72 7 0.02
73 12 0.04
74 4 0.01
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:11928031 original size:141 final size:141
Alignment explanation
Indices: 11927778--11928183 Score: 688
Period size: 141 Copynumber: 2.9 Consensus size: 141
11927768 AAAAATTAAA
* * ** * * * *
11927778 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAA-ACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
* *
11927842 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
11927907 AACGTGTCTTG
131 AACGTGTCTTG
11927918 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11927983 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
11928048 AACGTGTCTTG
131 AACGTGTCTTG
*
11928059 AGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11928124 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAACAAAAATTAAAA
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG--AAAACAAAAATTAAAA
11928184 GGCTTAACTC
Statistics
Matches: 252, Mismatches: 11, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
140 33 0.13
141 203 0.81
143 16 0.06
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (141 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
AACGTGTCTTG
Found at i:11928409 original size:72 final size:73
Alignment explanation
Indices: 11928292--11928458 Score: 243
Period size: 72 Copynumber: 2.3 Consensus size: 73
11928282 TGAACAACGT
* * * *
11928292 AAATTGAAAACA-GAAATTTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAAT
1 AAATTGAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAAT
11928356 ATGAGTTG
66 ATGAGTTG
*
11928364 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
1 AAATTGAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAAT
11928428 ATGAGTTG
66 ATGAGTTG
**
11928436 ATTTTGAAAA-ACAAAAATT-AAAA
1 AAATTGAAAACACAAAAATTGAAAA
11928459 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
71 10 0.12
72 72 0.84
73 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (73 bp):
AAATTGAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTG
Found at i:11928553 original size:122 final size:125
Alignment explanation
Indices: 11928333--11928961 Score: 435
Period size: 141 Copynumber: 4.9 Consensus size: 125
11928323 GCGTGACCTG
* *
11928333 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
11928398 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG-TTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTTGATTTTG-AAAACAAAAATTAAA
* * * *
11928458 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
11928520 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTTGATTTTGAAAACAAAAATTAAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTTGATTTTGAAAACAAAAATT-AAA
** * * * * * * * *
11928581 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGT-TGA---AATTAAAACACAAAAAC
*
11928646 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG-TTGATTTTGAAAA
50 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTTGATTTTGAAAA
11928710 CAAAAATTAAAAA
115 CAAAAATT--AAA
** ** * ** * *** * **** * *
11928723 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAAT
1 A-GGCTCAAC-TCACCT--CTCGCAA-T-ATGAGTTG-AA-ATTAAAACA-CAAAA-AC--TAA-
11928788 TGAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAG-TTGATTTTGAAAAA
53 --AAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTTGATTTTG-AAAA
11928852 CAAAAATTAAA
115 CAAAAATTAAA
* * *
11928863 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATT-------TAAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* * *
11928919 TGTCCCGAGGCTCAACTCACTTCTCGCAATATGAG-TTGATTTT
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTTGATTTT
11928962 TGAACAACGT
Statistics
Matches: 403, Mismatches: 65, Indels: 81
0.73 0.12 0.15
Matches are distributed among these distances:
116 53 0.13
119 2 0.00
121 2 0.00
122 69 0.17
123 20 0.05
124 6 0.01
125 27 0.07
127 2 0.00
130 3 0.01
131 4 0.01
132 3 0.01
133 3 0.01
134 7 0.02
135 8 0.02
136 8 0.02
137 6 0.01
138 5 0.01
139 5 0.01
140 6 0.01
141 84 0.21
142 80 0.20
ACGTcount: A:0.37, C:0.23, G:0.14, T:0.26
Consensus pattern (125 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTTGATTTTGAAAACAAAAATTAAA
Found at i:11928602 original size:72 final size:71
Alignment explanation
Indices: 11928458--11928863 Score: 511
Period size: 72 Copynumber: 5.7 Consensus size: 71
11928448 AAAAATTAAA
* * * * *
11928458 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
11928521 GCCCCG
66 GCCCCG
* *
11928527 AGGCTCAACTCACTTCTCGCAATATGAGTTTGATTTTGAAAACAAAAATTAAAAATACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAG-TTGATTTTGAAAACAAAAATTAAAAATACCTCAGCG
* **
11928592 TGTCTTG
65 TGCCCCG
* * *
11928599 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
11928662 TGCCCCG
65 TGCCCCG
* *
11928669 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAAATACCTCAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATT-AAAAATACCTCAGCG
* **
11928734 TGTCTTG
65 TGCCCCG
* * * *
11928741 AGGCTCAACTCATCTCTTGCAATATGAGTTGA--TTAAAACACAAAAATT-GAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
11928803 TGCCCCG
65 TGCCCCG
*
11928810 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
11928864 GGCTTAACTC
Statistics
Matches: 287, Mismatches: 38, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
69 77 0.27
70 61 0.21
71 38 0.13
72 111 0.39
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:11928725 original size:142 final size:142
Alignment explanation
Indices: 11928458--11928863 Score: 674
Period size: 142 Copynumber: 2.9 Consensus size: 142
11928448 AAAAATTAAA
* * ** * * * *
11928458 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAA-ACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
* *
11928522 CCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTTGATTTTGAAAACAAAAATT-AAAAATACC
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAG-TTGATTTTGAAAACAAAAATTAAAAAATACC
11928586 TCAACGTGTCTTG
130 TCAACGTGTCTTG
11928599 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11928664 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAAATACCT
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAAATACCT
11928729 CAACGTGTCTTG
131 CAACGTGTCTTG
*
11928741 AGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTG-AAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11928805 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
11928864 GGCTTAACTC
Statistics
Matches: 251, Mismatches: 11, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
141 111 0.44
142 140 0.56
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (142 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAAATACCT
CAACGTGTCTTG
Found at i:11928885 original size:680 final size:678
Alignment explanation
Indices: 11927253--11929401 Score: 4013
Period size: 680 Copynumber: 3.2 Consensus size: 678
11927243 CAAAATTAAA
* * ** * * * *
11927253 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAA-ACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
* *
11927317 -CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATT-AAAATACCTC
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
11927380 AACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
131 AACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
11927445 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
196 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
11927510 TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCC
261 TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCC
11927575 CGAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTGAA-AAC--AAATTG--AACAGAAAT
326 CGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAAT
* * *
11927634 TAAAAATACCTCAACGTG-TCTGAGGCTCAACTCA-CTCTCGCAATATGAGTTG--ATTAAAACA
391 TGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACA
*
11927695 TAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
456 CAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
11927760 TGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACT
521 TGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACT
11927825 AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACA
586 AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACA
11927890 AAAATTAAAAATACCTCAACGTGTCTTG
651 AAAATTAAAAATACCTCAACGTGTCTTG
11927918 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11927983 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
11928048 AACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
131 AACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
11928113 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAACAAAAA
196 ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAAACAAAAA
11928178 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTC
260 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTC
11928243 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAA
325 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAA
11928308 TTTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAA
390 -TTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAA
11928373 CACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
454 CACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
11928438 TTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAA
519 TTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAA
11928503 CTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTTGATTTTGAAA
584 CTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAG-TTGATTTTGAAA
11928568 ACAAAAATTAAAAATACCTCAACGTGTCTTG
648 ACAAAAATTAAAAATACCTCAACGTGTCTTG
11928599 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11928664 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAAATACCT
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATT-AAAAATACCT
11928729 CAACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTG-AAA
130 CAACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAA
11928793 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
195 TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAA
11928858 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTC
260 TTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTC
11928923 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAA
325 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAA
11928988 TTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
390 TTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC
11929053 ACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
455 AC-AAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAT
11929118 TTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAA
519 TTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAA
11929183 CTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA
584 CTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAA
11929247 CAAAAATTAAAAATACCTCAACGTGTCTTG
649 CAAAAATTAAAAATACCTCAACGTGTCTTG
11929277 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
11929342 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAA
66 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAA
11929402 GGCTTAACTC
Statistics
Matches: 1451, Mismatches: 14, Indels: 25
0.97 0.01 0.02
Matches are distributed among these distances:
665 33 0.02
666 23 0.02
667 51 0.04
668 128 0.09
669 111 0.08
670 7 0.00
671 3 0.00
673 6 0.00
675 8 0.01
676 17 0.01
677 15 0.01
678 173 0.12
679 111 0.08
680 475 0.33
681 219 0.15
682 71 0.05
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.26
Consensus pattern (678 bp):
AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTC
AACGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTAAAACACAAAAATTGAAAAT
ACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAAT
TAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGTCC
CGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAACGTAAATTGAAAACAGAAAT
TGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACA
CAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTT
TGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACT
AAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACA
AAAATTAAAAATACCTCAACGTGTCTTG
Found at i:11929062 original size:86 final size:86
Alignment explanation
Indices: 11928905--11929067 Score: 229
Period size: 86 Copynumber: 1.9 Consensus size: 86
11928895 TTTAAAACTA
* * ** **
11928905 AAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAACAAC
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACAAC
**
11928970 GTAAATTGAAAACAGAAATTG
66 AAAAATTGAAAACAGAAATTG
*
11928991 AAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC-AC
1 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACAAC
11929055 AAAAAATTGAAAA
66 -AAAAATTGAAAA
11929068 TACCTCAGCG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
85 2 0.03
86 65 0.97
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (86 bp):
AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACAAC
AAAAATTGAAAACAGAAATTG
Found at i:11929296 original size:71 final size:70
Alignment explanation
Indices: 11929138--11929401 Score: 347
Period size: 70 Copynumber: 3.8 Consensus size: 70
11929128 AAAAATTAAA
* * * * *
11929138 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
11929201 GCCCG
66 GCCCG
* *
11929206 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
**
11929271 GTCTTG
66 G-CCCG
* * *
11929277 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
11929340 TGCCCCG
65 TG-CCCG
*
11929347 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAA
11929402 GGCTTAACTC
Statistics
Matches: 168, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
68 26 0.15
69 10 0.06
70 82 0.49
71 32 0.19
72 15 0.09
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (70 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCG
Found at i:11929374 original size:141 final size:140
Alignment explanation
Indices: 11929138--11929401 Score: 413
Period size: 141 Copynumber: 1.9 Consensus size: 140
11929128 AAAAATTAAA
* * *
11929138 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
11929203 CCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAAATACCTCA
66 CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA
11929267 ACGTGTCTTG
131 ACGTGTCTTG
* ** * *
11929277 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAA-ACAAAAACTAAAAATACCTCAGCGTG
11929342 CCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAA
65 -CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAA
11929402 GGCTTAACTC
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
139 33 0.29
140 23 0.21
141 39 0.35
142 17 0.15
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (140 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTAAAAACAAAAACTAAAAATACCTCAGCGTGC
CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAATACCTCA
ACGTGTCTTG
Found at i:11929557 original size:71 final size:70
Alignment explanation
Indices: 11929436--11929658 Score: 306
Period size: 70 Copynumber: 3.1 Consensus size: 70
11929426 GAGTCAATTT
*
11929436 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCAC-TCTCGCAATATGAGTTGATTTTG
11929501 AAAACA
65 AAAACA
* * ** *
11929507 ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTA
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTG
11929570 AAACACA
65 AAA-ACA
* * *
11929577 AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTG
11929642 AAAAACA
65 -AAAACA
11929649 AAAATTAAAA
1 AAAATTAAAA
11929659 GGCTTAACTC
Statistics
Matches: 131, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
69 5 0.04
70 55 0.42
71 53 0.40
72 15 0.11
73 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (70 bp):
AAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTGA
AAACA
Found at i:11929713 original size:257 final size:257
Alignment explanation
Indices: 11928975--11929825 Score: 1517
Period size: 258 Copynumber: 3.3 Consensus size: 257
11928965 ACAACGTAAA
* * * * *
11928975 TTGAAAACAGA-AATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACA-ACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGA
11929039 GTTGAAATTAAAACACAAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
65 GTTG--ATTAAAACAC-AAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAG
11929104 CAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCA
127 CAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCA
11929169 ATTTAAAACATAAACTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACTTCTCGCAATATGA
192 ATTT-----A-AAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGA
11929233 GTTGATT
251 GTTGATT
*
11929240 TTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
11929305 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
*
11929370 ATGAGTTGATTTTGAAAAACAAAAATTAAAAAGGCTTAACTCACCTTTCGCAATATGAGTCAATT
131 ATGAGTTGATTTTGAAAAACAAAAATT-AAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
11929435 TAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
195 TAAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
11929498 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
11929563 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
66 TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
11929628 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
131 ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
11929693 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTTTCGCAATATGAGTTGATT
196 AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
11929755 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
1 TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
11929820 TTGATT
66 TTGATT
11929826 TTCCTTGAAA
Statistics
Matches: 574, Mismatches: 9, Indels: 14
0.96 0.02 0.02
Matches are distributed among these distances:
257 191 0.33
258 195 0.34
262 79 0.14
263 47 0.08
264 1 0.00
265 61 0.11
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (257 bp):
TTGAAAACAACAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAG
TTGATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAAT
ATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
AAAACTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
Found at i:11934897 original size:12 final size:12
Alignment explanation
Indices: 11934877--11934912 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
11934867 TGGGTTATGC
*
11934877 AATGTATGAATG
1 AATGCATGAATG
11934889 AATGCATGAATG
1 AATGCATGAATG
11934901 AATGCATGAATG
1 AATGCATGAATG
11934913 TCAAATGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:11936951 original size:2 final size:2
Alignment explanation
Indices: 11936886--11936932 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
11936876 ATGGTATTTA
*
11936886 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11936928 AT AT A
1 AT AT A
11936933 ATAGTATTTA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:11937534 original size:15 final size:15
Alignment explanation
Indices: 11937516--11937550 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
11937506 TTCTTCTTTT
*
11937516 TTTTTTTGGGTTAGG
1 TTTTTTTGGGGTAGG
11937531 TTTTTTTGGGGTAGG
1 TTTTTTTGGGGTAGG
11937546 TTTTT
1 TTTTT
11937551 CTTTTTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.06, C:0.00, G:0.31, T:0.63
Consensus pattern (15 bp):
TTTTTTTGGGGTAGG
Found at i:11937565 original size:16 final size:15
Alignment explanation
Indices: 11937546--11937581 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
11937536 TTGGGGTAGG
*
11937546 TTTTTCTTTTTCTTTT
1 TTTTTCTTTGT-TTTT
11937562 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
11937577 TTTTT
1 TTTTT
11937582 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:11938544 original size:34 final size:35
Alignment explanation
Indices: 11938506--11938575 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
11938496 AAATTCCTAC
*
11938506 AAATAAAAA-AATTTTGAGTAAATTTTTTGGATAA
1 AAATAAAAATAAATTTGAGTAAATTTTTTGGATAA
*
11938540 AAATAAAAATAAATTTGAGTCAATTTTTTGGATAA
1 AAATAAAAATAAATTTGAGTAAATTTTTTGGATAA
11938575 A
1 A
11938576 TTATATTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
34 9 0.27
35 24 0.73
ACGTcount: A:0.50, C:0.01, G:0.11, T:0.37
Consensus pattern (35 bp):
AAATAAAAATAAATTTGAGTAAATTTTTTGGATAA
Found at i:11944963 original size:15 final size:16
Alignment explanation
Indices: 11944943--11944975 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
11944933 ATATATATTT
11944943 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
11944958 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
11944975 T
1 T
11944976 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:11945060 original size:22 final size:22
Alignment explanation
Indices: 11945021--11945079 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
11945011 GTTTTAAGAA
*
11945021 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
11945042 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
11945064 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
11945080 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:11945096 original size:26 final size:24
Alignment explanation
Indices: 11945050--11945109 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
11945040 ATTTGTTTTA
*
11945050 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
11945074 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
11945100 TTTTTTATTT
1 ATATTTATTT
11945110 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:11945185 original size:5 final size:5
Alignment explanation
Indices: 11945177--11945201 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
11945167 ATTTTATTTG
11945177 GGCCC GGCCC GGCCC GGCCC GGCCC
1 GGCCC GGCCC GGCCC GGCCC GGCCC
11945202 ATGATCACCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.60, G:0.40, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:11946168 original size:12 final size:13
Alignment explanation
Indices: 11946150--11946188 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
11946140 TATTTAAATG
11946150 TATTATTAATTAT
1 TATTATTAATTAT
11946163 TA-TATTTAATT-T
1 TATTA-TTAATTAT
11946175 TATTATTAATTAT
1 TATTATTAATTAT
11946188 T
1 T
11946189 TCATTTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTATTAATTAT
Found at i:11946197 original size:25 final size:25
Alignment explanation
Indices: 11946140--11946197 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
11946130 AACATAAATG
*
11946140 TATTTAAATGTATTATTAATTATTA
1 TATTTAATTGTATTATTAATTATTA
*
11946165 TATTTAATTTTATTATTAATTATT-
1 TATTTAATTGTATTATTAATTATTA
11946189 TCATTTAAT
1 T-ATTTAAT
11946198 CTTAGAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.03
25 29 0.97
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (25 bp):
TATTTAATTGTATTATTAATTATTA
Found at i:11946958 original size:7 final size:7
Alignment explanation
Indices: 11946946--11946970 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
11946936 TCAATTTAAG
11946946 AATATTC
1 AATATTC
11946953 AATATTC
1 AATATTC
11946960 AATATTC
1 AATATTC
11946967 AATA
1 AATA
11946971 AACAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (7 bp):
AATATTC
Found at i:11948065 original size:21 final size:21
Alignment explanation
Indices: 11948040--11948088 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
11948030 TTCAAAATAT
**
11948040 TAATTTTTTTTATAAATTTAA
1 TAATTTTTTAAATAAATTTAA
11948061 TAA-TTTTTAAATAAATTTAA
1 TAATTTTTTAAATAAATTTAA
*
11948081 TGATTTTT
1 TAATTTTT
11948089 AATTTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TAATTTTTTAAATAAATTTAA
Found at i:11948074 original size:20 final size:20
Alignment explanation
Indices: 11948051--11948090 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
11948041 AATTTTTTTT
11948051 ATAAATTTAATAATTTTTAA
1 ATAAATTTAATAATTTTTAA
*
11948071 ATAAATTTAATGATTTTTAA
1 ATAAATTTAATAATTTTTAA
11948091 TTTTTAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATAAATTTAATAATTTTTAA
Found at i:11948096 original size:17 final size:18
Alignment explanation
Indices: 11948076--11948115 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
11948066 TTTAAATAAA
11948076 TTTAATGATTTTT-AATT
1 TTTAATGATTTTTGAATT
**
11948093 TTTAATTTTTTTTGAATT
1 TTTAATGATTTTTGAATT
11948111 TTTAA
1 TTTAA
11948116 AATTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTAATGATTTTTGAATT
Found at i:11949988 original size:14 final size:14
Alignment explanation
Indices: 11949950--11949988 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
11949940 TTTCAAATTC
11949950 TTTTATTT-TATTT
1 TTTTATTTATATTT
* *
11949963 TTTAATTAATATTT
1 TTTTATTTATATTT
11949977 TTTTATTTATAT
1 TTTTATTTATAT
11949989 AAATAATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTTATTTATATTT
Found at i:11965957 original size:21 final size:20
Alignment explanation
Indices: 11965915--11965958 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
11965905 AATAAATATA
***
11965915 TTTACGGGCCTTAAACCGAG
1 TTTACGGGCCTTAAAAATAG
11965935 TTTACGAGGCCTTAAAAATAG
1 TTTACG-GGCCTTAAAAATAG
11965956 TTT
1 TTT
11965959 GGGAACAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (20 bp):
TTTACGGGCCTTAAAAATAG
Found at i:11973800 original size:42 final size:42
Alignment explanation
Indices: 11973737--11973900 Score: 195
Period size: 42 Copynumber: 3.7 Consensus size: 42
11973727 CTTTGTTTTC
** *
11973737 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACAT-A
* *
11973780 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
11973821 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT--C-T-TCACATA
*
11973870 TCGATGCCGTAGCCCAGCTATGGTCTTACAC
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC
11973901 GAATCACATA
Statistics
Matches: 105, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
41 2 0.02
42 63 0.60
43 1 0.01
45 2 0.02
48 1 0.01
49 36 0.34
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATCTTCACATA
Found at i:11973883 original size:49 final size:48
Alignment explanation
Indices: 11973807--11973990 Score: 187
Period size: 47 Copynumber: 3.9 Consensus size: 48
11973797 TATGGTCTTA
*
11973807 CACATATTCATATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
*
11973857 CACATATCACATATCGATGCCGTAGCCCAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
* * * * * * * *
11973905 CACATATCTCA-CT-GATGCCATATCTCAGATATGGTCTTATACAGTAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACAC-GAAT
* * * *
11973952 CATATATCACA-CT-GATGCCATATCCCAGATATGGTCTTA
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTA
11973991 TACGGAAATC
Statistics
Matches: 119, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
46 24 0.20
47 39 0.33
48 13 0.11
49 37 0.31
50 6 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:11974002 original size:95 final size:95
Alignment explanation
Indices: 11973772--11973990 Score: 231
Period size: 91 Copynumber: 2.4 Consensus size: 95
11973762 TTACACATCT
* * *
11973772 TCACATAAT-GATGCCATAGCCCAGCTATGGTCTTACAC-ATAT-TCATATAT--C-GATGCCAT
1 TCACAT-ATCGATGCCATAGCCCAGATATGGTCTTACACGA-ATCACATATCTCACTGATGCCAT
* *
11973831 AGCCCAGCTATGGTCTTACACGTAATCACATA
64 AGCCCAGATATGGTCTTACACGTAAGCACATA
* * *
11973863 TCACATATCGATGCCGTAGCCCAGCTATGGTCTTACACGAATCACATATCTCACTGATGCCATAT
1 TCACATATCGATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAG
* * *
11973928 CTCAGATATGGTCTTATACAGT-AGCATATA
66 CCCAGATATGGTCTTACAC-GTAAGCACATA
* *
11973958 TCACA-CT-GATGCCATATCCCAGATATGGTCTTA
1 TCACATATCGATGCCATAGCCCAGATATGGTCTTA
11973991 TACGGAAATC
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
90 2 0.02
91 36 0.33
92 7 0.06
93 23 0.21
94 2 0.02
95 36 0.33
96 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (95 bp):
TCACATATCGATGCCATAGCCCAGATATGGTCTTACACGAATCACATATCTCACTGATGCCATAG
CCCAGATATGGTCTTACACGTAAGCACATA
Found at i:11974047 original size:31 final size:31
Alignment explanation
Indices: 11974012--11974129 Score: 175
Period size: 31 Copynumber: 3.8 Consensus size: 31
11974002 CTTGTCACTT
*
11974012 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* **
11974043 GTAGCC-AGAGCTACCATTTTTCACTGATTTG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
11974074 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
11974105 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
11974130 TGTCATTTGT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
30 1 0.01
31 75 0.99
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:11974109 original size:62 final size:62
Alignment explanation
Indices: 11974012--11974129 Score: 193
Period size: 62 Copynumber: 1.9 Consensus size: 62
11974002 CTTGTCACTT
*
11974012 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCC-AGAGCTACCATTTTTCACTGATTTG
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGA-AGCTACCACTTTTCACTGATTTG
* *
11974074 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACT
11974130 TGTCATTTGT
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
62 51 0.98
63 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (62 bp):
GTAGCCGAAGCTACCACTATTCACTGATCAGGTAGCCGAAGCTACCACTTTTCACTGATTTG
Found at i:11974259 original size:50 final size:50
Alignment explanation
Indices: 11974105--11974279 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
11974095 CACTGATCAG
* *
11974105 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
11974156 GTAGCCGAAACTATCACTTATCAC-TT-ACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
11974204 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
11974254 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
11974280 GTTGCCATGG
Statistics
Matches: 114, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
48 43 0.38
49 3 0.03
50 47 0.41
51 21 0.18
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:11982420 original size:49 final size:50
Alignment explanation
Indices: 11982231--11982425 Score: 239
Period size: 50 Copynumber: 3.9 Consensus size: 50
11982221 CTATTGTGAT
* * * *
11982231 GTCACGTGTGTCGTACTAAGTGCAGGCTACTATGTGTACCCGATAACTTCG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAAC-TAG
* * ***
11982282 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAG
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTAG
*
11982332 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAACT-G
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTAG
* * * * *
11982381 GTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
11982426 GCTTTGGCTA
Statistics
Matches: 123, Mismatches: 21, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
49 40 0.33
50 44 0.36
51 39 0.32
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (50 bp):
GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAACTAG
Found at i:11986968 original size:11 final size:11
Alignment explanation
Indices: 11986952--11987027 Score: 62
Period size: 11 Copynumber: 6.4 Consensus size: 11
11986942 GACAAGTTTG
*
11986952 TAAAATAAACA
1 TAAAATAAAAA
11986963 TAAAATAAAAA
1 TAAAATAAAAA
*
11986974 TAAAAGAAAAGA
1 TAAAATAAAA-A
*
11986986 TAAAAGAAAAGCGA
1 TAAAATAAAA---A
*
11987000 AAAAGATAAAAA
1 TAAA-ATAAAAA
11987012 TAAAAATAAAAA
1 T-AAAATAAAAA
11987024 TAAA
1 TAAA
11987028 TAGACTCAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
11 22 0.40
12 20 0.36
13 3 0.05
14 5 0.09
15 5 0.09
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.13
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:11987022 original size:5 final size:6
Alignment explanation
Indices: 11986953--11987027 Score: 50
Period size: 6 Copynumber: 12.3 Consensus size: 6
11986943 ACAAGTTTGT
* *
11986953 AAAATA AACAT- AAAATA AAAATA AAAGA-A AAGATA AAAGA-A AAGCGAA-A
1 AAAATA AAAATA AAAATA AAAATA AAA-ATA AAAATA AAA-ATA AA---AATA
*
11987002 AAGATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
11987028 TAGACTCAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
5 6 0.11
6 42 0.76
7 2 0.04
8 4 0.07
9 1 0.02
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:11994642 original size:54 final size:54
Alignment explanation
Indices: 11994578--11994687 Score: 195
Period size: 54 Copynumber: 2.0 Consensus size: 54
11994568 AAATCTATAT
11994578 ACAATTTAGGAAAATAATGGAGCTTGGTTCTTGTC-TACAAGAAATTTCATACTG
1 ACAATTTAGGAAAATAATGGAGCTTGGTTCTTG-CATACAAGAAATTTCATACTG
*
11994632 ACAATTTAGGAAAATAATGGAGCTTGGTTCTTGCATACAAGAAATTTCATATTG
1 ACAATTTAGGAAAATAATGGAGCTTGGTTCTTGCATACAAGAAATTTCATACTG
11994686 AC
1 AC
11994688 GGTGACGAAG
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
53 1 0.02
54 53 0.98
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (54 bp):
ACAATTTAGGAAAATAATGGAGCTTGGTTCTTGCATACAAGAAATTTCATACTG
Found at i:12002237 original size:18 final size:18
Alignment explanation
Indices: 12002216--12002252 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
12002206 AAATTGATGG
12002216 AATAAA-AATAAATAAATA
1 AATAAAGAA-AAATAAATA
12002234 AATAAAGAAAAATAAATA
1 AATAAAGAAAAATAAATA
12002252 A
1 A
12002253 CGAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 16 0.89
19 2 0.11
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (18 bp):
AATAAAGAAAAATAAATA
Found at i:12002245 original size:22 final size:22
Alignment explanation
Indices: 12002219--12002261 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12002209 TTGATGGAAT
*
12002219 AAAAATAAATAAATAAATAAAG
1 AAAAATAAATAAAGAAATAAAG
*
12002241 AAAAATAAATAACGAAATAAA
1 AAAAATAAATAAAGAAATAAA
12002262 TCAATAAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (22 bp):
AAAAATAAATAAAGAAATAAAG
Found at i:12006783 original size:15 final size:15
Alignment explanation
Indices: 12006765--12006796 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
12006755 ACAATTTCAC
12006765 ATATTTTATACTTGG
1 ATATTTTATACTTGG
12006780 ATATTTTATACTTGG
1 ATATTTTATACTTGG
12006795 AT
1 AT
12006797 TATAATAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (15 bp):
ATATTTTATACTTGG
Found at i:12008438 original size:43 final size:43
Alignment explanation
Indices: 12008390--12008475 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
12008380 GTTATTGTTG
12008390 AATAATATGTAATTATATGAATTACTTGATGAGTATGAACTAT
1 AATAATATGTAATTATATGAATTACTTGATGAGTATGAACTAT
*
12008433 AATAATATGTAATTATGTGAATTACTTGATGAGTATGAACTAT
1 AATAATATGTAATTATATGAATTACTTGATGAGTATGAACTAT
12008476 CACCGAGTAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.40
Consensus pattern (43 bp):
AATAATATGTAATTATATGAATTACTTGATGAGTATGAACTAT
Found at i:12010100 original size:22 final size:21
Alignment explanation
Indices: 12010070--12010111 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
12010060 CTAATTTAAT
*
12010070 TAATAAAATATTATTAAAATAA
1 TAATAAAATAATA-TAAAATAA
*
12010092 TAATTAAATAATATAAAATA
1 TAATAAAATAATATAAAATA
12010112 TCACCAACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
TAATAAAATAATATAAAATAA
Found at i:12014818 original size:19 final size:19
Alignment explanation
Indices: 12014796--12014837 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
12014786 TGTTTTAAAA
*
12014796 AAATTCAA-AATATTTAACT
1 AAATTCAACAATAATTAA-T
*
12014815 AAATTTAACAATAATTAAT
1 AAATTCAACAATAATTAAT
12014834 AAAT
1 AAAT
12014838 ATTAACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATTCAACAATAATTAAT
Found at i:12014832 original size:20 final size:20
Alignment explanation
Indices: 12014804--12014846 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
12014794 AAAAATTCAA
*
12014804 AATATTTAACTAAAT-TTAAC
1 AATAATTAA-TAAATATTAAC
12014824 AATAATTAATAAATATTAAC
1 AATAATTAATAAATATTAAC
12014844 AAT
1 AAT
12014847 TAAAAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (20 bp):
AATAATTAATAAATATTAAC
Found at i:12017010 original size:251 final size:252
Alignment explanation
Indices: 12016566--12017069 Score: 992
Period size: 251 Copynumber: 2.0 Consensus size: 252
12016556 ACTATCACGT
12016566 AGCACTAATCCATTAGTTCATCATAACATCTTATTTTACATGTCTTAACTTATATGTTGTTCACT
1 AGCACTAATCCATTAGTTCATCATAACATCTTATTTTACATGTCTTAACTTATATGTTGTTCACT
*
12016631 TTTCTACCTATTTTGACTGCCTAAATATCATAATTTTCACCATCTAAGACAATAACTTAAACATT
66 TTTCTACCTATTTTGACTGCCTAAAAATCATAATTTTCACCATCTAAGACAATAACTTAAACATT
12016696 GTTATAGATTATGCTTGTGGAAGTCATGATTAATTTTATTTTCACAAACTCACTTTGTAAGAATC
131 GTTATAGATTATGCTTGTGGAAGTCATGATTAATTTTATTTTCACAAACTCACTTTGTAAGAATC
12016761 TCTAGCTCTTGATACCAATTTGTTGGAGAGATTTTGGAAATGATGAAGGGAAAAGAC
196 TCTAGCTCTTGATACCAATTTGTTGGAGAGATTTTGGAAATGATGAAGGGAAAAGAC
12016818 AGCACTAATCCATTAGTTCATCATAACATCTTATTTTACATGTC-TAACTTATATGTTGTTCACT
1 AGCACTAATCCATTAGTTCATCATAACATCTTATTTTACATGTCTTAACTTATATGTTGTTCACT
12016882 TTTCTACCTATTTTGACTGCCTAAAAATCATAATTTTCACCATCTAAGACAATAACTTAAACATT
66 TTTCTACCTATTTTGACTGCCTAAAAATCATAATTTTCACCATCTAAGACAATAACTTAAACATT
12016947 GTTATAGATTATGCTTGTGGAAGTCATGATTAATTTTATTTTCACAAACTCACTTTGTAAGAATC
131 GTTATAGATTATGCTTGTGGAAGTCATGATTAATTTTATTTTCACAAACTCACTTTGTAAGAATC
12017012 TCTAGCTCTTGATACCAATTTGTTGGAGAGATTTTGGAAATGATGAAGGGAAAAGAC
196 TCTAGCTCTTGATACCAATTTGTTGGAGAGATTTTGGAAATGATGAAGGGAAAAGAC
12017069 A
1 A
12017070 CTCAACATGG
Statistics
Matches: 251, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
251 207 0.82
252 44 0.18
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (252 bp):
AGCACTAATCCATTAGTTCATCATAACATCTTATTTTACATGTCTTAACTTATATGTTGTTCACT
TTTCTACCTATTTTGACTGCCTAAAAATCATAATTTTCACCATCTAAGACAATAACTTAAACATT
GTTATAGATTATGCTTGTGGAAGTCATGATTAATTTTATTTTCACAAACTCACTTTGTAAGAATC
TCTAGCTCTTGATACCAATTTGTTGGAGAGATTTTGGAAATGATGAAGGGAAAAGAC
Found at i:12017249 original size:23 final size:23
Alignment explanation
Indices: 12017217--12017263 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
12017207 GTATACCTAG
12017217 TACATACATGCATCTTAGATAAA
1 TACATACATGCATCTTAGATAAA
* * *
12017240 TACATTCATGCATGTTAGTTAAA
1 TACATACATGCATCTTAGATAAA
12017263 T
1 T
12017264 GCCTATTAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (23 bp):
TACATACATGCATCTTAGATAAA
Found at i:12023306 original size:14 final size:14
Alignment explanation
Indices: 12023274--12023307 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
12023264 CCATTAGTAA
12023274 AATA-TCATATTTT
1 AATATTCATATTTT
12023287 ATATATTCATATTTT
1 A-ATATTCATATTTT
12023302 AATATT
1 AATATT
12023308 TTGAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 8 0.42
15 10 0.53
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (14 bp):
AATATTCATATTTT
Found at i:12026333 original size:26 final size:24
Alignment explanation
Indices: 12026303--12026352 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
12026293 AAATAAAAAA
*
12026303 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
12026329 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
12026353 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:12026372 original size:21 final size:21
Alignment explanation
Indices: 12026323--12026381 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
12026313 ATAATAAATC
*
12026323 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
12026343 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
12026365 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
12026382 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:12033919 original size:12 final size:12
Alignment explanation
Indices: 12033902--12033935 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
12033892 TTCAAGTGTA
12033902 TGAGAATAATGT
1 TGAGAATAATGT
12033914 TGAGAATAATGT
1 TGAGAATAATGT
12033926 TGAGAATAAT
1 TGAGAATAAT
12033936 TTCTTGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (12 bp):
TGAGAATAATGT
Found at i:12034042 original size:31 final size:31
Alignment explanation
Indices: 12034007--12034111 Score: 115
Period size: 31 Copynumber: 3.4 Consensus size: 31
12033997 TAATCACATT
*
12034007 AATATTAAATTAATAAAATAATATCTAGATA
1 AATATTAAATTAATAAAATAATATTTAGATA
** * *
12034038 AATATTAAATT-A-AATTTAATATTTCATATT
1 AATATTAAATTAATAAAATAATATTT-AGATA
* *
12034068 AATATTCAATTAATAAAATACTATTTAGATA
1 AATATTAAATTAATAAAATAATATTTAGATA
*
12034099 AATATTGAATTAA
1 AATATTAAATTAA
12034112 ATTTAATATT
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
29 9 0.15
30 14 0.24
31 27 0.46
32 9 0.15
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.41
Consensus pattern (31 bp):
AATATTAAATTAATAAAATAATATTTAGATA
Found at i:12034079 original size:61 final size:61
Alignment explanation
Indices: 12034004--12034121 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 61
12033994 AATTAATCAC
12034004 ATTAATATTAAATTAATAAAATAATATCTAGATAAATATTAAATTAAATTTAATATTTCAT
1 ATTAATATTAAATTAATAAAATAATATCTAGATAAATATTAAATTAAATTTAATATTTCAT
* * * *
12034065 ATTAATATTCAATTAATAAAATACTATTTAGATAAATATTGAATTAAATTTAATATT
1 ATTAATATTAAATTAATAAAATAATATCTAGATAAATATTAAATTAAATTTAATATT
12034122 AAATTCATTA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (61 bp):
ATTAATATTAAATTAATAAAATAATATCTAGATAAATATTAAATTAAATTTAATATTTCAT
Found at i:12035789 original size:13 final size:11
Alignment explanation
Indices: 12035761--12035803 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
12035751 AGTTAAATAT
12035761 TATTTTATTAA
1 TATTTTATTAA
12035772 TATTTTACTTAGA
1 TATTTTA-TTA-A
*
12035785 TA-TTTATTAT
1 TATTTTATTAA
12035795 TATTTTATT
1 TATTTTATT
12035804 TAGAAAATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 2 0.07
11 16 0.57
12 7 0.25
13 3 0.11
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:12035790 original size:23 final size:23
Alignment explanation
Indices: 12035764--12035807 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
12035754 TAAATATTAT
12035764 TTTATTAATATTTTACTTAGATA
1 TTTATTAATATTTTACTTAGATA
* *
12035787 TTTATTATTATTTTATTTAGA
1 TTTATTAATATTTTACTTAGA
12035808 AAATGGTAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61
Consensus pattern (23 bp):
TTTATTAATATTTTACTTAGATA
Found at i:12037119 original size:3 final size:3
Alignment explanation
Indices: 12037111--12037495 Score: 192
Period size: 3 Copynumber: 130.7 Consensus size: 3
12037101 CTATTTTAAG
* * * * ** *
12037111 ATT ATT ATT -TT AAT ATT GTC ACT ATT ATT ATT -TT ATT ACC GTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * ** * *
12037157 ATT ATAT ATT ATT ACTA ATT ATT ATT ATT ATT ATC ATT AGT AAC GTG
1 ATT AT-T ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
12037204 A-T ATT ATT TTT ATT CTT ATT GTT ATT ATT A-T ATTT ATT A-T ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * * *
12037247 A-T ATTT ATT -TT ATT ACT GTT ACT ATT ATT -TT ATAT ATTT ATC ACT
1 ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * *
12037292 ATT -TT -TT ATTT ATT ATT ATT A-T ATT AACT AAT -TT AAT A-T ATT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT
* * *
12037334 ATT -TT ACT ATT ATT ATT ATT ATT ATT ATT TTT ACT ATT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
** * * * * *
12037379 ATT ACC ATT ATT ATT ACT GTT AAT ATT ATT TTT AGT ACTT -TT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT
* ** ** *
12037423 TTT GCT GCT CTT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
12037470 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
12037496 CATTGTTGTC
Statistics
Matches: 287, Mismatches: 70, Indels: 50
0.71 0.17 0.12
Matches are distributed among these distances:
2 32 0.11
3 232 0.81
4 22 0.08
5 1 0.00
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:12037286 original size:28 final size:27
Alignment explanation
Indices: 12037238--12037410 Score: 100
Period size: 28 Copynumber: 6.5 Consensus size: 27
12037228 TTATTATATT
*
12037238 TATTATATTATATT-TAT-TTTATTAC
1 TATTATATTATTTTATATATTTATTAC
* *
12037263 TGTTACTATTATTTTATATATTTATCAC
1 TATTA-TATTATTTTATATATTTATTAC
*
12037291 TATT-TTTTA-TTTAT-TA-TTATTA-
1 TATTATATTATTTTATATATTTATTAC
* * *
12037313 TATTA-ACTAATTTAATATATTATTTTAC
1 TATTATA-TTATTTTATATATT-TATTAC
12037341 TATTATTATTATTATTAT-TATTT-TTAC
1 TATTA-TATTATT-TTATATATTTATTAC
*
12037368 TATTAT-TTATTATTACCAT-TATTATTAC
1 TATTATATTATT-TTA-TATAT-TTATTAC
*
12037396 TGTTAATATTATTTT
1 TATT-ATATTATTTT
12037411 TAGTACTTTT
Statistics
Matches: 115, Mismatches: 14, Indels: 34
0.71 0.09 0.21
Matches are distributed among these distances:
22 4 0.03
23 7 0.06
24 6 0.05
25 20 0.17
26 15 0.13
27 19 0.17
28 23 0.20
29 12 0.10
30 9 0.08
ACGTcount: A:0.31, C:0.06, G:0.01, T:0.62
Consensus pattern (27 bp):
TATTATATTATTTTATATATTTATTAC
Found at i:12039617 original size:2 final size:2
Alignment explanation
Indices: 12039612--12039644 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
12039602 AAATATATGA
12039612 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12039645 GTAGATGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12053359 original size:46 final size:46
Alignment explanation
Indices: 12053198--12053373 Score: 171
Period size: 47 Copynumber: 3.8 Consensus size: 46
12053188 TATTTGGCAT
* * * * *
12053198 CCGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGT
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
* * * *
12053244 CCGAAACTCGTTGAGTTGAGTCCGAGTT--C-GAGAGATG-TAACTAGGC
1 CCG-AGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAAC---GC
12053290 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
1 --CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
* *
12053338 CCGAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATAG
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAG
12053374 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 1 0.01
46 38 0.36
47 46 0.43
48 5 0.05
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
Found at i:12057627 original size:2 final size:2
Alignment explanation
Indices: 12057620--12057660 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
12057610 AATCCGTAAA
12057620 AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12057661 TCTACTAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12070230 original size:18 final size:18
Alignment explanation
Indices: 12070176--12070241 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
12070166 AAAAATTTTC
*
12070176 AATAAAAATATATAAAAT
1 AATAAAAATATTTAAAAT
* *
12070194 AATTAAATATTAATTAAAAT
1 AA-TAAA-AATATTTAAAAT
* *
12070214 AATATAAATATTTAAAAA
1 AATAAAAATATTTAAAAT
12070232 AATAAAAATA
1 AATAAAAATA
12070242 ATATGAGTCA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
18 20 0.53
19 7 0.18
20 11 0.29
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAAAATATTTAAAAT
Found at i:12070232 original size:20 final size:19
Alignment explanation
Indices: 12070187--12070236 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
12070177 ATAAAAATAT
12070187 ATAAAATAATTAAATATTA
1 ATAAAATAATTAAATATTA
12070206 ATTAAAATAATATAAATATTTA
1 A-TAAAATAAT-TAAATA-TTA
*
12070228 AAAAAATAA
1 ATAAAATAA
12070237 AAATAATATG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 9 0.33
21 13 0.48
22 4 0.15
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
ATAAAATAATTAAATATTA
Found at i:12073253 original size:14 final size:12
Alignment explanation
Indices: 12073229--12073263 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
12073219 TGTTTTATTT
12073229 TAAAAAAATAAAA
1 TAAAAAAAT-AAA
12073242 TAAAAAACATAAA
1 TAAAAAA-ATAAA
12073255 TAAAAAAAT
1 TAAAAAAAT
12073264 GTGGTACTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 2 0.10
13 17 0.81
14 2 0.10
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAAAAATAAA
Found at i:12073547 original size:23 final size:22
Alignment explanation
Indices: 12073521--12073572 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
12073511 CAATTGAAGC
*
12073521 AAAATTAAAAAAACAAACTAAT
1 AAAATTAAAAAAACAAACAAAT
* * *
12073543 GAAAAATATAAAAACAATCAAAT
1 -AAAATTAAAAAAACAAACAAAT
12073566 AAAATTA
1 AAAATTA
12073573 TGGAACAACC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.19
Consensus pattern (22 bp):
AAAATTAAAAAAACAAACAAAT
Found at i:12074425 original size:2 final size:2
Alignment explanation
Indices: 12074418--12074448 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
12074408 AAACAAAAAC
*
12074418 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12074449 AATTTCAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:12076463 original size:75 final size:75
Alignment explanation
Indices: 12076286--12076481 Score: 308
Period size: 75 Copynumber: 2.6 Consensus size: 75
12076276 TAAAATTGGA
* *
12076286 AAAGCCCTTCCTTGTCAATTGGAATGTTTTATGTCCTCAACTGAAAATCTTTGTTATGTTCAAAA
1 AAAGTCCTTCCTTGTCAATTGGAATGTTTTATGTCCTCAACTGAAAATCTTTGTTATGCTCAAAA
12076351 TAAGAAGAAG
66 TAAGAAGAAG
* * *
12076361 -AAGTCCTTCCTTGTCAATTGGAGTGTTTTATGTCCTCAATTGAAAA-CTTTTTTATGCTCAAAA
1 AAAGTCCTTCCTTGTCAATTGGAATGTTTTATGTCCTCAACTGAAAATCTTTGTTATGCTCAAAA
12076424 TCAGAGAA-AAG
66 T-A-AGAAGAAG
12076435 AAAGTCCTTCCTTGTCAATTGGAATGTTTTATGTCCTCAACTGAAAA
1 AAAGTCCTTCCTTGTCAATTGGAATGTTTTATGTCCTCAACTGAAAA
12076482 AATAAATCTC
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
73 16 0.14
74 47 0.42
75 48 0.43
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (75 bp):
AAAGTCCTTCCTTGTCAATTGGAATGTTTTATGTCCTCAACTGAAAATCTTTGTTATGCTCAAAA
TAAGAAGAAG
Found at i:12077128 original size:13 final size:13
Alignment explanation
Indices: 12077110--12077184 Score: 55
Period size: 13 Copynumber: 5.8 Consensus size: 13
12077100 TTTGACAATG
12077110 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
*
12077123 CTTTTGAGAAGTA
1 CTTTTGAAAAGTA
* * * *
12077136 ATGTGGAAAAGTG
1 CTTTTGAAAAGTA
* *
12077149 TTTTTGAGAAA-TG
1 CTTTTGA-AAAGTA
12077162 CTTTTGAGAAA-TA
1 CTTTTGA-AAAGTA
12077175 CTTTTGAAAA
1 CTTTTGAAAA
12077185 TTTTAAGTGT
Statistics
Matches: 50, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
12 3 0.06
13 44 0.88
14 3 0.06
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:12079320 original size:72 final size:71
Alignment explanation
Indices: 12079196--12079366 Score: 236
Period size: 72 Copynumber: 2.4 Consensus size: 71
12079186 AAAATCATAT
** *
12079196 ATAAACAACTATTGATAAAACTAATTTAGTATAAATAAGTAGAACATAAATTCAATAACCAAAGA
1 ATAAACAACTATTGATAAAACTAATTTAACATAAATAAGTAGAACATAAATTCAATAACCAAAAA
12079261 CCAAAC
66 CCAAAC
* * * *
12079267 ATAAACAACTATTAATAAAAGTAGA-TTACACATAGATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTA-ATTTA-ACATAAATAAGTAGAACATAAATTCAATAACCAAA
12079331 AACCAAAC
64 AACCAAAC
* *
12079339 ATAAATAACTATTGATAAAACTAGTTTA
1 ATAAACAACTATTGATAAAACTAATTTA
12079367 GGATTTTTGT
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
71 24 0.28
72 62 0.72
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.25
Consensus pattern (71 bp):
ATAAACAACTATTGATAAAACTAATTTAACATAAATAAGTAGAACATAAATTCAATAACCAAAAA
CCAAAC
Found at i:12079812 original size:18 final size:18
Alignment explanation
Indices: 12079791--12079856 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
12079781 TCCATCAATT
12079791 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
12079809 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
12079827 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
*
12079845 CGAACATCATTT
1 TGAACATCATTT
12079857 CTCACATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 46 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:12083094 original size:24 final size:24
Alignment explanation
Indices: 12083062--12083116 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
12083052 ATAGGTTAAG
*
12083062 GATTTTTGCATGTTTAGTTCCTAA
1 GATTTTTGCATGCTTAGTTCCTAA
12083086 GATTTTTGCATGCTTAGTTCCTAA
1 GATTTTTGCATGCTTAGTTCCTAA
12083110 GATTTTT
1 GATTTTT
12083117 TATAAGTCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.20, C:0.13, G:0.16, T:0.51
Consensus pattern (24 bp):
GATTTTTGCATGCTTAGTTCCTAA
Found at i:12088109 original size:7 final size:7
Alignment explanation
Indices: 12088099--12088151 Score: 106
Period size: 7 Copynumber: 7.6 Consensus size: 7
12088089 TTATATACAT
12088099 AATACTA
1 AATACTA
12088106 AATACTA
1 AATACTA
12088113 AATACTA
1 AATACTA
12088120 AATACTA
1 AATACTA
12088127 AATACTA
1 AATACTA
12088134 AATACTA
1 AATACTA
12088141 AATACTA
1 AATACTA
12088148 AATA
1 AATA
12088152 TGAAACGACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 46 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:12094545 original size:11 final size:11
Alignment explanation
Indices: 12094529--12094565 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
12094519 TTTTTGCATG
12094529 AAAAGCAAAAT
1 AAAAGCAAAAT
12094540 AAAAGCAAAAT
1 AAAAGCAAAAT
*
12094551 AGAAGCAAATAT
1 AAAAGCAAA-AT
12094563 AAA
1 AAA
12094566 CTCACTTGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.70, C:0.08, G:0.11, T:0.11
Consensus pattern (11 bp):
AAAAGCAAAAT
Found at i:12107050 original size:91 final size:93
Alignment explanation
Indices: 12106890--12107110 Score: 308
Period size: 91 Copynumber: 2.4 Consensus size: 93
12106880 TTTGACATGA
* * * * *
12106890 TGCCATGGTGTCTTTCAACTATGGTCTTACTCATTT-TCTGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACTGTCATGCTGCCATGGTATCTTTCAA
* *
12106954 CCATGGTCTTA-TTCATTTCATGTCACGC
66 CCATGGTCTTACAT-ATTTCATATCACGC
12106982 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACAT-T-A-GCTGCCATGGTATCTTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAC-TGTCATGCTGCCATGGTATCTTTCA
* *
12107044 ACCATGGTCTTACATATTTCATATCAGGT
65 ACCATGGTCTTACATATTTCATATCACGC
12107073 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
12107111 TATCAGAGAG
Statistics
Matches: 117, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
91 79 0.68
92 35 0.30
93 2 0.02
94 1 0.01
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.39
Consensus pattern (93 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACTGTCATGCTGCCATGGTATCTTTCAA
CCATGGTCTTACATATTTCATATCACGC
Found at i:12107109 original size:46 final size:46
Alignment explanation
Indices: 12106890--12107116 Score: 305
Period size: 46 Copynumber: 5.0 Consensus size: 46
12106880 TTTGACATGA
* * * * * *
12106890 TGCCATGGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * *
12106936 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
12106982 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCACATTA-GC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
12107027 TGCCATGGTATCTTTCAACCATGGTCTTACATATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
12107073 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
12107117 AGAGCACACT
Statistics
Matches: 164, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
45 46 0.28
46 118 0.72
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:12109293 original size:30 final size:32
Alignment explanation
Indices: 12109245--12109307 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 32
12109235 TGTCATTATT
12109245 TAATTATTTATCATATAAA-ATCT-TATAATA
1 TAATTATTTATCATATAAATATCTATATAATA
* *
12109275 TAATTATTTAATTA-ATAAATATCTATTTAATA
1 TAATTATTT-ATCATATAAATATCTATATAATA
12109307 T
1 T
12109308 CTAATACATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 14 0.50
31 7 0.25
32 7 0.25
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (32 bp):
TAATTATTTATCATATAAATATCTATATAATA
Found at i:12110002 original size:12 final size:12
Alignment explanation
Indices: 12109985--12110010 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
12109975 TTAGAGGATA
12109985 CTATCATAAAAG
1 CTATCATAAAAG
12109997 CTATCATAAAAG
1 CTATCATAAAAG
12110009 CT
1 CT
12110011 GGGCGGTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.19, G:0.08, T:0.27
Consensus pattern (12 bp):
CTATCATAAAAG
Found at i:12110326 original size:23 final size:23
Alignment explanation
Indices: 12110295--12110356 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
12110285 ACACAAATTT
*
12110295 TAAAATTTGAAAAATAAAGA-TAC
1 TAAATTTTGAAAAATAAA-ATTAC
12110318 TAAATTTTGAAAAATAAAATTAC
1 TAAATTTTGAAAAATAAAATTAC
* *
12110341 AAAATTTTAAAAAATA
1 TAAATTTTGAAAAATA
12110357 CAAAGACTTA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 1 0.03
23 34 0.97
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (23 bp):
TAAATTTTGAAAAATAAAATTAC
Found at i:12111175 original size:54 final size:53
Alignment explanation
Indices: 12111060--12111253 Score: 210
Period size: 54 Copynumber: 3.6 Consensus size: 53
12111050 CCCCAACAAA
* * ** * *
12111060 TTTACTTCCCCCAAAATCCTCAAAACTTTTTTCATTTTATTCCCCCCCCCCAAACT
1 TTTACTTCCCCC-AAACCCT-AAAACTTTTTTCTTTTTATT-TTCTCCCCAAAACT
*
12111116 TTTACTTCCCCTAAACTCCTAAAACTTTTTTCTTTTTATTTTCTCCCCAAAACT
1 TTTACTTCCCCCAAAC-CCTAAAACTTTTTTCTTTTTATTTTCTCCCCAAAACT
* * * *
12111170 TTTACTTCCCCCAAACCCCAAAAATATTTTTCTTTTTACTTT-TCCCCAAAACA
1 TTTACTTCCCCCAAACCCTAAAACT-TTTTTCTTTTTATTTTCTCCCCAAAACT
* *
12111223 TTTACTTCCACCAAACCTCAAAAACTTTTTT
1 TTTACTTCCCCCAAACC-CTAAAACTTTTTT
12111254 TTGAAGTAAC
Statistics
Matches: 120, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
53 38 0.32
54 46 0.38
55 22 0.18
56 14 0.12
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40
Consensus pattern (53 bp):
TTTACTTCCCCCAAACCCTAAAACTTTTTTCTTTTTATTTTCTCCCCAAAACT
Found at i:12111254 original size:54 final size:53
Alignment explanation
Indices: 12111047--12111253 Score: 185
Period size: 53 Copynumber: 3.8 Consensus size: 53
12111037 ATCCTTCTAC
*
12111047 TTTCCCCAACAA-ATTTACTTCCCCCAAAATCCTC-AAAACTTTTTTCATTTTAT
1 TTTCCCCAA-AACATTTACTTCCCCCAAAA-CCTCAAAAACTTTTTTCTTTTTAT
** * * * *
12111100 TCCCCCCCCCCAAACTTTTACTT-CCCCTAAA-CTCCTAAAACTTTTTTCTTTTTATT
1 T---TTCCCCAAAACATTTACTTCCCCCAAAACCT-CAAAAACTTTTTTCTTTTTA-T
* *
12111156 TTCTCCCCAAAACTTTTACTTCCCCC-AAACCCCAAAAA-TATTTTTCTTTTTACT
1 TT-TCCCCAAAACATTTACTTCCCCCAAAACCTCAAAAACT-TTTTTCTTTTTA-T
*
12111210 TTTCCCCAAAACATTTACTTCCACC-AAACCTCAAAAACTTTTTT
1 TTTCCCCAAAACATTTACTTCCCCCAAAACCTCAAAAACTTTTTT
12111254 TTGAAGTAAC
Statistics
Matches: 127, Mismatches: 15, Indels: 24
0.77 0.09 0.14
Matches are distributed among these distances:
53 41 0.32
54 41 0.32
55 31 0.24
56 14 0.11
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.39
Consensus pattern (53 bp):
TTTCCCCAAAACATTTACTTCCCCCAAAACCTCAAAAACTTTTTTCTTTTTAT
Found at i:12115585 original size:4 final size:4
Alignment explanation
Indices: 12115576--12115608 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
12115566 CATATTGCTC
12115576 AATA AATA AATA AATA AATA AATA AATA AATA A
1 AATA AATA AATA AATA AATA AATA AATA AATA A
12115609 TAATTGACGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Done.