Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 53 of 433
Found at i:14679037 original size:3 final size:3
Alignment explanation
Indices: 14679029--14679107 Score: 131
Period size: 3 Copynumber: 26.3 Consensus size: 3
14679019 AAGGACCCAA
*
14679029 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
14679077 AGT ACT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
14679108 CAAATAAACA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 71 1.00
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:14681889 original size:10 final size:10
Alignment explanation
Indices: 14681868--14681929 Score: 74
Period size: 10 Copynumber: 6.1 Consensus size: 10
14681858 AATGACATTC
14681868 TAAATGATAAA
1 TAAA-GATAAA
14681879 TACAA-ATAAA
1 TA-AAGATAAA
*
14681889 TAAAGATAAT
1 TAAAGATAAA
14681899 TAAAGATAAA
1 TAAAGATAAA
14681909 TAAAGATAAA
1 TAAAGATAAA
14681919 TGAAA-ATAAA
1 T-AAAGATAAA
14681929 T
1 T
14681930 CCTAAAATTA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 2 0.04
10 37 0.80
11 5 0.11
12 2 0.04
ACGTcount: A:0.66, C:0.02, G:0.08, T:0.24
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:14682753 original size:96 final size:97
Alignment explanation
Indices: 14682584--14682770 Score: 313
Period size: 96 Copynumber: 1.9 Consensus size: 97
14682574 ATTTTATTTA
* * *
14682584 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATGCCAGCCAAGCACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGCCAGCCAAGCACCCCA
14682649 CCCCGGTTACTCAGCCCAACACATTCCTAATT
66 CCCCGGTTACTCAGCCCAACACATTCCTAATT
* *
14682681 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGCTAAGAGAGATGCCAGCCAAGCACCTCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGCCAGCCAAGCACCCCA
*
14682745 CCCTGGTTACTCAGCCCAACACATTC
66 CCCCGGTTACTCAGCCCAACACATTC
14682771 TTAAAAATTA
Statistics
Matches: 84, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
96 75 0.89
97 9 0.11
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCGAAGAGAGATGCCAGCCAAGCACCCCA
CCCCGGTTACTCAGCCCAACACATTCCTAATT
Found at i:14683557 original size:6 final size:6
Alignment explanation
Indices: 14683523--14683579 Score: 66
Period size: 6 Copynumber: 9.5 Consensus size: 6
14683513 ATCTGAAAAT
14683523 AATAAA TAAT-AA AATAATA AGAT-AA AATAAA AAT-AA AATAAA AATAAA
1 AATAAA -AATAAA AATAA-A A-ATAAA AATAAA AATAAA AATAAA AATAAA
14683571 AATAAA AAT
1 AATAAA AAT
14683580 TGGGTTGCCT
Statistics
Matches: 45, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
5 10 0.22
6 27 0.60
7 6 0.13
8 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (6 bp):
AATAAA
Found at i:14683558 original size:11 final size:11
Alignment explanation
Indices: 14683523--14683579 Score: 78
Period size: 12 Copynumber: 4.8 Consensus size: 11
14683513 ATCTGAAAAT
14683523 AATAAATAATAA
1 AATAAA-AATAA
14683535 AATAATAAGATAA
1 AATAA-AA-ATAA
14683548 AATAAAAATAA
1 AATAAAAATAA
14683559 AATAAAAATAAA
1 AATAAAAAT-AA
14683571 AATAAAAAT
1 AATAAAAAT
14683580 TGGGTTGCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
11 13 0.31
12 19 0.45
13 10 0.24
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (11 bp):
AATAAAAATAA
Found at i:14689940 original size:10 final size:10
Alignment explanation
Indices: 14689921--14689980 Score: 79
Period size: 10 Copynumber: 6.0 Consensus size: 10
14689911 TGAAATTCTA
14689921 AAAGATAAAT
1 AAAGATAAAT
14689931 ACAA-ATAAAT
1 A-AAGATAAAT
*
14689941 AAAGATAATT
1 AAAGATAAAT
14689951 AAAGATAAAT
1 AAAGATAAAT
14689961 AAAGATAAAT
1 AAAGATAAAT
14689971 GAAA-ATAAAT
1 -AAAGATAAAT
14689981 CCTAGAATTA
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
9 2 0.04
10 38 0.84
11 5 0.11
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:14696478 original size:7 final size:7
Alignment explanation
Indices: 14696468--14696547 Score: 70
Period size: 7 Copynumber: 11.0 Consensus size: 7
14696458 CCCCTAAATT
14696468 CTAAACC
1 CTAAACC
14696475 CTAAAACC
1 CT-AAACC
*
14696483 TTAAAACC
1 CT-AAACC
* *
14696491 TTAAAATC
1 CT-AAACC
14696499 CTAAACC
1 CTAAACC
* *
14696506 TTAAACA
1 CTAAACC
*
14696513 TTAAACC
1 CTAAACC
14696520 CTAAACC
1 CTAAACC
14696527 CTAAACC
1 CTAAACC
*
14696534 TTAAACC
1 CTAAACC
14696541 CTAAACC
1 CTAAACC
14696548 ACATGCTACC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
7 42 0.68
8 20 0.32
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:14696524 original size:21 final size:21
Alignment explanation
Indices: 14696469--14696547 Score: 104
Period size: 21 Copynumber: 3.6 Consensus size: 21
14696459 CCCTAAATTC
14696469 TAAACCCTAAAACCTTAAAACCT
1 TAAACCCT-AAACCTT-AAACCT
* *
14696492 TAAAATCCTAAACCTTAAACAT
1 T-AAACCCTAAACCTTAAACCT
*
14696514 TAAACCCTAAACCCTAAACCT
1 TAAACCCTAAACCTTAAACCT
14696535 TAAACCCTAAACC
1 TAAACCCTAAACC
14696548 ACATGCTACC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
21 30 0.60
22 6 0.12
23 8 0.16
24 6 0.12
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAACCCTAAACCTTAAACCT
Found at i:14696540 original size:14 final size:14
Alignment explanation
Indices: 14696486--14696547 Score: 79
Period size: 14 Copynumber: 4.4 Consensus size: 14
14696476 TAAAACCTTA
*
14696486 AAACCTTAAAATCCT
1 AAACCTT-AAACCCT
**
14696501 AAACCTTAAACATT
1 AAACCTTAAACCCT
*
14696515 AAACCCTAAACCCT
1 AAACCTTAAACCCT
14696529 AAACCTTAAACCCT
1 AAACCTTAAACCCT
14696543 AAACC
1 AAACC
14696548 ACATGCTACC
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
14 33 0.82
15 7 0.17
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCTTAAACCCT
Found at i:14698209 original size:50 final size:50
Alignment explanation
Indices: 14698130--14698268 Score: 172
Period size: 50 Copynumber: 2.8 Consensus size: 50
14698120 CTAGGGAGAT
* ** *
14698130 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAC-CGATAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTCAATAG
* *
14698180 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCAATAT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATAG
* * **
14698230 ACGAGAGTCAGTGTAAGACCATGTCTCAGACATGGCATC
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
14698269 GACTTTGATG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 76 0.99
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (50 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAATAG
Found at i:14705472 original size:24 final size:24
Alignment explanation
Indices: 14705444--14705493 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
14705434 TGAATCACTT
*
14705444 TATTAATACATATTCTCATAATCA
1 TATTAATACACATTCTCATAATCA
14705468 TATTAATACACATTCTCATAATCA
1 TATTAATACACATTCTCATAATCA
14705492 TA
1 TA
14705494 CTTACTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (24 bp):
TATTAATACACATTCTCATAATCA
Found at i:14705510 original size:24 final size:24
Alignment explanation
Indices: 14705444--14705517 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
14705434 TGAATCACTT
* *
14705444 TATTAATACATATTCTCATAATCA
1 TATTAATACACACTCTCATAATCA
*
14705468 TATTAATACACATTCTCATAATCA
1 TATTAATACACACTCTCATAATCA
* * *
14705492 TACTTACTTCACACT-TCATCATCA
1 TA-TTAATACACACTCTCATAATCA
14705516 TA
1 TA
14705518 AACACATACA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
24 35 0.80
25 9 0.20
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.39
Consensus pattern (24 bp):
TATTAATACACACTCTCATAATCA
Found at i:14705755 original size:40 final size:39
Alignment explanation
Indices: 14705707--14705914 Score: 229
Period size: 40 Copynumber: 5.2 Consensus size: 39
14705697 TCTTCGAAAT
* **
14705707 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAA-TGCCTTCGGGTC
* * *** * *
14705746 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCAGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
*
14705786 TTAGCCCGGATATATCAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
*
14705826 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTCGCAC-AATGCCTTCGGGTC
* * *
14705866 TTAGCTCGGATATAACAACTCGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACAACTCGCA-CAATGCCTTCGGGTC
14705906 TTAGCCCGG
1 TTAGCCCGG
14705915 GTATCATTCA
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 3 0.02
40 137 0.96
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTCGCACAATGCCTTCGGGTC
Found at i:14715246 original size:39 final size:39
Alignment explanation
Indices: 14715182--14715278 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 39
14715172 ATTTGAAAAT
* * *
14715182 TATATCTGGACTTAAAGTCCGCAGGCTATATGCGGGAAA
1 TATATCCGGACTTAAAGTCCACAGGCTACATGCGGGAAA
* * * *
14715221 TATATCCGGACTTCAGGTCCACAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCACAGGCTACATGCGGGAAA
14715260 TATATCCAGG-CTTAAAGTC
1 TATATCC-GGACTTAAAGTC
14715279 TCGAAGGCTT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
39 46 0.96
40 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCACAGGCTACATGCGGGAAA
Found at i:14725953 original size:39 final size:39
Alignment explanation
Indices: 14725894--14725991 Score: 124
Period size: 39 Copynumber: 2.5 Consensus size: 39
14725884 ATTTGAAAAT
* *
14725894 TATATCCGGACTTAAAGTCCGCAGGCTATATGTGGGAAA
1 TATATCCAGACTTAAAGTCCGCAGGCTACATGTGGGAAA
* * * *
14725933 TATATCCAGACTTCAGGTCCGCAGGCTACGTGTTGGAAA
1 TATATCCAGACTTAAAGTCCGCAGGCTACATGTGGGAAA
* *
14725972 TATATCCGGGCTTAAAGTCC
1 TATATCCAGACTTAAAGTCC
14725992 CGAAGGCTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 49 1.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (39 bp):
TATATCCAGACTTAAAGTCCGCAGGCTACATGTGGGAAA
Found at i:14727389 original size:13 final size:13
Alignment explanation
Indices: 14727371--14727417 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
14727361 AATCGAACAG
14727371 GGGCGTGTGCCAC
1 GGGCGTGTGCCAC
14727384 GGGCGTGTGCCAC
1 GGGCGTGTGCCAC
*
14727397 GGCCGTGTGCCAC
1 GGGCGTGTGCCAC
*
14727410 GAGCGTGT
1 GGGCGTGT
14727418 CCCTGCCGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.09, C:0.30, G:0.45, T:0.17
Consensus pattern (13 bp):
GGGCGTGTGCCAC
Found at i:14731792 original size:93 final size:93
Alignment explanation
Indices: 14731664--14731834 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
14731654 GCCCATAAGT
*
14731664 GAACTCGGACTCAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14731729 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
14731757 GAACTCGGACTCAACTCAATGAGTTCG-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGAG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14731821 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
14731835 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 1 0.01
93 73 0.99
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:14731830 original size:46 final size:47
Alignment explanation
Indices: 14731656--14731831 Score: 220
Period size: 46 Copynumber: 3.8 Consensus size: 47
14731646 TGTAACCCGC
* *
14731656 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
*
14731702 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
* * *
14731752 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGA-CATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
14731795 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14731832 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.55
47 30 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:14736227 original size:19 final size:21
Alignment explanation
Indices: 14736184--14736227 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 21
14736174 CTTATCCCAC
14736184 CCTTTCTTTCCCTTTTTCTTT
1 CCTTTCTTTCCCTTTTTCTTT
*
14736205 -CTTTC-TT-CCTTTTTGTTT
1 CCTTTCTTTCCCTTTTTCTTT
14736223 CCTTT
1 CCTTT
14736228 ATCCCCTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 10 0.48
19 6 0.29
20 5 0.24
ACGTcount: A:0.00, C:0.30, G:0.02, T:0.68
Consensus pattern (21 bp):
CCTTTCTTTCCCTTTTTCTTT
Found at i:14741708 original size:16 final size:17
Alignment explanation
Indices: 14741687--14741721 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
14741677 AAAAATTGTT
14741687 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
14741703 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
14741720 TT
1 TT
14741722 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:14741768 original size:13 final size:14
Alignment explanation
Indices: 14741750--14741781 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
14741740 ATATATTTTC
14741750 ATTATTTTATAT-T
1 ATTATTTTATATAT
14741763 ATTA-TTTATATAT
1 ATTATTTTATATAT
14741776 ATTATT
1 ATTATT
14741782 ATCCTTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.41
13 9 0.53
14 1 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTATTTTATATAT
Found at i:14741831 original size:36 final size:35
Alignment explanation
Indices: 14741791--14741870 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
14741781 TATCCTTAAC
14741791 TATTATATTTTATTAATCAAT-TACTTATATACTATA
1 TATTATATTTTA--AATCAATATACTTATATACTATA
* * * *
14741827 TATTACGATTTTAAATCCATATACTTTTATATTATA
1 TATTA-TATTTTAAATCAATATACTTATATACTATA
14741863 TATTATAT
1 TATTATAT
14741871 AATTATTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
35 8 0.22
36 23 0.62
37 6 0.16
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.53
Consensus pattern (35 bp):
TATTATATTTTAAATCAATATACTTATATACTATA
Found at i:14753786 original size:40 final size:40
Alignment explanation
Indices: 14753766--14753951 Score: 372
Period size: 40 Copynumber: 4.7 Consensus size: 40
14753756 TTGCACAAAG
14753766 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
14753806 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
14753846 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
14753886 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
14753926 GCCTTCGGGTCTTAGCCCGGATATAT
1 GCCTTCGGGTCTTAGCCCGGATATAT
14753952 TTCCAATGTT
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACGAAT
Found at i:14757459 original size:206 final size:206
Alignment explanation
Indices: 14757096--14757852 Score: 1137
Period size: 206 Copynumber: 3.7 Consensus size: 206
14757086 GCAGATCTGG
* * *
14757096 CTGAAGCAAGATCCAATATGGTTTGGTATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
14757161 GATTTGGCTTTCACATGCTTACGATGAGGCAAATCTAAGATGATTTGGAATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * *
14757226 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGAGTAGATACATATCAGATCTGGCCTT
130 AGAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGATACATAGCAGATCTAGCCTT
14757291 CAAATGTTTATA
195 CAAATGTTTATA
* *
14757303 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
14757368 ATTTGGCTTTCACGTGCTTATGATGAAGCAAATCTAAGATGTTTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * *
14757433 AAACAAATCGAATTTTGGCATCTCCATATTCGATAGAGAGCAGATACATAGCAGATCTAGCCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGATACATAGCAGATCTAGCCTTC
14757498 AAATGTTTATA
196 AAATGTTTATA
* *
14757509 TTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* *
14757574 ATTTGGCCTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
* * * * *
14757639 GAACAAATTGAAGTTTGGCGTCTCCATATTCGACGGAGGGCAGACACATAGCAGATCTAACCTTC
131 GAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGATACATAGCAGATCTAGCCTTC
* * *
14757704 AGATGATTAGA
196 AAATGTTTATA
* * *
14757715 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* * * *
14757780 ATTTGGTTTTCGCGTGCTTACGCTGAAGCAAA--T---ATGATTTGGCATCTCTATATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
14757840 GAACAAATCGAAG
131 GAACAAATCGAAG
14757853 AAGCAGATTT
Statistics
Matches: 502, Mismatches: 48, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
201 38 0.08
204 1 0.00
206 457 0.91
207 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCGAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGATACATAGCAGATCTAGCCTTC
AAATGTTTATA
Found at i:14759680 original size:16 final size:17
Alignment explanation
Indices: 14759659--14759693 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
14759649 AAAAATTGTT
14759659 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
14759675 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
14759692 TT
1 TT
14759694 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:14759740 original size:13 final size:14
Alignment explanation
Indices: 14759722--14759753 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
14759712 ATATATTTTC
14759722 ATTATTTTATAT-T
1 ATTATTTTATATAT
14759735 ATTA-TTTATATAT
1 ATTATTTTATATAT
14759748 ATTATT
1 ATTATT
14759754 ATCCTTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.41
13 9 0.53
14 1 0.06
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTATTTTATATAT
Found at i:14759803 original size:36 final size:35
Alignment explanation
Indices: 14759763--14759842 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 35
14759753 TATCCTTAAC
14759763 TATTATATTTTATTAATCAAT-TACTTATATACTATA
1 TATTATATTTTA--AATCAATATACTTATATACTATA
* * * *
14759799 TATTACGATTTTAAATCCATATACTTTTATATTATA
1 TATTA-TATTTTAAATCAATATACTTATATACTATA
14759835 TATTATAT
1 TATTATAT
14759843 AATTATTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
35 8 0.22
36 23 0.62
37 6 0.16
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.53
Consensus pattern (35 bp):
TATTATATTTTAAATCAATATACTTATATACTATA
Found at i:14763018 original size:29 final size:29
Alignment explanation
Indices: 14762972--14763029 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
14762962 TGTTTTTAAT
*
14762972 ATGTATGCAAATTTTTAGATTCATCGGGA
1 ATGTATGCAAATTGTTAGATTCATCGGGA
14763001 ATGTATGCAAATTGTTAGATTCATCGGGA
1 ATGTATGCAAATTGTTAGATTCATCGGGA
14763030 GCCTCTATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.36
Consensus pattern (29 bp):
ATGTATGCAAATTGTTAGATTCATCGGGA
Found at i:14764608 original size:20 final size:20
Alignment explanation
Indices: 14764570--14764609 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
14764560 AAAATGTATA
*
14764570 TATATACATATGTTAAACAT
1 TATATACATATGATAAACAT
14764590 TATATACATAT-ATAGAACAT
1 TATATACATATGATA-AACAT
14764610 GGAACACATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.47, C:0.10, G:0.05, T:0.38
Consensus pattern (20 bp):
TATATACATATGATAAACAT
Found at i:14766541 original size:21 final size:20
Alignment explanation
Indices: 14766513--14766552 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
14766503 AGGTATAATA
14766513 GCCAAGCTTA-ATCATATTCG
1 GCCAAGCTTATAT-ATATTCG
14766533 GCCATAGCTTATATATATTC
1 GCCA-AGCTTATATATATTC
14766553 ACACATTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 12 0.67
22 2 0.11
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (20 bp):
GCCAAGCTTATATATATTCG
Found at i:14769331 original size:43 final size:43
Alignment explanation
Indices: 14769162--14769316 Score: 165
Period size: 43 Copynumber: 3.7 Consensus size: 43
14769152 ATATCGTACA
* *
14769162 ATGCCAACACCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
14769205 ATGCC-ACTATCCTAGACAG-GGTCTTACACG-AATCAAATA-CG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGTAATCACATATCG
* * ** * *
14769246 ATGTCGATGTCCCAAACATGGTCTTACACGTAATCACATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
*
14769289 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACATCCCAGACGTGGTCTTACA
14769317 TGAGAACACA
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
41 23 0.26
42 19 0.21
43 47 0.52
44 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:14769935 original size:15 final size:15
Alignment explanation
Indices: 14769912--14769941 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14769902 TCAAAAATTC
14769912 TAATACAAAACATAT
1 TAATACAAAACATAT
*
14769927 TAATCCAAAACATAT
1 TAATACAAAACATAT
14769942 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:14775648 original size:13 final size:13
Alignment explanation
Indices: 14775630--14775654 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14775620 AACTAGTATA
14775630 ATTATTTCATACC
1 ATTATTTCATACC
14775643 ATTATTTCATAC
1 ATTATTTCATAC
14775655 ATGAATCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTATTTCATACC
Found at i:14776027 original size:2 final size:2
Alignment explanation
Indices: 14776020--14776049 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14776010 TTCACAAGTT
14776020 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14776050 CATAATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14777446 original size:43 final size:43
Alignment explanation
Indices: 14777300--14777454 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
14777290 ATATCGTACA
* * *
14777300 ATGCCAACGTC-CTAGACGTGGTCTTACATGTAATCACATATCA
1 ATGCCAACGTCTC-AGACATGGTCTTACACGTAATCACATATCG
* * *
14777343 AT-CCCACTGTCTCAGACAGGGTCTTACACG-AATCAAATA-CG
1 ATGCCAAC-GTCTCAGACATGGTCTTACACGTAATCACATATCG
* * * * *
14777384 TTGTCGATGTCTCAGACATGGTCTTAAACGTAATCACATATCG
1 ATGCCAACGTCTCAGACATGGTCTTACACGTAATCACATATCG
14777427 ATGCCAACGTC-CTAGACATGGTCTTACA
1 ATGCCAACGTCTC-AGACATGGTCTTACA
14777455 AAAGAACACA
Statistics
Matches: 88, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
41 22 0.25
42 23 0.26
43 42 0.48
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCTCAGACATGGTCTTACACGTAATCACATATCG
Found at i:14781805 original size:32 final size:32
Alignment explanation
Indices: 14781732--14781806 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 32
14781722 TGATATTGAA
* * *
14781732 ATGGGCTAGGCCCAATTGATACTAGTTTTGAT
1 ATGGGCTAGGCCCAACTGATACTAGTTCTGAG
*
14781764 ATGGGCTAGGCCCAACTGATA-TTGATTCTGAG
1 ATGGGCTAGGCCCAACTGATACTAG-TTCTGAG
*
14781796 ATGGACTAGGC
1 ATGGGCTAGGC
14781807 TCAAGTGAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 2 0.05
32 35 0.95
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (32 bp):
ATGGGCTAGGCCCAACTGATACTAGTTCTGAG
Found at i:14786732 original size:41 final size:40
Alignment explanation
Indices: 14786687--14786986 Score: 408
Period size: 41 Copynumber: 7.4 Consensus size: 40
14786677 CGTTTTACCG
* * *
14786687 AAAACGCCACTAAAACCAGAGCAATAGCGGCG-TTTTAGTAA
1 AAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTT-G-GA
* * *
14786728 AAAACGCCGC-AATAA-TAGAGCATTAGCGGCGTTTTTGGC
1 AAAACGCCGCTAA-AACCAGAGCATTAGCGGCGCTTTTGGA
*
14786767 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
1 AAAACGCCGCT-AAAACCAGAGCATTAGCGGCGCTTTTGGA
*
14786808 AAAACGCCGCTAAAAACCAGTGCATTAGCGGCGCTTTTGGA
1 AAAACGCCGCT-AAAACCAGAGCATTAGCGGCGCTTTTGGA
*
14786849 AAAACGCCACTAAAAACCAGAGCATTAGCGGCGCTTTTGGA
1 AAAACGCCGCT-AAAACCAGAGCATTAGCGGCGCTTTTGGA
* *
14786890 AAAACGCCGCTTAAAACCAGAGCATTAGCGGTGCTTTTGGC
1 AAAACGCCGC-TAAAACCAGAGCATTAGCGGCGCTTTTGGA
14786931 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGA
1 AAAACGCCGCT-AAAACCAGAGCATTAGCGGCGCTTTTGGA
14786972 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
14786987 GTCATATAAC
Statistics
Matches: 236, Mismatches: 16, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
39 10 0.04
40 24 0.10
41 201 0.85
42 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (40 bp):
AAAACGCCGCTAAAACCAGAGCATTAGCGGCGCTTTTGGA
Found at i:14786906 original size:123 final size:122
Alignment explanation
Indices: 14786656--14786986 Score: 454
Period size: 123 Copynumber: 2.7 Consensus size: 122
14786646 GCAAAAATTG
* * ** * *
14786656 TAAAACACATAGCAATAGCGGCG-TTTTACCGAAAACGCCACT-AAAACCAGAGCAATAGCGGCG
1 TAAAAC-CAGAGCATTAGCGGCGCTTTTGGC-AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG
* * * * *
14786719 -TTTTAGTAAAAAACGCCGC-AATAATAGAGCATTAGCGGCGTTTTTGGCAAAACGCCGCT
64 CTTTT-G-GAAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
* *
14786778 AAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGTGCATTAGCGGCGCT
1 TAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCT
*
14786843 TTTGGAAAAACGCCACTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
66 TTTGGAAAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
*
14786901 TAAAACCAGAGCATTAGCGGTGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCT
1 TAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCT
14786966 TTTGGAAAAACGCCGCTAAAA
66 TTTGGAAAAACGCCGCTAAAA
14786987 GTCATATAAC
Statistics
Matches: 186, Mismatches: 18, Indels: 9
0.87 0.08 0.04
Matches are distributed among these distances:
121 34 0.18
122 34 0.18
123 118 0.63
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.19
Consensus pattern (122 bp):
TAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCT
TTTGGAAAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
Found at i:14787157 original size:7 final size:7
Alignment explanation
Indices: 14787142--14787195 Score: 54
Period size: 7 Copynumber: 7.7 Consensus size: 7
14787132 TTAATTATCA
*
14787142 TTATAGT
1 TTATGGT
14787149 TTATGGT
1 TTATGGT
14787156 TTATGGT
1 TTATGGT
* *
14787163 TTAAGAT
1 TTATGGT
*
14787170 ATATGGT
1 TTATGGT
*
14787177 TTAGGGT
1 TTATGGT
*
14787184 TTAAGGT
1 TTATGGT
14787191 TTATG
1 TTATG
14787196 AGTTAACTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (7 bp):
TTATGGT
Found at i:14787174 original size:21 final size:21
Alignment explanation
Indices: 14787150--14787234 Score: 89
Period size: 21 Copynumber: 3.9 Consensus size: 21
14787140 CATTATAGTT
*
14787150 TATGGTTTATGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* *
14787171 TATGGTTTAGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
14787192 TATGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
*
14787217 TATAGTTTAGGGTTTAAG
1 TATGGTTTAGGGTTTAAG
14787235 GTTTAAGAGT
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 32 0.62
22 3 0.06
24 3 0.06
25 14 0.27
ACGTcount: A:0.28, C:0.01, G:0.26, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:14787209 original size:46 final size:46
Alignment explanation
Indices: 14787157--14787250 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
14787147 GTTTATGGTT
* *
14787157 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
14787203 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
14787249 TA
1 TA
14787251 GTATTTGAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.31, C:0.02, G:0.24, T:0.43
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGGTTTAAGAGTTAAC
Found at i:14787983 original size:19 final size:18
Alignment explanation
Indices: 14787943--14787985 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
14787933 TTTATGAACT
*
14787943 TTTTTAAAATTTTTTGAT
1 TTTTTAAAATTTTTTGAA
*
14787961 TTTTTAAATATTTTTTTAA
1 TTTTTAAA-ATTTTTTGAA
14787980 TTTTTA
1 TTTTTA
14787986 TGATTTATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTTTAAAATTTTTTGAA
Found at i:14791023 original size:23 final size:22
Alignment explanation
Indices: 14790968--14791023 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
14790958 CTATTACGTA
*
14790968 GATATAACTGC-TTGGAGACAC
1 GATATAACTGCAGTGGAGACAC
***
14790989 GATATGTTTGCAAGTGGAGACAC
1 GATATAACTGC-AGTGGAGACAC
14791012 GATATAACTGCA
1 GATATAACTGCA
14791024 TAATTTGGCT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
21 8 0.31
22 1 0.04
23 17 0.65
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (22 bp):
GATATAACTGCAGTGGAGACAC
Found at i:14793285 original size:17 final size:18
Alignment explanation
Indices: 14793263--14793296 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14793253 TACTTGTGGG
14793263 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
14793280 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
14793297 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:14793686 original size:43 final size:43
Alignment explanation
Indices: 14793621--14793843 Score: 349
Period size: 43 Copynumber: 5.2 Consensus size: 43
14793611 GATCATTATT
* * *
14793621 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATGATC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* *
14793664 TTTAGCGGCGTTTGCAAAAAAAGCGCAGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
* * *
14793707 TTTAGCAGCGTTTTCGAAAAAAGCGTCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
14793750 TTTAGCGGCGTTTGCGGAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
*
14793793 TTTAGCGGCGTTTGCG-AAAAAGCGCCGCTAAAGGTCATGGTA
1 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
14793835 TTTAGCGGC
1 TTTAGCGGC
14793844 ATTTTTTTCG
Statistics
Matches: 165, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
42 34 0.21
43 131 0.79
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:14795530 original size:25 final size:25
Alignment explanation
Indices: 14795502--14795551 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14795492 AAACAGAGAG
*
14795502 TAAACATACACACAGTAAGCTTTCA
1 TAAACATACACACAATAAGCTTTCA
14795527 TAAACATACACACAATAAGCTTTCA
1 TAAACATACACACAATAAGCTTTCA
14795552 CAGCTTAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.46, C:0.24, G:0.06, T:0.24
Consensus pattern (25 bp):
TAAACATACACACAATAAGCTTTCA
Found at i:14796092 original size:41 final size:42
Alignment explanation
Indices: 14796004--14796161 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 42
14795994 CCAATGCCCT
*
14796004 AGACGTGGTCTTACATGTAATCACATATCGATGCCACTAT-CA
1 AGACATGGTCTTACATGTAATCACATATCGATGCCA-TATCCA
* *
14796046 CAGACAAGGTCTTACATG-AATCAAATA-CGATGCCGATATCCA
1 -AGACATGGTCTTACATGTAATCACATATCGATGCC-ATATCCA
* * *
14796088 AGACATGGTCTTACATGTAATCACATATCGATGCTAATGTCCT
1 AGACATGGTCTTACATGTAATCACATATCGATGC-CATATCCA
* *
14796131 AGACATGGTCTTACTTG-AGAACACATATCGA
1 AGACATGGTCTTACATGTA-ATCACATATCGA
14796162 AAATCTTATG
Statistics
Matches: 99, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
41 26 0.26
42 20 0.20
43 53 0.54
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACATGTAATCACATATCGATGCCATATCCA
Found at i:14799479 original size:3 final size:3
Alignment explanation
Indices: 14799471--14799522 Score: 104
Period size: 3 Copynumber: 17.3 Consensus size: 3
14799461 CCTTTTACCA
14799471 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14799519 TCT T
1 TCT T
14799523 TTTGCATCAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:14802199 original size:28 final size:28
Alignment explanation
Indices: 14802167--14802223 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
14802157 CAAGCATGTA
14802167 AATAAACATAATTTAGTTACATGAACTT
1 AATAAACATAATTTAGTTACATGAACTT
14802195 AATAAACATAATTTAGTTACATGAACTT
1 AATAAACATAATTTAGTTACATGAACTT
14802223 A
1 A
14802224 CCTCGAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.11, G:0.07, T:0.35
Consensus pattern (28 bp):
AATAAACATAATTTAGTTACATGAACTT
Found at i:14811138 original size:28 final size:27
Alignment explanation
Indices: 14811075--14811144 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
14811065 ATAGTGAGTC
14811075 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
14811102 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
14811130 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14811145 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:14818456 original size:57 final size:58
Alignment explanation
Indices: 14818388--14818498 Score: 136
Period size: 58 Copynumber: 1.9 Consensus size: 58
14818378 AAATACGTTA
* * * * *
14818388 TGTAACGTATGCTC-AGAAGAGCTCA-ATTAGGATTACCAGTCCAGGCTAAATCCTAAT
1 TGTAACATATGCTCGAG-AGAGATCAGATCAAGATTACCAATCCAGGCTAAATCCTAAT
* *
14818445 TGTAACATATGCTCGAGAGGGATTAGATCAAGATTACCAATCCAGGCTAAATCC
1 TGTAACATATGCTCGAGAGAGATCAGATCAAGATTACCAATCCAGGCTAAATCC
14818499 GTCTATAATG
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 18 0.40
58 27 0.60
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (58 bp):
TGTAACATATGCTCGAGAGAGATCAGATCAAGATTACCAATCCAGGCTAAATCCTAAT
Found at i:14822178 original size:12 final size:11
Alignment explanation
Indices: 14822161--14822205 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 11
14822151 GTGTGGTCAT
14822161 GGAGGGATTGTA
1 GGAGGGATTG-A
14822173 GGAGGGAGTTGA
1 GGAGGGA-TTGA
*
14822185 GGAGAGATATGA
1 GGAGGGAT-TGA
14822197 GGAGGGATT
1 GGAGGGATT
14822206 TTAGGAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 2 0.07
12 24 0.83
13 3 0.10
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (11 bp):
GGAGGGATTGA
Found at i:14822211 original size:12 final size:12
Alignment explanation
Indices: 14822161--14822212 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
14822151 GTGTGGTCAT
14822161 GGAGGGA-TTGTA
1 GGAGGGATTTG-A
*
14822173 GGAGGGAGTTGA
1 GGAGGGATTTGA
* *
14822185 GGAGAGATATGA
1 GGAGGGATTTGA
*
14822197 GGAGGGATTTTA
1 GGAGGGATTTGA
14822209 GGAG
1 GGAG
14822213 AAAATCAAGG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
12 30 0.91
13 3 0.09
ACGTcount: A:0.29, C:0.00, G:0.50, T:0.21
Consensus pattern (12 bp):
GGAGGGATTTGA
Found at i:14823675 original size:27 final size:27
Alignment explanation
Indices: 14823645--14823766 Score: 124
Period size: 27 Copynumber: 4.5 Consensus size: 27
14823635 TTTTGCCCTT
* *
14823645 ATAGGATAAAATGATTGAAATAACCCC
1 ATAGGGTAAAATGATCGAAATAACCCC
*
14823672 ATAGGGTAAAATGATC--ATTATACCCC
1 ATAGGGTAAAATGATCGAAATA-ACCCC
* *
14823698 TATAGGGTAAAATGATCGATATACCCCC
1 -ATAGGGTAAAATGATCGAAATAACCCC
*
14823726 ATAGGGTAAAATGACCGAAAT-ACCCC
1 ATAGGGTAAAATGATCGAAATAACCCC
* *
14823752 AGTACGATAAAATGA
1 A-TAGGGTAAAATGA
14823767 CTGTAATTCC
Statistics
Matches: 79, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
25 3 0.04
26 10 0.13
27 60 0.76
28 4 0.05
29 2 0.03
ACGTcount: A:0.43, C:0.18, G:0.17, T:0.22
Consensus pattern (27 bp):
ATAGGGTAAAATGATCGAAATAACCCC
Found at i:14823682 original size:54 final size:54
Alignment explanation
Indices: 14823624--14823766 Score: 164
Period size: 54 Copynumber: 2.6 Consensus size: 54
14823614 CCTTAATCGA
* * * *
14823624 TAAAATGACCATTTTGCCCTTATAGGATAAAATGATTGAAATAACCCCATAGGG
1 TAAAATGACCATTATACCCCTATAGGATAAAATGATCGAAATAACCCCATAGGG
* * * *
14823678 TAAAATGATCATTATACCCCTATAGGGTAAAATGATCGATATACCCCCATAGGG
1 TAAAATGACCATTATACCCCTATAGGATAAAATGATCGAAATAACCCCATAGGG
* *
14823732 TAAAATGACCGA-AATACCCC-AGTACGATAAAATGA
1 TAAAATGACC-ATTATACCCCTA-TAGGATAAAATGA
14823767 CTGTAATTCC
Statistics
Matches: 75, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.24
Consensus pattern (54 bp):
TAAAATGACCATTATACCCCTATAGGATAAAATGATCGAAATAACCCCATAGGG
Found at i:14823736 original size:81 final size:81
Alignment explanation
Indices: 14823645--14823793 Score: 187
Period size: 81 Copynumber: 1.8 Consensus size: 81
14823635 TTTTGCCCTT
** * *
14823645 ATAGGATAAAATGATTGAAATAACCCCA-TAGGGTAAAATGATCAT-T-ATACCCCTATAGGGTA
1 ATAGGATAAAATGACCGAAAT-ACCCCAGTACGATAAAATGA-C-TGTAATACCCCTATAGGGTA
14823707 AAATGATCGATATACCCCC
63 AAATGATCGATATACCCCC
* * *
14823726 ATAGGGTAAAATGACCGAAATACCCCAGTACGATAAAATGACTGTAATTCCCCTGTAGGGTAAAA
1 ATAGGATAAAATGACCGAAATACCCCAGTACGATAAAATGACTGTAATACCCCTATAGGGTAAAA
14823791 TGA
66 TGA
14823794 CTGTTTTGCT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.02
80 8 0.14
81 49 0.84
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (81 bp):
ATAGGATAAAATGACCGAAATACCCCAGTACGATAAAATGACTGTAATACCCCTATAGGGTAAAA
TGATCGATATACCCCC
Found at i:14823767 original size:27 final size:27
Alignment explanation
Indices: 14823646--14823794 Score: 117
Period size: 27 Copynumber: 5.5 Consensus size: 27
14823636 TTTGCCCTTA
* **
14823646 TAGGATAAAATGATTGAAATAACCCCA-
1 TAGGGTAAAATGACCGAAAT-ACCCCAG
* *
14823673 TAGGGTAAAATGATC-ATTATACCCCTA-
1 TAGGGTAAAATGACCGA-AATACCCC-AG
* *
14823700 TAGGGTAAAATGATCGATATACCCCCA-
1 TAGGGTAAAATGACCGAAATA-CCCCAG
14823727 TAGGGTAAAATGACCGAAATACCCCAG
1 TAGGGTAAAATGACCGAAATACCCCAG
* * * * * *
14823754 TACGATAAAATGACTGTAATTCCCCTG
1 TAGGGTAAAATGACCGAAATACCCCAG
14823781 TAGGGTAAAATGAC
1 TAGGGTAAAATGAC
14823795 TGTTTTGCTC
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
26 11 0.11
27 88 0.85
28 5 0.05
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (27 bp):
TAGGGTAAAATGACCGAAATACCCCAG
Found at i:14830572 original size:49 final size:49
Alignment explanation
Indices: 14830500--14830642 Score: 205
Period size: 49 Copynumber: 2.9 Consensus size: 49
14830490 AGCCGAAGCT
* * *
14830500 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGATCAATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAATA
* * *
14830549 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACTTGCGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAATA
* * *
14830598 ATCCGGTACAAGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACC
14830643 TCACAATAGT
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 83 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCAATA
Found at i:14840583 original size:42 final size:42
Alignment explanation
Indices: 14840474--14840571 Score: 187
Period size: 42 Copynumber: 2.3 Consensus size: 42
14840464 CACGGCCAAG
*
14840474 ACACACGCCCGTGTTCTAGACCGTGTAGCATACACGGTTGAA
1 ACACACACCCGTGTTCTAGACCGTGTAGCATACACGGTTGAA
14840516 ACACACACCCGTGTTCTAGACCGTGTAGCATACACGGTTGAA
1 ACACACACCCGTGTTCTAGACCGTGTAGCATACACGGTTGAA
14840558 ACACACACCCGTGT
1 ACACACACCCGTGT
14840572 CTCTGCCCGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (42 bp):
ACACACACCCGTGTTCTAGACCGTGTAGCATACACGGTTGAA
Found at i:14841590 original size:16 final size:16
Alignment explanation
Indices: 14841569--14841600 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
14841559 TTACCAGTCC
14841569 AGACTAAATCCTTTAT
1 AGACTAAATCCTTTAT
14841585 AGACTAAATCCTTTAT
1 AGACTAAATCCTTTAT
14841601 GTAACGTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
AGACTAAATCCTTTAT
Found at i:14846147 original size:40 final size:40
Alignment explanation
Indices: 14846102--14846268 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
14846092 CGGAATATAA
14846102 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
14846142 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14846182 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14846222 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14846261 CCGGATAT
1 CCGGATAT
14846269 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14846252 original size:80 final size:79
Alignment explanation
Indices: 14846118--14846268 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
14846108 ATAATCACGT
*
14846118 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
14846183 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
14846198 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
14846261 CCGGATAT
64 CCGGATAT
14846269 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:14854147 original size:40 final size:40
Alignment explanation
Indices: 14854102--14854268 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
14854092 CGGAATATAA
14854102 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
14854142 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14854182 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14854222 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14854261 CCGGATAT
1 CCGGATAT
14854269 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14856895 original size:40 final size:40
Alignment explanation
Indices: 14856850--14857016 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
14856840 CGGAATATAA
14856850 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
14856890 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14856930 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14856970 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14857009 CCGGATAT
1 CCGGATAT
14857017 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14857000 original size:80 final size:79
Alignment explanation
Indices: 14856866--14857016 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
14856856 ATAATCACGT
*
14856866 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
14856931 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
14856946 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
14857009 CCGGATAT
64 CCGGATAT
14857017 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:14864904 original size:40 final size:40
Alignment explanation
Indices: 14864859--14865025 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
14864849 CGGAATATAA
14864859 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
14864899 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
14864939 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
14864979 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14865018 CCGGATAT
1 CCGGATAT
14865026 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14865009 original size:80 final size:79
Alignment explanation
Indices: 14864875--14865025 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
14864865 ATAATCACGT
*
14864875 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
14864940 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
14864955 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
14865018 CCGGATAT
64 CCGGATAT
14865026 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:14866765 original size:30 final size:30
Alignment explanation
Indices: 14866720--14866778 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14866710 CTTAACAAGA
14866720 AAATACCTTAAAAATAATAAAAAAAATTAAC
1 AAATACCTTAAAAATAAT-AAAAAAATTAAC
* *
14866751 AAAT-CCTTTAAAATAATAACAAAATTAA
1 AAATACCTTAAAAATAATAAAAAAATTAA
14866779 TAATAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 10 0.38
30 12 0.46
31 4 0.15
ACGTcount: A:0.64, C:0.10, G:0.00, T:0.25
Consensus pattern (30 bp):
AAATACCTTAAAAATAATAAAAAAATTAAC
Found at i:14871624 original size:49 final size:50
Alignment explanation
Indices: 14871546--14871683 Score: 167
Period size: 49 Copynumber: 2.8 Consensus size: 50
14871536 CCATGGGTAA
* *
14871546 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTT-CG
1 AGTGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-CTTACC
* * *
14871596 AG-G-CTGATGCCATGTCCTATACATGGTCTTACACT-AGTTATCACTTACC
1 AGTGTC-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACTTACC
*
14871645 CGTGTCGATGCCATGTCCCAGACATGGTCTTACACTGAC
1 AGTGTCGATGCCATGTCCCAGACATGGTCTTACACTGAC
14871684 ACATCTCATA
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
48 5 0.07
49 36 0.49
50 31 0.42
51 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (50 bp):
AGTGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCACTTACC
Found at i:14871673 original size:50 final size:48
Alignment explanation
Indices: 14871551--14871864 Score: 203
Period size: 46 Copynumber: 6.6 Consensus size: 48
14871541 GGTAAAGTGC
14871551 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAGG
* * * * *
14871599 CTGATGCCATGTCCTATACATGGTCTTACACT-AGTTATCA-CTTACCCGTGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCATCTT---CGAGG
* *
14871650 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-A-CATC-TCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTC-GAGG
* * * *
14871696 CGATG-CATATCCCAGACAT-GTCTTATACTGGCT-TACGTC-TCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CATCTTCGAGG
* * * **
14871741 CTGATG-CATGGCCCAGACAT-GTCTTACACT-AGC-ACTCGTC-TCAATAC
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTTCGA-GG
* * * ** *
14871788 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAGG
14871835 CTGATG-CATGTCCCAGACAT-GTCTTACACT
1 C-GATGCCATGTCCCAGACATGGTCTTACACT
14871865 AGCTCACACA
Statistics
Matches: 209, Mismatches: 35, Indels: 46
0.72 0.12 0.16
Matches are distributed among these distances:
44 11 0.05
45 17 0.08
46 57 0.27
47 30 0.14
48 25 0.12
49 36 0.17
50 28 0.13
51 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTTCGAGG
Found at i:14871813 original size:94 final size:92
Alignment explanation
Indices: 14871651--14871872 Score: 256
Period size: 94 Copynumber: 2.4 Consensus size: 92
14871641 TACCCGTGTC
*
14871651 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATGCATATCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCAATGCATATCCCAGACA
* * *
14871714 TGTCTTATACTGGCT-TACGT-CTCGAGGCT
64 TGTCTTACACTGGCTCT-CATAAT-GAGGCT
* * * *
14871743 GATGCATGGCCCAGACATGTCTTACACTAGCACTCGTCTCAATA-CCAATGCCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTC-ATAGCCAATG-CATATCCCAGACA
*
14871807 TGGTCTTACACTGGCTCTCATAATGTGGCT
64 T-GTCTTACACTGGCTCTCATAATGAGGCT
*
14871837 GATGCATGTCCCAGACATGTCTTACACTAGCTCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACA
14871873 CAAATGACCG
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
90 10 0.09
91 14 0.13
92 16 0.15
93 16 0.15
94 52 0.47
95 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCAATGCATATCCCAGACATG
TCTTACACTGGCTCTCATAATGAGGCT
Found at i:14877266 original size:13 final size:13
Alignment explanation
Indices: 14877248--14877287 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
14877238 GCTTGGTAGG
*
14877248 GACACGCCTGTGT
1 GACACGCCCGTGT
14877261 GACACGCCCGTGT
1 GACACGCCCGTGT
*
14877274 GACACGCCCATGT
1 GACACGCCCGTGT
14877287 G
1 G
14877288 CGATTACTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.17, C:0.35, G:0.30, T:0.17
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:14880239 original size:16 final size:16
Alignment explanation
Indices: 14880209--14880256 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
14880199 GAAAATTAAT
14880209 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
14880224 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
14880241 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
14880256 A
1 A
14880257 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:14880255 original size:11 final size:11
Alignment explanation
Indices: 14880200--14880270 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
14880190 ATAGCTTAAG
*
14880200 AAAATTAATAT
1 AAAATTAAAAT
14880211 AAAATCTAAAAT
1 AAAAT-TAAAAT
*
14880223 AATAA-T-AATT
1 AA-AATTAAAAT
*
14880233 AAAAAT-AAAT
1 AAAATTAAAAT
14880243 AAAATTAAAAT
1 AAAATTAAAAT
*
14880254 AAACTTAAAAT
1 AAAATTAAAAT
*
14880265 AGAATT
1 AAAATT
14880271 TCCTATTTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 24 0.49
12 7 0.14
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAAATTAAAAT
Found at i:14885622 original size:29 final size:29
Alignment explanation
Indices: 14885589--14885681 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 29
14885579 TGACGAGATT
* *
14885589 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
*
14885618 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
* * * *
14885647 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCATGCTGGAAAAATAA
14885676 GGCACT
1 GGCACT
14885682 GGGTGTGCGA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAAAATAA
Found at i:14885694 original size:29 final size:29
Alignment explanation
Indices: 14885589--14885694 Score: 115
Period size: 29 Copynumber: 3.7 Consensus size: 29
14885579 TGACGAGATT
* *
14885589 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
*
14885618 GGCACTAAGTGTGC-ATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGA-GCTGGAAAAATAA
* * * *
14885647 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGAGCTGGAAAAATAA
**
14885676 GGCACTGGGTGTGCGAGCT
1 GGCACTAAGTGTGCGAGCT
14885695 CGGAGGGTAT
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
29 64 0.98
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAGCTGGAAAAATAA
Found at i:14888251 original size:40 final size:40
Alignment explanation
Indices: 14888201--14888382 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
14888191 GCCACTCGTT
* * * ** *
14888201 CAAATACCTTCGGGACATGGCCCGGAGATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
14888241 CAAATGCCTTCGGGACTTATCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
14888281 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * *
14888321 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14888362 CAAA-GCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGACTTAGCC
14888383 TGGACATCAT
Statistics
Matches: 127, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 3 0.02
40 113 0.89
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14892054 original size:16 final size:16
Alignment explanation
Indices: 14892024--14892071 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
14892014 AGAAATTAAT
14892024 ATAAAATCT-AAAAT-A
1 ATAAAAT-TAAAAATAA
14892039 ATAATAATTAAAAATAA
1 ATAA-AATTAAAAATAA
14892056 ATAAAATT-AAAATAA
1 ATAAAATTAAAAATAA
14892071 A
1 A
14892072 CTTAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
15 13 0.43
16 12 0.40
17 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (16 bp):
ATAAAATTAAAAATAA
Found at i:14892070 original size:11 final size:11
Alignment explanation
Indices: 14892016--14892085 Score: 56
Period size: 11 Copynumber: 6.5 Consensus size: 11
14892006 ATAGCTTAAG
*
14892016 AAATTAATATA
1 AAATTAAAATA
14892027 AAATCTAAAATA
1 AAAT-TAAAATA
*
14892039 ATAA-T-AATTA
1 A-AATTAAAATA
*
14892049 AAAAT-AAATA
1 AAATTAAAATA
14892059 AAATTAAAATA
1 AAATTAAAATA
*
14892070 AACTTAAAATA
1 AAATTAAAATA
*
14892081 GAATT
1 AAATT
14892086 TCCTATTTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
9 2 0.04
10 14 0.29
11 23 0.48
12 7 0.15
13 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (11 bp):
AAATTAAAATA
Found at i:14900013 original size:38 final size:38
Alignment explanation
Indices: 14899962--14900034 Score: 146
Period size: 38 Copynumber: 1.9 Consensus size: 38
14899952 AGCAACTGCC
14899962 AGAACCATTATTAATGTAGGCACAGGAGAGCTAACGCT
1 AGAACCATTATTAATGTAGGCACAGGAGAGCTAACGCT
14900000 AGAACCATTATTAATGTAGGCACAGGAGAGCTAAC
1 AGAACCATTATTAATGTAGGCACAGGAGAGCTAAC
14900035 ACTTCGTGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (38 bp):
AGAACCATTATTAATGTAGGCACAGGAGAGCTAACGCT
Found at i:14904764 original size:18 final size:18
Alignment explanation
Indices: 14904741--14904780 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
14904731 CATAGAACGA
14904741 GACACGGTCGTGCGATAC
1 GACACGGTCGTGCGATAC
14904759 GACACGGTCGTGCGATAC
1 GACACGGTCGTGCGATAC
14904777 GACA
1 GACA
14904781 ATGTGAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.25, C:0.28, G:0.33, T:0.15
Consensus pattern (18 bp):
GACACGGTCGTGCGATAC
Found at i:14909347 original size:14 final size:14
Alignment explanation
Indices: 14909325--14909354 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14909315 GATAAATATT
*
14909325 TTATTTGTTCTTAA
1 TTATGTGTTCTTAA
14909339 TTATGTGTTCTTAA
1 TTATGTGTTCTTAA
14909353 TT
1 TT
14909355 CTTGTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.07, G:0.10, T:0.63
Consensus pattern (14 bp):
TTATGTGTTCTTAA
Found at i:14910437 original size:21 final size:21
Alignment explanation
Indices: 14910403--14910455 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
14910393 TAAATTATTC
* *
14910403 AATAAAAGTTATAAAAAATAAA
1 AATAAAA-TAATAAAAAAGAAA
* *
14910425 ATTAAAATAATAATAAAGAAA
1 AATAAAATAATAAAAAAGAAA
*
14910446 AATGAAATAA
1 AATAAAATAA
14910456 AAAGTACTTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 19 0.76
22 6 0.24
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.23
Consensus pattern (21 bp):
AATAAAATAATAAAAAAGAAA
Found at i:14913132 original size:13 final size:13
Alignment explanation
Indices: 14913114--14913140 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14913104 TTAACGAGTA
14913114 CATCTTCAATAAT
1 CATCTTCAATAAT
14913127 CATCTTCAATAAT
1 CATCTTCAATAAT
14913140 C
1 C
14913141 CCTCTAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (13 bp):
CATCTTCAATAAT
Found at i:14922921 original size:40 final size:39
Alignment explanation
Indices: 14922864--14922971 Score: 92
Period size: 40 Copynumber: 2.7 Consensus size: 39
14922854 CAAAAATATG
* * *
14922864 TGGACAAGTCA-CGAGTATTACAGATAAATTGTCAGTATTA
1 TGGACAAGCCATC-AGTATT-CAGATAAATTGACAGTATCA
** *
14922904 TGGACAAGCCATCAGTATTGTGAATAAATTGACAGTATCG
1 TGGACAAGCCATCAGTATTCAG-ATAAATTGACAGTATCA
** *
14922944 CAGACAAGCCATCAGTATTGCATATAAA
1 TGGACAAGCCATCAGTATT-CAGATAAA
14922972 CTATCAGATC
Statistics
Matches: 54, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
39 1 0.02
40 52 0.96
41 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.27
Consensus pattern (39 bp):
TGGACAAGCCATCAGTATTCAGATAAATTGACAGTATCA
Found at i:14924249 original size:16 final size:17
Alignment explanation
Indices: 14924217--14924249 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14924207 CAAGGTGGCA
14924217 AAAACAAAATAAAGGAG
1 AAAACAAAATAAAGGAG
14924234 AAAACAAAAT-AAGGAG
1 AAAACAAAATAAAGGAG
14924250 GGAAAGCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.70, C:0.06, G:0.18, T:0.06
Consensus pattern (17 bp):
AAAACAAAATAAAGGAG
Found at i:14939558 original size:16 final size:16
Alignment explanation
Indices: 14939539--14939572 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14939529 ATATTAATGT
**
14939539 TATTTAATTTTAAAAA
1 TATTTAATACTAAAAA
14939555 TATTTAATACTAAAAA
1 TATTTAATACTAAAAA
14939571 TA
1 TA
14939573 ATACAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
TATTTAATACTAAAAA
Found at i:14945670 original size:38 final size:38
Alignment explanation
Indices: 14945621--14945705 Score: 125
Period size: 38 Copynumber: 2.2 Consensus size: 38
14945611 ATTAGACATG
*
14945621 CTTAACCTGTATTAGGTTCAATAGTAACAGTAGGCATA
1 CTTAACATGTATTAGGTTCAATAGTAACAGTAGGCATA
* * *
14945659 CTTAACATGTATTTGGTTCAATAGTAGCAGTAGGCATG
1 CTTAACATGTATTAGGTTCAATAGTAACAGTAGGCATA
*
14945697 CTGAACATG
1 CTTAACATG
14945706 CAATCAGTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (38 bp):
CTTAACATGTATTAGGTTCAATAGTAACAGTAGGCATA
Found at i:14949993 original size:27 final size:28
Alignment explanation
Indices: 14949963--14950032 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
14949953 ATAGTGAATC
*
14949963 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
14949990 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
14950018 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14950033 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:14953745 original size:17 final size:17
Alignment explanation
Indices: 14953723--14953755 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14953713 AGGAAATAAA
14953723 AGAAAATGA-GAAGAGAT
1 AGAAAA-GATGAAGAGAT
14953740 AGAAAAGATGAAGAGA
1 AGAAAAGATGAAGAGA
14953756 AGTCTTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.61, C:0.00, G:0.30, T:0.09
Consensus pattern (17 bp):
AGAAAAGATGAAGAGAT
Found at i:14956923 original size:25 final size:25
Alignment explanation
Indices: 14956892--14956941 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14956882 AACATGACAT
14956892 TAACAAACCAACTATCAACTAAAGA
1 TAACAAACCAACTATCAACTAAAGA
*
14956917 TAACAAACCAGCTATCAACTAAAGA
1 TAACAAACCAACTATCAACTAAAGA
14956942 CTTCCTAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.54, C:0.24, G:0.06, T:0.16
Consensus pattern (25 bp):
TAACAAACCAACTATCAACTAAAGA
Found at i:14957347 original size:27 final size:27
Alignment explanation
Indices: 14957316--14957370 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
14957306 ATACATGAAT
*
14957316 TCATTTCAATATT-CATATCCCATTTCA
1 TCATTTC-ATATTCCATATCCCATCTCA
*
14957343 TCATTTCATATTCCATTTCCCATCTCA
1 TCATTTCATATTCCATATCCCATCTCA
14957370 T
1 T
14957371 AACCATCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 5 0.20
27 20 0.80
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.45
Consensus pattern (27 bp):
TCATTTCATATTCCATATCCCATCTCA
Found at i:14958010 original size:36 final size:34
Alignment explanation
Indices: 14957970--14958036 Score: 80
Period size: 35 Copynumber: 1.9 Consensus size: 34
14957960 ATTTATTTAT
* * *
14957970 TTTCATTTTAATTCATTATTATATAATATATATGCA
1 TTTCATGTT-ATTCATTATAACAT-ATATATATGCA
*
14958006 TTTCATGTTATTTATTATAACATATATATAT
1 TTTCATGTTATTCATTATAACATATATATAT
14958037 TAAGTTATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 8 0.30
35 11 0.41
36 8 0.30
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (34 bp):
TTTCATGTTATTCATTATAACATATATATATGCA
Found at i:14961257 original size:40 final size:40
Alignment explanation
Indices: 14961212--14961378 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
14961202 CGGAATATAA
14961212 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
14961252 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** ** *
14961292 CCGGATATAGCCACTAGCACATTTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * **
14961332 CCGGATATAATTTCCAGCATAATTATCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
14961371 CCGGATAT
1 CCGGATAT
14961379 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 14 0.13
40 90 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:14963702 original size:40 final size:40
Alignment explanation
Indices: 14963658--14963843 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
14963648 GCTACTCGTT
* * *
14963658 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
14963698 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
14963738 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
14963778 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14963819 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14963844 CATCGTTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 114 0.88
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14967363 original size:40 final size:40
Alignment explanation
Indices: 14967319--14967428 Score: 125
Period size: 40 Copynumber: 2.7 Consensus size: 40
14967309 ACTATGTTTG
* *
14967319 GCACTTAGTGTGCGTTTTGAGATAGCTTTGGCTATATATA
1 GCACTTAGTGTGCGTATTGAGATAGCTTCGGCTATATATA
* *
14967359 GCACTTAGTGTGCG-AGTTG-GAATAGCTTCGGCTATATGTG
1 GCACTTAGTGTGCGTA-TTGAG-ATAGCTTCGGCTATATATA
* *
14967399 GCACTAAGTGTACGATATTGAGATAGCTTC
1 GCACTTAGTGTGCG-TATTGAGATAGCTTC
14967429 AGCTTAATGT
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
39 1 0.02
40 45 0.76
41 11 0.19
42 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.35
Consensus pattern (40 bp):
GCACTTAGTGTGCGTATTGAGATAGCTTCGGCTATATATA
Found at i:14967439 original size:41 final size:44
Alignment explanation
Indices: 14967380--14967476 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 44
14967370 GCGAGTTGGA
* *
14967380 ATAGCTTCGGC-TATA-TG-TGGCACTAAGTGTACGATATTGAG
1 ATAGCTTCAGCTTATAGTGATGGCACTAAGTGTACGATATCGAG
* * **
14967421 ATAGCTTCAGCTTA-ATGTGATGGCATTAAGTGTGCGATATCGTT
1 ATAGCTTCAGCTTATA-GTGATGGCACTAAGTGTACGATATCGAG
14967465 ATAGCTTCAGCT
1 ATAGCTTCAGCT
14967477 AATCATTTTT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
41 11 0.24
42 2 0.04
43 2 0.04
44 31 0.67
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (44 bp):
ATAGCTTCAGCTTATAGTGATGGCACTAAGTGTACGATATCGAG
Found at i:14973655 original size:39 final size:39
Alignment explanation
Indices: 14973578--14973761 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
14973568 GCTACTCGTT
* * *
14973578 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
14973618 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
*
14973657 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
14973697 CAAATGCCTTCGGATCTTAGTCC-GATATAGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14973737 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
14973762 CATCATTCGA
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
39 58 0.45
40 71 0.55
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14973745 original size:79 final size:79
Alignment explanation
Indices: 14973578--14973761 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 79
14973568 GCTACTCGTT
* * *
14973578 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCACAAATGCCTTCGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
14973642 ATTTAGTAACTCGCA
65 ATATAGTAACTAGCA
* **
14973657 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCC-
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGA-CTTAACCCG
*
14973720 GATATAGTCACTTAGCA
64 GATATAGTAAC-TAGCA
14973737 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14973762 CATCATTCGA
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.03
79 68 0.76
80 19 0.21
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
TATAGTAACTAGCA
Found at i:14981642 original size:40 final size:40
Alignment explanation
Indices: 14981598--14981778 Score: 217
Period size: 40 Copynumber: 4.5 Consensus size: 40
14981588 GCTACTCGTT
* * *
14981598 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
14981638 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
14981678 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
14981718 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14981759 CAAA-GCCTTCGGGACTTAGC
1 CAAATGCCTTCGGGACTTAGC
14981779 GGACATCATT
Statistics
Matches: 127, Mismatches: 10, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
39 3 0.02
40 111 0.87
41 13 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14989566 original size:40 final size:40
Alignment explanation
Indices: 14989522--14989706 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
14989512 GCTACTCGTT
* * *
14989522 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
14989562 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
14989602 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
14989642 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14989683 CAAA-GCCTTC-GGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14989707 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
39 13 0.10
40 109 0.83
41 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:14997607 original size:40 final size:40
Alignment explanation
Indices: 14997563--14997748 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
14997553 GCTACTCGTT
* * *
14997563 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
14997603 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
14997643 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
14997683 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
14997724 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
14997749 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:15002060 original size:38 final size:38
Alignment explanation
Indices: 15001991--15002096 Score: 110
Period size: 38 Copynumber: 2.8 Consensus size: 38
15001981 CTGTATCATG
* * **
15001991 TATTCAATTCAATCAATAACATTAGATATGCTTAAC-CTA
1 TATTCAGTTCAA-CAATAACAGTAGGCATGCTTAACAC-A
*
15002030 TATT-AGGTTCAA-AATTAATAGTAGGCATGCTTAACACA
1 TATTCA-GTTCAACAA-TAACAGTAGGCATGCTTAACACA
15002068 TATTCAGTTCAACAATAACAGTAGGCATG
1 TATTCAGTTCAACAATAACAGTAGGCATG
15002097 TTGAACAAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
37 2 0.04
38 41 0.73
39 13 0.23
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (38 bp):
TATTCAGTTCAACAATAACAGTAGGCATGCTTAACACA
Found at i:15002786 original size:21 final size:21
Alignment explanation
Indices: 15002762--15002809 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
15002752 GATTGATTTC
*
15002762 AAGATTTGTCAAG-ATTAGCAA
1 AAGATTTGGCAAGAATT-GCAA
*
15002783 AAGATTTGGCAAGAATTGTAA
1 AAGATTTGGCAAGAATTGCAA
15002804 AAGATT
1 AAGATT
15002810 GAGTAGTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.44, C:0.06, G:0.21, T:0.29
Consensus pattern (21 bp):
AAGATTTGGCAAGAATTGCAA
Found at i:15003286 original size:13 final size:13
Alignment explanation
Indices: 15003268--15003293 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15003258 CTTAACCATC
15003268 AAGCCTATTAAAA
1 AAGCCTATTAAAA
15003281 AAGCCTATTAAAA
1 AAGCCTATTAAAA
15003294 TTTCTTATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (13 bp):
AAGCCTATTAAAA
Found at i:15008214 original size:30 final size:30
Alignment explanation
Indices: 15008180--15008241 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
15008170 AATGTTACTA
15008180 CTACCATGTTTTTAAACCAAAACTGGAAAT
1 CTACCATGTTTTTAAACCAAAACTGGAAAT
15008210 CTACCATGTTTTTAAACCAAAACTGGAAAT
1 CTACCATGTTTTTAAACCAAAACTGGAAAT
15008240 CT
1 CT
15008242 TATCAATTAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (30 bp):
CTACCATGTTTTTAAACCAAAACTGGAAAT
Found at i:15010643 original size:20 final size:21
Alignment explanation
Indices: 15010605--15010645 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
15010595 CAATTTGATT
15010605 ATTCTAAAATAATTATAAAAA
1 ATTCTAAAATAATTATAAAAA
15010626 ATTC-AAAATAATCT-TAAAAA
1 ATTCTAAAATAAT-TATAAAAA
15010646 TATATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (21 bp):
ATTCTAAAATAATTATAAAAA
Found at i:15016189 original size:19 final size:19
Alignment explanation
Indices: 15016165--15016201 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
15016155 CACTCCCGCG
15016165 AACCTCACATCTTATGGCA
1 AACCTCACATCTTATGGCA
15016184 AACCTCACATCTTATGGC
1 AACCTCACATCTTATGGC
15016202 GGGATTACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.30, C:0.32, G:0.11, T:0.27
Consensus pattern (19 bp):
AACCTCACATCTTATGGCA
Found at i:15028484 original size:48 final size:47
Alignment explanation
Indices: 15028426--15028613 Score: 216
Period size: 48 Copynumber: 3.9 Consensus size: 47
15028416 GGGTGAATTA
* * * *
15028426 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
* * *
15028473 ACCGA-GACCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAATG
1 -CCGATG-CCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGA-G
* * *
15028522 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCG-AG
* * *
15028570 GCGATGCCATGTCCCATACATGGTCTTACACTAGCACACATATC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC
15028614 ACCCAAATGT
Statistics
Matches: 121, Mismatches: 15, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.01
48 118 0.98
49 2 0.02
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAG
Found at i:15028591 original size:96 final size:96
Alignment explanation
Indices: 15028426--15028604 Score: 270
Period size: 96 Copynumber: 1.9 Consensus size: 96
15028416 GGGTGAATTA
* *
15028426 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGACCGAGACCATGTCCCAG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGAGACCATGTCCCAG
15028491 ACATGGTCTTACACTAGCTCTCATCTCAATG
66 ACATGGTCTTACACTAGCTCTCATCTCAATG
* * * **
15028522 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGGCGATG-CCATGTCCCA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGA-GACCATGTCCCA
*
15028586 TACATGGTCTTACACTAGC
65 GACATGGTCTTACACTAGC
15028605 ACACATATCA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
96 73 0.99
97 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCGAGACCGAGACCATGTCCCAG
ACATGGTCTTACACTAGCTCTCATCTCAATG
Found at i:15034449 original size:24 final size:24
Alignment explanation
Indices: 15034417--15034623 Score: 342
Period size: 24 Copynumber: 8.6 Consensus size: 24
15034407 TATCTCAAAT
*
15034417 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
15034441 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
15034465 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
15034489 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
15034513 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
15034537 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
15034561 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
15034585 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
15034609 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
15034624 ACATAATAAG
Statistics
Matches: 177, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 177 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:15042183 original size:24 final size:24
Alignment explanation
Indices: 15042151--15042333 Score: 294
Period size: 24 Copynumber: 7.6 Consensus size: 24
15042141 TATCTCAAAT
*
15042151 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
*
15042175 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
15042199 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
15042223 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
15042247 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
15042271 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
* *
15042295 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
15042319 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
15042334 ACATAATAAG
Statistics
Matches: 155, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 155 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:15042227 original size:72 final size:72
Alignment explanation
Indices: 15042151--15042355 Score: 297
Period size: 72 Copynumber: 2.8 Consensus size: 72
15042141 TATCTCAAAT
* *
15042151 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
*
15042216 TACTATG
66 TACTATA
*
15042223 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
*
15042288 TGCTATA
66 TACTATA
* * * *
15042295 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGA-ACA-TAATAAGCACTATGTGTGC
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACT-AT-AGCACTATGTGTGC
15042356 CACATTCGGT
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
70 1 0.01
71 3 0.02
72 117 0.97
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (72 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTCACTATAGCACTATGTGTGCGATT
TACTATA
Found at i:15042346 original size:48 final size:48
Alignment explanation
Indices: 15042151--15042355 Score: 234
Period size: 48 Copynumber: 4.3 Consensus size: 48
15042141 TATCTCAAAT
* * * * *
15042151 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGA-TTCACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACAT-AATATA
* ** * *
15042199 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATA
** **
15042247 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATA
* *
15042295 GCACTATGTGTGCGATTTGCTATAGCTCTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCG-ACATAATATA
15042343 GCACTATGTGTGC
1 GCACTATGTGTGC
15042356 CACATTCGGT
Statistics
Matches: 145, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
48 139 0.96
49 6 0.04
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGACATAATATA
Found at i:15044290 original size:24 final size:24
Alignment explanation
Indices: 15044258--15044311 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
15044248 AATGTCTAAA
15044258 GTGCGATTTGCTATAGCACTATGT
1 GTGCGATTTGCTATAGCACTATGT
*
15044282 GTGCGATTTGCTATAGCTCTATGT
1 GTGCGATTTGCTATAGCACTATGT
*
15044306 GCGCGA
1 GTGCGA
15044312 ACATAATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.35
Consensus pattern (24 bp):
GTGCGATTTGCTATAGCACTATGT
Found at i:15049850 original size:48 final size:48
Alignment explanation
Indices: 15049785--15049914 Score: 145
Period size: 48 Copynumber: 2.7 Consensus size: 48
15049775 TTACTACTGG
* * * * * *
15049785 CATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGA-GACCGACGT
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAATG-CCGACGC
* * * *
15049833 TATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAATGCCGACGC
*
15049881 CATGTCCCAGACATGGTCTTACACTAGCACACAT
1 CATGTCCCAGACATGGTCTTACACTAGCTCACAT
15049915 ATCACCCAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 66 0.99
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCACATCTCAATGCCGACGC
Found at i:15054143 original size:26 final size:26
Alignment explanation
Indices: 15054089--15054143 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
15054079 ATTTTTCTTG
*
15054089 AAATTTTACCGAGGGTAAAATCGTTA
1 AAATTTTACCGAGGGTAAAATCGTCA
*
15054115 AAATTTTACCG-GGAGTAAAATTGTCA
1 AAATTTTACCGAGG-GTAAAATCGTCA
15054141 AAA
1 AAA
15054144 AATTTAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.42, C:0.11, G:0.18, T:0.29
Consensus pattern (26 bp):
AAATTTTACCGAGGGTAAAATCGTCA
Found at i:15056729 original size:87 final size:87
Alignment explanation
Indices: 15056583--15056758 Score: 307
Period size: 87 Copynumber: 2.0 Consensus size: 87
15056573 AAACGTAAAT
* * *
15056583 GTAAAGGTAATTCGAGATAGCTTGAAAGCAGCCTCTGTTCGAAAAAAGTTTTATGCTGATTTGAA
1 GTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAGAAAAAAGTCTTATGCTGATTTGAA
15056648 GAGAAAGGAAATAGAATTTCAG
66 GAGAAAGGAAATAGAATTTCAG
* *
15056670 GTAAAGGTAATTCGAGATAGTTTGAAAGCAACCTCTGTTAGACAAAAGTCTTATGCTGATTTGAA
1 GTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAGAAAAAAGTCTTATGCTGATTTGAA
15056735 GAGAAAGGAAATAGAATTTCAG
66 GAGAAAGGAAATAGAATTTCAG
15056757 GT
1 GT
15056759 TGGTGACAAG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.38, C:0.10, G:0.24, T:0.28
Consensus pattern (87 bp):
GTAAAGGTAATTCGAGATAGCTTGAAAGCAACCTCTGTTAGAAAAAAGTCTTATGCTGATTTGAA
GAGAAAGGAAATAGAATTTCAG
Found at i:15059025 original size:27 final size:27
Alignment explanation
Indices: 15059003--15059278 Score: 383
Period size: 27 Copynumber: 10.3 Consensus size: 27
15058993 TTTGGTTTAC
15059003 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * *
15059030 AAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
15059057 AAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * **
15059084 AAAATTACCAAAATACCCTTAGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
15059111 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * *
15059138 AAAATTACTAAAATACCCTTTGTTTAT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
15059165 -AAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
15059191 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
15059218 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
15059245 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
15059272 GAAATTA
1 AAAATTA
15059279 TTGAAATACC
Statistics
Matches: 215, Mismatches: 33, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.10
27 193 0.90
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:15059285 original size:27 final size:27
Alignment explanation
Indices: 15059003--15059350 Score: 332
Period size: 27 Copynumber: 12.9 Consensus size: 27
15058993 TTTGGTTTAC
*
15059003 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * * *
15059030 AAAATTACTAGAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
15059057 AAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* **
15059084 AAAATTACCAAAATA-CCCTTAGTTTAC
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
15059111 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
15059138 AAAATTACTAAAATACCCTTTG-TTTAT
1 AAAATTACCAAAATACCC-CTGATTTGT
15059165 -AAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
*
15059191 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
15059218 AAAATTATCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCCTGA-TTTGT
15059245 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *** **
15059272 GAAATTATTGAAATA-CCCTCGACCTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
*** *
15059299 AAAATTATTGAAATA-CCCTCGACTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* *
15059326 ATAATTACCAAAGTACCCCTGATTT
1 AAAATTACCAAAATACCCCTGATTT
15059351 ACAGAAGTAC
Statistics
Matches: 268, Mismatches: 42, Indels: 22
0.81 0.13 0.07
Matches are distributed among these distances:
25 1 0.00
26 28 0.10
27 228 0.85
28 11 0.04
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Done.