Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 81 of 433
Found at i:23805265 original size:101 final size:100
Alignment explanation
Indices: 23805132--23805320 Score: 306
Period size: 101 Copynumber: 1.9 Consensus size: 100
23805122 TGGTTTTAGG
*
23805132 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCATATAGCTAGGCCGCATGTCTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATAG-TAGGCCGCATGTCTAGTAC
*
23805197 TAAGTGCAGGCTATTATGCGTACCCGACAACTTCGA
65 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCGA
* * * * *
23805233 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGTATTGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATAGTAGGCCGCATGTCTAGTACT
23805298 AAGTGCAGGCTACTATGCGTACC
66 AAGTGCAGGCTACTATGCGTACC
23805321 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
100 39 0.48
101 42 0.52
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATATAGTAGGCCGCATGTCTAGTACT
AAGTGCAGGCTACTATGCGTACCCGACAACTTCGA
Found at i:23805355 original size:100 final size:101
Alignment explanation
Indices: 23805142--23805358 Score: 247
Period size: 100 Copynumber: 2.2 Consensus size: 101
23805132 TCACGTGTGT
* *
23805142 AGTACTAAGTGTAGGCTACTACGTGTACCATATAGCTAGGCCGCATGTCTAGTACTAAGTGCAGG
1 AGTAATAAGTGCAGGCTACTACGTGTACCATATAGCTAGGCCGCATGTCTAGTACTAAGTGCAGG
* * ** * *
23805207 CTATTATGCGTACCCGACAACTTCGATCACGTGTGT
66 CTACTATGCGTACCAGACAACTTCGATCACAAGGGC
* * * * * *
23805243 AGTACTAAGTGCAGGCTACTACGTGTACCGTATTG-TTGGTCGCATGTGTAGTACTAAGTGCAGG
1 AGTAATAAGTGCAGGCTACTACGTGTACCATATAGCTAGGCCGCATGTCTAGTACTAAGTGCAGG
* * * *
23805307 CTACTATGCGTACCAGATAGCTTCTATTACAAGGGC
66 CTACTATGCGTACCAGACAACTTCGATCACAAGGGC
* *
23805343 GGTAATATGTGCAGGC
1 AGTAATAAGTGCAGGC
23805359 CACCGAGTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
100 65 0.67
101 32 0.33
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (101 bp):
AGTAATAAGTGCAGGCTACTACGTGTACCATATAGCTAGGCCGCATGTCTAGTACTAAGTGCAGG
CTACTATGCGTACCAGACAACTTCGATCACAAGGGC
Found at i:23814650 original size:40 final size:39
Alignment explanation
Indices: 23814605--23814812 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
23814595 CGGAATACAA
*
23814605 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
** *
23814645 CCGGATATAACGTCTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
23814685 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
23814725 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
23814765 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
23814805 CCGGATAT
1 CCGGATAT
23814813 CATTCAATTG
Statistics
Matches: 142, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 1 0.01
40 141 0.99
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:23814745 original size:80 final size:80
Alignment explanation
Indices: 23814605--23814812 Score: 249
Period size: 80 Copynumber: 2.6 Consensus size: 80
23814595 CGGAATACAA
* * *
23814605 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
*
23814670 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * *
23814685 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGT-A-GTCACTAGCACAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGT--CTAGCACAAA
*
23814748 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
** * ** * *
23814765 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
23814813 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
78 2 0.02
79 1 0.01
80 106 0.97
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGTCTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:23822596 original size:40 final size:39
Alignment explanation
Indices: 23822551--23822758 Score: 220
Period size: 40 Copynumber: 5.2 Consensus size: 39
23822541 CGGAATACAA
* *
23822551 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
** *
23822591 CCGGATATAATGTCTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAATCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
23822631 CCGGATTTAA-CAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATC-AC-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
23822671 CCGGATGTAGTCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
* * * *
23822711 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAATCACT-GCACAAATGCCTTCGGGTCTTAGC
23822751 CCGGATAT
1 CCGGATAT
23822759 CATTTAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATATAATCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:23822691 original size:80 final size:80
Alignment explanation
Indices: 23822551--23822758 Score: 254
Period size: 80 Copynumber: 2.6 Consensus size: 80
23822541 CGGAATACAA
* * ** *
23822551 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATGTCTTGCACAAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATG
*
23822616 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
23822631 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATTG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATG
*
23822696 CCTTCGGGTCTTAAC
66 CCTTCGGGTATTAAC
** * ** * *
23822711 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
23822759 CATTTAATTG
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
80 108 1.00
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAATCACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:23831210 original size:34 final size:34
Alignment explanation
Indices: 23831165--23831275 Score: 127
Period size: 34 Copynumber: 3.3 Consensus size: 34
23831155 TGCATACTGT
23831165 ACTGATACTGTTACTGAAATGGGCTCTA-GCCCAG
1 ACTGATACTGTTACTGAAATGGGCTC-AGGCCCAG
* *
23831199 ATTGATACTGTTACTAAAATGGGCTCAGGCCCAG
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAG
* * * * *
23831233 ACTGCT-CTGTTACTGAAATGAGCTAAGACCCAA
1 ACTGATACTGTTACTGAAATGGGCTCAGGCCCAG
*
23831266 ACTGAGACTG
1 ACTGATACTG
23831276 CAAGGGCTTA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
33 27 0.42
34 37 0.58
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (34 bp):
ACTGATACTGTTACTGAAATGGGCTCAGGCCCAG
Found at i:23836183 original size:57 final size:57
Alignment explanation
Indices: 23836104--23836218 Score: 212
Period size: 57 Copynumber: 2.0 Consensus size: 57
23836094 TAAAGTGTGT
*
23836104 AGCTGAAAGTGAGCTTGCTGAGATCTTATATCATTGCCATTCATCTCCAAGTGGGGG
1 AGCTAAAAGTGAGCTTGCTGAGATCTTATATCATTGCCATTCATCTCCAAGTGGGGG
*
23836161 AGCTAAAAGTGAGGTTGCTGAGATCTTATATCATTGCCATTCATCTCCAAGTGGGGG
1 AGCTAAAAGTGAGCTTGCTGAGATCTTATATCATTGCCATTCATCTCCAAGTGGGGG
23836218 A
1 A
23836219 CACTTTGCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (57 bp):
AGCTAAAAGTGAGCTTGCTGAGATCTTATATCATTGCCATTCATCTCCAAGTGGGGG
Found at i:23841494 original size:13 final size:13
Alignment explanation
Indices: 23841484--23841513 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
23841474 GCAAAGGAGA
23841484 GAAGTAAAGGAAC
1 GAAGTAAAGGAAC
23841497 GAAGTAAAGGAAC
1 GAAGTAAAGGAAC
23841510 GAAG
1 GAAG
23841514 GAGCCCTCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.53, C:0.07, G:0.33, T:0.07
Consensus pattern (13 bp):
GAAGTAAAGGAAC
Found at i:23844000 original size:16 final size:15
Alignment explanation
Indices: 23843960--23844001 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
23843950 CGATGATAAT
23843960 TATTAATGTATAATTA
1 TATTAAT-TATAATTA
23843976 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
23843992 TATTAATTAT
1 TATTAATTAT
23844002 TATCAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:23844665 original size:24 final size:25
Alignment explanation
Indices: 23844613--23844672 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
23844603 AATTTTTCTC
* *
23844613 TTAAATTTTAAATTTATTTAATCAT
1 TTAATTTTTAAATTTATTGAATCAT
* *
23844638 TTAATTTTTCAATTTATTGAATTA-
1 TTAATTTTTAAATTTATTGAATCAT
23844662 TTAATATTTTA
1 TTAAT-TTTTA
23844673 TATTAATTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.58
Consensus pattern (25 bp):
TTAATTTTTAAATTTATTGAATCAT
Found at i:23853292 original size:16 final size:16
Alignment explanation
Indices: 23853271--23853306 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
23853261 AACGCCCCAA
23853271 AAATCTAGAAATCCAG
1 AAATCTAGAAATCCAG
*
23853287 AAATCTAGAAATCCTG
1 AAATCTAGAAATCCAG
23853303 AAAT
1 AAAT
23853307 TTTTTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.17, G:0.11, T:0.22
Consensus pattern (16 bp):
AAATCTAGAAATCCAG
Found at i:23854862 original size:29 final size:29
Alignment explanation
Indices: 23854822--23854921 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
23854812 AATGTGACTA
*
23854822 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
23854851 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
23854880 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
23854908 GGCTTAAGGGGCCA
1 GGCCTAATGGGCCA
23854922 GATACAGGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 15 0.24
29 47 0.76
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:23854893 original size:58 final size:57
Alignment explanation
Indices: 23854822--23854930 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
23854812 AATGTGACTA
* * *
23854822 GGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAACGGGCCATATAAATATGA-TTGGGCCTAAGGGGCCAGATACAGGTGATTTG
* * *
23854880 GGCCTAATGGGCCATATGAATATGATTGGGCTTAAGGGGCCAGATACAGGT
1 GGCCTAACGGGCCATATAAATATGATTGGGCCTAAGGGGCCAGATACAGGT
23854931 ATGTGAATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 23 0.51
58 22 0.49
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.26
Consensus pattern (57 bp):
GGCCTAACGGGCCATATAAATATGATTGGGCCTAAGGGGCCAGATACAGGTGATTTG
Found at i:23854919 original size:28 final size:29
Alignment explanation
Indices: 23854807--23854921 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
23854797 GTGAGCATGA
* * *
23854807 ATATGAATGTGA-CTAGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23854835 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23854864 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
23854893 ATATGAATATGA-TTGGGCTTAAGGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
23854921 A
1 A
23854922 GATACAGGTA
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:23859354 original size:28 final size:29
Alignment explanation
Indices: 23859244--23859358 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
23859234 GTGAGCATGA
* *
23859244 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23859272 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23859301 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
23859330 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
23859358 A
1 A
23859359 GATACAGGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:23859366 original size:57 final size:58
Alignment explanation
Indices: 23859257--23859367 Score: 170
Period size: 57 Copynumber: 1.9 Consensus size: 58
23859247 TGAATGTGAC
* *
23859257 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
23859315 TGGGCCTAATGGGCCATATGAATATGA-TTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGT
23859368 ATGTGAATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 24 0.50
58 24 0.50
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (58 bp):
TGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:23864160 original size:27 final size:27
Alignment explanation
Indices: 23864122--23864208 Score: 120
Period size: 27 Copynumber: 3.2 Consensus size: 27
23864112 GGTCATTAGG
23864122 ACCCCTGTAGTGCAAAATTACCGAAAT
1 ACCCCTGTAGTGCAAAATTACCGAAAT
*
23864149 ACCCCTGTAGTGCAAAATTATCGAAAT
1 ACCCCTGTAGTGCAAAATTACCGAAAT
* * * *
23864176 ACCCCTGTAGGGTAAAATGACTGAAAT
1 ACCCCTGTAGTGCAAAATTACCGAAAT
*
23864203 GCCCCT
1 ACCCCT
23864209 ATATGGTAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (27 bp):
ACCCCTGTAGTGCAAAATTACCGAAAT
Found at i:23864216 original size:27 final size:27
Alignment explanation
Indices: 23864135--23864222 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
23864125 CCTGTAGTGC
* * * * *
23864135 AAAATTACCGAAATACCCCTGTAGTGC
1 AAAATGACTGAAATACCCCTATAGGGT
* *
23864162 AAAATTA-TCGAAATACCCCTGTAGGGT
1 AAAATGACT-GAAATACCCCTATAGGGT
* *
23864189 AAAATGACTGAAATGCCCCTATATGGT
1 AAAATGACTGAAATACCCCTATAGGGT
23864216 AAAATGA
1 AAAATGA
23864223 TTGTTTTGCC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 51 0.98
28 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCTATAGGGT
Found at i:23866530 original size:54 final size:54
Alignment explanation
Indices: 23866466--23866568 Score: 197
Period size: 54 Copynumber: 1.9 Consensus size: 54
23866456 CCACATAGAA
23866466 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAAAAATT
1 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAAAAATT
*
23866520 ATATTGGTATTTAAAATGAATTTTGATAGTATATGAAATATTATGCAAA
1 ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAA
23866569 CTCGATATAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.44, C:0.03, G:0.14, T:0.40
Consensus pattern (54 bp):
ATATTGGTATTTAAAATGAATTTTGATAGTATACGAAATATTATGCAAAAAATT
Found at i:23881697 original size:40 final size:40
Alignment explanation
Indices: 23881456--23881683 Score: 404
Period size: 40 Copynumber: 5.7 Consensus size: 40
23881446 ATTCGGATTG
23881456 ATAACCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
23881495 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
23881535 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23881575 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
23881615 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23881655 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
23881684 AGCAAGAAGC
Statistics
Matches: 182, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 13 0.07
40 169 0.93
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:23884084 original size:25 final size:25
Alignment explanation
Indices: 23884050--23884099 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
23884040 TATGACTATG
23884050 CTGTTTATTTCTCTTAAAATTAGAC
1 CTGTTTATTTCTCTTAAAATTAGAC
*
23884075 CTGTTTATTTCTCTTAAACTTAGAC
1 CTGTTTATTTCTCTTAAAATTAGAC
23884100 TCAATAAGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.48
Consensus pattern (25 bp):
CTGTTTATTTCTCTTAAAATTAGAC
Found at i:23895511 original size:40 final size:40
Alignment explanation
Indices: 23895465--23895648 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
23895455 CTCGCACAAG
* *
23895465 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * **
23895505 GCCTTCGGGACTTAGCCCGGATATAATCGTTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
23895545 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
** * * *
23895585 GCCTTCGAATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
23895625 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23895649 CATTCGAATA
Statistics
Matches: 121, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.01
40 119 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:23895560 original size:80 final size:80
Alignment explanation
Indices: 23895438--23895648 Score: 241
Period size: 80 Copynumber: 2.7 Consensus size: 80
23895428 TCTTCGGGAT
* * * * *
23895438 TTAG-CCGGATACAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC-ACTAGCA
1 TTAGCCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-CAACTAGCA
* *
23895500 TAAATGCCTTCGGGA-C
65 CAAATGCCTTC-GAATC
** * *
23895516 TTAGCCCGGATATAATCGTTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTTGCAC
1 TTAGCCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCAC
23895581 AAATGCCTTCGAATC
66 AAATGCCTTCGAATC
* * * *
23895596 TTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
23895649 CATTCGAATA
Statistics
Matches: 112, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
78 4 0.04
79 18 0.16
80 90 0.80
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCAACTAGCAC
AAATGCCTTCGAATC
Found at i:23897549 original size:40 final size:40
Alignment explanation
Indices: 23897504--23897670 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
23897494 CGGAATATAA
23897504 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
** * *
23897544 CCGGATA-AATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
23897583 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
23897623 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
23897663 CCGGATAT
1 CCGGATAT
23897671 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 33 0.33
40 66 0.65
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:23905563 original size:40 final size:40
Alignment explanation
Indices: 23905518--23905685 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
23905508 CGGAATATAA
23905518 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
23905558 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * * *
23905598 CCGGATGTAGCCACTAGCGCAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
23905638 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
23905678 CCGGATAT
1 CCGGATAT
23905686 CATTCAATTT
Statistics
Matches: 101, Mismatches: 25, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:23907318 original size:118 final size:118
Alignment explanation
Indices: 23907110--23907323 Score: 428
Period size: 118 Copynumber: 1.8 Consensus size: 118
23907100 AAAAAGGGGA
23907110 ATTTGACATGCAAGTCCATTATTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCTATCG
1 ATTTGACATGCAAGTCCATTATTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCTATCG
23907175 TACTTTCAAAGTTCACTACTAAGTCCTTTCTTTGTCATACCGGCCACACTTGT
66 TACTTTCAAAGTTCACTACTAAGTCCTTTCTTTGTCATACCGGCCACACTTGT
23907228 ATTTGACATGCAAGTCCATTATTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCTATCG
1 ATTTGACATGCAAGTCCATTATTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCTATCG
23907293 TACTTTCAAAGTTCACTACTAAGTCCTTTCT
66 TACTTTCAAAGTTCACTACTAAGTCCTTTCT
23907324 AGTGGAATTC
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 96 1.00
ACGTcount: A:0.25, C:0.25, G:0.11, T:0.39
Consensus pattern (118 bp):
ATTTGACATGCAAGTCCATTATTTTGCATGCATGCTTTAATTAGTCATCACACATTTCCCTATCG
TACTTTCAAAGTTCACTACTAAGTCCTTTCTTTGTCATACCGGCCACACTTGT
Found at i:23912501 original size:15 final size:15
Alignment explanation
Indices: 23912475--23912523 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
23912465 CAAAGATAAC
23912475 AAGAAA-CC-GAATA
1 AAGAAATCCAGAATA
23912488 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
23912503 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
23912518 AAGAAA
1 AAGAAA
23912524 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
13 6 0.19
14 2 0.06
15 23 0.74
ACGTcount: A:0.59, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:23912532 original size:15 final size:15
Alignment explanation
Indices: 23912485--23912532 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
23912475 AAGAAACCGA
23912485 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
23912499 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
23912515 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
23912530 ATA
1 ATA
23912533 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:23915516 original size:45 final size:45
Alignment explanation
Indices: 23915452--23915626 Score: 219
Period size: 45 Copynumber: 3.8 Consensus size: 45
23915442 CATGTAACCG
23915452 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCAT
* *
23915497 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGA-TGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACTTCGC-A--T
* *** *
23915543 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCAT
*
23915590 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
23915627 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 36 0.33
46 34 0.31
47 32 0.29
49 3 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACTTCGCAT
Found at i:23915618 original size:93 final size:92
Alignment explanation
Indices: 23915460--23915630 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
23915450 CGCCATAAGT
23915460 GAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
23915525 GAGCTCAGATGCCTAGTTACATCTCTC
66 GAGCTCAGATGCCTAGTTACATCTCTC
*
23915552 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGAC-TTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
23915617 CGAGTTCGGATGCC
65 CGAGCTCAGATGCC
23915631 CAAATATCCT
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 29 0.39
93 46 0.61
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCAGATGCCTAGTTACATCTCTC
Found at i:23919641 original size:46 final size:46
Alignment explanation
Indices: 23919591--23919763 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
23919581 TGGTCGAGCA
23919591 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
23919637 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * *
23919682 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
23919730 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
23919764 GGGCGGGTTA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 4 0.04
46 58 0.55
47 28 0.27
48 4 0.04
50 5 0.05
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:23919747 original size:93 final size:93
Alignment explanation
Indices: 23919588--23919758 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
23919578 GGATGGTCGA
*
23919588 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
23919653 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * *
23919681 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
23919746 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23919759 ACTTAGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23920024 original size:19 final size:20
Alignment explanation
Indices: 23919987--23920024 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
23919977 ATAAGGTGGT
23919987 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
23920007 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
23920025 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:23923426 original size:40 final size:40
Alignment explanation
Indices: 23923371--23923580 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
23923361 AACATTGGAA
23923371 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
23923411 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
23923451 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
23923491 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
23923530 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
23923571 CTATATCCGG
1 ATATATCCGG
23923581 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:23931561 original size:40 final size:40
Alignment explanation
Indices: 23931506--23931715 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
23931496 GAACATTGAA
23931506 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
23931546 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
23931586 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
23931626 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
23931665 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
23931706 CTATATCCGG
1 ATATATCCGG
23931716 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:23934436 original size:55 final size:55
Alignment explanation
Indices: 23934328--23934436 Score: 121
Period size: 55 Copynumber: 2.0 Consensus size: 55
23934318 TCGTTTCTCC
* * *
23934328 CACGCCCGTGTTCATTTAACAGGTTCGACCATAGGTGTTAGACACAGGCGTGTCA
1 CACGCCCGTGCTCATTTAACAGGTTCGACCATAGGTCTTACACACAGGCGTGTCA
** * * * *
23934383 CACGCCCGTGCTGTTTTAACAGGTTC-ATCCATAGTTCTTCCACACGGGTGTGTC
1 CACGCCCGTGCTCATTTAACAGGTTCGA-CCATAGGTCTTACACACAGGCGTGTC
23934437 GTACGCCTAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
54 1 0.02
55 43 0.98
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.28
Consensus pattern (55 bp):
CACGCCCGTGCTCATTTAACAGGTTCGACCATAGGTCTTACACACAGGCGTGTCA
Found at i:23942178 original size:38 final size:38
Alignment explanation
Indices: 23942127--23942295 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
23942117 ATATTCGATG
* *
23942127 TATATCCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
23942165 TATATCTGGGTTAAGTCCCACAGGCTTCGTGCTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
23942203 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAA
1 TATATCTGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
*
23942243 AATATCTGGGTTAAA-CCCGCAGGCTTCGTGCTGGTAT
1 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
23942280 TATATCCGGGATAAAT
1 TATATCTGGGTTAAAT
23942296 ATTATATTCG
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
37 33 0.29
38 44 0.38
39 9 0.08
40 29 0.25
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:23944034 original size:48 final size:48
Alignment explanation
Indices: 23943939--23944042 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
23943929 TGTGCTAAGC
* * **
23943939 GTAAGACCTATCTGGGATAGGCATCAACGCAGCCTAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAACACAGCCTAGAGAGAACTAGT
* *
23943987 GTAAGACCTATC-GGGAATAGGCATCAGCACAG-GTAGAGCAGAACTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAACACAGCCTAGAG-AGAACTAGT
*
23944035 ATAAGACC
1 GTAAGACC
23944043 ATAGTTGGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
47 7 0.15
48 40 0.85
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.19
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAACACAGCCTAGAGAGAACTAGT
Found at i:23946587 original size:2 final size:2
Alignment explanation
Indices: 23946580--23946625 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
23946570 GTGAAAGTCG
23946580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23946621 -T AT AT
1 AT AT AT
23946626 TTTGAAAGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 40 0.95
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:23948026 original size:38 final size:38
Alignment explanation
Indices: 23947975--23948136 Score: 234
Period size: 38 Copynumber: 4.3 Consensus size: 38
23947965 ATATTCGATG
23947975 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * *
23948013 TATATTCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* *
23948051 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
* * * *
23948089 TATATCCCGGATAAATCCCACAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
*
23948127 TATATTCGGG
1 TATATCCGGG
23948137 CCTTCGTGCC
Statistics
Matches: 110, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 110 1.00
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAT
Found at i:23948199 original size:43 final size:43
Alignment explanation
Indices: 23948138--23948237 Score: 173
Period size: 43 Copynumber: 2.3 Consensus size: 43
23948128 ATATTCGGGC
*
23948138 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTTCCTAGCAAG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAAG
*
23948181 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAAG
*
23948224 CTTCGTACCGGTGA
1 CTTCGTGCCGGTGA
23948238 AATGATATGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.11, C:0.26, G:0.32, T:0.31
Consensus pattern (43 bp):
CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAAG
Found at i:23948621 original size:45 final size:42
Alignment explanation
Indices: 23948552--23948661 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 42
23948542 TGTTGACTTG
* * *
23948552 ATTATTCAGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGA
1 ATTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGA
**
23948594 GATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 -AT--TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGA
23948639 ATTGATATCGGGCC-TCGAGCCTA
1 ATT-AT-TCGGGCCTTCGAGCCTA
23948662 ACAGGCGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
42 1 0.02
43 13 0.22
44 9 0.16
45 35 0.60
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
ATTATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGA
Found at i:23956079 original size:33 final size:33
Alignment explanation
Indices: 23956042--23956113 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
23956032 CCCACAATGC
*
23956042 TACTGTATAAGG-CTAAGGCCCAGACTGTACTGT
1 TACTGTAT-AGGACTAAGGCCCAGACTGTACTGA
* ** *
23956075 TACTGAATAGGACTTTGGCCTAGACTGTACTGA
1 TACTGTATAGGACTAAGGCCCAGACTGTACTGA
23956108 TACTGT
1 TACTGT
23956114 GTTGTTTACT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 3 0.09
33 29 0.91
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (33 bp):
TACTGTATAGGACTAAGGCCCAGACTGTACTGA
Found at i:23960812 original size:12 final size:13
Alignment explanation
Indices: 23960795--23960824 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
23960785 TACTGCAATT
23960795 TAATTTTTATT-C
1 TAATTTTTATTAC
23960807 TAATTTTTATTAC
1 TAATTTTTATTAC
23960820 TAATT
1 TAATT
23960825 CTATTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (13 bp):
TAATTTTTATTAC
Found at i:23963702 original size:55 final size:55
Alignment explanation
Indices: 23963637--23963772 Score: 141
Period size: 55 Copynumber: 2.5 Consensus size: 55
23963627 GGCCGTGGGT
* * **
23963637 GAACGTGTCAAAATAACAAGGGCTTGCGACACGCCCGTGCCTTGA-AATCGTGGCC
1 GAACCTGTCAAAATAACAAGGGCGTGCGACACGCCCGTGCC-AAACAATCGTGGCC
* * * *
23963692 GAACCTGTCAAATTAACACA-GGCGTGCGGCATGCCCGTGCCAAACAATCGTGGGC
1 GAACCTGTCAAAATAACA-AGGGCGTGCGACACGCCCGTGCCAAACAATCGTGGCC
* * *
23963747 GAACCTGCCAAAACAACACGGGCGTG
1 GAACCTGTCAAAATAACAAGGGCGTG
23963773 GAGCTTCATT
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
54 1 0.02
55 64 0.97
56 1 0.02
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (55 bp):
GAACCTGTCAAAATAACAAGGGCGTGCGACACGCCCGTGCCAAACAATCGTGGCC
Found at i:23970530 original size:40 final size:39
Alignment explanation
Indices: 23970349--23970500 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
23970339 AATGTTCGAG
23970349 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
23970388 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
23970427 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
23970466 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
23970501 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:23977938 original size:40 final size:39
Alignment explanation
Indices: 23977757--23977908 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
23977747 AATGTTCGAG
23977757 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
23977796 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
23977835 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
23977874 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
23977909 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:23990854 original size:2 final size:2
Alignment explanation
Indices: 23990847--23990882 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
23990837 CAGCTTTTAT
23990847 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23990883 AGCTGTTCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23991504 original size:6 final size:6
Alignment explanation
Indices: 23991493--23991534 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
23991483 AAGACCTTGG
* *
23991493 AAAAGC AAAAGC GAAAGC GAAAGC GAAAA-C AAAAGC AAAAGC
1 AAAAGC AAAAGC AAAAGC AAAAGC -AAAAGC AAAAGC AAAAGC
23991535 CTAGCTAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 4 0.12
6 25 0.78
7 3 0.09
ACGTcount: A:0.62, C:0.17, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAGC
Found at i:23992063 original size:15 final size:16
Alignment explanation
Indices: 23992043--23992075 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
23992033 TATATATTTT
23992043 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
23992058 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
23992075 T
1 T
23992076 ATAACTAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:23992161 original size:22 final size:22
Alignment explanation
Indices: 23992122--23992180 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
23992112 ATTTTAAGAA
*
23992122 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
23992143 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
23992165 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
23992181 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:23992197 original size:26 final size:24
Alignment explanation
Indices: 23992151--23992210 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
23992141 ATTTGTTTTA
*
23992151 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
23992175 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
23992201 TTTTTTATTT
1 ATATTTATTT
23992211 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:23996724 original size:10 final size:11
Alignment explanation
Indices: 23996709--23996737 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
23996699 AGGTGATCAT
23996709 GGGCCGGG-TC
1 GGGCCGGGTTC
23996719 GGGCCGGGTTC
1 GGGCCGGGTTC
23996730 GGGCCGGG
1 GGGCCGGG
23996738 CCCATACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.00, C:0.28, G:0.62, T:0.10
Consensus pattern (11 bp):
GGGCCGGGTTC
Found at i:23996927 original size:26 final size:24
Alignment explanation
Indices: 23996897--23996946 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
23996887 AAATAAAAAA
*
23996897 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
23996923 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
23996947 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:23996966 original size:21 final size:21
Alignment explanation
Indices: 23996917--23996975 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
23996907 ATAATAAATC
*
23996917 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
23996937 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
23996959 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
23996976 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:23999668 original size:43 final size:41
Alignment explanation
Indices: 23999610--23999734 Score: 124
Period size: 42 Copynumber: 3.0 Consensus size: 41
23999600 CATCTATCTG
* * * *
23999610 AGATATCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATT
1 AGATTTCGTATAAGACCATGTCTGGGACACAGGCATCGATT
* **
23999651 GAGATTTATGTATAAGACCATGTCTGGGACATTGGCATCGTATT
1 -AGATTT-CGTATAAGACCATGTCTGGGACACAGGCATCG-ATT
* * * *
23999695 TGATTTCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 AGATTTCGTATAAGACCATGTCTGGGACACAGGCATCGAT
23999735 ATTGAATTAA
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.03
42 32 0.47
43 31 0.46
44 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (41 bp):
AGATTTCGTATAAGACCATGTCTGGGACACAGGCATCGATT
Found at i:23999721 original size:42 final size:43
Alignment explanation
Indices: 23999600--23999758 Score: 146
Period size: 43 Copynumber: 3.7 Consensus size: 43
23999590 GGAACATTGA
* *
23999600 CATC-TATCTGAGATATCGTGTAAGACCGTGTCTGGGACACAGG
1 CATCGTAT-TGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
* * * **
23999643 CCTCG-ATTGAGATTTATGTATAAGACCATGTCTGGGACATTGG
1 CATCGTATTGAGATTT-CGTGTAAGACCATGTCTGGGACACAGG
* * *
23999686 CATCGTATT-TGATTTCGTGTAAGACCCTGTCTGGGACAGAGG
1 CATCGTATTGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
***
23999728 CATCGATATTGA-ATTAAATGTAAGACCATGT
1 CATCG-TATTGAGATTTCGTGTAAGACCATGT
23999759 TCGGGACGTC
Statistics
Matches: 92, Mismatches: 19, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 34 0.37
43 55 0.60
44 3 0.03
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (43 bp):
CATCGTATTGAGATTTCGTGTAAGACCATGTCTGGGACACAGG
Found at i:23999773 original size:85 final size:84
Alignment explanation
Indices: 23999615--23999773 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 84
23999605 ATCTGAGATA
* * *
23999615 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTATGTATAAGACCATGTCTGGGA
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTAATG-ATAAGACCATGTCTGGGA
*
23999680 CATTGGCATCGTATTTGATT
65 CATCGGCATCGTATTTGATT
*
23999700 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-ATTAAATG-TAAGACCATGT-TCG
1 TCGTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATT-AATGATAAGACCATGTCT-G
*
23999762 GGACGTCGGCAT
62 GGACATCGGCAT
23999774 TGTACTTGTG
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
84 1 0.02
85 52 0.81
86 3 0.05
87 8 0.12
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTAATGATAAGACCATGTCTGGGAC
ATCGGCATCGTATTTGATT
Found at i:24000031 original size:19 final size:19
Alignment explanation
Indices: 24000007--24000044 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
23999997 TGAAATGGCT
24000007 ATGAATCTTTACTGTTAAA
1 ATGAATCTTTACTGTTAAA
24000026 ATGAATCTTTACTGTTAAA
1 ATGAATCTTTACTGTTAAA
24000045 TTGTACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (19 bp):
ATGAATCTTTACTGTTAAA
Found at i:24005625 original size:29 final size:28
Alignment explanation
Indices: 24005593--24005695 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
24005583 GGGACGAGAT
* *
24005593 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
24005622 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
24005651 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
24005680 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24005696 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:24009526 original size:13 final size:13
Alignment explanation
Indices: 24009508--24009536 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
24009498 TGTATGCTGG
24009508 ATTCTTAATATGA
1 ATTCTTAATATGA
24009521 ATTCTTAATATGA
1 ATTCTTAATATGA
24009534 ATT
1 ATT
24009537 AAATGATTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
ATTCTTAATATGA
Found at i:24011829 original size:25 final size:26
Alignment explanation
Indices: 24011781--24011835 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
24011771 CAAGGCATAT
*
24011781 AATTCATGATAACAAATAAACATTTA
1 AATTCATGATAACAAATAAACATTAA
*
24011807 AATTCAT-ATAAC-ATTAAAGCATTAA
1 AATTCATGATAACAAATAAA-CATTAA
24011832 AATT
1 AATT
24011836 TGTAATACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 14 0.54
26 7 0.27
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.33
Consensus pattern (26 bp):
AATTCATGATAACAAATAAACATTAA
Found at i:24018757 original size:25 final size:25
Alignment explanation
Indices: 24018727--24018851 Score: 81
Period size: 25 Copynumber: 5.2 Consensus size: 25
24018717 TAGGATTTTA
24018727 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * * *
24018752 TGTGAT-AAGGCCG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
24018774 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
* * *
24018799 TGTGAT-AAGGCTG-A-ATG-GCCA-A
1 TGTGATGAATG-TGAACATGCG-TATG
24018821 TGTGATGAATGTGAACATGCGTATG
1 TGTGATGAATGTGAACATGCGTATG
24018846 TGTGAT
1 TGTGAT
24018852 AAGGCCGAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 17 0.24
23 16 0.22
24 16 0.22
25 23 0.32
ACGTcount: A:0.29, C:0.10, G:0.32, T:0.29
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCGTATG
Found at i:24018777 original size:47 final size:47
Alignment explanation
Indices: 24018726--24018963 Score: 395
Period size: 47 Copynumber: 5.1 Consensus size: 47
24018716 TTAGGATTTT
24018726 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*
24018773 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
24018820 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
24018867 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
** * * *
24018914 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
24018961 ATG
1 ATG
24018964 CGAAATGTGT
Statistics
Matches: 182, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 182 1.00
ACGTcount: A:0.32, C:0.11, G:0.31, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:24019073 original size:46 final size:46
Alignment explanation
Indices: 24018937--24019073 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
24018927 GAACATGTAT
* *
24018937 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
24018983 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
24019029 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
24019074 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:24019319 original size:37 final size:37
Alignment explanation
Indices: 24019266--24019377 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
24019256 GTGGTGACTA
24019266 TGTCTGGGTTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCTGGG-TAAGACCCGATAACTTCGTGTGGAGATTT
* * *
24019304 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCTGGGTAAGACCCGATAACTTCGTGTGGAGATTT
* *
24019341 TGTCTGTGTAAGACCCGATAACATCGTGTGGAGATTT
1 TGTCTGGGTAAGACCCGATAACTTCGTGTGGAGATTT
24019378 CATCTGAGCT
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
37 59 0.89
38 7 0.11
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (37 bp):
TGTCTGGGTAAGACCCGATAACTTCGTGTGGAGATTT
Found at i:24023192 original size:28 final size:28
Alignment explanation
Indices: 24023127--24023225 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
24023117 CATGAGATTG
* * *
24023127 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
24023156 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
24023184 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
24023212 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
24023226 GCTTATTATA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:24023410 original size:41 final size:41
Alignment explanation
Indices: 24023365--24023447 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
24023355 GAGCTTGGTA
24023365 AGTCTTGAACCTATGTGGTGATTATACTTGAAGATAAATGC
1 AGTCTTGAACCTATGTGGTGATTATACTTGAAGATAAATGC
24023406 AGTCTTGAACCTATGTGGTGATTATACTTGAAGATAAATGC
1 AGTCTTGAACCTATGTGGTGATTATACTTGAAGATAAATGC
24023447 A
1 A
24023448 TCCAATGTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.34
Consensus pattern (41 bp):
AGTCTTGAACCTATGTGGTGATTATACTTGAAGATAAATGC
Found at i:24024828 original size:40 final size:40
Alignment explanation
Indices: 24024771--24024995 Score: 312
Period size: 40 Copynumber: 5.7 Consensus size: 40
24024761 CTAACGGGGT
* * * *
24024771 TAAGTCCCGAAGACATTTGTGCCAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
24024811 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
24024851 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
24024891 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * * *
24024931 TAAGTCCCGAAGGCATTTGTGCTAGTGAC-CATATCCAGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
* * *
24024971 TAAGACCCGACGGC-CTTGTGCGAGT
1 TAAGTCCCGAAGGCATTTGTGCGAGT
24024996 GGTTATATCT
Statistics
Matches: 172, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 11 0.06
40 161 0.94
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:24033513 original size:120 final size:121
Alignment explanation
Indices: 24033351--24033574 Score: 333
Period size: 122 Copynumber: 1.9 Consensus size: 121
24033341 CACAATAACA
* *
24033351 ATGAGAATGAGAATAGAAATGTAATGGGTATGAGGTTTTCCTAAT-CTCAATTTAACACAAAATG
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATTTAACACAAAATG
* *
24033415 TATGATAACTAACCTAGGAATGCAAATTAAATAATAGACATTGGCATGGTAATAGC
66 TAAGATAACTAACCTAAGAATGCAAATTAAATAATAGACATTGGCATGGTAATAGC
* * * ** *
24033471 ATGAGAATAAGCATAGTAATGTCATGGGTATGAGGTGTTCCTAATAACTTGATTTAACACGAAAT
1 ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAAT-ACTCAATTTAACACAAAAT
*
24033536 GTAAGATAACTAACCTAAGAATGCAAATTAAATGATAGA
65 GTAAGATAACTAACCTAAGAATGCAAATTAAATAATAGA
24033575 AAATTGAAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
120 40 0.44
122 51 0.56
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (121 bp):
ATGAGAATAAGAATAGAAATGTAATGGGTATGAGGTGTTCCTAATACTCAATTTAACACAAAATG
TAAGATAACTAACCTAAGAATGCAAATTAAATAATAGACATTGGCATGGTAATAGC
Found at i:24048434 original size:40 final size:40
Alignment explanation
Indices: 24048376--24048482 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 40
24048366 TTCGAATGAT
* *
24048376 ATCCGGGCTAAGTCCCGAAGGCTTT-GTGCTAAG-TGACTAA
1 ATCCGGACTAAGTCCCGAAGGCTTTCGAGC-AAGCT-ACTAA
24048416 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAG-TCCCGAAGGCTTTCGAGCAAGCTACTAA
** * *
24048456 ATCCGGGTTGAGTCCCGAAGGCATTCG
1 ATCCGGACTAAGTCCCGAAGGCTTTCG
24048483 TGCGAGTTAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 51 0.89
41 5 0.09
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATCCGGACTAAGTCCCGAAGGCTTTCGAGCAAGCTACTAA
Found at i:24050744 original size:29 final size:29
Alignment explanation
Indices: 24050711--24050841 Score: 154
Period size: 29 Copynumber: 4.5 Consensus size: 29
24050701 TGACGAGATC
*
24050711 GGCACTAAGTGTGCGTGCTGGGAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
*
24050740 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* *
24050769 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
* * ** * *
24050798 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
24050827 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
24050842 AGCTCGGAGG
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 89 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:24056085 original size:29 final size:29
Alignment explanation
Indices: 24056052--24056182 Score: 163
Period size: 29 Copynumber: 4.5 Consensus size: 29
24056042 TGACGAGATC
*
24056052 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
24056081 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
24056110 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
24056139 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
24056168 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
24056183 AGCTCGGAGG
Statistics
Matches: 90, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 90 1.00
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:24062613 original size:27 final size:28
Alignment explanation
Indices: 24062557--24062626 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24062547 AAACTTGTAC
24062557 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
24062585 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
24062612 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24062627 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:24062637 original size:27 final size:27
Alignment explanation
Indices: 24062557--24062638 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
24062547 AAACTTGTAC
* *
24062557 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
24062585 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
24062612 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
24062639 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24070586 original size:27 final size:28
Alignment explanation
Indices: 24070530--24070599 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24070520 AAACTTGTAC
24070530 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
24070558 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
24070585 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
24070600 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:24070610 original size:27 final size:27
Alignment explanation
Indices: 24070530--24070611 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
24070520 AAACTTGTAC
* *
24070530 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
24070558 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
24070585 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
24070612 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:24074035 original size:40 final size:40
Alignment explanation
Indices: 24073976--24074144 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
24073966 CGGGACTTTA
* * *
24073976 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
24074016 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
24074056 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
24074096 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
24074136 CCCGGATAT
1 CCCGGATAT
24074145 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:24076163 original size:19 final size:19
Alignment explanation
Indices: 24076139--24076177 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
24076129 AGGTAATCTC
24076139 ATACAATATCTCAATAGAG
1 ATACAATATCTCAATAGAG
24076158 ATACAATATCTCAATAGAG
1 ATACAATATCTCAATAGAG
24076177 A
1 A
24076178 CAGTCACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.26
Consensus pattern (19 bp):
ATACAATATCTCAATAGAG
Found at i:24078688 original size:49 final size:48
Alignment explanation
Indices: 24078635--24078859 Score: 270
Period size: 49 Copynumber: 4.5 Consensus size: 48
24078625 CTGGTACGCA
24078635 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTA-TCGGTACACG
* * ** *
24078684 TAGTAGCCTGCACTTAGTACAACACATGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATC-GGTACACG
* * * * *
24078734 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGTTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCGG-TACACG
*
24078785 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTAT-CGGTACACG
* *
24078834 TAGTAGCTTTCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
24078860 CGTGACCTCA
Statistics
Matches: 149, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
49 65 0.44
50 47 0.32
51 37 0.25
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCGGTACACG
Found at i:24078852 original size:100 final size:99
Alignment explanation
Indices: 24078635--24078866 Score: 299
Period size: 100 Copynumber: 2.3 Consensus size: 99
24078625 CTGGTACGCA
* * *
24078635 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
* *
24078700 GTACAACACATGTGACCTAACCATCTGATACACG
66 GTACAACACATGCGACCTAACCATCAGATACACG
* *
24078734 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTA-TCGGTTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATTCGG-TACACATAGTAGCCTGCAC
* **
24078798 TTAGTACTACACATGCGACC-AATTATCCAG-TACACG
63 TTAGTACAACACATGCGACCTAACCAT-CAGATACACG
* *
24078834 TAGTAGCTTTCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
24078867 TCATAATAGA
Statistics
Matches: 116, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
99 30 0.26
100 46 0.40
101 40 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
GTACAACACATGCGACCTAACCATCAGATACACG
Found at i:24083387 original size:51 final size:51
Alignment explanation
Indices: 24083311--24083430 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 51
24083301 AACTAAGTTA
* *
24083311 TCCGGATAAAATATGAAGCTCTTGTTAAAGCTAGAGCAAC-AGAGTAATTAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAG-GTAATAAT
* *
24083362 TCCGGATGAAATATGAAGCTCTTGTTGAAGTTAGAGCAACAAGGTAATAAT
1 TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAGGTAATAAT
*
24083413 TCCGGATGAAGTATGAAG
1 TCCGGATGAAATATGAAG
24083431 TAAGTTTGAG
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 61 0.97
52 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (51 bp):
TCCGGATGAAATATGAAGCTCTTGTTAAAGCTAGAGCAACAAGGTAATAAT
Found at i:24084239 original size:26 final size:23
Alignment explanation
Indices: 24084178--24084231 Score: 99
Period size: 23 Copynumber: 2.3 Consensus size: 23
24084168 TATGATTATT
24084178 TTCAGAATATGAATAATAAATTA
1 TTCAGAATATGAATAATAAATTA
*
24084201 TTCGGAATATGAATAATAAATTA
1 TTCAGAATATGAATAATAAATTA
24084224 TTCAGAAT
1 TTCAGAAT
24084232 TATCTGAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.35
Consensus pattern (23 bp):
TTCAGAATATGAATAATAAATTA
Found at i:24088107 original size:46 final size:46
Alignment explanation
Indices: 24088054--24088229 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
24088044 TATTTGGGCA
24088054 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
24088100 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
24088147 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
24088193 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24088230 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:24088209 original size:93 final size:93
Alignment explanation
Indices: 24088050--24088221 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24088040 GGGATATTTG
* *
24088050 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24088115 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
24088143 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24088208 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
24088222 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:24091201 original size:15 final size:15
Alignment explanation
Indices: 24091181--24091249 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
24091171 GTATCTTGGG
24091181 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
24091196 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
24091211 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
24091226 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
24091241 TTTCTTTAT
1 TTTCTTTAT
24091250 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:24091250 original size:30 final size:30
Alignment explanation
Indices: 24091172--24091259 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
24091162 CATAGTATCG
* * * *
24091172 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
24091202 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
24091232 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
24091260 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:24093693 original size:46 final size:46
Alignment explanation
Indices: 24093640--24093815 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
24093630 TATTTGGGCA
24093640 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
24093686 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
24093733 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
24093779 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24093816 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:24093795 original size:93 final size:93
Alignment explanation
Indices: 24093636--24093807 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24093626 GGGATATTTG
* *
24093636 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24093701 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
24093729 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24093794 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
24093808 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:24099158 original size:21 final size:21
Alignment explanation
Indices: 24099102--24099159 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
24099092 ATAATATTTA
*
24099102 AAAATA-TATATTTTTACATAG
1 AAAATATTA-ATTTTTAAATAG
* *
24099123 AAAAT-TTAAAGTTTTAAATAT
1 AAAATATT-AATTTTTAAATAG
24099144 AAAATATTAATTTTTA
1 AAAATATTAATTTTTA
24099160 CCATTAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
21 27 0.90
22 3 0.10
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (21 bp):
AAAATATTAATTTTTAAATAG
Found at i:24101370 original size:20 final size:20
Alignment explanation
Indices: 24101345--24101387 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
24101335 CCTGAAAGAC
24101345 TTAATACAGCTCAAATGATG
1 TTAATACAGCTCAAATGATG
*
24101365 TTAATACAGCTCACATGATG
1 TTAATACAGCTCAAATGATG
24101385 TTA
1 TTA
24101388 TTTCAAGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (20 bp):
TTAATACAGCTCAAATGATG
Found at i:24103058 original size:45 final size:45
Alignment explanation
Indices: 24103005--24103162 Score: 160
Period size: 45 Copynumber: 3.5 Consensus size: 45
24102995 CTTCAAAATT
*
24103005 AGTATCATTTTCAGATGCAGGATCAATCCTCTTTTCTTCCAAAAG
1 AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* * * *
24103050 AATATCATTATT-TGATGTAAGATCAATTCTCTTTTCTTCCAAAAG
1 AGTATCATT-TTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* ** * *
24103095 AGTAT--TGTGAATGGATGCAAGATCAATCCTCTTCTCTTCCAAAAT
1 AGTATCATTTTCA--GATGCAAGATCAATCCTCTTTTCTTCCAAAAG
* *
24103140 AGTATCAGTTTCAGATGTAAGAT
1 AGTATCATTTTCAGATGCAAGAT
24103163 TAATATTGTT
Statistics
Matches: 89, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
45 83 0.93
46 2 0.02
47 2 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (45 bp):
AGTATCATTTTCAGATGCAAGATCAATCCTCTTTTCTTCCAAAAG
Found at i:24103179 original size:90 final size:90
Alignment explanation
Indices: 24103018--24103183 Score: 219
Period size: 90 Copynumber: 1.8 Consensus size: 90
24103008 ATCATTTTCA
* * **
24103018 GATGCAGGATCAATCCTCTTTTCTTCCAAAAGAATATCATTATTTGATGTAAGATCAATTCTCTT
1 GATGCAAGATCAATCCTCTTCTCTTCCAAAAGAATATCATTATCAGATGTAAGATCAATTCTCTT
*
24103083 TTCTTCCAAAAGAGTATTGTGAATG
66 TCCTTCCAAAAGAGTATTGTGAATG
* * * *
24103108 GATGCAAGATCAATCCTCTTCTCTTCCAAAATAGTATCAGTT-TCAGATGTAAGATTAATAT-TG
1 GATGCAAGATCAATCCTCTTCTCTTCCAAAAGAATATCA-TTATCAGATGTAAGATCAAT-TCTC
24103171 TTTCCTTCCAAAA
64 TTTCCTTCCAAAA
24103184 CAACCTGATC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
90 62 0.95
91 3 0.05
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (90 bp):
GATGCAAGATCAATCCTCTTCTCTTCCAAAAGAATATCATTATCAGATGTAAGATCAATTCTCTT
TCCTTCCAAAAGAGTATTGTGAATG
Found at i:24107377 original size:23 final size:23
Alignment explanation
Indices: 24107351--24107398 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
24107341 TAAAATAAAG
*
24107351 AGTTTATTGGTAT-CAAAATTGTC
1 AGTTAATTGG-ATGCAAAATTGTC
24107374 AGTTAATTGGATGCAAAATTGTC
1 AGTTAATTGGATGCAAAATTGTC
24107397 AG
1 AG
24107399 ATTTGAGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (23 bp):
AGTTAATTGGATGCAAAATTGTC
Found at i:24110111 original size:25 final size:24
Alignment explanation
Indices: 24110035--24110112 Score: 74
Period size: 24 Copynumber: 3.2 Consensus size: 24
24110025 ATTATATAAA
24110035 TAAATGAGATAGTGGTT-AAAAAAC
1 TAAATGAGATA-TGGTTAAAAAAAC
*
24110059 TAAATTA-ATAT-GTTGAATAACAAA-
1 TAAATGAGATATGGTT-AA-AA-AAAC
24110083 TAAATGAGATATTGGTTAAAAAAAC
1 TAAATGAGATA-TGGTTAAAAAAAC
24110108 TAAAT
1 TAAAT
24110113 TAATATGTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
21 3 0.07
22 1 0.02
23 4 0.09
24 17 0.39
25 13 0.30
26 3 0.07
27 3 0.07
ACGTcount: A:0.53, C:0.04, G:0.14, T:0.29
Consensus pattern (24 bp):
TAAATGAGATATGGTTAAAAAAAC
Found at i:24111123 original size:3 final size:3
Alignment explanation
Indices: 24111117--24111148 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
24111107 GAGGAGGAGG
24111117 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
24111149 CTTTGGATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:24111512 original size:4 final size:4
Alignment explanation
Indices: 24111503--24111559 Score: 114
Period size: 4 Copynumber: 14.2 Consensus size: 4
24111493 TAAATATTCC
24111503 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
24111551 TGTA TGTA T
1 TGTA TGTA T
24111560 AATGGTGGCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 53 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:24122416 original size:21 final size:21
Alignment explanation
Indices: 24122398--24122439 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
24122388 CAAAATTTTA
*
24122398 ATTTTATATTTATAAA-TTTAT
1 ATTTTA-ATATATAAATTTTAT
*
24122419 ATTTTAATATGTAAATTTTAT
1 ATTTTAATATATAAATTTTAT
24122440 TATCACTATC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
ATTTTAATATATAAATTTTAT
Found at i:24128719 original size:20 final size:19
Alignment explanation
Indices: 24128694--24128735 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
24128684 CGGAAAATTA
24128694 TTTCTGAAAAATGATTTACT
1 TTTCTG-AAAATGATTTACT
*
24128714 TTTCTGGAAATGATTTACT
1 TTTCTGAAAATGATTTACT
24128733 TTT
1 TTT
24128736 ATGGTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.50
Consensus pattern (19 bp):
TTTCTGAAAATGATTTACT
Found at i:24130977 original size:17 final size:18
Alignment explanation
Indices: 24130957--24130991 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24130947 TATGGAATTT
*
24130957 CCAATTA-CTTGGACCTC
1 CCAATTATCATGGACCTC
24130974 CCAATTATCATGGACCTC
1 CCAATTATCATGGACCTC
24130992 AAAGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.34, G:0.11, T:0.29
Consensus pattern (18 bp):
CCAATTATCATGGACCTC
Found at i:24133261 original size:21 final size:21
Alignment explanation
Indices: 24133227--24133270 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
24133217 AAATCTCTAC
*
24133227 AATTTCTCCCTAAAGCTCTCA
1 AATTTCTCACTAAAGCTCTCA
* **
24133248 AATTTCTCATTAAATTTCTCA
1 AATTTCTCACTAAAGCTCTCA
24133269 AA
1 AA
24133271 GCTCTTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.25, G:0.02, T:0.39
Consensus pattern (21 bp):
AATTTCTCACTAAAGCTCTCA
Found at i:24135093 original size:18 final size:18
Alignment explanation
Indices: 24135070--24135113 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
24135060 TAACCAAGTG
* *
24135070 TGTATCTTATCCCTTATA
1 TGTATCCTAACCCTTATA
24135088 TGTATCCTAACCCTTATA
1 TGTATCCTAACCCTTATA
*
24135106 TGTTTCCT
1 TGTATCCT
24135114 TTTCCCAGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.20, C:0.25, G:0.07, T:0.48
Consensus pattern (18 bp):
TGTATCCTAACCCTTATA
Found at i:24136383 original size:34 final size:34
Alignment explanation
Indices: 24136317--24136391 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 34
24136307 AAACCCTAAA
*
24136317 TAATTTATTTAAAAACCCCAAACCTTAATTTAAT
1 TAATTTATTTAAAAACCCAAAACCTTAATTTAAT
* * *
24136351 TAATTTATTTAAACACCATAAAACC-TAGTTTAAT
1 TAATTTATTTAAAAACC-CAAAACCTTAATTTAAT
*
24136385 TTATTTA
1 TAATTTA
24136392 AAACCTTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 30 0.86
35 5 0.14
ACGTcount: A:0.43, C:0.15, G:0.01, T:0.41
Consensus pattern (34 bp):
TAATTTATTTAAAAACCCAAAACCTTAATTTAAT
Found at i:24136393 original size:21 final size:22
Alignment explanation
Indices: 24136369--24136418 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
24136359 TTAAACACCA
*
24136369 TAAAACC-TAGTTTAATTTATT
1 TAAAACCTTAATTTAATTTATT
*
24136390 TAAAACCTTAATTTTATTTATT
1 TAAAACCTTAATTTAATTTATT
24136412 TAAAACC
1 TAAAACC
24136419 CTAAAACCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 7 0.27
22 19 0.73
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (22 bp):
TAAAACCTTAATTTAATTTATT
Found at i:24136474 original size:33 final size:34
Alignment explanation
Indices: 24136405--24136475 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
24136395 CCTTAATTTT
* *
24136405 ATTTATTTAAAACCCTAAAACCCTAATTTACTTA
1 ATTTATTTAAAACCATAAAACCCTAATTTACATA
*
24136439 ATTTATTTAAAAACCAT-AAA-CTTAATTTACATA
1 ATTTATTT-AAAACCATAAAACCCTAATTTACATA
24136472 ATTT
1 ATTT
24136476 TTACAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 15 0.45
34 11 0.33
35 7 0.21
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (34 bp):
ATTTATTTAAAACCATAAAACCCTAATTTACATA
Found at i:24140228 original size:17 final size:18
Alignment explanation
Indices: 24140197--24140231 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24140187 ATCTTATTTT
*
24140197 AGGATTTTTATTATTTAA
1 AGGAGTTTTATTATTTAA
24140215 AGGAGTTTTA-TATTTAA
1 AGGAGTTTTATTATTTAA
24140232 TTATTATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.51
Consensus pattern (18 bp):
AGGAGTTTTATTATTTAA
Found at i:24141134 original size:22 final size:23
Alignment explanation
Indices: 24141109--24141152 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
24141099 GTTCGTGTAA
24141109 TTAAATTG-TATATT-TGTATGTT
1 TTAAATTGAT-TATTATGTATGTT
24141131 TTAAATTGATTATTATGTATGT
1 TTAAATTGATTATTATGTATGT
24141153 GTATTGTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.57
Consensus pattern (23 bp):
TTAAATTGATTATTATGTATGTT
Found at i:24141407 original size:24 final size:26
Alignment explanation
Indices: 24141354--24141401 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
24141344 TTGGCTCTCT
24141354 TGAG-CTTCTCGTTATATAGTTCTTG
1 TGAGCCTTCTCGTTATATAGTTCTTG
24141379 TGAGCCTTC-CGTTA-ATAGTTCTT
1 TGAGCCTTCTCGTTATATAGTTCTT
24141402 CGGAGCATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.41
25 9 0.41
26 4 0.18
ACGTcount: A:0.17, C:0.19, G:0.19, T:0.46
Consensus pattern (26 bp):
TGAGCCTTCTCGTTATATAGTTCTTG
Found at i:24141509 original size:25 final size:25
Alignment explanation
Indices: 24141481--24141546 Score: 64
Period size: 25 Copynumber: 2.7 Consensus size: 25
24141471 CTCGCTTGAA
24141481 CTTCCCGATATATGGCTATCCGAAG
1 CTTCCCGATATATGGCTATCCGAAG
* * *
24141506 CTTCCTGAT-TAATGGCTCTTCGAAG
1 CTTCCCGATAT-ATGGCTATCCGAAG
* *
24141531 CTACCCGTTAT-TGGCT
1 CTTCCCGATATATGGCT
24141547 CGCATGAGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
24 6 0.18
25 26 0.79
26 1 0.03
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (25 bp):
CTTCCCGATATATGGCTATCCGAAG
Found at i:24141556 original size:24 final size:24
Alignment explanation
Indices: 24141529--24141589 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
24141519 GGCTCTTCGA
*
24141529 AGCTACCCGTTATTGGCTCGCATG
1 AGCTTCCCGTTATTGGCTCGCATG
* **
24141553 AGCTTCCTGATTA-TGGCTCTTATG
1 AGCTTCCCG-TTATTGGCTCGCATG
24141577 AGCTTCCCGTTAT
1 AGCTTCCCGTTAT
24141590 ACAACCCAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 3 0.10
24 24 0.80
25 3 0.10
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.36
Consensus pattern (24 bp):
AGCTTCCCGTTATTGGCTCGCATG
Found at i:24142929 original size:43 final size:44
Alignment explanation
Indices: 24142866--24142966 Score: 152
Period size: 43 Copynumber: 2.3 Consensus size: 44
24142856 TTTCGAATAC
* *
24142866 CCACAC-GGCTTGTGACACAGGTGTGTCTCCCCACACGTCCTGA
1 CCACACGGGCTTGTGAAACAGGTGTGTCTCCCCACACGGCCTGA
24142909 -CACACGGGCTTGTGAAACAGGTGTGTCTCCCCACACGGCCTGA
1 CCACACGGGCTTGTGAAACAGGTGTGTCTCCCCACACGGCCTGA
* *
24142952 CCACATGGGATTGTG
1 CCACACGGGCTTGTG
24142967 TCCCTTACAC
Statistics
Matches: 52, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 5 0.10
43 35 0.67
44 12 0.23
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.21
Consensus pattern (44 bp):
CCACACGGGCTTGTGAAACAGGTGTGTCTCCCCACACGGCCTGA
Found at i:24157683 original size:22 final size:22
Alignment explanation
Indices: 24157644--24157686 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24157634 ATCACTCTTC
*
24157644 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCTTTTATTATTCTTTTT
24157666 CTCTCCATTTT-TTATTCTTTT
1 CTCTCC-TTTTATTATTCTTTT
24157687 CTTCTTCTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (22 bp):
CTCTCCTTTTATTATTCTTTTT
Found at i:24157691 original size:24 final size:23
Alignment explanation
Indices: 24157639--24157691 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 23
24157629 TTCTAATCAC
*
24157639 TCTTCCTCTCCTTTTATTTTTCTT
1 TCTT-CTCTCCTTTTATTATTCTT
24157663 T-TTCTCTCCATTTT-TTATTCTTT
1 TCTTCTCTCC-TTTTATTATTC-TT
24157686 TCTTCT
1 TCTTCT
24157692 TCTGTTCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
22 11 0.44
23 9 0.36
24 5 0.20
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (23 bp):
TCTTCTCTCCTTTTATTATTCTT
Found at i:24158966 original size:27 final size:28
Alignment explanation
Indices: 24158926--24159037 Score: 126
Period size: 27 Copynumber: 4.1 Consensus size: 28
24158916 AGGAAGCGTC
*
24158926 CTGGTGGCTATGCCACAATTATCT-TAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
*
24158953 CTGGTGGCTTTGCCACATATT-TCTGT-T
1 CTGGTGGCTCTGCCACA-ATTATCTGTAT
**
24158980 CTGGTGGCTCTGCCATGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* *
24159008 CTGGTGACTCTGTCAC-ATTATCTGT-T
1 CTGGTGGCTCTGCCACAATTATCTGTAT
24159034 CTGG
1 CTGG
24159038 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.11
27 48 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.40
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:24159032 original size:54 final size:54
Alignment explanation
Indices: 24158926--24159037 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
24158916 AGGAAGCGTC
* * *
24158926 CTGGTGGCTATGCCACAATTATCTTATCTGGTGGCTTTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTTATCTGGTGACTCTGCCACATATATCTGTT
* ** *
24158980 CTGGTGGCTCTGCCATGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-TATCTGGTGACTCTGCCACATATATCTGTT
24159034 CTGG
1 CTGG
24159038 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.40
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTTATCTGGTGACTCTGCCACATATATCTGTT
Found at i:24169353 original size:33 final size:33
Alignment explanation
Indices: 24169311--24169376 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
24169301 TTTCTTCTTG
*
24169311 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
1 ACATTCCAGCTCCTGTCCAACAACAAAACACTC
*
24169344 ACATTCCAGCTCCTGTCCAACAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAACAACAAAACACTC
24169377 CCACTCAGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.41, G:0.08, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAACAACAAAACACTC
Found at i:24180815 original size:46 final size:46
Alignment explanation
Indices: 24180760--24180981 Score: 254
Period size: 46 Copynumber: 4.8 Consensus size: 46
24180750 TATTTGGGCA
24180760 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
24180806 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGCTGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
24180852 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* *
24180897 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * ** *
24180945 CCCGAGCTCGTTGAGTTGAGTTTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24180982 GCGGGTTACA
Statistics
Matches: 151, Mismatches: 16, Indels: 18
0.82 0.09 0.10
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
45 3 0.02
46 105 0.70
47 27 0.18
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:24183072 original size:19 final size:19
Alignment explanation
Indices: 24183016--24183074 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
24183006 AAAAACATAA
*
24183016 AAATA-TTTTATTAATATT
1 AAATATTTTTATTAATTTT
*
24183034 -AATATTTTAAATTAGA-TTT
1 AAATATTTT-TATTA-ATTTT
24183053 AAATATTTTTATTAATTTT
1 AAATATTTTTATTAATTTT
24183072 AAA
1 AAA
24183075 CAATAAAATA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
17 4 0.12
18 4 0.12
19 16 0.48
20 9 0.27
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
AAATATTTTTATTAATTTT
Found at i:24188836 original size:15 final size:15
Alignment explanation
Indices: 24188816--24188846 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
24188806 CCTTAGAAAG
24188816 TTAAAACCCAAACCA
1 TTAAAACCCAAACCA
24188831 TTAAAACCCAAACCA
1 TTAAAACCCAAACCA
24188846 T
1 T
24188847 CCGTTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (15 bp):
TTAAAACCCAAACCA
Done.