Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 75 of 433
Found at i:21750345 original size:134 final size:136
Alignment explanation
Indices: 21750038--21750372 Score: 539
Period size: 134 Copynumber: 2.4 Consensus size: 136
21750028 CCCTTCGGGA
* *
21750038 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
21750103 CTTCACATCCATCACATCGGCCATTAGGTCTTATCTCATATATACACTTTCACATTCATCACATT
66 CTTCACATCCATCACATCGGCCATTAGG-----TCTCATATATACACTTTCACATTCATCACATT
*
21750168 GGCCATTCGGC
126 GGCCATTAGGC
21750179 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
21750244 TTTCACATTCATCACATTGGCCATTAGG-C-CATATATACACTTTCACATTCATCACATTGGCCA
66 CTTCACATCCATCACATCGGCCATTAGGTCTCATATATACACTTTCACATTCATCACATTGGCCA
21750307 TTAGGC
131 TTAGGC
* *
21750313 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATA
21750373 CATATCTTGT
Statistics
Matches: 186, Mismatches: 8, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
134 97 0.52
135 1 0.01
141 88 0.47
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (136 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
CTTCACATCCATCACATCGGCCATTAGGTCTCATATATACACTTTCACATTCATCACATTGGCCA
TTAGGC
Found at i:21753287 original size:28 final size:28
Alignment explanation
Indices: 21753248--21753351 Score: 77
Period size: 28 Copynumber: 3.7 Consensus size: 28
21753238 CATGAAACGA
21753248 AATC-CGCACACACAGTGCCCACTGACC
1 AATCTCGCACACACAGTGCCCACTGACC
* *** * **
21753275 AATCTCGCACACATAGTGCTCGGTTAAAA
1 AATCTCGCACACACAGTGC-CCACTGACC
*
21753304 AAT-TCGCACACACACAGTGTCCACTGACC
1 AATCTCG--CACACACAGTGCCCACTGACC
* *
21753333 GATCTCGCACACATAGTGC
1 AATCTCGCACACACAGTGC
21753352 TTGATTAAAG
Statistics
Matches: 54, Mismatches: 18, Indels: 9
0.67 0.22 0.11
Matches are distributed among these distances:
27 4 0.07
28 26 0.48
29 11 0.20
30 13 0.24
ACGTcount: A:0.31, C:0.35, G:0.16, T:0.18
Consensus pattern (28 bp):
AATCTCGCACACACAGTGCCCACTGACC
Found at i:21753313 original size:56 final size:56
Alignment explanation
Indices: 21753247--21753380 Score: 196
Period size: 58 Copynumber: 2.4 Consensus size: 56
21753237 ACATGAAACG
*
21753247 AAATCCGCACACACAGTGCCCACTGACCAATCTCGCACACATAGTGCTCGGTTAAA
1 AAATCCGCACACACAGTGCCCACTGACCAATCTCGCACACATAGTGCTCGATTAAA
* * * *
21753303 AAATTCGCACACACACAGTGTCCACTGACCGATCTCGCACACATAGTGCTTGATTAAA
1 AAA-TC-CGCACACACAGTGCCCACTGACCAATCTCGCACACATAGTGCTCGATTAAA
*
21753361 GAATCCGCACACACAGTGCC
1 AAATCCGCACACACAGTGCC
21753381 TCAATTCATT
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
56 16 0.24
57 4 0.06
58 48 0.71
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.19
Consensus pattern (56 bp):
AAATCCGCACACACAGTGCCCACTGACCAATCTCGCACACATAGTGCTCGATTAAA
Found at i:21753403 original size:25 final size:25
Alignment explanation
Indices: 21753366--21753417 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
21753356 TTAAAGAATC
*
21753366 CGCACACACAGTGCCTCA-ATTCATT
1 CGCACACAAAGTGCCT-ATATTCATT
*
21753391 CGCACACAAAGTGTCTATATTCATT
1 CGCACACAAAGTGCCTATATTCATT
21753416 CG
1 CG
21753418 TTATTACACA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (25 bp):
CGCACACAAAGTGCCTATATTCATT
Found at i:21753630 original size:40 final size:40
Alignment explanation
Indices: 21753586--21753736 Score: 266
Period size: 40 Copynumber: 3.8 Consensus size: 40
21753576 CACATCATCG
* * * *
21753586 GCACGAATACCCTTCAGGACTTAGCCCGGATGTAACACCA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
21753626 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
21753666 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
1 GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
21753706 GCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 GCACGAATGCTCTTCGGGACTTAGCCCGGAT
21753737 CATCGTCGAG
Statistics
Matches: 107, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 107 1.00
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (40 bp):
GCACGAATGCTCTTCGGGACTTAGCCCGGATGTAACACTA
Found at i:21753819 original size:38 final size:38
Alignment explanation
Indices: 21753772--21753883 Score: 88
Period size: 38 Copynumber: 2.9 Consensus size: 38
21753762 GAAATCTCCA
*
21753772 CACAAAGCCAGCGAAT-TTTAATCCGGACATAATCTCTG
1 CACAAAGCCAGCGAATCTTT-ACCCGGACATAATCTCTG
* * * *
21753810 CACATAGCCATCGGATCTTTACCCGGGCATAATCTC--
1 CACAAAGCCAGCGAATCTTTACCCGGACATAATCTCTG
* * *
21753846 CACATATAGTCATC-AGATCTTTACCCGGGCATAATCTC
1 CACA-A-AGCCAGCGA-ATCTTTACCCGGACATAATCTC
21753884 CACATACAGT
Statistics
Matches: 62, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
36 4 0.06
38 55 0.89
39 3 0.05
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (38 bp):
CACAAAGCCAGCGAATCTTTACCCGGACATAATCTCTG
Found at i:21753884 original size:38 final size:38
Alignment explanation
Indices: 21753794--21753944 Score: 167
Period size: 38 Copynumber: 4.0 Consensus size: 38
21753784 GAATTTTAAT
** * * *
21753794 CCGGACATAATCTCTGCACATAGCCATCGGATCTTTAC
1 CCGGACATAATCTCCACATATAGTCATCAGATCTTTAC
*
21753832 CCGGGCATAATCTCCACATATAGTCATCAGATCTTTAC
1 CCGGACATAATCTCCACATATAGTCATCAGATCTTTAC
* * *
21753870 CCGGGCATAATCTCCACATACAGTCATCAGGTCTTTAC
1 CCGGACATAATCTCCACATATAGTCATCAGATCTTTAC
* * * * * *
21753908 CCGAACACAATCTCTACTTATAGTCATCGGGTCTTTA
1 CCGGACATAATCTCCACATATAGTCATCAGATCTTTA
21753945 AGCCTGGATT
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 98 1.00
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (38 bp):
CCGGACATAATCTCCACATATAGTCATCAGATCTTTAC
Found at i:21755954 original size:47 final size:47
Alignment explanation
Indices: 21755891--21756373 Score: 768
Period size: 47 Copynumber: 10.3 Consensus size: 47
21755881 CCCTTCGGGA
* * *
21755891 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * * *
21755938 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAAGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
21755985 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
21756032 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
21756079 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
21756126 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
21756173 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
21756220 TTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* **
21756267 CTTATCACATATATACACTGTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
21756314 CTTGTCACATATATGCACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
21756361 CTTATCACATATA
1 CTTATCACATATA
21756374 CATATCTTGT
Statistics
Matches: 398, Mismatches: 38, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 398 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:21759345 original size:40 final size:40
Alignment explanation
Indices: 21759253--21759472 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
21759243 ACCCAAGTAT
* ** * *
21759253 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
21759291 CTT-TGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
21759330 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * * *
21759370 CTTCGGGTTTTGGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
21759410 CTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAATGC
21759451 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
21759473 CATTCGAATA
Statistics
Matches: 146, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
37 6 0.04
38 18 0.12
39 9 0.06
40 84 0.58
41 26 0.18
42 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:21763971 original size:25 final size:25
Alignment explanation
Indices: 21763954--21764064 Score: 111
Period size: 25 Copynumber: 4.4 Consensus size: 25
21763944 TATCTTTGTA
*
21763954 TATTATTTATTATATTATTATATAT
1 TATTATATATTATATTATTATATAT
* *
21763979 TATTATATATTATATTA-CATACAT
1 TATTATATATTATATTATTATATAT
*
21764003 T-TTACTATATATATATTATTATTTAT
1 TATTA-TATAT-TATATTATTATATAT
* * *
21764029 ATATTATCTATCATATTGTT-TATAT
1 -TATTATATATTATATTATTATATAT
21764054 TATTATATATT
1 TATTATATATT
21764065 TTGTTTATAA
Statistics
Matches: 69, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
23 3 0.04
24 20 0.29
25 27 0.39
26 11 0.16
27 5 0.07
28 3 0.04
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.59
Consensus pattern (25 bp):
TATTATATATTATATTATTATATAT
Found at i:21764054 original size:21 final size:20
Alignment explanation
Indices: 21764028--21764073 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
21764018 TTATTATTTA
21764028 TATATTATCTATCATA-TTGTT
1 TATATTAT-TAT-ATATTTGTT
21764049 TATATTATTATATATTTTGTT
1 TATATTATTATATA-TTTGTT
21764070 TATA
1 TATA
21764074 AATTTTATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.13
20 3 0.13
21 17 0.74
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (20 bp):
TATATTATTATATATTTGTT
Found at i:21764057 original size:12 final size:12
Alignment explanation
Indices: 21763952--21764059 Score: 57
Period size: 12 Copynumber: 8.9 Consensus size: 12
21763942 TTTATCTTTG
21763952 TATATTATT-TAT
1 TATATTATTAT-T
*
21763964 TATATTATTATA
1 TATATTATTATT
21763976 TATTATTA-TATAT
1 TA-TATTATTAT-T
*
21763989 TATATTACATACATT
1 TATATT--AT-TATT
* *
21764004 T-TACTA-TATA
1 TATATTATTATT
21764014 TATATTATTATT
1 TATATTATTATT
*
21764026 TATA-TATTATC
1 TATATTATTATT
*
21764037 TATCA-TATTGTT
1 TAT-ATTATTATT
21764049 TATATTATTAT
1 TATATTATTAT
21764060 ATATTTTGTT
Statistics
Matches: 73, Mismatches: 12, Indels: 22
0.68 0.11 0.21
Matches are distributed among these distances:
10 3 0.04
11 14 0.19
12 40 0.55
13 8 0.11
14 4 0.05
15 2 0.03
16 2 0.03
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (12 bp):
TATATTATTATT
Found at i:21764359 original size:16 final size:16
Alignment explanation
Indices: 21764340--21764371 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
21764330 TTTAAATATC
*
21764340 TTTATTTTTATTTTAT
1 TTTATTTATATTTTAT
21764356 TTTATTTATATTTTAT
1 TTTATTTATATTTTAT
21764372 ATGTTTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTATTTATATTTTAT
Found at i:21772864 original size:14 final size:14
Alignment explanation
Indices: 21772833--21772873 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
21772823 ATTTAGATTG
21772833 CATTTTA-TAT-GAT
1 CATTTTAGTATAG-T
21772846 CATTTTAGTATAGT
1 CATTTTAGTATAGT
*
21772860 CATTTTGGTATAGT
1 CATTTTAGTATAGT
21772874 TATATATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 7 0.28
14 17 0.68
15 1 0.04
ACGTcount: A:0.27, C:0.07, G:0.15, T:0.51
Consensus pattern (14 bp):
CATTTTAGTATAGT
Found at i:21774687 original size:11 final size:11
Alignment explanation
Indices: 21774671--21774695 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21774661 AACATGCCCA
21774671 TAAACTAAATC
1 TAAACTAAATC
21774682 TAAACTAAATC
1 TAAACTAAATC
21774693 TAA
1 TAA
21774696 TTTTGAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
TAAACTAAATC
Found at i:21785739 original size:20 final size:20
Alignment explanation
Indices: 21785701--21785741 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21785691 AGACTCATAT
* *
21785701 TAATCTCGTTGAATTTCTCA
1 TAATCTCGATGAATATCTCA
*
21785721 TAATCTCGATGGATATCTCA
1 TAATCTCGATGAATATCTCA
21785741 T
1 T
21785742 TCACCGTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (20 bp):
TAATCTCGATGAATATCTCA
Found at i:21789513 original size:31 final size:31
Alignment explanation
Indices: 21789475--21789535 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
21789465 TTTCATATTT
21789475 CATATTTCATAACACTGGGCCGAAGCCTTTC
1 CATATTTCATAACACTGGGCCGAAGCCTTTC
**
21789506 CATATTTCATATTACTGGGCCGAAGCCTTT
1 CATATTTCATAACACTGGGCCGAAGCCTTT
21789536 ACTGTAAACG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (31 bp):
CATATTTCATAACACTGGGCCGAAGCCTTTC
Found at i:21789778 original size:24 final size:24
Alignment explanation
Indices: 21789742--21789914 Score: 275
Period size: 23 Copynumber: 7.4 Consensus size: 24
21789732 CTGGAGGCCT
*
21789742 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
21789767 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21789791 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
21789814 AGCCCTTTTGATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21789837 AGCCCTTTT-ATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
21789860 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21789884 AGCCC-TTTAATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21789906 AGCCCTTTT
1 AGCCCTTTT
21789915 TCACTTCCTC
Statistics
Matches: 141, Mismatches: 3, Indels: 10
0.92 0.02 0.06
Matches are distributed among these distances:
22 18 0.13
23 67 0.48
24 52 0.37
25 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:21789988 original size:20 final size:20
Alignment explanation
Indices: 21789963--21790029 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
21789953 TTATGATTAC
21789963 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
21789983 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21790003 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21790023 ACCATGT
1 ATCATGT
21790030 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:21789994 original size:11 final size:11
Alignment explanation
Indices: 21789963--21790018 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
21789953 TTATGATTAC
21789963 ATCATGTGCAT
1 ATCATGTGCAT
*
21789974 ATCA--TACAT
1 ATCATGTGCAT
21789983 ATCATGTGCAT
1 ATCATGTGCAT
*
21789994 ATCA--TACAT
1 ATCATGTGCAT
*
21790003 GTCATGTGCAT
1 ATCATGTGCAT
21790014 ATCAT
1 ATCAT
21790019 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:21790098 original size:25 final size:25
Alignment explanation
Indices: 21790066--21790113 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
21790056 ATACATAAAC
* * *
21790066 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
21790091 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
21790114 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:21797649 original size:30 final size:30
Alignment explanation
Indices: 21797613--21797675 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
21797603 CCTTTTCATA
21797613 TTTCATATTTCATAACACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
**
21797643 TTTCATATTTCATATTACTGGGCCGAAGCC
1 TTTCATATTTCATAACACTGGGCCGAAGCC
21797673 TTT
1 TTT
21797676 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGGCCGAAGCC
Found at i:21797918 original size:24 final size:24
Alignment explanation
Indices: 21797882--21798057 Score: 293
Period size: 24 Copynumber: 7.4 Consensus size: 24
21797872 CTGGAGGCCT
*
21797882 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
21797907 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21797931 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
21797954 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
21797978 AGCCCTTTTTATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
21798002 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21798026 AGCCC-TTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
21798049 AGCCCTTTT
1 AGCCCTTTT
21798058 TCACTTCCTC
Statistics
Matches: 144, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
23 45 0.31
24 95 0.66
25 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:21797958 original size:47 final size:47
Alignment explanation
Indices: 21797889--21798057 Score: 302
Period size: 47 Copynumber: 3.6 Consensus size: 47
21797879 CCTAGCCTCT
* *
21797889 TTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
21797936 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
*
21797983 TTTTTATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
21798031 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
21798058 TCACTTCCTC
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
47 71 0.61
48 46 0.39
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:21798058 original size:71 final size:71
Alignment explanation
Indices: 21797882--21798058 Score: 293
Period size: 71 Copynumber: 2.5 Consensus size: 71
21797872 CTGGAGGCCT
* *
21797882 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATAACTG
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTG
21797947 GGGCATA
65 GGGCATA
* *
21797954 AGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTTGATAACTG
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCC-TTTAATAACTG
21798019 GGGCATA
65 GGGCATA
21798026 AGCCC-TTTAATAACTGGGGCATAAGCCCTTTTT
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTT
21798059 CACTTCCTCC
Statistics
Matches: 99, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
71 73 0.74
72 26 0.26
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (71 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTGG
GGCATA
Found at i:21798131 original size:20 final size:20
Alignment explanation
Indices: 21798106--21798172 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
21798096 TTATGATTAC
21798106 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
21798126 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21798146 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
21798166 ACCATGT
1 ATCATGT
21798173 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:21798137 original size:11 final size:11
Alignment explanation
Indices: 21798106--21798161 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
21798096 TTATGATTAC
21798106 ATCATGTGCAT
1 ATCATGTGCAT
*
21798117 ATCA--TACAT
1 ATCATGTGCAT
21798126 ATCATGTGCAT
1 ATCATGTGCAT
*
21798137 ATCA--TACAT
1 ATCATGTGCAT
*
21798146 GTCATGTGCAT
1 ATCATGTGCAT
21798157 ATCAT
1 ATCAT
21798162 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:21798241 original size:25 final size:25
Alignment explanation
Indices: 21798209--21798256 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
21798199 ATACATAAAC
* * *
21798209 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
21798234 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
21798257 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:21800126 original size:15 final size:15
Alignment explanation
Indices: 21800085--21800147 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
21800075 GAAAAACAGA
*
21800085 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* * *
21800100 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
21800115 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
21800130 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
21800145 ATA
1 ATA
21800148 CCATATCTTA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:21804492 original size:28 final size:28
Alignment explanation
Indices: 21804460--21804515 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
21804450 CATGAAACAC
*
21804460 TCATTTTCTTCCATTAGGCATCAAAATT
1 TCATTTTCTTCCATTAGACATCAAAATT
21804488 TCATTTTCTTCCATTAGACATCAAAATT
1 TCATTTTCTTCCATTAGACATCAAAATT
21804516 CATGCATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.05, T:0.43
Consensus pattern (28 bp):
TCATTTTCTTCCATTAGACATCAAAATT
Found at i:21812002 original size:51 final size:51
Alignment explanation
Indices: 21811926--21812115 Score: 294
Period size: 51 Copynumber: 3.7 Consensus size: 51
21811916 TTAAGGGTGT
* * *
21811926 CATAGTACCACCCTTGTAG-CCAAAGCTATTTTATTCACAAAGTGGACTTCA
1 CATAGTACCACACTTGT-GTCCAAAGCTATTATATTCACAAAGTGGCCTTCA
* *
21811977 CATAGTACCACACTTGTGTCCAAAGCTATTATATTCAAAAAGTGTCCTTCA
1 CATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCA
* *
21812028 CATAGTACCACACTTGTGTTCAAAGCTATTATAGTCACAAAGTGGCCTTCA
1 CATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCA
21812079 CATAGTACCACACTTGTGTCCAAAGCTATTAT-TTCAC
1 CATAGTACCACACTTGTGTCCAAAGCTATTATATTCAC
21812116 TTAGCACAAT
Statistics
Matches: 127, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
50 5 0.04
51 122 0.96
ACGTcount: A:0.32, C:0.25, G:0.13, T:0.31
Consensus pattern (51 bp):
CATAGTACCACACTTGTGTCCAAAGCTATTATATTCACAAAGTGGCCTTCA
Found at i:21812196 original size:11 final size:11
Alignment explanation
Indices: 21812180--21812211 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
21812170 TTAGCACATT
21812180 ACCATGGTCTA
1 ACCATGGTCTA
21812191 ACCATGGTCTA
1 ACCATGGTCTA
21812202 ACCATGGTCT
1 ACCATGGTCT
21812212 TTTACCGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (11 bp):
ACCATGGTCTA
Found at i:21821107 original size:36 final size:36
Alignment explanation
Indices: 21821055--21821126 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
21821045 TCAAGCTATG
*
21821055 ATTCTAGTATGATCATGTCCTTATAC-GTGGTTACCT
1 ATTCTAGTATGATCATGTCCTCAT-CGGTGGTTACCT
21821091 ATTCTAGTAT-ATTCATGTCCTCATCGGTGGTTACCT
1 ATTCTAGTATGA-TCATGTCCTCATCGGTGGTTACCT
21821127 TCTTACCATT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
35 2 0.06
36 31 0.94
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.42
Consensus pattern (36 bp):
ATTCTAGTATGATCATGTCCTCATCGGTGGTTACCT
Found at i:21823554 original size:16 final size:17
Alignment explanation
Indices: 21823533--21823564 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
21823523 ACATATATTC
21823533 TGAATA-AATTATTTAT
1 TGAATATAATTATTTAT
21823549 TGAATATAATTATTTA
1 TGAATATAATTATTTA
21823565 ATTTTAACTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
TGAATATAATTATTTAT
Found at i:21824896 original size:17 final size:17
Alignment explanation
Indices: 21824876--21824909 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
21824866 TTTTTATTTT
21824876 AATTAATAATATTATTA
1 AATTAATAATATTATTA
**
21824893 AATTGTTAATATTATTA
1 AATTAATAATATTATTA
21824910 TTTTTTAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
AATTAATAATATTATTA
Found at i:21826872 original size:30 final size:30
Alignment explanation
Indices: 21826793--21826873 Score: 108
Period size: 30 Copynumber: 2.7 Consensus size: 30
21826783 ATGGAAAAAC
* *
21826793 AAGATGAAGATGAAGATAAAGCTAGAGGTG
1 AAGATGGAGATGAAGATAATGCTAGAGGTG
* * *
21826823 AAGATGGAAATAAAGATAATGCTGGAGGTG
1 AAGATGGAGATGAAGATAATGCTAGAGGTG
*
21826853 AATATGGAGATGAAGATAATG
1 AAGATGGAGATGAAGATAATG
21826874 ATAATGATGA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.46, C:0.02, G:0.32, T:0.20
Consensus pattern (30 bp):
AAGATGGAGATGAAGATAATGCTAGAGGTG
Found at i:21830483 original size:40 final size:40
Alignment explanation
Indices: 21830429--21830546 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
21830419 CGGATGTAAC
* *
21830429 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
21830469 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
21830509 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
21830547 TTTTTTTCCA
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:21834483 original size:289 final size:290
Alignment explanation
Indices: 21833946--21834526 Score: 871
Period size: 289 Copynumber: 2.0 Consensus size: 290
21833936 GTAAAATATC
*
21833946 ATTTTGGACTGTAGTTTGGGGTTTTTGGATTTGGGTTTTATGCATGTATTATTCAAACACATTGA
1 ATTTTGGACTGTAGTTTGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
* * * *
21834011 TTATATATTTTAACCAAAAAATGCATGTTACTCGACCTAATTAAAATCTGACCTGAATAGTGTTT
66 TTATATATGTTAACCAAAAAATGCATGTTACTCGACCTAATTAAAATCTGACATGAATAGTATAT
* * * * *
21834076 TTCCACTACTTTGAAAGATAACGAAATTTTGTAAAACTAAGCGAAAGACAACGGGTTTCTAAAAA
131 TTCCACTACTTTGAAAGATAACAAAATTTTGCAAAACAAAGCGAAAAACAACGAGTTTCTAAAAA
* * *
21834141 CATCACTATCAATAATAAAAATGAGGCTTAAGAATAGATGGCTCAATAAATGAATATTTTTCAAA
196 CATCAATATCAATAATAAAAATGAGACTTAAGAATAAATGGCTCAATAAATGAATATTTTTCAAA
*
21834206 CTAACTCAAGTGCAACCGTAGTTTTCCAAA
261 CTAACTCAAGTGCAACCGCAGTTTTCCAAA
* * *
21834236 ATTTTGGATTGT-GTTAT-GGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACTCGTTG
1 ATTTTGGACTGTAGTT-TGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTG
* * *
21834299 ATTATATATGTTAATCGAAAAATGCATGTTACTTGACCTAATTAAAATCTGACATGAATAGTATA
65 ATTATATATGTTAACCAAAAAATGCATGTTACTCGACCTAATTAAAATCTGACATGAATAGTATA
* * *
21834364 TTTCCACTATTTTGAAAGATAACAAAATTTTGCAACACAAAGC-AACAAACAACGAGTTTCTATA
130 TTTCCACTACTTTGAAAGATAACAAAATTTTGCAAAACAAAGCGAA-AAACAACGAGTTTCTAAA
* *
21834428 AACATCAATATCAATAATAAAAATGAGACTTAAGAATAAATGGTTCAATAAATGAATATTTTTCG
194 AACATCAATATCAATAATAAAAATGAGACTTAAGAATAAATGGCTCAATAAATGAATATTTTTCA
* * *
21834493 AACTAACTCAAGTGTAACTGCGGTTTTCCAAA
259 AACTAACTCAAGTGCAACCGCAGTTTTCCAAA
21834525 AT
1 AT
21834527 GAGTTAAATT
Statistics
Matches: 261, Mismatches: 28, Indels: 5
0.89 0.10 0.02
Matches are distributed among these distances:
288 2 0.01
289 247 0.95
290 12 0.05
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.34
Consensus pattern (290 bp):
ATTTTGGACTGTAGTTTGGGGTTTTTGGATTTGGGTTTTATGCATGCATTATTCAAACACATTGA
TTATATATGTTAACCAAAAAATGCATGTTACTCGACCTAATTAAAATCTGACATGAATAGTATAT
TTCCACTACTTTGAAAGATAACAAAATTTTGCAAAACAAAGCGAAAAACAACGAGTTTCTAAAAA
CATCAATATCAATAATAAAAATGAGACTTAAGAATAAATGGCTCAATAAATGAATATTTTTCAAA
CTAACTCAAGTGCAACCGCAGTTTTCCAAA
Found at i:21837320 original size:40 final size:40
Alignment explanation
Indices: 21837261--21837412 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
21837251 AAATTGAATG
* * *
21837261 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
21837301 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
21837341 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
21837381 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
21837413 ACATGTTATA
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:21837395 original size:80 final size:80
Alignment explanation
Indices: 21837261--21837412 Score: 209
Period size: 80 Copynumber: 1.9 Consensus size: 80
21837251 AAATTGAATG
* *
21837261 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
21837326 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * *
21837341 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
21837404 CATTTGTGC
64 CAATTGTGC
21837413 ACATGTTATA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
79 4 0.06
80 59 0.94
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:21845338 original size:40 final size:40
Alignment explanation
Indices: 21845244--21845393 Score: 162
Period size: 40 Copynumber: 3.8 Consensus size: 40
21845234 AAATTGAATG
* * *
21845244 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAATT
* ****
21845283 ATA-CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAATT
* *
21845322 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGAAATT
* *
21845362 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
21845394 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
38 9 0.10
39 27 0.30
40 53 0.58
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAAATT
Found at i:21845380 original size:80 final size:78
Alignment explanation
Indices: 21845244--21845393 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 78
21845234 AAATTGAATG
*
21845244 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATACCGGGTTAAGACCCGAAGGCAAT
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATACCGGGCTAAGACCCGAAGGCAAT
21845309 TGTGCTAGTGGCT
66 TGTGCTAGTGGCT
* * * *
21845322 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATA-CCGGGCTAAGACCCGAAGG
*
21845385 CATTTGTGC
62 CAATTGTGC
21845394 ACATGGTTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
78 18 0.29
79 18 0.29
80 26 0.42
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATACCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGGCT
Found at i:21851549 original size:40 final size:41
Alignment explanation
Indices: 21851483--21851635 Score: 154
Period size: 40 Copynumber: 3.8 Consensus size: 41
21851473 AAATTGAATG
* *
21851483 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGAAATT
* ***
21851522 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCT-AGTGGCTAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAG-AAAT-T
* *
21851564 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGAAATT
* *
21851604 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
21851636 ATGGTTATAT
Statistics
Matches: 93, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
39 13 0.14
40 44 0.47
41 7 0.08
42 29 0.31
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGAAATT
Found at i:21851610 original size:82 final size:81
Alignment explanation
Indices: 21851485--21851635 Score: 207
Period size: 82 Copynumber: 1.9 Consensus size: 81
21851475 ATTGAATGAT
*
21851485 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
21851550 GTGCTAGTGGCTATAC
66 GTGCTAGTGGCTATAC
* * * *
21851566 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
21851629 TTTGTGC
63 ATTGTGC
21851636 ATGGTTATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
81 16 0.26
82 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (81 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTATAC
Found at i:21859534 original size:40 final size:40
Alignment explanation
Indices: 21859468--21859618 Score: 164
Period size: 40 Copynumber: 3.8 Consensus size: 40
21859458 AAATTGAATG
* *
21859468 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
21859507 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
*
21859547 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
21859587 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
21859619 ACATGTTATA
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:21859601 original size:80 final size:79
Alignment explanation
Indices: 21859468--21859618 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 79
21859458 AAATTGAATG
*
21859468 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
21859533 TTGTGCTAGTGGCT
66 TTGTGCTAGTGGCT
* * * *
21859547 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
*
21859610 CATTTGTGC
63 CAATTGTGC
21859619 ACATGTTATA
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.29
80 45 0.71
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:21864646 original size:16 final size:16
Alignment explanation
Indices: 21864601--21864656 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 16
21864591 TATTTGAATG
*
21864601 TTTATGATATGATTGA
1 TTTATGATATAATTGA
* *
21864617 TTATTTGA-ATAATTTA
1 TT-TATGATATAATTGA
21864633 TTTATGATATAATTGA
1 TTTATGATATAATTGA
*
21864649 TTCATGAT
1 TTTATGAT
21864657 TTTGAAAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
15 4 0.12
16 24 0.75
17 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (16 bp):
TTTATGATATAATTGA
Found at i:21876554 original size:33 final size:33
Alignment explanation
Indices: 21876517--21876585 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
21876507 CGCAAATCAT
*
21876517 AGTTTACTACGGTTTTCAATTTACACTACCTAG
1 AGTTTACTACGATTTTCAATTTACACTACCTAG
21876550 AGTTTACTACGATTTTCAATTTACACTACCTAG
1 AGTTTACTACGATTTTCAATTTACACTACCTAG
21876583 AGT
1 AGT
21876586 GTTTTAATAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (33 bp):
AGTTTACTACGATTTTCAATTTACACTACCTAG
Found at i:21881764 original size:27 final size:28
Alignment explanation
Indices: 21881708--21881777 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
21881698 AAATTTGTAC
21881708 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
21881736 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
21881763 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21881778 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:21881788 original size:27 final size:27
Alignment explanation
Indices: 21881708--21881789 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
21881698 AAATTTGTAC
* *
21881708 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
21881736 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
21881763 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
21881790 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:21886139 original size:48 final size:48
Alignment explanation
Indices: 21886082--21886203 Score: 165
Period size: 48 Copynumber: 2.5 Consensus size: 48
21886072 ACAACATGTG
*
21886082 AGTATTGAGATCCCATATAAGACCATATATGGGATATGGCATCGGCATC
1 AGTA-TGAGATCCCATATAAGACCATATATGGGATATGACATCGGCATC
* * *
21886131 AGTATGAGATCCCATGTAAGACCATATCTGGGATATGACATTGGCATC
1 AGTATGAGATCCCATATAAGACCATATATGGGATATGACATCGGCATC
* *
21886179 -GATATGAGGTCCCGTATAAGACCAT
1 AG-TATGAGATCCCATATAAGACCAT
21886204 GTTTGGGGCA
Statistics
Matches: 65, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
47 1 0.02
48 60 0.92
49 4 0.06
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (48 bp):
AGTATGAGATCCCATATAAGACCATATATGGGATATGACATCGGCATC
Found at i:21886288 original size:42 final size:41
Alignment explanation
Indices: 21886241--21886463 Score: 191
Period size: 42 Copynumber: 5.3 Consensus size: 41
21886231 TGAGACTTCA
* * *
21886241 TGTAAGACCATGTCTGGGACATGG-ATTTGATATGATATTTTG
1 TGTAAGACCATG-CTGGGACATGGCA-TCGATATGAGATTATG
* * * *
21886283 TGTAAGACCATATCTGGGATATGGCATCAATACGAGATTATG
1 TGTAAGACCAT-GCTGGGACATGGCATCGATATGAGATTATG
* *
21886325 TGTAAGACCATAGCTGGG-CTATTGGCATCGATATGATATTACG
1 TGTAAGACCAT-GCTGGGAC-A-TGGCATCGATATGAGATTATG
* * *
21886368 TGTAAGACCATGACTGGGACATGGCATCGTTATGAGATTTTA
1 TGTAAGACCATG-CTGGGACATGGCATCGATATGAGATTATG
* * **
21886410 TGTAAGACCATAGCTGGG-CTATTGGCTTTGATATGAGATTACA
1 TGTAAGACCAT-GCTGGGAC-A-TGGCATCGATATGAGATTATG
21886453 TGTAAGACCAT
1 TGTAAGACCAT
21886464 ATCCAGGATA
Statistics
Matches: 149, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 84 0.56
43 63 0.42
44 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (41 bp):
TGTAAGACCATGCTGGGACATGGCATCGATATGAGATTATG
Found at i:21886371 original size:43 final size:42
Alignment explanation
Indices: 21886269--21886464 Score: 207
Period size: 42 Copynumber: 4.6 Consensus size: 42
21886259 ACATGGATTT
* * * *
21886269 GATATGATATTTTGTGTAAGACCATATCTGGGATATGGCATC
1 GATATGAGATTATGTGTAAGACCATAGCTGGGCTATGGCATC
* *
21886311 AATACGAGATTATGTGTAAGACCATAGCTGGGCTATTGGCATC
1 GATATGAGATTATGTGTAAGACCATAGCTGGGCTA-TGGCATC
* *
21886354 GATATGATATTACGTGTAAGACCAT-GACTGGGAC-ATGGCATC
1 GATATGAGATTATGTGTAAGACCATAG-CTGGG-CTATGGCATC
* * * * *
21886396 GTTATGAGATTTTATGTAAGACCATAGCTGGGCTATTGGCTTT
1 GATATGAGATTATGTGTAAGACCATAGCTGGGCTA-TGGCATC
**
21886439 GATATGAGATTACATGTAAGACCATA
1 GATATGAGATTATGTGTAAGACCATA
21886465 TCCAGGATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 63 0.49
43 63 0.49
44 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
GATATGAGATTATGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:21886371 original size:85 final size:85
Alignment explanation
Indices: 21886269--21886479 Score: 280
Period size: 85 Copynumber: 2.5 Consensus size: 85
21886259 ACATGGATTT
** *
21886269 GATATGATATTTTGTGTAAGACCATATCTGGGATATGGCATCAATACGAGATTATGTGTAAGACC
1 GATATGATATTACGTGTAAGACCATATCTGGGATATGGCATCAATACGAGATTATATGTAAGACC
21886334 ATAGCTGGGCTATTGGCATC
66 ATAGCTGGGCTATTGGCATC
* ** * *
21886354 GATATGATATTACGTGTAAGACCATGA-CTGGGACATGGCATCGTTATGAGATTTTATGTAAGAC
1 GATATGATATTACGTGTAAGACCAT-ATCTGGGATATGGCATCAATACGAGATTATATGTAAGAC
* *
21886418 CATAGCTGGGCTATTGGCTTT
65 CATAGCTGGGCTATTGGCATC
* * **
21886439 GATATGAGATTACATGTAAGACCATATCCAGGATATGGCAT
1 GATATGATATTACGTGTAAGACCATATCTGGGATATGGCAT
21886480 TGTACGACAT
Statistics
Matches: 109, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
84 1 0.01
85 107 0.98
86 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (85 bp):
GATATGATATTACGTGTAAGACCATATCTGGGATATGGCATCAATACGAGATTATATGTAAGACC
ATAGCTGGGCTATTGGCATC
Found at i:21888678 original size:19 final size:20
Alignment explanation
Indices: 21888641--21888681 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
21888631 TACAACACAA
*
21888641 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
21888661 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
21888680 TT
1 TT
21888682 GCCTAAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:21891164 original size:39 final size:41
Alignment explanation
Indices: 21891115--21891194 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
21891105 TTATCCTAGA
* *
21891115 AAAAAAGAA-TTT-AAAAAGAAGATAATCTTGGGTTGTTGT
1 AAAAAAGAATTTTAAAAAAGAAGATAAACATGGGTTGTTGT
*
21891154 AAAAATGAATTTTAAAAAAAGAAGATAAACATGGGTTGTTG
1 AAAAAAGAATTTT-AAAAAAGAAGATAAACATGGGTTGTTG
21891195 GATTTACCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
39 8 0.23
40 3 0.09
42 24 0.69
ACGTcount: A:0.49, C:0.03, G:0.20, T:0.29
Consensus pattern (41 bp):
AAAAAAGAATTTTAAAAAAGAAGATAAACATGGGTTGTTGT
Found at i:21895200 original size:22 final size:22
Alignment explanation
Indices: 21895175--21895219 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
21895165 CAAAATTTAA
21895175 TTGCATATAATTTATTAAGGGT
1 TTGCATATAATTTATTAAGGGT
21895197 TTGCATATAATTTATTAAGGGT
1 TTGCATATAATTTATTAAGGGT
21895219 T
1 T
21895220 ACTCATATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.18, T:0.47
Consensus pattern (22 bp):
TTGCATATAATTTATTAAGGGT
Found at i:21896277 original size:31 final size:31
Alignment explanation
Indices: 21896242--21896304 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
21896232 ATTATGCTTA
21896242 AGCCCCCTAAGGGCATTCTAAATAATTGTTG
1 AGCCCCCTAAGGGCATTCTAAATAATTGTTG
21896273 AGCCCCCTAAGGGCATTCTAAATAATTGTTG
1 AGCCCCCTAAGGGCATTCTAAATAATTGTTG
21896304 A
1 A
21896305 TCTCTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (31 bp):
AGCCCCCTAAGGGCATTCTAAATAATTGTTG
Found at i:21899980 original size:40 final size:40
Alignment explanation
Indices: 21899886--21900030 Score: 202
Period size: 40 Copynumber: 3.6 Consensus size: 40
21899876 TACTCGAATG
*
21899886 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
21899927 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
21899967 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
21900007 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
21900031 CTTGTGCGAG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 63 0.68
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:21912752 original size:6 final size:6
Alignment explanation
Indices: 21912741--21912791 Score: 59
Period size: 6 Copynumber: 8.2 Consensus size: 6
21912731 CAAATTTTTT
*
21912741 AAATAA AAATAA AAATAA AAAT-A AAGTGAA AAATAA AAGATAAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAAT-AA AAATAA AA-AT-AA AAATAA
21912791 A
1 A
21912792 TGGACTCAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
5 4 0.10
6 23 0.59
7 8 0.21
8 4 0.10
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:21920914 original size:59 final size:60
Alignment explanation
Indices: 21920818--21920950 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
21920808 GACAAGATTG
* * *
21920818 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
21920878 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
21920937 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
21920951 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:21920963 original size:29 final size:29
Alignment explanation
Indices: 21920848--21920950 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
21920838 AAAATTGTAC
*
21920848 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
21920877 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
21920907 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
21920936 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
21920951 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:21922482 original size:143 final size:143
Alignment explanation
Indices: 21922224--21922505 Score: 546
Period size: 143 Copynumber: 2.0 Consensus size: 143
21922214 TATGATTTTT
21922224 AATGTAACAGTGACGCAGTTAGCCAGCCTGCCCGGAACAGAAATTAATTATTTCCAAGAGAGAAA
1 AATGTAACAGTGACGCAGTTAGCCAGCCTGCCCGGAACAGAAATTAATTATTTCCAAGAGAGAAA
21922289 TAAGGGAAGTAAGCCCGGTAACACCTTGTGGTCAAATCCAGTGACGGTCACGGGTTTGGGGTGTT
66 TAAGGGAAGTAAGCCCGGTAACACCTTGTGGTCAAATCCAGTGACGGTCACGGGTTTGGGGTGTT
21922354 ACATTTAATATTA
131 ACATTTAATATTA
*
21922367 AATGTAACAGTGACGCAGTTCGCCAGCCTGCCCGGAACAGAAATTAATTATTTCCAAGAGAGAAA
1 AATGTAACAGTGACGCAGTTAGCCAGCCTGCCCGGAACAGAAATTAATTATTTCCAAGAGAGAAA
*
21922432 TAAGGGAAGTAAGCCCGGTAACACCTTGTGGTCAAATCCGGTGACGGTCACGGGTTTGGGGTGTT
66 TAAGGGAAGTAAGCCCGGTAACACCTTGTGGTCAAATCCAGTGACGGTCACGGGTTTGGGGTGTT
21922497 ACATTTAAT
131 ACATTTAAT
21922506 TGGTATCAGA
Statistics
Matches: 137, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
143 137 1.00
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (143 bp):
AATGTAACAGTGACGCAGTTAGCCAGCCTGCCCGGAACAGAAATTAATTATTTCCAAGAGAGAAA
TAAGGGAAGTAAGCCCGGTAACACCTTGTGGTCAAATCCAGTGACGGTCACGGGTTTGGGGTGTT
ACATTTAATATTA
Found at i:21927964 original size:59 final size:60
Alignment explanation
Indices: 21927868--21928000 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
21927858 GACAAGATTG
* * *
21927868 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
21927928 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
21927987 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
21928001 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:21928013 original size:29 final size:29
Alignment explanation
Indices: 21927898--21928000 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
21927888 AAAATTGTAC
*
21927898 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
21927927 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
21927957 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
21927986 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
21928001 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:21929786 original size:26 final size:26
Alignment explanation
Indices: 21929751--21929912 Score: 261
Period size: 26 Copynumber: 6.2 Consensus size: 26
21929741 TGATACAAAT
*
21929751 TGATAATAGGTTAGGTAAATGTTCCT
1 TGATAATAGGTTAGGTAAATGTTCCA
21929777 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
21929803 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
21929829 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
21929855 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
21929881 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
21929907 TGATAA
1 TGATAA
21929913 GAATTTCATG
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 129 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:21929841 original size:78 final size:78
Alignment explanation
Indices: 21929751--21929912 Score: 297
Period size: 78 Copynumber: 2.1 Consensus size: 78
21929741 TGATACAAAT
*
21929751 TGATAATAGGTTAGGTAAATGTTCCTTGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
21929816 GGTAAATGTTTCA
66 GGTAAATGTTTCA
* *
21929829 TGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCATGATAATGGGTTA
1 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
21929894 GGTAAATGTTTCA
66 GGTAAATGTTTCA
21929907 TGATAA
1 TGATAA
21929913 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
78 81 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.37
Consensus pattern (78 bp):
TGATAATAGGTTAGGTAAATGTTCCATGATAATAGGTTAGGTAAATGTTCCATGATAATGGGTTA
GGTAAATGTTTCA
Found at i:21931387 original size:28 final size:26
Alignment explanation
Indices: 21931356--21931416 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
21931346 GAAAGTAGCT
21931356 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATAATACCCCTA-G-ATGGA
* * * *
21931384 AAATTACTGTTATATCCCTAGGTGGA
1 AAATTACTATAATACCCCTAGATGGA
21931410 AAATTAC
1 AAATTAC
21931417 CGTTATACCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.38
27 1 0.03
28 17 0.59
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (26 bp):
AAATTACTATAATACCCCTAGATGGA
Found at i:21931416 original size:26 final size:26
Alignment explanation
Indices: 21931380--21931431 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21931370 CCCCTATGTA
*
21931380 TGGAAAATTACTGTTATATCCC-TAGG
1 TGGAAAATTACCGTTATA-CCCGTAGG
21931406 TGGAAAATTACCGTTATACCCGTAGG
1 TGGAAAATTACCGTTATACCCGTAGG
21931432 GTTAATTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (26 bp):
TGGAAAATTACCGTTATACCCGTAGG
Found at i:21931584 original size:26 final size:26
Alignment explanation
Indices: 21931534--21931645 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
21931524 GAGGAAGCAT
* *
21931534 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-ATTATCTGA
*
21931561 TCTGGTGGCTCTG-CACATATATCTGT
1 TCTGGTGGCTCTGCCACAT-TATCTGA
* *
21931587 TCTCGTGGCTCTACCACGATTATCTGTA
1 TCTGGTGGCTCTGCCAC-ATTATCTG-A
* * *
21931615 TCTGGTGACTCTGTCACATTATCTGT
1 TCTGGTGGCTCTGCCACATTATCTGA
21931641 TCTGG
1 TCTGG
21931646 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.01
26 25 0.36
27 29 0.41
28 15 0.21
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACATTATCTGA
Found at i:21934078 original size:40 final size:40
Alignment explanation
Indices: 21934033--21934217 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 40
21934023 TACACATTCA
* *
21934033 AATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACG
1 AATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACG
* * *
21934073 AATGCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCG
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
* *
21934113 AAAGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACG
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACG
* * * * *
21934153 TATGCCGTC-GGATCTTAGTCCGGATTTAGTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACG
*
21934193 AAAGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAT
21934218 ATCAGTCGAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 109 0.89
41 10 0.08
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACG
Found at i:21942133 original size:40 final size:40
Alignment explanation
Indices: 21942049--21942229 Score: 165
Period size: 40 Copynumber: 4.5 Consensus size: 40
21942039 ACATTCAAAT
* * *
21942049 GCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAAA
* * * *
21942089 GCCTTCGGGACTTAACCCGGATTTAGTAGCTTGCTCGAAA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAAA
* * *
21942129 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGTAT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGAAA
* * * *
21942169 GCCGTC-GGATCTTAGTCCGGA-TTAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACGAAA
21942208 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
21942230 ATCATTCGAA
Statistics
Matches: 115, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 26 0.23
40 87 0.76
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAAA
Found at i:21942228 original size:79 final size:80
Alignment explanation
Indices: 21942044--21942229 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
21942034 GCTACACATT
* *
21942044 CAAATGCCTTCGGGACATAGCCCGG-TTACAGTAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGATTACAGTAACTCGCACGAATGCCGTCGGGACTTAACCCG
*
21942108 GATTTAGTAGCTTGCT
65 GATTTAGTAGCTTGCA
* * * **
21942124 CGAAAGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCACGTATGCCGTC-GGATCTTAGTC
1 C-AAAGCCTTCGGGA-CTTAGCCCGGATTACAGTAACTCGCACGAATGCCGTCGGGA-CTTAACC
21942186 CGGA-TTAGTCA-CTTAGCA
63 CGGATTTAGT-AGCTT-GCA
21942204 CAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAAGCCTTCGGGACTTAGCCCGGAT
21942230 ATCATTCGAA
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
79 34 0.38
80 51 0.57
81 5 0.06
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGATTACAGTAACTCGCACGAATGCCGTCGGGACTTAACCCGG
ATTTAGTAGCTTGCA
Found at i:21950139 original size:40 final size:40
Alignment explanation
Indices: 21950055--21950236 Score: 158
Period size: 40 Copynumber: 4.5 Consensus size: 40
21950045 ACATTCAAAT
* * * *
21950055 GCCTTCGGGACATAGCCCGG-TTACAGTAACTTGCACGAAT
1 GCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACGAAA
* * *
21950095 GCCTTCGGGACTTAACCCGGATTTAGTAGCTCGCTCGAAA
1 GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAAA
* *
21950135 GCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCAC-ATAT
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACGA-AA
* * * * *
21950175 GCCGTC-GGATATTAGTCCGGATTTAGTCACTTAGCAC-AAA
1 GCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACGAAA
21950215 GCCTTCGGGACTTAGCCCGGAT
1 GCCTTCGGGACTTAGCCCGGAT
21950237 GTCATTCGAA
Statistics
Matches: 117, Mismatches: 20, Indels: 10
0.80 0.14 0.07
Matches are distributed among these distances:
39 4 0.03
40 102 0.87
41 11 0.09
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACGAAA
Found at i:21955413 original size:43 final size:42
Alignment explanation
Indices: 21955248--21955416 Score: 141
Period size: 43 Copynumber: 4.0 Consensus size: 42
21955238 ATATCGTATA
* * *
21955248 ATGCCAACGTCCCAGACGTGG--TTACATGTAATCACATGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACATG-AAACACATATCG
* * *
21955289 ATGCC-ACTGTCCCAGACAAGGTCTTACACGAACCACA-ATTACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACATGAAACACATA-T-CG
* * *
21955332 ATGCCGATGTCCCAGACATGGTCTTAC-TCAAAATCACATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACAT-GAAA-CACATATCG
* *
21955375 ATGCCAACGTTCCAGACGTGGTCTTACATGAGAACACATATC
1 ATGCCAACGTCCCAGACATGGTCTTACATGA-AACACATATC
21955417 AGAAATCCTA
Statistics
Matches: 102, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
40 2 0.02
41 16 0.16
42 7 0.07
43 67 0.66
44 9 0.09
45 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAAACACATATCG
Found at i:21963457 original size:29 final size:28
Alignment explanation
Indices: 21963420--21963480 Score: 97
Period size: 29 Copynumber: 2.2 Consensus size: 28
21963410 GGTGAGTTTC
21963420 AGGT-ACTGAAATGGTATCTATCACAAAA
1 AGGTAACTGAAATGGTATCTATCA-AAAA
*
21963448 AGGTAACTGAAATGGTATCTATCAGAAA
1 AGGTAACTGAAATGGTATCTATCAAAAA
21963476 AGGTA
1 AGGTA
21963481 TCTCTTACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 19 0.61
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (28 bp):
AGGTAACTGAAATGGTATCTATCAAAAA
Found at i:21969773 original size:39 final size:40
Alignment explanation
Indices: 21969730--21969814 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
21969720 AACGACTTAC
**
21969730 CGGCTAAAA-TGGCACTTATTGTGCGATTCGAAATAGCTT
1 CGGCTAAAAGTGGCACTTATTGTGAAATTCGAAATAGCTT
* * *
21969769 CGGCTAAAAGTGGCACTTGTTGTGAAATTTGAGATAGCTT
1 CGGCTAAAAGTGGCACTTATTGTGAAATTCGAAATAGCTT
21969809 CGGCTA
1 CGGCTA
21969815 TATATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
39 9 0.22
40 31 0.77
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (40 bp):
CGGCTAAAAGTGGCACTTATTGTGAAATTCGAAATAGCTT
Found at i:21972478 original size:43 final size:43
Alignment explanation
Indices: 21972411--21972622 Score: 148
Period size: 43 Copynumber: 5.0 Consensus size: 43
21972401 ATGCCATTAT
* * *
21972411 AGAACATGACTTTTAGCGGCGCTTT-TCCCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCGACGCTTTCT-CCACAAACGCCGCTAA
* *
21972454 AGAACATGACCTTTAGCGATGCTTTCTCCACAAAGGCCGCTAA
1 AGAACATGACCTTTAGCGACGCTTTCTCCACAAACGCCGCTAA
* * * * * * * *
21972497 AGAACCTAACTTTTAGCGGCGCTTT-TCAAAAAAAGTCGCTAA
1 AGAACATGACCTTTAGCGACGCTTTCTCCACAAACGCCGCTAA
* * * * * *
21972539 ATAACCTGACTTTTAGCG-CGCTAT-TCCAAAAACACCGCTAA
1 AGAACATGACCTTTAGCGACGCTTTCTCCACAAACGCCGCTAA
* * * * *
21972580 AGAATC-TAACTTTTAGCAACGCTTTC-CCAAAAACGCCACTAA
1 AGAA-CATGACCTTTAGCGACGCTTTCTCCACAAACGCCGCTAA
21972622 A
1 A
21972623 AGTCATATTC
Statistics
Matches: 138, Mismatches: 27, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
41 31 0.22
42 50 0.36
43 56 0.41
44 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGACGCTTTCTCCACAAACGCCGCTAA
Found at i:21972610 original size:42 final size:42
Alignment explanation
Indices: 21972419--21972622 Score: 187
Period size: 42 Copynumber: 4.8 Consensus size: 42
21972409 ATAGAACATG
* * * *
21972419 ACTTTTAGCGGCGCTTTTCCCACAAACGCTGCTAAAGAACATG
1 ACTTTTAGCGGCGC-TTTCCCAAAAACGCCGCTAAAGAACCTA
* ** * *
21972462 ACCTTTAGCGATGCTTTCTCCACAAAGGCCGCTAAAGAACCTA
1 ACTTTTAGCGGCGCTTTC-CCAAAAACGCCGCTAAAGAACCTA
* * * * * *
21972505 ACTTTTAGCGGCGCTTTTCAAAAAAAGTCGCTAAATAACCTG
1 ACTTTTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGAACCTA
* *
21972547 ACTTTTAGC-GCGCTATT-CCAAAAACACCGCTAAAGAATCTA
1 ACTTTTAGCGGCGCT-TTCCCAAAAACGCCGCTAAAGAACCTA
** *
21972588 ACTTTTAGCAACGCTTTCCCAAAAACGCCACTAAA
1 ACTTTTAGCGGCGCTTTCCCAAAAACGCCGCTAAA
21972623 AGTCATATTC
Statistics
Matches: 130, Mismatches: 27, Indels: 9
0.78 0.16 0.05
Matches are distributed among these distances:
41 33 0.25
42 52 0.40
43 45 0.35
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (42 bp):
ACTTTTAGCGGCGCTTTCCCAAAAACGCCGCTAAAGAACCTA
Found at i:21972637 original size:42 final size:43
Alignment explanation
Indices: 21972591--21972672 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
21972581 GAATCTAACT
21972591 TTTAGCAACGC-TTTCCCAAAAACGCCACTAAAAGTCATATTC
1 TTTAGCAACGCTTTTCCCAAAAACGCCACTAAAAGTCATATTC
**** * *
21972633 TTTAGCGGTTCTTTTCCCAAAAACGCCATTAAAGGTCATA
1 TTTAGCAACGCTTTTCCCAAAAACGCCACTAAAAGTCATA
21972673 AAAAATTAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 7 0.21
43 26 0.79
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (43 bp):
TTTAGCAACGCTTTTCCCAAAAACGCCACTAAAAGTCATATTC
Found at i:21973283 original size:40 final size:40
Alignment explanation
Indices: 21973224--21973329 Score: 160
Period size: 40 Copynumber: 2.7 Consensus size: 40
21973214 AATGTTTTTA
* * *
21973224 CGGCATTTTT-CAAAAGCGCCACTAATACTTGACCTATAG
1 CGGCGTTTTTACAAAAGCGCCACTAAAACTCGACCTATAG
21973263 CGGCGTTTTTACAAAAGCGCCACTAAAACTCGACCTATAG
1 CGGCGTTTTTACAAAAGCGCCACTAAAACTCGACCTATAG
* *
21973303 CGGCGTTTTTACAAAAGAGCCGCTAAA
1 CGGCGTTTTTACAAAAGCGCCACTAAA
21973330 GCCACTAAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
39 9 0.15
40 52 0.85
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (40 bp):
CGGCGTTTTTACAAAAGCGCCACTAAAACTCGACCTATAG
Found at i:21975078 original size:17 final size:17
Alignment explanation
Indices: 21975056--21975101 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
21975046 ATAATTAAAC
*
21975056 ATTAAAAAATTATAATT
1 ATTAAAAAATTATAATA
21975073 ATTAAAAAAATTATAATA
1 ATT-AAAAAATTATAATA
*
21975091 ATTACAAAATT
1 ATTAAAAAATT
21975102 TTTAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
ATTAAAAAATTATAATA
Found at i:21975082 original size:18 final size:19
Alignment explanation
Indices: 21975059--21975099 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
21975049 ATTAAACATT
*
21975059 AAAAAATTATAATTATTA-
1 AAAAAATTATAATAATTAC
21975077 AAAAAATTATAATAATTAC
1 AAAAAATTATAATAATTAC
21975096 AAAA
1 AAAA
21975100 TTTTTAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAAAATTATAATAATTAC
Found at i:21976907 original size:51 final size:51
Alignment explanation
Indices: 21976831--21976932 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
21976821 ATGATAAGTA
21976831 AGTTAAATTTTAAAGGCTTTCCATTGCCATTAAAATGGTGGCTGCCATAGT
1 AGTTAAATTTTAAAGGCTTTCCATTGCCATTAAAATGGTGGCTGCCATAGT
21976882 AGTTAAATTTTAAAGGCTTTCCATTGCCATTAAAATGGTGGCTGCCATAGT
1 AGTTAAATTTTAAAGGCTTTCCATTGCCATTAAAATGGTGGCTGCCATAGT
21976933 TTACTATTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (51 bp):
AGTTAAATTTTAAAGGCTTTCCATTGCCATTAAAATGGTGGCTGCCATAGT
Found at i:21981227 original size:2 final size:2
Alignment explanation
Indices: 21981220--21981257 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
21981210 AAAAGATGAA
21981220 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
21981258 TTACTCAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21993812 original size:38 final size:38
Alignment explanation
Indices: 21993761--21993838 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
21993751 CGAGCCCAAG
21993761 TATAGTCCTATTCAGAAAAGGCCACTTTTGAGGGCTCT
1 TATAGTCCTATTCAGAAAAGGCCACTTTTGAGGGCTCT
21993799 TATAGTCCTATTCAGAAAAGGCCACTTTTGAGGGCTCT
1 TATAGTCCTATTCAGAAAAGGCCACTTTTGAGGGCTCT
21993837 TA
1 TA
21993839 GGCATTCTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (38 bp):
TATAGTCCTATTCAGAAAAGGCCACTTTTGAGGGCTCT
Found at i:21994825 original size:27 final size:26
Alignment explanation
Indices: 21994794--21994875 Score: 128
Period size: 27 Copynumber: 3.1 Consensus size: 26
21994784 TGGCTGCCAA
* *
21994794 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
21994820 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
21994847 AACAGATATTTGTGGCAGAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
21994874 AA
1 AA
21994876 TACTTCCTCC
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:21996716 original size:18 final size:18
Alignment explanation
Indices: 21996682--21996723 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
21996672 ACAATTCGCT
*
21996682 AAAATTCTCAGAAATCCTG
1 AAAA-TCTCAGAAATCCCG
21996701 AAAATCTC-GAAGATCCCG
1 AAAATCTCAGAA-ATCCCG
21996719 AAAAT
1 AAAAT
21996724 TGGGGCGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 3 0.14
18 14 0.67
19 4 0.19
ACGTcount: A:0.45, C:0.21, G:0.12, T:0.21
Consensus pattern (18 bp):
AAAATCTCAGAAATCCCG
Found at i:21999716 original size:40 final size:40
Alignment explanation
Indices: 21999657--21999864 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 40
21999647 CAATTGAATG
* * * *
21999657 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * *
21999697 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
21999737 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
21999777 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
21999817 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
21999857 ATATCCGG
1 ATATCCGG
21999865 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.01
40 138 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:21999795 original size:80 final size:80
Alignment explanation
Indices: 21999658--21999864 Score: 240
Period size: 80 Copynumber: 2.6 Consensus size: 80
21999648 AATTGAATGA
* * ** * * *
21999658 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CA
*
21999723 -TTGTGCTAGT-G-AC
65 TTTGTGCAAGTCGTAC
* * *
21999736 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
*
21999801 ATTTGTGCAAGTCGTTC
64 ATTTGTGCAAGTCGTAC
* *
21999818 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
21999865 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 2 0.02
80 103 0.94
81 1 0.01
82 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTCGTAC
Found at i:22001575 original size:28 final size:28
Alignment explanation
Indices: 22001543--22001619 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
22001533 ATCTTTGATG
*
22001543 TCTCGTACACTAAGTGCCATACTCAATA
1 TCTCGCACACTAAGTGCCATACTCAATA
* *
22001571 TCTCGCACA-TCAAGTGCCATTCTTAATA
1 TCTCGCACACT-AAGTGCCATACTCAATA
* *
22001599 TTTTGCACACTAAGTGCCATA
1 TCTCGCACACTAAGTGCCATA
22001620 TACATATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.02
28 39 0.95
29 1 0.02
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (28 bp):
TCTCGCACACTAAGTGCCATACTCAATA
Found at i:22001692 original size:40 final size:40
Alignment explanation
Indices: 22001628--22001703 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
22001618 TATACATATA
*
22001628 TAGTCGAAGCTATCTCCAATCGCACACCAAGTGCCACATT
1 TAGTCGAAGCTATCTCCAACCGCACACCAAGTGCCACATT
* * * *
22001668 TAGTCGAAGTTATTTCGAACCGCACACTAAGTGCCA
1 TAGTCGAAGCTATCTCCAACCGCACACCAAGTGCCA
22001704 TTTTTTTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (40 bp):
TAGTCGAAGCTATCTCCAACCGCACACCAAGTGCCACATT
Found at i:22004807 original size:42 final size:41
Alignment explanation
Indices: 22004744--22005036 Score: 205
Period size: 42 Copynumber: 6.7 Consensus size: 41
22004734 TCGTTTACTT
*
22004744 GATGCCATAGT-CCA-ACTATGGTCTTACACAAAGTCTCACATC
1 GATGCCAT-GTCCCAGAC-ATGGTCTTACACAAA-TCTCATATC
* * * *
22004786 GATGCCATGTCTCAGACATGGTCTTATATGAAATCACATATC
1 GATGCCATGTCCCAGACATGGTCTTACA-CAAATCTCATATC
*** *
22004828 GATGCCGCATCCCAGACACGGTCTTACACGAAATCTCATA-C
1 GATGCCATGTCCCAGACATGGTCTTACAC-AAATCTCATATC
* * * * *
22004869 TGAAGCCATATCCCAGATATGGTCTTACACGTAATCTTATATC
1 -GATGCCATGTCCCAGACATGGTCTTACAC-AAATCTCATATC
*
22004912 GATGCCGATGTCATATCCTAGATATGGTCTTACACAAGATCTCATATCGATGC
1 GATGCC-ATGTC----CC-AGACATGGTCTTACACAA-ATCTC--AT--AT-C
* * * *
22004965 TGATGCCATATCCCAGATATGGTCTTACACAGGATCTCATATG
1 -GATGCCATGTCCCAGACATGGTCTTACACA-AATCTCATATC
22005008 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
22005037 GTATCACAAT
Statistics
Matches: 202, Mismatches: 29, Indels: 40
0.75 0.11 0.15
Matches are distributed among these distances:
41 3 0.01
42 123 0.61
43 10 0.05
44 2 0.01
46 2 0.01
47 3 0.01
48 42 0.21
49 2 0.01
50 2 0.01
52 2 0.01
53 5 0.02
54 6 0.03
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (41 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAATCTCATATC
Found at i:22004928 original size:48 final size:48
Alignment explanation
Indices: 22004873--22005013 Score: 203
Period size: 48 Copynumber: 2.9 Consensus size: 48
22004863 TCATACTGAA
* *
22004873 GCCATATCCCAGATATGGTCTTACACGTA-ATCTTATATCGATGCCGAT
1 GCCATATCCCAGATATGGTCTTACAC-AAGATCTCATATCGATGCCGAT
* * *
22004921 GTCATATCCTAGATATGGTCTTACACAAGATCTCATATCGATGCTGAT
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGAT
* *
22004969 GCCATATCCCAGATATGGTCTTACACAGGATCTCATATGGATGCC
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCC
22005014 ATGTCCCAGA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 81 0.99
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGAT
Found at i:22005091 original size:37 final size:37
Alignment explanation
Indices: 22005008--22005144 Score: 167
Period size: 37 Copynumber: 3.8 Consensus size: 37
22004998 ATCTCATATG
*
22005008 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGT-ATCAC
1 GATGCCATAG-CCCAG-CTATGGTCTTACATGTCATCAC
* *
22005044 AATGCCATAGCCCAGCTATAGTCTTACATGTCATCAC
1 GATGCCATAGCCCAGCTATGGTCTTACATGTCATCAC
* *
22005081 GATGCTATAGCCCAGCTATGGTCTTACATG-CTATTAC
1 GATGCCATAGCCCAGCTATGGTCTTACATGTC-ATCAC
22005118 GATGCCATAGCCCAG-TATGGTCTTACA
1 GATGCCATAGCCCAGCTATGGTCTTACA
22005145 CGTACCACAT
Statistics
Matches: 89, Mismatches: 8, Indels: 8
0.85 0.08 0.08
Matches are distributed among these distances:
35 1 0.01
36 37 0.42
37 51 0.57
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (37 bp):
GATGCCATAGCCCAGCTATGGTCTTACATGTCATCAC
Found at i:22007159 original size:21 final size:20
Alignment explanation
Indices: 22007135--22007173 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22007125 AAATATAACC
* *
22007135 CTAATTATTGTTTTAAATTTT
1 CTAATGATT-TTTCAAATTTT
22007156 CTAATGATTTTTCAAATT
1 CTAATGATTTTTCAAATT
22007174 CAGAACAGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (20 bp):
CTAATGATTTTTCAAATTTT
Found at i:22007657 original size:28 final size:28
Alignment explanation
Indices: 22007625--22007701 Score: 73
Period size: 28 Copynumber: 2.8 Consensus size: 28
22007615 ATCTTTGATG
* *
22007625 TCTCGTACACCGAGTGCCATACTCAATA
1 TCTCGCACACCAAGTGCCATACTCAATA
* * *
22007653 TCTCGCACATCAAGTGCCATTCTTAATA
1 TCTCGCACACCAAGTGCCATACTCAATA
* * * *
22007681 TTTTGCACACTAAGTTCCATA
1 TCTCGCACACCAAGTGCCATA
22007702 TACATATATA
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.31
Consensus pattern (28 bp):
TCTCGCACACCAAGTGCCATACTCAATA
Found at i:22025867 original size:38 final size:38
Alignment explanation
Indices: 22025806--22025905 Score: 130
Period size: 38 Copynumber: 2.6 Consensus size: 38
22025796 ATTTGATGTG
*
22025806 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTAGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTAGTAAAA
* **
22025846 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAAAA
*
22025884 TATCC-GGATAAATCCCGCAGGC
1 TATCCGGGTTAAATCCCGCAGGC
22025906 CTAGTGCTGG
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
37 16 0.29
38 26 0.47
39 5 0.09
40 8 0.15
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAAAA
Found at i:22025905 original size:37 final size:38
Alignment explanation
Indices: 22025822--22025928 Score: 135
Period size: 37 Copynumber: 2.8 Consensus size: 38
22025812 GGCTTAAAGA
* ** *
22025822 CCCGCAGGCTTCGTGCTAGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
22025860 CCCGCAGGCTTCGTGCTGGTATTATATCC-GGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * * *
22025897 CCCGCAGGCCTAGTGCTGGTATTGTATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
22025929 CCTTCATGCC
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 32 0.53
38 28 0.47
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:22025967 original size:43 final size:43
Alignment explanation
Indices: 22025919--22026032 Score: 192
Period size: 43 Copynumber: 2.7 Consensus size: 43
22025909 GTGCTGGTAT
* * **
22025919 TGTATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAATGATG
22025962 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAATGATG
1 TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAATGATG
22026005 TGTATTCGGGCCTTCGTGCCTAGCAGGC
1 TGTATTCGGGCCTTCGTGCCTAGCAGGC
22026033 GTAATGCCGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.13, C:0.26, G:0.31, T:0.30
Consensus pattern (43 bp):
TGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCAATGATG
Found at i:22028468 original size:47 final size:47
Alignment explanation
Indices: 22028396--22028537 Score: 250
Period size: 47 Copynumber: 3.0 Consensus size: 47
22028386 GTTGAATTTA
22028396 AAGCTTGTTAAA-TTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
22028442 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
* * *
22028489 AAGCTTGTTAAATTTGCCCTTATTATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
22028536 AA
1 AA
22028538 AGAAAATTTT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 12 0.13
47 80 0.87
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCTCTTAATATTTCTGGATAAGTTACTTAGTT
Found at i:22029429 original size:43 final size:44
Alignment explanation
Indices: 22029340--22029513 Score: 194
Period size: 43 Copynumber: 4.0 Consensus size: 44
22029330 ATATCACACA
** * *
22029340 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAG
1 ATACTATTCGGG-CTTCAAGCCTAGCAGGCAATAATGCCGGTGAG
*
22029385 ATACTATTCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAG
1 ATACTATTCGGGCTTCAAGCCTAGCAGGCAATAATGCCGGTGAG
* * * * *
22029428 ATACTATTTGGGCTTTCGAGCCTAGTAGGCAATAATACCGGTGAA
1 ATACTATTCGGGC-TTCAAGCCTAGCAGGCAATAATGCCGGTGAG
*
22029473 ATGA-TA-TCGGGCTTCAAGCCTAGCAGACAA-AATGCCGGTGA
1 AT-ACTATTCGGGCTTCAAGCCTAGCAGGCAATAATGCCGGTGA
22029514 AAGAATTCGG
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
42 10 0.09
43 38 0.34
44 36 0.32
45 26 0.23
46 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (44 bp):
ATACTATTCGGGCTTCAAGCCTAGCAGGCAATAATGCCGGTGAG
Found at i:22029506 original size:87 final size:88
Alignment explanation
Indices: 22029340--22029513 Score: 237
Period size: 88 Copynumber: 2.0 Consensus size: 88
22029330 ATATCACACA
* * *
22029340 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATACTATTCGGGCTTCAAGC
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCAATAATACCAGTGAAATACTATTCGGGCTTCAAGC
* *
22029405 CTAGCAGGCGAAATGCCGGTGAG
66 CTAGCAGACAAAATGCCGGTGAG
* * *
22029428 ATACTATTTGGG-CTTTCGAGCCTAGTAGGCAATAATACCGGTGAAATGA-TA-TCGGGCTTCAA
1 ATACTATTCGGGCCTTT-GAGCCTAGCAGGCAATAATACCAGTGAAAT-ACTATTCGGGCTTCAA
22029490 GCCTAGCAGACAAAATGCCGGTGA
64 GCCTAGCAGACAAAATGCCGGTGA
22029514 AAGAATTCGG
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
87 37 0.49
88 38 0.50
89 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (88 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCAATAATACCAGTGAAATACTATTCGGGCTTCAAGC
CTAGCAGACAAAATGCCGGTGAG
Found at i:22030071 original size:16 final size:18
Alignment explanation
Indices: 22030040--22030072 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
22030030 AACTCGTCAC
22030040 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
22030058 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
22030073 AGCTTGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:22039295 original size:16 final size:16
Alignment explanation
Indices: 22039252--22039296 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
22039242 TGACAAAAGT
**
22039252 CGAAAAGCTAAAATAC
1 CGAAAAGCCGAAATAC
*
22039268 CGAAATGCCGAAATAC
1 CGAAAAGCCGAAATAC
*
22039284 CGAAAAGTCGAAA
1 CGAAAAGCCGAAA
22039297 GTTTGGCTAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.20, G:0.18, T:0.11
Consensus pattern (16 bp):
CGAAAAGCCGAAATAC
Found at i:22039562 original size:29 final size:29
Alignment explanation
Indices: 22039522--22039621 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
22039512 AATGTGACTA
*
22039522 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
22039551 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* * *
22039580 GGCCTAATAGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
*
22039608 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
22039622 CATTCAGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 15 0.25
29 46 0.75
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:22039620 original size:28 final size:29
Alignment explanation
Indices: 22039507--22039621 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
22039497 GTGAGCATGA
* * *
22039507 ATATGAATGTGA-CTAGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
22039535 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* *
22039564 ATAT-ACAGGTGATTTGGGCCTAATAGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
22039593 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
22039621 A
1 A
22039622 CATTCAGGTA
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 27 0.36
29 46 0.62
30 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:22039630 original size:57 final size:58
Alignment explanation
Indices: 22039522--22039630 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
22039512 AATGTGACTA
* * *
22039522 GGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACAGGCCATATAAATATGATTTGGGCCTAATGGGCCACATACAGGTGATTTG
* * * *
22039580 GGCCTAATAGGCCATATGAATATGA-TTGGGCTTAATGGGCCACATTCAGGT
1 GGCCTAACAGGCCATATAAATATGATTTGGGCCTAATGGGCCACATACAGGT
22039631 ATGTGAATTT
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 23 0.52
58 21 0.48
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (58 bp):
GGCCTAACAGGCCATATAAATATGATTTGGGCCTAATGGGCCACATACAGGTGATTTG
Found at i:22048926 original size:79 final size:82
Alignment explanation
Indices: 22048786--22048970 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 82
22048776 TCGAATGATG
* * * *
22048786 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCTGGACTAGGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
* *
22048850 CGTGTGAGTTAATA-AA
66 CGTGCGAGTCAATATAA
* **
22048866 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCAT
*
22048928 TCGTGCGAGTCACTATAA
65 TCGTGCGAGTCAATATAA
**
22048946 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22048971 AGCGAGTCGT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 54 0.61
80 34 0.38
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (82 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTCAATATAA
Found at i:22048927 original size:40 final size:40
Alignment explanation
Indices: 22048786--22048970 Score: 171
Period size: 40 Copynumber: 4.7 Consensus size: 40
22048776 TCGAATGATG
* *
22048786 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAA
* * * * ** *
22048826 TCTGGACTAGGAT-CCGAAGGCATTCGTGTGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAA
22048866 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
* * * * *
22048905 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AA
**
22048946 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22048971 AGCGAGTCGT
Statistics
Matches: 115, Mismatches: 25, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
39 32 0.28
40 75 0.65
41 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAA
Found at i:22049001 original size:79 final size:79
Alignment explanation
Indices: 22048838--22049003 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
22048828 TGGACTAGGA
* * * *
22048838 TCCGAAGGCATTCGTGTGAGTTAATAAATCCGGGCTAAGCCCGAAGGCATTTGTGCAAGTTACTA
1 TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
*
22048903 AACCCGGGTTAAGT
66 AACCCGGGTTAAAT
* * ** * **
22048917 CCCGAAGGCATTCGTGCGAGTCACTATAA-CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTCGT
1 TCCGAAGGCATTCGTGCGAGTCAATA-AATCCGGGCTAAG-CCCGAAGGCATTTGAGCAAGTCAC
* *
22048981 TATATCC-GGTTAAAT
64 TAAACCCGGGTTAAAT
22048996 TCCGAAGG
1 TCCGAAGG
22049004 TACGTGATTC
Statistics
Matches: 70, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
79 44 0.63
80 26 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGTCAATAAATCCGGGCTAAGCCCGAAGGCATTTGAGCAAGTCACTA
AACCCGGGTTAAAT
Found at i:22050434 original size:40 final size:40
Alignment explanation
Indices: 22050384--22050572 Score: 234
Period size: 40 Copynumber: 4.7 Consensus size: 40
22050374 TATTGATTCA
* * *
22050384 CACAATTGCCTTCGGGAATTATCCCGGATTTAGTAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG
* * *
22050424 CACGAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG
* * *
22050464 CACAAATGCCTTCGGGACTTAACTCGGTTTTGGTAACTCG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG
* * * *
22050504 CACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAG
1 CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCG
* *
22050545 CACAAAAGCCTTCGGGACTTAGCCCGGA
1 CACAAATGCCTTCGGGACTTAACCCGGA
22050573 CACCATTCGA
Statistics
Matches: 129, Mismatches: 19, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
40 103 0.80
41 26 0.20
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG
Found at i:22057354 original size:40 final size:39
Alignment explanation
Indices: 22057310--22057528 Score: 199
Period size: 40 Copynumber: 5.5 Consensus size: 39
22057300 GCTCGATTGT
* * *
22057310 CTTCGGGA-TATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACT-TAGCCCGGTT-TAGTAACTCGCACAAATGC
* * * *
22057350 CTTCGAGAATTAGCCCAGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAGCCC-GGTTTAGTAACTCGCACAAATGC
* * *
22057390 CTTTGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * *
22057430 CTTCGAGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGG-TTTAGTAACTCGCACAAATGC
* * * *
22057470 CTTCGGGAATT-GACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAG-CCCGG-TTTAGTAAC-TCGCACAAATGC
22057511 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
22057529 ACACCATTCG
Statistics
Matches: 149, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 118 0.79
41 29 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGTTTAGTAACTCGCACAAATGC
Found at i:22062766 original size:32 final size:32
Alignment explanation
Indices: 22062725--22062789 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
22062715 CCTTGCAAAA
22062725 GATTGGCTGCTTTTCATGTTAATCAAGTATAT
1 GATTGGCTGCTTTTCATGTTAATCAAGTATAT
22062757 GATTGGCTGCTTTTCATGTTAATCAAGTATAT
1 GATTGGCTGCTTTTCATGTTAATCAAGTATAT
22062789 G
1 G
22062790 TCTCGTTACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (32 bp):
GATTGGCTGCTTTTCATGTTAATCAAGTATAT
Found at i:22064621 original size:43 final size:44
Alignment explanation
Indices: 22064469--22064791 Score: 342
Period size: 43 Copynumber: 7.5 Consensus size: 44
22064459 TTAGTGACAT
* * * * *
22064469 CTTTTAT-AAAAGCGCCGCTAAAGA-CTAGGACCTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
* * * *
22064511 C-TCT-TAAAAAACGCCGCCAAAGACCAAG-ACCTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
* **
22064552 CTTTTTTAAAAAAACGCCGCTATAGACCAAGAAC-TTTAGCGATG
1 CTTTTAT-AAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
* *
22064596 CTTTTATAAAAAACGCCGCTATAGACCTA-TACTTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
* * *
22064639 CATTTATAAAAAACGCCGCTATAGACC-TGCACTTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
*
22064682 CTTTTGTAAAAAAAACGCCGCTATAGACCAAGAAC-TTTAGCGGCG
1 C-TTT-TATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
* * *
22064727 CTTTTATAAAAATCGCCGCTATAGACC-TGTACTTTTAGCGGCG
1 CTTTTATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
*
22064770 CTTTTGTAAAAAAACGCCGCTA
1 CTTTTAT-AAAAAACGCCGCTA
22064792 ATTTGCCTAG
Statistics
Matches: 241, Mismatches: 27, Indels: 24
0.83 0.09 0.08
Matches are distributed among these distances:
40 1 0.00
41 31 0.13
42 11 0.05
43 107 0.44
44 53 0.22
45 35 0.15
46 3 0.01
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (44 bp):
CTTTTATAAAAAACGCCGCTATAGACCAAGAACTTTTAGCGGCG
Found at i:22064724 original size:88 final size:88
Alignment explanation
Indices: 22064516--22064791 Score: 364
Period size: 88 Copynumber: 3.2 Consensus size: 88
22064506 CGGCGCTCTT
* * * *
22064516 AAAAAACGCCGCCAAAGACCAAGACCTTTAGCGGCGCTTTTTTAAAAAAACGCCGCTATAGACCA
1 AAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTAT-AAAAAACGCCGCTATAGACC-
* ** *
22064581 AGAAC-TTTAGCGATGC-TTT-TAT
64 TGAACTTTTAGCGGCGCTTTTGTAA
* * *
22064603 AAAAAACGCCGCTATAGACCTA-TACTTTTAGCGGCGCATTTATAAAAAACGCCGCTATAGACCT
1 AAAAAACGCCGCTATAGACCAAGAAC-TTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCT
*
22064667 GCACTTTTAGCGGCGCTTTTGTAA
65 GAACTTTTAGCGGCGCTTTTGTAA
*
22064691 AAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAATCGCCGCTATAGACCTG
1 AAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTG
*
22064756 TACTTTTAGCGGCGCTTTTGT-A
66 AACTTTTAGCGGCGCTTTTGTAA
22064778 AAAAAACGCCGCTA
1 AAAAAACGCCGCTA
22064792 ATTTGCCTAG
Statistics
Matches: 167, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
85 3 0.02
86 30 0.18
87 52 0.31
88 80 0.48
89 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (88 bp):
AAAAAACGCCGCTATAGACCAAGAACTTTAGCGGCGCTTTTATAAAAAACGCCGCTATAGACCTG
AACTTTTAGCGGCGCTTTTGTAA
Found at i:22064730 original size:131 final size:128
Alignment explanation
Indices: 22064469--22064792 Score: 429
Period size: 131 Copynumber: 2.5 Consensus size: 128
22064459 TTAGTGACAT
* * * * * *
22064469 CTTTTAT-AAAAGCGCCGCTAAAGA-CTAGGACCTTTAGCGGCGCTCTTAAAAAACGCCGCCAAA
1 CTTTTATAAAAAACGCCGCTATAGACCTA-TACTTTTAGCGGCGCTTTTAAAAAACGCCGCTAAA
* *
22064532 GACCAAGACCTTTAGCGGCGCTTTTTTAAAAAAACGCCGCTATAGACCAAGAACTTTAGCGATG
65 GACCAAGACCTTTAGCGGCGCTTTTTAAAAAAAACGCCGCTATAGACCAAGAACTTTAGCGACG
*
22064596 CTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGCATTTATAAAAAACGCCGCTAT
1 CTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGC-TTT-TAAAAAACGCCGCTAA
* * *
22064661 AGACC-TGCACTTTTAGCGGCGCTTTTGTAAAAAAAACGCCGCTATAGACCAAGAACTTTAGCGG
64 AGACCAAG-ACCTTTAGCGGCGCTTTT-TAAAAAAAACGCCGCTATAGACCAAGAACTTTAGCGA
22064725 CG
127 CG
* *
22064727 CTTTTATAAAAATCGCCGCTATAGACCTGTACTTTTAGCGGCGCTTTTGTAAAAAAACGCCGCTA
1 CTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGC-TTT-T-AAAAAACGCCGCTA
22064792 A
63 A
22064793 TTTGCCTAGT
Statistics
Matches: 173, Mismatches: 17, Indels: 9
0.87 0.09 0.05
Matches are distributed among these distances:
127 7 0.04
128 28 0.16
129 6 0.03
130 36 0.21
131 82 0.47
132 14 0.08
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (128 bp):
CTTTTATAAAAAACGCCGCTATAGACCTATACTTTTAGCGGCGCTTTTAAAAAACGCCGCTAAAG
ACCAAGACCTTTAGCGGCGCTTTTTAAAAAAAACGCCGCTATAGACCAAGAACTTTAGCGACG
Found at i:22065117 original size:21 final size:21
Alignment explanation
Indices: 22065093--22065136 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
22065083 GTTCTGCTCT
22065093 GCCTCCCTCGCTGCTGCCTCC
1 GCCTCCCTCGCTGCTGCCTCC
22065114 GCCTCCCTCGCTGCTGCCTCC
1 GCCTCCCTCGCTGCTGCCTCC
22065135 GC
1 GC
22065137 TCTAAGTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.00, C:0.57, G:0.20, T:0.23
Consensus pattern (21 bp):
GCCTCCCTCGCTGCTGCCTCC
Found at i:22065724 original size:18 final size:18
Alignment explanation
Indices: 22065692--22065729 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
22065682 TACAATATAG
22065692 TAGTAAAAATATTATTTAA
1 TAGTAAAAATATTA-TTAA
*
22065711 TAGTAAAAA-GTTATTAA
1 TAGTAAAAATATTATTAA
22065728 TA
1 TA
22065730 CTTGATAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 3 0.17
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
TAGTAAAAATATTATTAA
Found at i:22073164 original size:133 final size:133
Alignment explanation
Indices: 22072926--22073177 Score: 495
Period size: 133 Copynumber: 1.9 Consensus size: 133
22072916 GAATTCAACA
22072926 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
22072991 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
22073056 ATT
131 ATT
*
22073059 ATATAAAACGTGAGCAACAAGACAGCATTAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
1 ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
22073124 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
66 TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAAT
22073178 GGAATCACCA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
133 118 1.00
ACGTcount: A:0.51, C:0.19, G:0.10, T:0.20
Consensus pattern (133 bp):
ATATAAAACGTGAGCAACAAGACAGCAATAAACTCTTAAATCAATCTAAGTCCACACTAAACACA
TAAGTTGGATAGAAACATGAAAACAGACCAAAAGAACATCTAAATAACCAAAATATAACAATTTT
ATT
Done.