Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 52 of 433
Found at i:14287135 original size:13 final size:13
Alignment explanation
Indices: 14287117--14287151 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
14287107 TAATAAAAAA
* *
14287117 TTTATAACTTTTT
1 TTTATAAATTTTG
14287130 TTTATAAATTTTG
1 TTTATAAATTTTG
14287143 TTTATAAAT
1 TTTATAAAT
14287152 ATTTAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (13 bp):
TTTATAAATTTTG
Found at i:14298097 original size:16 final size:16
Alignment explanation
Indices: 14298060--14298097 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
14298050 CTAGTCCCTA
14298060 AACCCTAAAAAACCTT
1 AACCCTAAAAAACCTT
14298076 AA-CCTAACAAAACC-T
1 AACCCTAA-AAAACCTT
14298091 AACCCTA
1 AACCCTA
14298098 TCCTCTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (16 bp):
AACCCTAAAAAACCTT
Found at i:14300769 original size:16 final size:18
Alignment explanation
Indices: 14300750--14300789 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
14300740 ATATTTATAT
14300750 AATTTAT-ATT-TAAAAA
1 AATTTATAATTATAAAAA
*
14300766 AATTT-TAATTATTAAAA
1 AATTTATAATTATAAAAA
14300783 AATTTAT
1 AATTTAT
14300790 TAGTATGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 1 0.05
16 8 0.40
17 10 0.50
18 1 0.05
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AATTTATAATTATAAAAA
Found at i:14301776 original size:30 final size:25
Alignment explanation
Indices: 14301713--14301776 Score: 65
Period size: 30 Copynumber: 2.3 Consensus size: 25
14301703 ATTTTTAGAA
14301713 TTTAAATAATATTTTTTTATAATTT
1 TTTAAATAATATTTTTTTATAATTT
*
14301738 TATAAAATACATAATTTTTTATAATATATTT
1 T-TTAAATA-AT-ATTTTTT-T-ATA-ATTT
14301769 TTTAAATA
1 TTTAAATA
14301777 TTTATAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
25 1 0.03
26 6 0.19
27 2 0.06
28 7 0.23
29 1 0.03
30 9 0.29
31 5 0.16
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (25 bp):
TTTAAATAATATTTTTTTATAATTT
Found at i:14301803 original size:41 final size:40
Alignment explanation
Indices: 14301718--14301803 Score: 93
Period size: 41 Copynumber: 2.1 Consensus size: 40
14301708 TAGAATTTAA
* * * **
14301718 ATAATATTTTTTTATAATTTTATAAAATACATAATTTTTT
1 ATAATATTTTTTTATAATTTTATAAAATAAAAAAATTTCC
*
14301758 ATAATATATTTTTTA-AATATTTATAATATAAAAAAATTTCC
1 ATAATAT-TTTTTTATAAT-TTTATAAAATAAAAAAATTTCC
14301799 ATAAT
1 ATAAT
14301804 CATCTTAAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
40 10 0.26
41 28 0.74
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.51
Consensus pattern (40 bp):
ATAATATTTTTTTATAATTTTATAAAATAAAAAAATTTCC
Found at i:14302438 original size:2 final size:2
Alignment explanation
Indices: 14302431--14302461 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14302421 GCCTCCAAAT
14302431 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14302462 TCTTACAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14302673 original size:20 final size:20
Alignment explanation
Indices: 14302650--14302702 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
14302640 GATCAACTGC
14302650 AAATAATTTTAATCAAGTCA
1 AAATAATTTTAATCAAGTCA
* * *
14302670 AAATAATTTCAATCATGTTA
1 AAATAATTTTAATCAAGTCA
*
14302690 AAATCATTTTAAT
1 AAATAATTTTAAT
14302703 TGTTTTTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (20 bp):
AAATAATTTTAATCAAGTCA
Found at i:14305745 original size:2 final size:2
Alignment explanation
Indices: 14305738--14305769 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
14305728 ATGTGATAGA
14305738 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14305770 GGTGCATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14309294 original size:22 final size:21
Alignment explanation
Indices: 14309268--14309329 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
14309258 ACGGAACTTG
*
14309268 TTTTAATTTTTTTTATTTTTA
1 TTTTTATTTTTTTTATTTTTA
*
14309289 TTTTTATTTTTTTTA-ATTTA
1 TTTTTATTTTTTTTATTTTTA
*
14309309 TTTATT-TATTTATTTATTTTT
1 TTT-TTAT-TTTTTTTATTTTT
14309330 TAAATTTCGA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 8 0.24
21 23 0.68
22 3 0.09
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTTATTTTTTTTATTTTTA
Found at i:14309311 original size:4 final size:4
Alignment explanation
Indices: 14309291--14309331 Score: 52
Period size: 4 Copynumber: 11.0 Consensus size: 4
14309281 TATTTTTATT
*
14309291 TTTA TTT- TTT- TTAA TTTA TTTA TTTA TTTA TTTA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
14309332 AATTTCGACA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 8 0.24
4 25 0.76
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:14310814 original size:46 final size:47
Alignment explanation
Indices: 14310706--14310824 Score: 116
Period size: 46 Copynumber: 2.5 Consensus size: 47
14310696 CTTCGACATG
* * *
14310706 GACTTACATGAG-TTATTCCTATCTCCAATGCCATATATATATCTAATATG
1 GACTTACATG-GCTTATTCCTGTCTCCAAAGCC--A-ATATATCTAATATA
* * *
14310756 GGCTTACGTGGCTTATTCCTGTCTCCAAAGCC-ATATATCTGATATA
1 GACTTACATGGCTTATTCCTGTCTCCAAAGCCAATATATCTAATATA
* *
14310802 GACTTACATGGCTCATTTCTGTC
1 GACTTACATGGCTTATTCCTGTC
14310825 CTGTCCTGTC
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
46 31 0.53
49 1 0.02
50 26 0.45
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
GACTTACATGGCTTATTCCTGTCTCCAAAGCCAATATATCTAATATA
Found at i:14312663 original size:23 final size:21
Alignment explanation
Indices: 14312630--14312671 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
14312620 ACAGATACGC
14312630 GAATTCCACCCAAACACACTA
1 GAATTCCACCCAAACACACTA
14312651 GAATGTCCAACCCAAACACAC
1 GAAT-TCC-ACCCAAACACAC
14312672 CTGGAATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.43, C:0.38, G:0.07, T:0.12
Consensus pattern (21 bp):
GAATTCCACCCAAACACACTA
Found at i:14315679 original size:46 final size:46
Alignment explanation
Indices: 14315612--14315828 Score: 292
Period size: 46 Copynumber: 4.7 Consensus size: 46
14315602 TGGCAACCTG
*
14315612 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * *
14315658 TGTGTAAGACCATGGTTGAAAGATACCATGCCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
14315704 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * *
14315750 AGAATAAGACCATGGTTGAAAGATACCATGACAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
14315796 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
14315829 TCACGTCAAA
Statistics
Matches: 153, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 152 0.99
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:14315814 original size:138 final size:130
Alignment explanation
Indices: 14315563--14315818 Score: 343
Period size: 138 Copynumber: 1.9 Consensus size: 130
14315553 AGTGTGCTCT
*
14315563 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * * * *
14315628 TGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGCCAAC
66 TGAAAGATACCATGACAACATGACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGCCAAC
* * *
14315693 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
14315758 ACCATGGTTGAAAGATACCATGACAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
58 ACCATGGTTGAAAGATACCATGACAACATGACATG-AAATGAGTAAGACCATAGTTGAAAGA
14315819 CACTATGGCA
Statistics
Matches: 108, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
130 46 0.43
133 2 0.02
136 1 0.01
137 1 0.01
138 58 0.54
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGACAACATGACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGCCAAC
Found at i:14316738 original size:3 final size:3
Alignment explanation
Indices: 14316730--14316773 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
14316720 TAGCTACGAA
14316730 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14316774 ATTATTAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:14317670 original size:17 final size:16
Alignment explanation
Indices: 14317633--14317670 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
14317623 TTTCATAAAT
14317633 TAAT-TCTTTAATTAA
1 TAATATCTTTAATTAA
14317648 TAAATATCTTTAACTTAA
1 T-AATATCTTTAA-TTAA
14317666 TAATA
1 TAATA
14317671 ATAATAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.05
16 3 0.15
17 11 0.55
18 5 0.25
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATATCTTTAATTAA
Found at i:14317671 original size:3 final size:3
Alignment explanation
Indices: 14317663--14317733 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
14317653 ATCTTTAACT
**
14317663 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA -AA CCA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
14317709 TAC TAA TAA TTAA TAA TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA
14317734 AATCTTAGAT
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.88
4 3 0.05
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:14321603 original size:22 final size:22
Alignment explanation
Indices: 14321578--14321629 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
14321568 TACAAAATCT
14321578 ATCGTGATGCATTCTCATTTCC
1 ATCGTGATGCATTCTCATTTCC
14321600 ATCGTGATGCATTCTCATTTCC
1 ATCGTGATGCATTCTCATTTCC
14321622 ATCGTGAT
1 ATCGTGAT
14321630 TCAACTAGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.19, C:0.25, G:0.15, T:0.40
Consensus pattern (22 bp):
ATCGTGATGCATTCTCATTTCC
Found at i:14321898 original size:331 final size:331
Alignment explanation
Indices: 14321296--14322284 Score: 1852
Period size: 331 Copynumber: 3.0 Consensus size: 331
14321286 TAACTTCCCC
14321296 GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
1 GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
*
14321361 CTCAGAATACAATAGAAATATACCTGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCTGGA
66 CTCAGAATACAATAGAAATATACCTGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCCGGA
14321426 CTACGTACGCTCTGGCTGGCGCTCTGGCCTCTAACTGTTGTGTAACTATATCACTGTTTCTTCTG
131 CTACGTACGCTCTGGCTGGCGCTCTGGCCTCTAACTGTTGTGTAACTATATCACTGTTTCTTCTG
14321491 ACACCTCCACCTTTAGACACAGAACCCGAACCACCCCAACTAGATCCTCTGCCACGAACAGTAGG
196 ACACCTCCACCTTTAGACACAGAACCCGAACCACCCCAACTAGATCCTCTGCCACGAACAGTAGG
*
14321556 TACTGATCTTGTTACAAAATCTATCGTGATGCATTCTCATTTCCATCGTGATGCATTCTCATTTC
261 TACTGATCTTGTTACAAAATCCATCGTGATGCATTCTCATTTCCATCGTGATGCATTCTCATTTC
14321621 CATCGT
326 CATCGT
14321627 GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
1 GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
*
14321692 CTCAGAATACAATAGAAATATACATGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCCGGA
66 CTCAGAATACAATAGAAATATACCTGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCCGGA
* *
14321757 CTACGTACACTCTGGCTGGCGCTCTAGCCTCTAACTGTTGTGTAACTATATCACTGTTTCTTCTG
131 CTACGTACGCTCTGGCTGGCGCTCTGGCCTCTAACTGTTGTGTAACTATATCACTGTTTCTTCTG
*
14321822 ACACCTCCACCTTTAGACACAGAACCTGAACCACCCCAACTAGATCCTCTGCCACGAACAGTAGG
196 ACACCTCCACCTTTAGACACAGAACCCGAACCACCCCAACTAGATCCTCTGCCACGAACAGTAGG
* *
14321887 TACTGATCTTGTTACAAAATCCATCGTGTTGCATTCTCATTTCCATCGTGATGCATTCTCATTTT
261 TACTGATCTTGTTACAAAATCCATCGTGATGCATTCTCATTTCCATCGTGATGCATTCTCATTTC
*
14321952 TATCGT
326 CATCGT
14321958 GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
1 GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
*
14322023 CTCAGAATATAATAGAAATATACCTGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCCGGA
66 CTCAGAATACAATAGAAATATACCTGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCCGGA
*
14322088 CTACGTACGCTCTGGCTGGCGCTCTGGCCTCTGACTGTTGTGTAACTATATCACTGTTTCTTCTG
131 CTACGTACGCTCTGGCTGGCGCTCTGGCCTCTAACTGTTGTGTAACTATATCACTGTTTCTTCTG
* *
14322153 ACACCTCCACCTTTAGACACAGAACCCAAACCACCCCAACTAGATCCTCTGCCACGAAGAGTAGG
196 ACACCTCCACCTTTAGACACAGAACCCGAACCACCCCAACTAGATCCTCTGCCACGAACAGTAGG
*
14322218 TACTGATCTTGTTACAAAATCCATCGTGATGCATTCTCATTTCCATCGTGATGCATTCTTATTTC
261 TACTGATCTTGTTACAAAATCCATCGTGATGCATTCTCATTTCCATCGTGATGCATTCTCATTTC
14322283 CA
326 CA
14322285 CTCAAGAATA
Statistics
Matches: 637, Mismatches: 21, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
331 637 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (331 bp):
GATTCAACTAGTTTTGAATTTATATATGAGTGTGACGAACCCGGATCAATTAAAGCATAAATAGG
CTCAGAATACAATAGAAATATACCTGTAACAACGTCATGTGCATCGCCCTCCTCACGGGTCCGGA
CTACGTACGCTCTGGCTGGCGCTCTGGCCTCTAACTGTTGTGTAACTATATCACTGTTTCTTCTG
ACACCTCCACCTTTAGACACAGAACCCGAACCACCCCAACTAGATCCTCTGCCACGAACAGTAGG
TACTGATCTTGTTACAAAATCCATCGTGATGCATTCTCATTTCCATCGTGATGCATTCTCATTTC
CATCGT
Found at i:14321934 original size:22 final size:22
Alignment explanation
Indices: 14321906--14321960 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
14321896 TGTTACAAAA
*
14321906 TCCATCGTGTTGCATTCTCATT
1 TCCATCGTGATGCATTCTCATT
14321928 TCCATCGTGATGCATTCTCATT
1 TCCATCGTGATGCATTCTCATT
**
14321950 TTTATCGTGAT
1 TCCATCGTGAT
14321961 TCAACTAGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.16, C:0.24, G:0.15, T:0.45
Consensus pattern (22 bp):
TCCATCGTGATGCATTCTCATT
Found at i:14322262 original size:22 final size:22
Alignment explanation
Indices: 14322237--14322284 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
14322227 TGTTACAAAA
14322237 TCCATCGTGATGCATTCTCATT
1 TCCATCGTGATGCATTCTCATT
*
14322259 TCCATCGTGATGCATTCTTATT
1 TCCATCGTGATGCATTCTCATT
14322281 TCCA
1 TCCA
14322285 CTCAAGAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (22 bp):
TCCATCGTGATGCATTCTCATT
Found at i:14326779 original size:22 final size:22
Alignment explanation
Indices: 14326751--14326794 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
14326741 TTCTCCTTAC
14326751 AATAGAGAAACAACACATATAA
1 AATAGAGAAACAACACATATAA
14326773 AATAGAGAAACAACACATATAA
1 AATAGAGAAACAACACATATAA
14326795 CGCTTTCACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.64, C:0.14, G:0.09, T:0.14
Consensus pattern (22 bp):
AATAGAGAAACAACACATATAA
Found at i:14327885 original size:31 final size:31
Alignment explanation
Indices: 14327850--14327916 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
14327840 TTGTAGGGGT
*
14327850 CACACAGCCATATAGGTATTCAAAATAGGGA
1 CACACAGCCATATAGGCATTCAAAATAGGGA
* ** * *
14327881 CACACGGCTGTGTGGGCATTCAAAATAGGGA
1 CACACAGCCATATAGGCATTCAAAATAGGGA
14327912 CACAC
1 CACAC
14327917 GGCCGTGTCC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (31 bp):
CACACAGCCATATAGGCATTCAAAATAGGGA
Found at i:14329712 original size:19 final size:18
Alignment explanation
Indices: 14329670--14329712 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
14329660 TTAATATTAC
*
14329670 ACATTTCAATTTCACATT
1 ACATTTCAATTTCACACT
14329688 ACATTTCAATTTCCACACT
1 ACATTTCAATTT-CACACT
*
14329707 ATATTT
1 ACATTT
14329713 TGCTTATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (18 bp):
ACATTTCAATTTCACACT
Found at i:14347792 original size:21 final size:21
Alignment explanation
Indices: 14347766--14347814 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
14347756 TTACCATTGA
14347766 GTCTCGAGACAACATAAAAAT
1 GTCTCGAGACAACATAAAAAT
* * *
14347787 GTCTCGAGGCAACGTAAACAT
1 GTCTCGAGACAACATAAAAAT
*
14347808 ATCTCGA
1 GTCTCGA
14347815 AACCATAAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.20
Consensus pattern (21 bp):
GTCTCGAGACAACATAAAAAT
Found at i:14350582 original size:46 final size:46
Alignment explanation
Indices: 14350532--14350704 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
14350522 TGGTTGAGCA
14350532 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
14350578 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
14350623 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14350671 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
14350705 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14350688 original size:93 final size:93
Alignment explanation
Indices: 14350529--14350699 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
14350519 GGATGGTTGA
* *
14350529 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14350594 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
14350622 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14350687 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
14350700 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:14353693 original size:49 final size:49
Alignment explanation
Indices: 14353633--14353821 Score: 346
Period size: 49 Copynumber: 3.9 Consensus size: 49
14353623 GTATGAGATA
*
14353633 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
14353682 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
14353731 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
14353778 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
14353822 TATATGTGTG
Statistics
Matches: 137, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
47 47 0.34
49 90 0.66
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:14353742 original size:98 final size:96
Alignment explanation
Indices: 14353633--14353821 Score: 342
Period size: 96 Copynumber: 1.9 Consensus size: 96
14353623 GTATGAGATA
14353633 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA--GTGTATATATGTGATAAGG
14353698 CCTAATGGCCGATGTGATGAATGAGAAAGTGTG
64 CCTAATGGCCGATGTGATGAATGAGAAAGTGTG
*
14353731 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
14353796 TAATGGCCGATGTGATGAATGTGAAA
66 TAATGGCCGATGTGATGAATGAGAAA
14353822 TATATGTGTG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
96 46 0.52
98 43 0.48
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGAGAAAGTGTG
Found at i:14353962 original size:37 final size:37
Alignment explanation
Indices: 14353908--14353998 Score: 146
Period size: 37 Copynumber: 2.4 Consensus size: 37
14353898 AACTTGGAAA
* *
14353908 TATGTTCCGGGTGAGACCCAATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCAATGACTACGTGTAGAGAT
*
14353946 TATGTCCGGGTAAGACCCGATGACTACGTGTAGAGAT
1 TATGTCCGGGTAAGACCCAATGACTACGTGTAGAGAT
14353983 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
14353999 TTCGTAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
37 46 0.92
38 4 0.08
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCAATGACTACGTGTAGAGAT
Found at i:14360611 original size:12 final size:12
Alignment explanation
Indices: 14360579--14360619 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
14360569 TTTGGAAACA
14360579 GTTATATGAAAAT
1 GTTATATG-AAAT
*
14360592 AATTATATGAAAT
1 -GTTATATGAAAT
14360605 GTTATATGAAAT
1 GTTATATGAAAT
14360617 GTT
1 GTT
14360620 TACATGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 14 0.56
13 4 0.16
14 7 0.28
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (12 bp):
GTTATATGAAAT
Found at i:14363570 original size:23 final size:23
Alignment explanation
Indices: 14363540--14363584 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
14363530 ATACAACATG
14363540 TTCAATTCACAATTTAGTCCTTT
1 TTCAATTCACAATTTAGTCCTTT
14363563 TTCAATTCACAATTTAGTCCTT
1 TTCAATTCACAATTTAGTCCTT
14363585 CAAAACCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.04, T:0.47
Consensus pattern (23 bp):
TTCAATTCACAATTTAGTCCTTT
Found at i:14364784 original size:12 final size:12
Alignment explanation
Indices: 14364767--14364799 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
14364757 TAGCCCACCC
14364767 ATATTAATTTTT
1 ATATTAATTTTT
14364779 ATATT-ATTTTT
1 ATATTAATTTTT
14364790 ATA-TAATTTT
1 ATATTAATTTT
14364800 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:14364834 original size:17 final size:19
Alignment explanation
Indices: 14364798--14364846 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 19
14364788 TTATATAATT
*
14364798 TTAAAATATATATAATACA
1 TTAAAATATATATAAAACA
14364817 TTAAAATAT-TA-AAAACA
1 TTAAAATATATATAAAACA
* *
14364834 TCAAAATAAATAT
1 TTAAAATATATAT
14364847 TTCCCAACAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 12 0.48
18 4 0.16
19 9 0.36
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAATATATATAAAACA
Found at i:14364958 original size:30 final size:30
Alignment explanation
Indices: 14364922--14364984 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14364912 ACTTAACAAG
*
14364922 CAAATGTCTCTAAAATAATAATAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
14364952 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
14364982 CAA
1 CAA
14364985 TAAAATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:14366882 original size:11 final size:11
Alignment explanation
Indices: 14366866--14366892 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14366856 AAGGTGAGGT
14366866 CCTATAGATAC
1 CCTATAGATAC
14366877 CCTATAGATAC
1 CCTATAGATAC
14366888 CCTAT
1 CCTAT
14366893 TGTCTAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (11 bp):
CCTATAGATAC
Found at i:14368307 original size:42 final size:43
Alignment explanation
Indices: 14368201--14368350 Score: 128
Period size: 43 Copynumber: 3.5 Consensus size: 43
14368191 ATCTGAGATA
* * * * * *
14368201 TCGTGTAAGACCATGTCT-GGACACAAGCCTTGAT-TTGAGATT
1 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATACT-AAATT
*
14368243 TACGTGTAAGACCATGTCTGGGACATAGGCATC-ATATCT-AATT
1 T-CGTGTAAGACCATGTCTGGGACAGAGGCATCGATA-CTAAATT
* *
14368286 TCGTGTAAGACCCTGTTTGGGACAGAGGCATCGATACTAAATT
1 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATACTAAATT
* * * *
14368329 ACATGTAAGACCACGTCCGGGA
1 TCGTGTAAGACCATGTCTGGGA
14368351 TGCCGGCATT
Statistics
Matches: 87, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
42 31 0.36
43 46 0.53
44 9 0.10
45 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATACTAAATT
Found at i:14375583 original size:44 final size:44
Alignment explanation
Indices: 14375518--14375678 Score: 143
Period size: 43 Copynumber: 3.7 Consensus size: 44
14375508 ATTGACATTG
* * *
14375518 ATCTGAGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTC-A
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * * *
14375561 ATTTGAGATTTACGTGTAAGACCATGTCTAGGACATAGGCATCGT
1 ATCTGAGATTT-CGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * *
14375606 ATCT--GATTTCATGTAAGACCCTGTCTGGGACAGAGGCATCG-
1 ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
* * * *
14375647 ATACTGA-ATTACATGTAAGACCACGTCCGGGA
1 AT-CTGAGATTTCGTGTAAGACCATGTCTGGGA
14375679 TGCCGGAATT
Statistics
Matches: 97, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 2 0.02
42 30 0.31
43 35 0.36
44 27 0.28
45 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
ATCTGAGATTTCGTGTAAGACCATGTCTGGGACACAGGCATCGA
Found at i:14375631 original size:42 final size:43
Alignment explanation
Indices: 14375570--14375669 Score: 132
Period size: 42 Copynumber: 2.3 Consensus size: 43
14375560 AATTTGAGAT
* *
14375570 TTACGTGTAAGACCATGTCTAGGACATAGGCATCG-TATCTG-A
1 TTACATGTAAGACCATGTCTAGGACAGAGGCATCGATA-CTGAA
* * *
14375612 TTTCATGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGAA
1 TTACATGTAAGACCATGTCTAGGACAGAGGCATCGATACTGAA
14375655 TTACATGTAAGACCA
1 TTACATGTAAGACCA
14375670 CGTCCGGGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.67
43 16 0.33
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACAGAGGCATCGATACTGAA
Found at i:14384551 original size:65 final size:65
Alignment explanation
Indices: 14384447--14384583 Score: 247
Period size: 65 Copynumber: 2.1 Consensus size: 65
14384437 CAAGGTGGAG
*
14384447 ATTTGTTGAGTGTGCTACGTATTTCAGTCAAATTTGAAAGATAATCTCCCAGTTAAACTATGTTT
1 ATTTGTTGAGTGTGATACGTATTTCAGTCAAATTTGAAAGATAATCTCCCAGTTAAACTATGTTT
**
14384512 ATTTGTTGAGTGTGATACGTATTTCAGTCAAATTTGAAAGATAATCTCTTAGTTAAACTATGTTT
1 ATTTGTTGAGTGTGATACGTATTTCAGTCAAATTTGAAAGATAATCTCCCAGTTAAACTATGTTT
14384577 ATTTGTT
1 ATTTGTT
14384584 TCAGTCGAAC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 69 1.00
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (65 bp):
ATTTGTTGAGTGTGATACGTATTTCAGTCAAATTTGAAAGATAATCTCCCAGTTAAACTATGTTT
Found at i:14385336 original size:19 final size:18
Alignment explanation
Indices: 14385314--14385349 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14385304 TATATATTTT
14385314 AATTAATAAAAGAAATTAA
1 AATT-ATAAAAGAAATTAA
*
14385333 AATTATTAAAGAAATTA
1 AATTATAAAAGAAATTA
14385350 GATTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.06, T:0.31
Consensus pattern (18 bp):
AATTATAAAAGAAATTAA
Found at i:14385721 original size:16 final size:16
Alignment explanation
Indices: 14385700--14385733 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14385690 TGGAGCCGAC
14385700 AAGTTAGAGGAACCAA
1 AAGTTAGAGGAACCAA
**
14385716 AAGTTAGATTAACCAA
1 AAGTTAGAGGAACCAA
14385732 AA
1 AA
14385734 AAAGAATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.12, G:0.18, T:0.18
Consensus pattern (16 bp):
AAGTTAGAGGAACCAA
Found at i:14390100 original size:17 final size:18
Alignment explanation
Indices: 14390062--14390103 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
14390052 GAGTCATCAA
14390062 TTTTTTAGTATTTTTAAG
1 TTTTTTAGTATTTTTAAG
*
14390080 TTTTTTA-T-TTTTCTAAT
1 TTTTTTAGTATTTT-TAAG
14390097 TTTTTTA
1 TTTTTTA
14390104 AATTTGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 4 0.18
17 11 0.50
18 7 0.32
ACGTcount: A:0.19, C:0.02, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTTTTAGTATTTTTAAG
Found at i:14390127 original size:22 final size:21
Alignment explanation
Indices: 14390096--14390147 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
14390086 ATTTTTCTAA
*
14390096 TTTTTT-TAAATTTGAATACT
1 TTTTTTATAAATTTGAATAAT
*
14390116 TTTTTTCATAAATTTTAATAAT
1 TTTTTT-ATAAATTTGAATAAT
14390138 TTTTTTATAA
1 TTTTTTATAA
14390148 TCCTCTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 6 0.21
21 4 0.14
22 18 0.64
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTTTTATAAATTTGAATAAT
Found at i:14393634 original size:6 final size:6
Alignment explanation
Indices: 14393623--14393662 Score: 71
Period size: 6 Copynumber: 6.7 Consensus size: 6
14393613 TAGGTTTCCA
*
14393623 AAATAG AAATAG AAATAG AACTAG AAATAG AAATAG AAAT
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAAT
14393663 GATTCATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.65, C:0.03, G:0.15, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:14408675 original size:25 final size:24
Alignment explanation
Indices: 14408633--14408689 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
14408623 TTTAATTTAT
*
14408633 AAAATTAATAATTCAATAAACTGA
1 AAAATTAATAATTCAATAAAATGA
* *
14408657 AAAATTAACTAATTGAATAAAATTA
1 AAAATTAA-TAATTCAATAAAATGA
14408682 AAAATTAA
1 AAAATTAA
14408690 GAGAAACTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 8 0.28
25 21 0.72
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAATTAATAATTCAATAAAATGA
Found at i:14409355 original size:22 final size:23
Alignment explanation
Indices: 14409330--14409381 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
14409320 AATTCTATGC
14409330 TAAATTAATAA-AGAT-TAATATA
1 TAAATTAATAATAGATATAAT-TA
14409352 TAAATT-ATAATAGATATAATTA
1 TAAATTAATAATAGATATAATTA
*
14409374 TATATTAA
1 TAAATTAA
14409382 AGATTATCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 4 0.15
22 17 0.65
23 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
TAAATTAATAATAGATATAATTA
Found at i:14420409 original size:58 final size:59
Alignment explanation
Indices: 14420291--14420452 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
14420281 GTGACGAGAT
* *
14420291 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATA
***
14420349 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATA
* ** * **
14420407 TGGCACTGTGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 TGGCACTGAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
14420453 AATCGAGTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 86 0.95
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (59 bp):
TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATA
Found at i:14420413 original size:29 final size:29
Alignment explanation
Indices: 14420291--14420392 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
14420281 GTGACGAGAT
14420291 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
14420320 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
14420349 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14420378 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
14420393 GAGCTCGAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:14427965 original size:58 final size:59
Alignment explanation
Indices: 14427847--14428008 Score: 195
Period size: 58 Copynumber: 2.8 Consensus size: 59
14427837 GTGACGAGAT
* *
14427847 TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGC-ATGCTGGAAAAATA
1 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATA
***
14427905 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATA
* ** * **
14427963 TGGCACTGTGTGTGCGGGCT-TAAATCGCATGGCACTAAGTGTGCGA
1 TGGCACTGAGTGTGCATGCTGGAAAT-ATATGGCACTAAGTGTGCGA
14428009 AATCGAGTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
57 4 0.04
58 86 0.95
59 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (59 bp):
TGGCACTGAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCGATGCTCGAAAAATA
Found at i:14427969 original size:29 final size:29
Alignment explanation
Indices: 14427847--14427948 Score: 186
Period size: 29 Copynumber: 3.5 Consensus size: 29
14427837 GTGACGAGAT
14427847 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
14427876 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
14427905 TGGCACTGAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
14427934 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
14427949 GAGCTCGAAG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 69 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:14428046 original size:2 final size:2
Alignment explanation
Indices: 14428041--14428071 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14428031 GTGCGTACTC
14428041 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14428072 CCGATCGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14430984 original size:278 final size:278
Alignment explanation
Indices: 14430487--14431043 Score: 1096
Period size: 278 Copynumber: 2.0 Consensus size: 278
14430477 TTTTATATCT
14430487 GCTAGAGGTAGGTAAAACACCGTGTTTTAGCAAAATACCTATAAGGACACAAACTGTTTTAAAAA
1 GCTAGAGGTAGGTAAAACACCGTGTTTTAGCAAAATACCTATAAGGACACAAACTGTTTTAAAAA
*
14430552 GCTTCTGCAACGTATAATGTTTTGAAAACTAATGACTAAATTAACACCATGACTTTGGAAATGAA
66 GCTTCTGCAACGTATAATGTTTTGAAAACTAATGACTAAATCAACACCATGACTTTGGAAATGAA
14430617 TAAAAGATAATGACGAGTTCTAAACGGAAAATGTTTTAAGCTAAGTTACGGTTATTTAACACAAG
131 TAAAAGATAATGACGAGTTCTAAACGGAAAATGTTTTAAGCTAAGTTACGGTTATTTAACACAAG
14430682 CTACAGTTTCCAAACACACTATCATGCGACATCGCTAGATTCGGCCATAACGTCTAGGCCGAGTT
196 CTACAGTTTCCAAACACACTATCATGCGACATCGCTAGATTCGGCCATAACGTCTAGGCCGAGTT
*
14430747 TGGGGTGTTACATGATCG
261 TGGAGTGTTACATGATCG
14430765 GCTAGAGGTAGGTAAAACACCGTGTTTTAGCAAAATACCTATAAGGACACAAACTGTTTTAAAAA
1 GCTAGAGGTAGGTAAAACACCGTGTTTTAGCAAAATACCTATAAGGACACAAACTGTTTTAAAAA
14430830 GCTTCTGCAACGTATAATGTTTTGAAAACTAATGACTAAATCAACACCATGACTTTGGAAATGAA
66 GCTTCTGCAACGTATAATGTTTTGAAAACTAATGACTAAATCAACACCATGACTTTGGAAATGAA
14430895 TAAAAGATAATGACGAGTTCTAAACGGAAAATGTTTTAAGCTAAGTTACGGTTATTTAACACAAG
131 TAAAAGATAATGACGAGTTCTAAACGGAAAATGTTTTAAGCTAAGTTACGGTTATTTAACACAAG
14430960 CTACAGTTTCCAAACACACTATCATGCGACATCGCTAGATTCGGCCATAACGTCTAGGCCGAGTT
196 CTACAGTTTCCAAACACACTATCATGCGACATCGCTAGATTCGGCCATAACGTCTAGGCCGAGTT
14431025 TGGAGTGTTACATGATCG
261 TGGAGTGTTACATGATCG
14431043 G
1 G
14431044 TTATTAAATA
Statistics
Matches: 277, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
278 277 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (278 bp):
GCTAGAGGTAGGTAAAACACCGTGTTTTAGCAAAATACCTATAAGGACACAAACTGTTTTAAAAA
GCTTCTGCAACGTATAATGTTTTGAAAACTAATGACTAAATCAACACCATGACTTTGGAAATGAA
TAAAAGATAATGACGAGTTCTAAACGGAAAATGTTTTAAGCTAAGTTACGGTTATTTAACACAAG
CTACAGTTTCCAAACACACTATCATGCGACATCGCTAGATTCGGCCATAACGTCTAGGCCGAGTT
TGGAGTGTTACATGATCG
Found at i:14438187 original size:41 final size:41
Alignment explanation
Indices: 14438142--14438259 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
14438132 TGAAAGATAA
14438142 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
14438183 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
14438213 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
14438254 ATGTAG
1 ATGTAG
14438260 ATAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:14438198 original size:71 final size:71
Alignment explanation
Indices: 14438110--14438273 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
14438100 GAGATGTATC
14438110 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14438175 AGGACA
66 AGGACA
14438181 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
14438246 AGGACA
66 AGGACA
*
14438252 CCATGTAGATAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
14438274 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:14443306 original size:61 final size:61
Alignment explanation
Indices: 14443212--14443334 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
14443202 ATGCAATCAT
*
14443212 ATCATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTTGGATTTTGTGGTCCCAAA
1 ATCATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGGATTTTGTGGTCCCAAA
14443273 ATCATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGGATTTTGTGGTCCCAAA
1 ATCATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGGATTTTGTGGTCCCAAA
14443334 A
1 A
14443335 CCTCTGTTCC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (61 bp):
ATCATAGACCTCAAAATAATCATAAAATAATTATTTCTATCTCGGATTTTGTGGTCCCAAA
Found at i:14444030 original size:22 final size:23
Alignment explanation
Indices: 14443988--14444030 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14443978 AATGATACTT
14443988 ATTTACATAAATGATTGGTTGAA
1 ATTTACATAAATGATTGGTTGAA
* *
14444011 ATTTACA-AAATTATTTGTTG
1 ATTTACATAAATGATTGGTTG
14444031 TTGCTCCGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (23 bp):
ATTTACATAAATGATTGGTTGAA
Found at i:14445463 original size:17 final size:16
Alignment explanation
Indices: 14445426--14445463 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
14445416 GATTTTAAAA
14445426 TAATTTTAATAATTTT
1 TAATTTTAATAATTTT
*
14445442 T-ATTTTTATATATTTT
1 TAATTTTAATA-ATTTT
14445458 TAATTT
1 TAATTT
14445464 ATTAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 7 0.37
17 4 0.21
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TAATTTTAATAATTTT
Found at i:14457592 original size:20 final size:22
Alignment explanation
Indices: 14457547--14457594 Score: 64
Period size: 20 Copynumber: 2.2 Consensus size: 22
14457537 TTTTAAGTTT
*
14457547 TTTTATTTGTCCTTATTTATTTA
1 TTTTATTTGT-CTTATTTATTGA
14457570 TTTTATTTGT-TTA-TTATTGA
1 TTTTATTTGTCTTATTTATTGA
14457590 TTTTA
1 TTTTA
14457595 AAAAATTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 11 0.46
21 3 0.12
23 10 0.42
ACGTcount: A:0.19, C:0.04, G:0.06, T:0.71
Consensus pattern (22 bp):
TTTTATTTGTCTTATTTATTGA
Found at i:14457659 original size:21 final size:21
Alignment explanation
Indices: 14457596--14457702 Score: 121
Period size: 21 Copynumber: 5.1 Consensus size: 21
14457586 TTGATTTTAA
* * * *
14457596 AAAATTTGAAATGTATATTTA
1 AAAATTTTAAATATATTTTTT
14457617 AAATATTTTATAATATTATTTTTT
1 AAA-ATTTTA-AATA-TATTTTTT
14457641 AAAATTTTAAATATATTTTTT
1 AAAATTTTAAATATATTTTTT
14457662 --AA-TTTAAATATATTTTTT
1 AAAATTTTAAATATATTTTTT
*
14457680 AAAATTTTAAAAATATTTTTT
1 AAAATTTTAAATATATTTTTT
14457701 AA
1 AA
14457703 TAATATAAAA
Statistics
Matches: 75, Mismatches: 5, Indels: 12
0.82 0.05 0.13
Matches are distributed among these distances:
18 16 0.21
19 2 0.03
20 2 0.03
21 28 0.37
22 9 0.12
23 9 0.12
24 9 0.12
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
AAAATTTTAAATATATTTTTT
Found at i:14457678 original size:39 final size:41
Alignment explanation
Indices: 14457623--14457703 Score: 139
Period size: 39 Copynumber: 2.0 Consensus size: 41
14457613 TTTAAAATAT
*
14457623 TTTATAATATTATTTTTTAAAATTTTAAATATATTTTTTAA
1 TTTATAATATTATTTTTTAAAATTTTAAAAATATTTTTTAA
14457664 TTTA-AATA-TATTTTTTAAAATTTTAAAAATATTTTTTAA
1 TTTATAATATTATTTTTTAAAATTTTAAAAATATTTTTTAA
14457703 T
1 T
14457704 AATATAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
39 31 0.79
40 4 0.10
41 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (41 bp):
TTTATAATATTATTTTTTAAAATTTTAAAAATATTTTTTAA
Found at i:14457726 original size:39 final size:38
Alignment explanation
Indices: 14457638--14457734 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 38
14457628 AATATTATTT
* * * *
14457638 TTTAAAATTTTAAATATATTTTTTAATTTAAATATATTT
1 TTTAAAATTTTAAAAATATTTTTTAA-TTAAATAAAATA
14457677 TTTAAAATTTTAAAAATATTTTTTAA-TAATATAAAATA
1 TTTAAAATTTTAAAAATATTTTTTAATTAA-ATAAAATA
*
14457715 TTTAAATATTTTAAAGATAT
1 TTTAAA-ATTTTAAAAATAT
14457735 GAACTTTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
37 3 0.06
38 11 0.22
39 37 0.73
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (38 bp):
TTTAAAATTTTAAAAATATTTTTTAATTAAATAAAATA
Found at i:14457787 original size:10 final size:10
Alignment explanation
Indices: 14457774--14457837 Score: 66
Period size: 10 Copynumber: 6.7 Consensus size: 10
14457764 ATATTTTAAA
14457774 TTTTAAATTT
1 TTTTAAATTT
14457784 TTTT-AATTT
1 TTTTAAATTT
14457793 GTTTTATAA-TT
1 -TTTTA-AATTT
14457804 TTTTAAA--T
1 TTTTAAATTT
14457812 TTTT-AATTT
1 TTTTAAATTT
*
14457821 TTTTTAATTT
1 TTTTAAATTT
14457831 TTTTAAA
1 TTTTAAA
14457838 ATATATTATT
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
7 2 0.04
8 5 0.11
9 12 0.26
10 24 0.51
11 2 0.04
12 2 0.04
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:14457791 original size:9 final size:9
Alignment explanation
Indices: 14457774--14457836 Score: 65
Period size: 9 Copynumber: 6.8 Consensus size: 9
14457764 ATATTTTAAA
*
14457774 TTTTAAATT
1 TTTTTAATT
14457783 TTTTTAATT
1 TTTTTAATT
*
14457792 TGTTTTATAAT
1 T-TTTTA-ATT
*
14457803 TTTTTAA-A
1 TTTTTAATT
14457811 TTTTTAATTT
1 TTTTTAA-TT
14457821 TTTTTAATT
1 TTTTTAATT
14457830 TTTTTAA
1 TTTTTAA
14457837 AATATATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
8 7 0.15
9 19 0.41
10 17 0.37
11 3 0.07
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (9 bp):
TTTTTAATT
Found at i:14457808 original size:37 final size:37
Alignment explanation
Indices: 14457757--14457853 Score: 128
Period size: 37 Copynumber: 2.7 Consensus size: 37
14457747 TTATTATTAA
14457757 TTTTATAATATTTTAAA-TTTTAAATTTTTTTAATTT
1 TTTTATAATATTTTAAATTTTTAAATTTTTTTAATTT
* *
14457793 GTTTTATAATTTTTTAAATTTTTAATTTTTTTTAATTT
1 -TTTTATAATATTTTAAATTTTTAAATTTTTTTAATTT
* *
14457831 TTTTAAAATATATT--ATTTTTAAA
1 TTTTATAATATTTTAAATTTTTAAA
14457854 GATATGACCT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
35 8 0.15
37 27 0.51
38 18 0.34
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (37 bp):
TTTTATAATATTTTAAATTTTTAAATTTTTTTAATTT
Found at i:14457823 original size:8 final size:8
Alignment explanation
Indices: 14457753--14457833 Score: 54
Period size: 8 Copynumber: 9.2 Consensus size: 8
14457743 AAATTTATTA
14457753 TTAATTTT
1 TTAATTTT
* *
14457761 ATAATATT
1 TTAATTTT
*
14457769 TTAAATTT
1 TTAATTTT
*
14457777 TAAATTTTT
1 TTAA-TTTT
14457786 TTAATTTGTTT
1 TTAA--T-TTT
14457797 TATAATTTT
1 T-TAATTTT
*
14457806 TTAAATTT
1 TTAATTTT
14457814 TTAATTTTTT
1 TTAA--TTTT
14457824 TTAATTTT
1 TTAATTTT
14457832 TT
1 TT
14457834 TAAAATATAT
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
8 30 0.53
9 10 0.18
10 10 0.18
11 4 0.07
12 3 0.05
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (8 bp):
TTAATTTT
Found at i:14457898 original size:28 final size:26
Alignment explanation
Indices: 14457867--14457937 Score: 70
Period size: 29 Copynumber: 2.5 Consensus size: 26
14457857 ATGACCTTTC
14457867 AAATTTATTATTTATTTTATAATATTTT
1 AAATTTATT-TTTATTTTATAA-ATTTT
* *
14457895 AAATGTATATTTTAAATTTTTTAAATTTT
1 AAAT-T-TATTTT-TATTTTATAAATTTT
*
14457924 AAATATATTTTTAT
1 AAATTTATTTTTAT
14457938 AAATTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
26 2 0.06
27 6 0.17
28 4 0.11
29 12 0.33
30 12 0.33
ACGTcount: A:0.38, C:0.00, G:0.01, T:0.61
Consensus pattern (26 bp):
AAATTTATTTTTATTTTATAAATTTT
Found at i:14457941 original size:30 final size:29
Alignment explanation
Indices: 14457880--14457961 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
14457870 TTTATTATTT
* * *
14457880 ATTTTATAATATTTTAAATGTATATTTTAA
1 ATTTTTTAA-ATTTTAAATATATTTTTTAA
14457910 ATTTTTTAAATTTTAAATATATTTTTATAA
1 ATTTTTTAAATTTTAAATATATTTTT-TAA
* * *
14457940 A-TTATTAATTTTTAAAGATATT
1 ATTTTTTAAATTTTAAATATATT
14457962 CAAACTTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
29 33 0.73
30 12 0.27
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (29 bp):
ATTTTTTAAATTTTAAATATATTTTTTAA
Found at i:14464188 original size:20 final size:20
Alignment explanation
Indices: 14464134--14464187 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
14464124 TGACTAGTTA
14464134 TAATATATATTTTTAATTTT
1 TAATATATATTTTTAATTTT
* * *
14464154 TAATTTAAATTTTTACTTTTT
1 TAATATATATTTTTA-ATTTT
14464175 TAATATATATTTT
1 TAATATATATTTT
14464188 AAATAAATTC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TAATATATATTTTTAATTTT
Found at i:14464284 original size:20 final size:19
Alignment explanation
Indices: 14464252--14464290 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
14464242 TAATTAATTC
14464252 AAAATTTATTTTTTTGAAAT
1 AAAATTTATTTTTTT-AAAT
14464272 AAAATATTA-TTTTTTAAAT
1 AAAAT-TTATTTTTTTAAAT
14464291 TTTAAATAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 11 0.61
21 3 0.17
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
AAAATTTATTTTTTTAAAT
Found at i:14471740 original size:23 final size:23
Alignment explanation
Indices: 14471714--14471759 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14471704 AGAGCTCACT
* *
14471714 TGAAAGAGGAAAAAGAAGAAAAA
1 TGAAAGAAGAAAAAAAAGAAAAA
*
14471737 TGAAGGAAGAAAAAAAAGAAAAA
1 TGAAAGAAGAAAAAAAAGAAAAA
14471760 AAAAACAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.24, T:0.04
Consensus pattern (23 bp):
TGAAAGAAGAAAAAAAAGAAAAA
Found at i:14475772 original size:23 final size:20
Alignment explanation
Indices: 14475737--14475778 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 20
14475727 AAAATATTTT
14475737 TATATAAATTTAATTATAAAC
1 TATATAAATTTAA-TATAAAC
14475758 TATATAAAATATTAATATAAA
1 TATAT-AAAT-TTAATATAAA
14475779 ATACTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
TATATAAATTTAATATAAAC
Found at i:14478428 original size:60 final size:60
Alignment explanation
Indices: 14478335--14478455 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
14478325 TTGATAAAAG
14478335 CTTATATGACATATACCTTTAAAAATTAAACAAATTGGTTTTAAGAATGTTCAATTAAGC
1 CTTATATGACATATACCTTTAAAAATTAAACAAATTGGTTTTAAGAATGTTCAATTAAGC
14478395 CTTATATGACATATACCTTTAAAAATTAAACAAATTGGTTTTAAGAATGTTCAATTAAGC
1 CTTATATGACATATACCTTTAAAAATTAAACAAATTGGTTTTAAGAATGTTCAATTAAGC
14478455 C
1 C
14478456 AACAAATAAC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.36
Consensus pattern (60 bp):
CTTATATGACATATACCTTTAAAAATTAAACAAATTGGTTTTAAGAATGTTCAATTAAGC
Found at i:14480082 original size:14 final size:15
Alignment explanation
Indices: 14480063--14480100 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
14480053 GTTTGCCAGT
*
14480063 AAAATATTTTCT-GA
1 AAAATAATTTCTAGA
14480077 AAAATAATTTCTAG-
1 AAAATAATTTCTAGA
14480091 AAAATAATTT
1 AAAATAATTT
14480101 ATTTTTCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 21 0.95
15 1 0.05
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.39
Consensus pattern (15 bp):
AAAATAATTTCTAGA
Found at i:14485972 original size:25 final size:25
Alignment explanation
Indices: 14485935--14485982 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14485925 AAGCTAGAAG
14485935 ATGAAAAAGGAAGAAGGA-AAAGGA
1 ATGAAAAAGGAAGAAGGAGAAAGGA
*
14485959 ATGAAGAACGGAAGAAGGAGAAAG
1 ATGAA-AAAGGAAGAAGGAGAAAG
14485983 ACTTACCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 12 0.57
26 4 0.19
ACGTcount: A:0.58, C:0.02, G:0.35, T:0.04
Consensus pattern (25 bp):
ATGAAAAAGGAAGAAGGAGAAAGGA
Found at i:14504079 original size:22 final size:22
Alignment explanation
Indices: 14504054--14504098 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
14504044 CACCATATGA
*
14504054 CATTTTCATTTAATTGTAAAAC
1 CATTTTCATTCAATTGTAAAAC
*
14504076 CATTTTCCTTCAATTGTAAAAC
1 CATTTTCATTCAATTGTAAAAC
14504098 C
1 C
14504099 TTTAGGTTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.42
Consensus pattern (22 bp):
CATTTTCATTCAATTGTAAAAC
Found at i:14510775 original size:10 final size:10
Alignment explanation
Indices: 14510740--14510790 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
14510730 TAAAATTCTA
14510740 AAAGATAAAT
1 AAAGATAAAT
*
14510750 AATAAATAAAT
1 AA-AGATAAAT
* *
14510761 GAAGATAATT
1 AAAGATAAAT
14510771 AAAGATAAAT
1 AAAGATAAAT
14510781 AAAGATAAAT
1 AAAGATAAAT
14510791 GAAATTAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
10 26 0.76
11 8 0.24
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.24
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:14510799 original size:20 final size:20
Alignment explanation
Indices: 14510740--14510800 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
14510730 TAAAATTCTA
14510740 AAAGATAAATAATAAATAAAT
1 AAAGATAAATAA-AAATAAAT
* * *
14510761 GAAGATAATTAAAGATAAAT
1 AAAGATAAATAAAAATAAAT
* *
14510781 AAAGATAAATGAAATTAAAT
1 AAAGATAAATAAAAATAAAT
14510801 CCTAAAATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
20 22 0.69
21 10 0.31
ACGTcount: A:0.66, C:0.00, G:0.10, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAAATAAAT
Found at i:14519903 original size:15 final size:15
Alignment explanation
Indices: 14519883--14519912 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14519873 TGTTGTATGA
14519883 TAGTTATTCATCGAG
1 TAGTTATTCATCGAG
14519898 TAGTTATTCATCGAG
1 TAGTTATTCATCGAG
14519913 ATACTATAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (15 bp):
TAGTTATTCATCGAG
Found at i:14528947 original size:5 final size:5
Alignment explanation
Indices: 14528937--14528967 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
14528927 TTACTTTTTC
14528937 TTTAA TTTAA TTTAA TTTAA TTTAA TATTAA
1 TTTAA TTTAA TTTAA TTTAA TTTAA T-TTAA
14528968 ATGTAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.84
6 4 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TTTAA
Found at i:14535724 original size:49 final size:49
Alignment explanation
Indices: 14535664--14535968 Score: 465
Period size: 49 Copynumber: 6.3 Consensus size: 49
14535654 GTATGAGATA
14535664 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
14535713 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
14535762 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
14535811 TATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * *
14535858 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
* * * * * * *
14535907 TATATATGTGATAGGGCCGAGTGGCCAAAGTGATGGATGTGGAA--GTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
*
14535954 TATAAATGTGATAAG
1 TATATATGTGATAAG
14535969 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 19, Indels: 6
0.90 0.07 0.02
Matches are distributed among these distances:
47 59 0.25
49 176 0.75
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
Found at i:14535891 original size:96 final size:96
Alignment explanation
Indices: 14535664--14535968 Score: 475
Period size: 96 Copynumber: 3.2 Consensus size: 96
14535654 GTATGAGATA
14535664 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
14535729 CCTAATGGCCGATGTGATGAATGTGAAAGTGTG
66 CCTAATGGCCGATGTGATGAATGTGAAA--GTG
*
14535762 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
14535827 CCTAATGGCCGATGTGATAAATGTGAAAGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
14535858 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGAAGGTGTATATATATGTGATAGGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
* * * * * *
14535923 CCGAGTGGCCAAAGTGATGGATGTGGAAGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG
*
14535954 TATAAATGTGATAAG
1 TATATATGTGATAAG
14535969 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
96 101 0.53
98 91 0.47
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:14561424 original size:2 final size:2
Alignment explanation
Indices: 14561419--14561458 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
14561409 TGTGTGTGTG
14561419 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14561459 AAGGAAATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14562725 original size:18 final size:18
Alignment explanation
Indices: 14562702--14562768 Score: 80
Period size: 18 Copynumber: 3.7 Consensus size: 18
14562692 TATTAAAGAC
* *
14562702 TGACTGCTACTGAATAAT
1 TGACTGTTACTGAATAAA
*
14562720 TGACTGTTACTGAGTAAA
1 TGACTGTTACTGAATAAA
* *
14562738 CGACTGATACTGAATAAA
1 TGACTGTTACTGAATAAA
*
14562756 TGATTGTTACTGA
1 TGACTGTTACTGA
14562769 TTAACCTATT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (18 bp):
TGACTGTTACTGAATAAA
Found at i:14568472 original size:29 final size:28
Alignment explanation
Indices: 14568418--14568472 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
14568408 TGAGTAAAAT
* **
14568418 GGACTAAATTGTGAAATTTATAAATGAG
1 GGACTAAAATGTGAAATAAATAAATGAG
14568446 GGACTAAAATGTGAAATAAATGAAATG
1 GGACTAAAATGTGAAATAAAT-AAATG
14568473 TGTGAACTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (28 bp):
GGACTAAAATGTGAAATAAATAAATGAG
Found at i:14570076 original size:19 final size:19
Alignment explanation
Indices: 14570052--14570089 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14570042 TGACTTGTAG
14570052 TTGTTTGAAAAATGTTTAA
1 TTGTTTGAAAAATGTTTAA
14570071 TTGTTTGAAAAATGTTTAA
1 TTGTTTGAAAAATGTTTAA
14570090 GTTTTGGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (19 bp):
TTGTTTGAAAAATGTTTAA
Found at i:14570095 original size:18 final size:19
Alignment explanation
Indices: 14570053--14570095 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
14570043 GACTTGTAGT
*
14570053 TGTTTGAAAAATGTTTAAT
1 TGTTTGAAAAATGTTTAAG
14570072 TGTTTGAAAAATGTTTAAG
1 TGTTTGAAAAATGTTTAAG
14570091 T-TTTG
1 TGTTTG
14570096 GGAAAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.49
Consensus pattern (19 bp):
TGTTTGAAAAATGTTTAAG
Found at i:14570101 original size:19 final size:19
Alignment explanation
Indices: 14570052--14570103 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
14570042 TGACTTGTAG
*
14570052 TTGTTTGAAAAATGTTTAA
1 TTGTTGGAAAAATGTTTAA
*
14570071 TTGTTTGAAAAATGTTTAA
1 TTGTTGGAAAAATGTTTAA
14570090 GTT-TTGGGAAAAAT
1 -TTGTT-GGAAAAAT
14570104 TTGTATGTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 21 0.70
20 9 0.30
ACGTcount: A:0.37, C:0.00, G:0.19, T:0.44
Consensus pattern (19 bp):
TTGTTGGAAAAATGTTTAA
Found at i:14577015 original size:23 final size:23
Alignment explanation
Indices: 14576984--14577028 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14576974 CATGTTATAC
* *
14576984 CTAGCATGAATATCTGATCTGTT
1 CTAGAATGAATATATGATCTGTT
*
14577007 CTAGAATGAATGTATGATCTGT
1 CTAGAATGAATATATGATCTGT
14577029 CTTTTTGCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (23 bp):
CTAGAATGAATATATGATCTGTT
Found at i:14577286 original size:39 final size:39
Alignment explanation
Indices: 14577176--14577290 Score: 176
Period size: 40 Copynumber: 2.9 Consensus size: 39
14577166 ACAGTACCTC
*
14577176 ATGGTGTGTAGGGATGGATGGGTCGATTTTATCCCCTTAT
1 ATGGTGTGCAGGGATGG-TGGGTCGATTTTATCCCCTTAT
*
14577216 ATGGTGTGCAGGGATGGGTGGGTCGATTTTATCCTCTTAT
1 ATGGTGTGCAGGGAT-GGTGGGTCGATTTTATCCCCTTAT
* *
14577256 ATGGTGTGCAGGGGTGGTGGGTCAATTTTATCCCC
1 ATGGTGTGCAGGGATGGTGGGTCGATTTTATCCCC
14577291 ACATAGTGTG
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 18 0.26
40 49 0.71
41 2 0.03
ACGTcount: A:0.16, C:0.14, G:0.35, T:0.36
Consensus pattern (39 bp):
ATGGTGTGCAGGGATGGTGGGTCGATTTTATCCCCTTAT
Found at i:14584460 original size:40 final size:40
Alignment explanation
Indices: 14584390--14584467 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
14584380 TGCAGTACTT
*
14584390 TATAGTGTGTAGGGATAGATGGATCAATTTTATCCCCATA
1 TATAGTGTGTAAGGATAGATGGATCAATTTTATCCCCATA
* * * *
14584430 TATAGTGTGTAAGGATGGGTGGGTCGATTTTATCCCCA
1 TATAGTGTGTAAGGATAGATGGATCAATTTTATCCCCA
14584468 CATGGTGTGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.35
Consensus pattern (40 bp):
TATAGTGTGTAAGGATAGATGGATCAATTTTATCCCCATA
Found at i:14586168 original size:5 final size:5
Alignment explanation
Indices: 14586158--14586190 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
14586148 CTATGTGTTC
14586158 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
14586191 TACAATAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:14587274 original size:15 final size:15
Alignment explanation
Indices: 14587233--14587303 Score: 54
Period size: 15 Copynumber: 4.7 Consensus size: 15
14587223 TTTATATACT
*
14587233 TTTAATT-AAATCTA
1 TTTAATTAAAATTTA
* * *
14587247 ATTAATCATAATTTA
1 TTTAATTAAAATTTA
14587262 TTTAATTAAAATTTA
1 TTTAATTAAAATTTA
** *
14587277 AATAATTAAAAATTAA
1 TTTAATT-AAAATTTA
14587293 TTATAATTAAA
1 TT-TAATTAAA
14587304 CAATTTAGTG
Statistics
Matches: 42, Mismatches: 12, Indels: 4
0.72 0.21 0.07
Matches are distributed among these distances:
14 5 0.12
15 22 0.52
16 10 0.24
17 5 0.12
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
TTTAATTAAAATTTA
Found at i:14590921 original size:12 final size:12
Alignment explanation
Indices: 14590892--14590930 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
14590882 AACATTTTCA
14590892 TAAT-AAAATAT
1 TAATAAAAATAT
14590903 TAATAAAAAT-T
1 TAATAAAAATAT
*
14590914 TAATTAAAATAT
1 TAATAAAAATAT
14590926 TAATA
1 TAATA
14590931 TTATAATAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATAAAAATAT
Found at i:14593173 original size:22 final size:21
Alignment explanation
Indices: 14593129--14593179 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
14593119 TTCAGTTTAC
*
14593129 AATTTTTTTTTTCACATTAAT
1 AATTTTTTTTTTAACATTAAT
14593150 AATTCTTTTTATTTAACATT-AT
1 AATT-TTTTT-TTTAACATTAAT
14593172 AATTTTTT
1 AATTTTTT
14593180 ACATACTAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
22 11 0.41
23 8 0.30
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (21 bp):
AATTTTTTTTTTAACATTAAT
Found at i:14602942 original size:44 final size:44
Alignment explanation
Indices: 14602879--14602968 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
14602869 CGCCAACAGG
14602879 TATGTTGCTACTTGCAATAAATGCCAACGAACAGGTAATATCTC
1 TATGTTGCTACTTGCAATAAATGCCAACGAACAGGTAATATCTC
14602923 TATGTTGCTACTTGCAATAAATGCCAACGAACAGGTAATATCTC
1 TATGTTGCTACTTGCAATAAATGCCAACGAACAGGTAATATCTC
14602967 TA
1 TA
14602969 AACGTGACGA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (44 bp):
TATGTTGCTACTTGCAATAAATGCCAACGAACAGGTAATATCTC
Found at i:14608956 original size:30 final size:30
Alignment explanation
Indices: 14608921--14608978 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
14608911 TAGGCACTTC
**
14608921 CACACGGGTAGTCCACATGCCCGTGTGTGA
1 CACACGGGTAAACCACATGCCCGTGTGTGA
14608951 CACACGGGTAAACCACATGCCCGTGTGT
1 CACACGGGTAAACCACATGCCCGTGTGT
14608979 CATGGCTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGGTAAACCACATGCCCGTGTGTGA
Found at i:14611861 original size:9 final size:9
Alignment explanation
Indices: 14611847--14611871 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14611837 AACCATTCAA
14611847 TCATTCATT
1 TCATTCATT
14611856 TCATTCATT
1 TCATTCATT
14611865 TCATTCA
1 TCATTCA
14611872 ACTTAATCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (9 bp):
TCATTCATT
Found at i:14615841 original size:2 final size:2
Alignment explanation
Indices: 14615836--14615864 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14615826 CTAAGTGCCA
14615836 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14615865 GCCGAAGCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14615894 original size:15 final size:15
Alignment explanation
Indices: 14615874--14615904 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14615864 AGCCGAAGCT
14615874 ATCTCGATCTCACAC
1 ATCTCGATCTCACAC
*
14615889 ATCTCGATTTCACAC
1 ATCTCGATCTCACAC
14615904 A
1 A
14615905 CTAACTGCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.35, G:0.06, T:0.29
Consensus pattern (15 bp):
ATCTCGATCTCACAC
Found at i:14617417 original size:2 final size:2
Alignment explanation
Indices: 14617410--14617443 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14617400 ATATTATTAC
14617410 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14617444 GTGCACATAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14617664 original size:13 final size:13
Alignment explanation
Indices: 14617646--14617681 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
14617636 ATATCTCTAT
14617646 AAATATTTACTAA
1 AAATATTTACTAA
14617659 AAATATTTACTAA
1 AAATATTTACTAA
14617672 AAATATTTAC
1 AAATATTTAC
14617682 GGACCCGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (13 bp):
AAATATTTACTAA
Found at i:14626006 original size:5 final size:5
Alignment explanation
Indices: 14625996--14626029 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
14625986 AAGAATTAAG
14625996 TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
14626030 ATAAAAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:14626798 original size:24 final size:24
Alignment explanation
Indices: 14626771--14626817 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14626761 ATTGAAATGG
14626771 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
14626795 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
14626818 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:14626839 original size:13 final size:13
Alignment explanation
Indices: 14626821--14626845 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14626811 TTGAATTGGT
14626821 ATATATATATTGA
1 ATATATATATTGA
14626834 ATATATATATTG
1 ATATATATATTG
14626846 GTTATTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
ATATATATATTGA
Found at i:14628534 original size:13 final size:13
Alignment explanation
Indices: 14628516--14628540 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14628506 GTAAGTGATT
14628516 TTGATGATTTTTC
1 TTGATGATTTTTC
14628529 TTGATGATTTTT
1 TTGATGATTTTT
14628541 ACATTTTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTGATGATTTTTC
Found at i:14630482 original size:13 final size:13
Alignment explanation
Indices: 14630464--14630499 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
14630454 GCCGTGTCAG
14630464 GGACACGGGCCAT
1 GGACACGGGCCAT
* *
14630477 GGACACGAGCTAT
1 GGACACGGGCCAT
14630490 GGACACGGGC
1 GGACACGGGC
14630500 GTGTGATAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.25, C:0.28, G:0.39, T:0.08
Consensus pattern (13 bp):
GGACACGGGCCAT
Found at i:14637130 original size:47 final size:46
Alignment explanation
Indices: 14637079--14637189 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 46
14637069 GACATTGAGT
* *
14637079 CGATG-AGACACTATGTGTCGACTAT-TGTTAAAGTTCTGGATTTGTTC
1 CGATGAAG-CACTATGTGT--ACTATATGTTAAAGTTCCGAATTTGTTC
* *
14637126 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGAATTTGTTC
1 CGATGAAGCACTATGTGTACTAT-ATGTTAAAGTTCCGAATTTGTTC
*
14637173 TGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
14637190 CTTATCCCGG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
45 5 0.09
47 47 0.87
48 2 0.04
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.38
Consensus pattern (46 bp):
CGATGAAGCACTATGTGTACTATATGTTAAAGTTCCGAATTTGTTC
Found at i:14642322 original size:392 final size:390
Alignment explanation
Indices: 14641592--14642377 Score: 908
Period size: 392 Copynumber: 2.0 Consensus size: 390
14641582 TTGGTATCAT
* * * * * *
14641592 TGAATTCGGGTTTGGATTTTGGATTTTTAGGTTCTGGAGTGCTCGTGGTTGCTTTAGCATCTTTT
1 TGAATTCGAGTTTGGATTATGAATTTTTAGGTTCTAGAGTGCTCGTGGTTACTTTAGCATCATTT
* * * * * *
14641657 TGATACTAGGTGTGTACCTAAAAACACAGAAAATAAGAAGCGGCGAAAGCTGAAAAATGAATCTA
66 TGATACTAGGTGTGTACCCAAAAACACAAAAAACAAGAAGCGACAAAAGCTAAAAAATGAATCTA
* *
14641722 TCGACGCCACACGGCCACGTGGTCGCCCGTGTGGTAGGCCGTGTGATAGCACTAATGATCGACGA
131 TCAACGCCACACGGCCACGTGGTCACCCGTGTGGTAGGCCGTGTGATAGCACTAATGATCGACGA
* * * ** *
14641787 GCCAAGCCGTGAGAACAAGATATGGGCACATAACACAGCTGTGTGTTGGTCGGTGAGACCGTGTG
196 GCCAAGCCGTGAG-ACAAGAAACGAGCACATAACACAGCTGTGTGTTGACCGGTGAGACCATGTG
** *
14641852 GGATAAACGGGCTCGACCCATTGGGCCGTGTGGGCCACACAAGCGTGTAAGCCCACACAGGTAGG
260 GGATAAACGGGCTCGACCCATCAGGCCGTGTGGGCCACACAAGCGTGTAA-CCCACACAGGCAGG
* * * * * *
14641917 CCACATGGGCATGTGAGCCCATTTTTTTGAAATAATCTATAAGGTTGCACGGGTTGCCCAAGTCG
324 CCACATAGGCATGTAAGCCCATTTTTCTAAAATAATCTATAAAGTTGCACGGGTCGCCCAAGTCG
14641982 AC
389 AC
*
14641984 TGAATTCGAGTTTGGATTATGAATTTTTAGGTTCTAGAGTGCTTGTGGTTACTTTAGCATCATTT
1 TGAATTCGAGTTTGGATTATGAATTTTTAGGTTCTAGAGTGCTCGTGGTTACTTTAGCATCATTT
*
14642049 TGATACCT-GGTGTGTACCCGAAAACACAAAAAACAAGAAGCGACAAAAG-TCAAAAAATGAATC
66 TGATA-CTAGGTGTGTACCCAAAAACACAAAAAACAAGAAGCGACAAAAGCT-AAAAAATGAATC
* * ** **
14642112 TGTCAACGCCACACGGTCGTGTGGTCACCCGTGTGGTA-GCCTGTGTGATAGCACATGGGCGTGT
129 TATCAACGCCACACGGCCACGTGGTCACCCGTGTGGTAGGCC-GTGTGATAGCAC-T-----AAT
* ** * *
14642176 GATTGACGAGCCAAGCC-TGTACG-CAAGAAACGAGCACATTGCACGGCTTTGTGTTGACCGGTG
187 GATCGACGAGCCAAGCCGTG-A-GACAAGAAACGAGCACATAACACAGCTGTGTGTTGACCGGTG
* * * * * *
14642239 AGGCCATGTGTGATACACGGGCTCGGCCACA-CAGG-CGTGTGGGCC-CACACGGGTG-AA-CCA
250 AGACCATGTGGGATAAACGGGCTCGACC-CATCAGGCCGTGTGGGCCACACAAGCGTGTAACCCA
* ** *
14642299 CACGGGCAGGCCACATAGGCATGTAAGCTTATTTTTCTAAAATAATCTATAAAGTTGCATGGGTC
314 CACAGGCAGGCCACATAGGCATGTAAGCCCATTTTTCTAAAATAATCTATAAAGTTGCACGGGTC
14642364 GCCCAAGTCGAC
379 GCCCAAGTCGAC
14642376 TG
1 TG
14642378 TAACCAACCA
Statistics
Matches: 330, Mismatches: 52, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
391 4 0.01
392 224 0.68
393 3 0.01
394 2 0.01
395 8 0.02
396 10 0.03
397 58 0.18
398 20 0.06
399 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (390 bp):
TGAATTCGAGTTTGGATTATGAATTTTTAGGTTCTAGAGTGCTCGTGGTTACTTTAGCATCATTT
TGATACTAGGTGTGTACCCAAAAACACAAAAAACAAGAAGCGACAAAAGCTAAAAAATGAATCTA
TCAACGCCACACGGCCACGTGGTCACCCGTGTGGTAGGCCGTGTGATAGCACTAATGATCGACGA
GCCAAGCCGTGAGACAAGAAACGAGCACATAACACAGCTGTGTGTTGACCGGTGAGACCATGTGG
GATAAACGGGCTCGACCCATCAGGCCGTGTGGGCCACACAAGCGTGTAACCCACACAGGCAGGCC
ACATAGGCATGTAAGCCCATTTTTCTAAAATAATCTATAAAGTTGCACGGGTCGCCCAAGTCGAC
Found at i:14647935 original size:5 final size:5
Alignment explanation
Indices: 14647921--14647968 Score: 89
Period size: 5 Copynumber: 9.8 Consensus size: 5
14647911 AAGAATTAAG
14647921 TATA- TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
14647969 ATAAAAAACA
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.09
5 39 0.91
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:14648776 original size:13 final size:13
Alignment explanation
Indices: 14648758--14648783 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14648748 TTGAATTGGT
14648758 ATATATATATTGA
1 ATATATATATTGA
14648771 ATATATATATTGA
1 ATATATATATTGA
14648784 TTATTTGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
ATATATATATTGA
Found at i:14650263 original size:41 final size:40
Alignment explanation
Indices: 14650219--14650358 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
14650209 GACTTCAATT
* *
14650219 CGATGAGACACTAGGTGTCAAATTATTACTTCGGATATATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGAT-TATC
* * * * *
14650260 CGATGAGGCACTGGGTG-CCAA-T-TTACTTCAGTTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
*
14650297 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
* * *
14650337 CGATGAGGCATTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
14650359 CTGGTGTGTT
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
37 18 0.22
38 12 0.15
39 2 0.03
40 33 0.41
41 15 0.19
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGGATTATC
Found at i:14656427 original size:16 final size:15
Alignment explanation
Indices: 14656402--14656433 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
14656392 CTTCATTTGA
14656402 TTTTTAAAATATATT
1 TTTTTAAAATATATT
14656417 TTTTTATAAATATATT
1 TTTTTA-AAATATATT
14656433 T
1 T
14656434 ACTACATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTTAAAATATATT
Found at i:14661324 original size:3 final size:3
Alignment explanation
Indices: 14661318--14661467 Score: 300
Period size: 3 Copynumber: 50.0 Consensus size: 3
14661308 TTTAAACATA
14661318 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14661366 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14661414 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14661462 TCT TCT
1 TCT TCT
14661468 GCTTTTTATC
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 147 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:14662785 original size:18 final size:18
Alignment explanation
Indices: 14662762--14662796 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
14662752 AAATATATCA
14662762 TTTTAT-ATTAACATTTAT
1 TTTTATAATTAA-ATTTAT
14662780 TTTTATAATTAAATTTA
1 TTTTATAATTAAATTTA
14662797 AATAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTTATAATTAAATTTAT
Found at i:14664148 original size:19 final size:19
Alignment explanation
Indices: 14664088--14664151 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 19
14664078 AAAATCTATC
14664088 TACAAATTAAATCTCTAAGAT
1 TACAAATT--ATCTCTAAGAT
*
14664109 TACATTATCATATCTTCTAAGAT
1 TACA-AAT--TATC-TCTAAGAT
14664132 TACAAATTATCTCTAAGAT
1 TACAAATTATCTCTAAGAT
14664151 T
1 T
14664152 GCATATCTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 9 0.24
20 4 0.11
21 4 0.11
22 7 0.19
23 12 0.32
24 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (19 bp):
TACAAATTATCTCTAAGAT
Found at i:14669205 original size:40 final size:40
Alignment explanation
Indices: 14669002--14669184 Score: 312
Period size: 40 Copynumber: 4.6 Consensus size: 40
14668992 ACTCGTTCAT
* * * *
14669002 ATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAA
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
14669042 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
14669082 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
*
14669122 ATGCCTTCAGGACTTAGCCCGGATATAGTAGCTCGCACGA
1 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
*
14669162 ATGCCTTCGAGACTTAGCCCGGA
1 ATGCCTTCGGGACTTAGCCCGGA
14669185 ATTAGCCACT
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (40 bp):
ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
Found at i:14669205 original size:80 final size:80
Alignment explanation
Indices: 14669002--14669223 Score: 279
Period size: 80 Copynumber: 2.8 Consensus size: 80
14668992 ACTCGTTCAT
* * * * * *
14669002 ATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 ATGCCTTCGAGACTTAGCCCGGATATAGCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
14669067 TAGTAGCTCGCACGA
66 TAGTAGCTCGCACGA
* * * * *
14669082 ATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCAGGACTTAGCCCGGATA
1 ATGCCTTCGAGACTTAGCCCGGATATAGCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
14669147 TAGTAGCTCGCACGA
66 TAGTAGCTCGCACGA
* *
14669162 ATGCCTTCGAGACTTAGCCCGGA-ATTAGCCA-CTAGCTCAAATG-CTCTCGGGATTTAGCCCGG
1 ATGCCTTCGAGACTTAGCCCGGATA-TAG-CAGCTAGCACAAATGCCT-TCGGGACTTAGCCCGG
14669224 TTATCATCCG
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 3 0.02
80 123 0.97
81 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (80 bp):
ATGCCTTCGAGACTTAGCCCGGATATAGCAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
TAGTAGCTCGCACGA
Found at i:14669205 original size:120 final size:120
Alignment explanation
Indices: 14669002--14669223 Score: 297
Period size: 120 Copynumber: 1.9 Consensus size: 120
14668992 ACTCGTTCAT
* * *
14669002 ATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 ATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATA
* * *
14669067 TAGTAGCTCGCACGAATGC-CTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
66 TAGCAGCTAGCACAAATGCTC-TCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
* * *
14669122 ATGCCTTCAGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGAGACTTAGCCCGGA-A
1 ATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATA
* *
14669186 TTAGCCA-CTAGCTCAAATGCTCTCGGGATTTAGCCCGG
66 -TAG-CAGCTAGCACAAATGCTCTCGGGACTTAGCCCGG
14669224 TTATCATCCG
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
119 1 0.01
120 85 0.97
121 2 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (120 bp):
ATGCCTTCAGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGAGACTTAGCCCGGATA
TAGCAGCTAGCACAAATGCTCTCGGGACTTAGCCCGGATATAGTAGCTCGCACGA
Found at i:14675254 original size:20 final size:20
Alignment explanation
Indices: 14675229--14675266 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14675219 TTAATTTAAA
*
14675229 ATTTTATAATATAAAAATAT
1 ATTTTATAATAAAAAAATAT
*
14675249 ATTTTATATTAAAAAAAT
1 ATTTTATAATAAAAAAAT
14675267 CAAGAGTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTTATAATAAAAAAATAT
Done.