Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 82 of 433
Found at i:24193534 original size:37 final size:37
Alignment explanation
Indices: 24193474--24193582 Score: 184
Period size: 37 Copynumber: 2.9 Consensus size: 37
24193464 AGCTCAGATG
*
24193474 AAATCTCCACACGAAGT-TATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCT-TCGGGTCTTACCCGGACA
*
24193511 AAATCTCCACACGTAGTCTTCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCTTCGGGTCTTACCCGGACA
24193548 AAATCTCCACACGTAGTCTTCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCTTCGGGTCTTACCCGGA
24193583 ATATATTTCT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 67 0.99
38 1 0.01
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCTTCGGGTCTTACCCGGACA
Found at i:24194022 original size:26 final size:24
Alignment explanation
Indices: 24193980--24194050 Score: 65
Period size: 25 Copynumber: 2.9 Consensus size: 24
24193970 GATTATGTAG
24193980 AAAGAATAAAGAAATGAAAAAAAAAA
1 AAAGAA-AAAGAAATG-AAAAAAAAA
* * *
24194006 AAAGAAAGAGAATATGAAGAAAAAC
1 AAAGAAAAAGAA-ATGAAAAAAAAA
*
24194031 AAAGAAAAGGAAA--AAAAAAA
1 AAAGAAAAAGAAATGAAAAAAA
24194051 GTGTTCATTC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 6 0.16
24 1 0.03
25 22 0.58
26 9 0.24
ACGTcount: A:0.77, C:0.01, G:0.15, T:0.06
Consensus pattern (24 bp):
AAAGAAAAAGAAATGAAAAAAAAA
Found at i:24196847 original size:48 final size:48
Alignment explanation
Indices: 24196789--24196975 Score: 338
Period size: 48 Copynumber: 3.9 Consensus size: 48
24196779 ATATACACAC
* * *
24196789 ATCTCCTACATATTTCACACTAGCCCTTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
24196837 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
24196885 ATCTCATACATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
24196933 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATA
24196976 GCCATTCGGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 134 1.00
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:24196978 original size:21 final size:21
Alignment explanation
Indices: 24196948--24196996 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
24196938 ATACATATTT
24196948 CACATTAGCCATTCGGCTTTAC
1 CACA-TAGCCATTCGGCTTTAC
24196970 CACATAGCCATTCGGCTTTAC
1 CACATAGCCATTCGGCTTTAC
24196991 CACATA
1 CACATA
24196997 TACATATCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.27, C:0.33, G:0.12, T:0.29
Consensus pattern (21 bp):
CACATAGCCATTCGGCTTTAC
Found at i:24196987 original size:69 final size:69
Alignment explanation
Indices: 24196900--24197044 Score: 272
Period size: 69 Copynumber: 2.1 Consensus size: 69
24196890 ATACATATTT
*
24196900 CACATTAGTCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
1 CACA-TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGC
24196965 TTTAC
65 TTTAC
24196970 CACATAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
1 CACATAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
24197035 TTAC
66 TTAC
24197039 CACATA
1 CACATA
24197045 TACATATATT
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
69 70 0.95
70 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (69 bp):
CACATAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCT
TTAC
Found at i:24200542 original size:25 final size:25
Alignment explanation
Indices: 24200491--24200562 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 25
24200481 CACTCTCTCA
* * * *
24200491 AGCCATATAACGGGATGCTCATGTG
1 AGCCATATAACAGGAAGCTTATTTG
* * *
24200516 AGCCATGTAATAGGAGGCTTATTTG
1 AGCCATATAACAGGAAGCTTATTTG
*
24200541 AGCCTTATAACAGGAAGCTTAT
1 AGCCATATAACAGGAAGCTTAT
24200563 AAGAACCATA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTTATTTG
Found at i:24202117 original size:17 final size:17
Alignment explanation
Indices: 24202095--24202127 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
24202085 TGAAAACAGA
24202095 CTGTTACAACTCTCCCG
1 CTGTTACAACTCTCCCG
24202112 CTGTTACAACTCTCCC
1 CTGTTACAACTCTCCC
24202128 ATTTTAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.18, C:0.42, G:0.09, T:0.30
Consensus pattern (17 bp):
CTGTTACAACTCTCCCG
Found at i:24204592 original size:46 final size:46
Alignment explanation
Indices: 24204524--24204789 Score: 233
Period size: 46 Copynumber: 5.7 Consensus size: 46
24204514 TTGGGCATCT
*
24204524 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * * *
24204570 AAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* *
24204617 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
24204663 GAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* * * *
24204710 GAGCTCGTTGAGTTGATTCTGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
24204756 GAGCTTGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24204790 GCGGGTTACA
Statistics
Matches: 177, Mismatches: 25, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.05
45 6 0.03
46 83 0.47
47 54 0.31
48 6 0.03
50 8 0.05
51 6 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:24204638 original size:47 final size:47
Alignment explanation
Indices: 24204573--24204736 Score: 185
Period size: 47 Copynumber: 3.5 Consensus size: 47
24204563 AACGTCCAAA
*
24204573 CTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAG
* * * *
24204620 CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCTGAA
1 CTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGCATCCGAG
*
24204666 CTCGTTGAGTTGAGTCTGAGTTCATGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAG
* *
24204713 CTCGTTGAGTTGATTCTGAGTTCA
1 CTCGTTGAGTTGAGTCCGAGTTCA
24204737 CTTATGGATG
Statistics
Matches: 97, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 27 0.28
47 50 0.52
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTAGGCATCCGAG
Found at i:24204676 original size:93 final size:93
Alignment explanation
Indices: 24204517--24204782 Score: 424
Period size: 93 Copynumber: 2.9 Consensus size: 93
24204507 CGAATATTTG
* * * *
24204517 GGCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
24204582 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
24204610 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
24204675 TTGAGTCTGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
24204703 GGCATCCGAGCTCGTTGAGTTGATTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
24204768 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
24204783 CTTATGGGCG
Statistics
Matches: 158, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:24210023 original size:13 final size:13
Alignment explanation
Indices: 24210002--24210031 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
24209992 GGCACACGCT
*
24210002 CGTGTGGCCAGGC
1 CGTGGGGCCAGGC
24210015 CGTGGGGCCAGGC
1 CGTGGGGCCAGGC
24210028 CGTG
1 CGTG
24210032 TGTCTTACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.30, G:0.50, T:0.13
Consensus pattern (13 bp):
CGTGGGGCCAGGC
Found at i:24211564 original size:46 final size:48
Alignment explanation
Indices: 24211483--24211656 Score: 174
Period size: 49 Copynumber: 3.6 Consensus size: 48
24211473 TATAATGACA
** * *
24211483 ATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-CATCAAG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAATCAAGACCG
* * *
24211529 ATGCCATGTCCTAGACATGGTTTTACACTAACTATCGAAATCGAGACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATC-AAATCAAGACCG
* * * * **
24211578 ACGCCATGTCCCAGACATGGTCTTACACTAGCTCTTAGATAT-TTGTACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCA-A-ATCAAG-ACCG
24211628 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
24211657 GACACCTCTA
Statistics
Matches: 106, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 32 0.30
48 6 0.06
49 34 0.32
50 34 0.32
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATCAAATCAAGACCG
Found at i:24211767 original size:46 final size:46
Alignment explanation
Indices: 24211680--24211820 Score: 171
Period size: 46 Copynumber: 3.1 Consensus size: 46
24211670 GTGCTGAAGC
* * * **
24211680 CATGTCCTAAACATGGTCTTACACTGAC--ACATCTCGTTGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCAATGCCGATG
24211725 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAATGCCGATG
* * *
24211771 CATGTCCCAGACATGTCCTACACTAGCTCTA-ATCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCAATGCCGATG
24211817 CATG
1 CATG
24211821 GCCTTACACT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
44 12 0.14
45 12 0.14
46 59 0.69
47 2 0.02
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTTACATCTCAATGCCGATG
Found at i:24218153 original size:25 final size:25
Alignment explanation
Indices: 24218102--24218173 Score: 63
Period size: 25 Copynumber: 2.9 Consensus size: 25
24218092 CACTCTCTCA
** * * *
24218102 AGCCATATAACGGGATGCTCATGTG
1 AGCCATATAATAGGAAGCTTATCTG
* *
24218127 AGCCATGTAATAGGAGGCTTATCTG
1 AGCCATATAATAGGAAGCTTATCTG
* *
24218152 AGTCTTATAATAGGAAGCTTAT
1 AGCCATATAATAGGAAGCTTAT
24218174 AAGAACCATA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (25 bp):
AGCCATATAATAGGAAGCTTATCTG
Found at i:24218339 original size:26 final size:25
Alignment explanation
Indices: 24218284--24218351 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 25
24218274 GAGCTATATT
* *
24218284 GGGAAGCTCATAAAGAGCCTTTAATT
1 GGGAAGCTCAT-AAGAGCCTATAATC
24218310 GGGAAGCTCATGAAGAGCCATATAA-C
1 GGGAAGCTCAT-AAGAGCC-TATAATC
*
24218336 GGGACGCTCATAAGAG
1 GGGAAGCTCATAAGAG
24218352 ATGTGATGTG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.14
26 28 0.76
27 4 0.11
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (25 bp):
GGGAAGCTCATAAGAGCCTATAATC
Found at i:24221445 original size:33 final size:33
Alignment explanation
Indices: 24221408--24221472 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
24221398 CAAATTTAAT
*
24221408 TTAAGTATTT-ATTT-ATTTTAATAATGAAAAAAA
1 TTAAGTATTTAATTTAAATTTAA-AA-GAAAAAAA
24221441 TTAAGTATTTAATTTAAATTTAAAAGAAAAAA
1 TTAAGTATTTAATTTAAATTTAAAAGAAAAAA
24221473 GAAAACAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 17 0.59
34 6 0.21
35 6 0.21
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (33 bp):
TTAAGTATTTAATTTAAATTTAAAAGAAAAAAA
Found at i:24221753 original size:23 final size:23
Alignment explanation
Indices: 24221722--24221771 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
24221712 ATTCACGTCG
** *
24221722 CCACATGTCACTTTTTTATATGT
1 CCACATGTCACTTCATTATACGT
*
24221745 CCACTTGTCACTTCATTATACGT
1 CCACATGTCACTTCATTATACGT
24221768 CCAC
1 CCAC
24221772 GTGCCAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.30, G:0.08, T:0.40
Consensus pattern (23 bp):
CCACATGTCACTTCATTATACGT
Found at i:24222085 original size:17 final size:17
Alignment explanation
Indices: 24222063--24222114 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
24222053 TTCACAGAAT
*
24222063 CAAATCTTTTAAGATTA
1 CAAATCTTCTAAGATTA
* *
24222080 CAAATCCTCTAAGATTG
1 CAAATCTTCTAAGATTA
* *
24222097 CATATCTTCGAAGATTA
1 CAAATCTTCTAAGATTA
24222114 C
1 C
24222115 TTCCCATACT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.35
Consensus pattern (17 bp):
CAAATCTTCTAAGATTA
Found at i:24229197 original size:26 final size:27
Alignment explanation
Indices: 24229168--24229227 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
24229158 TGATATATTG
**
24229168 AATTTTACCG-GGAGTAAAATGGTCAA
1 AATTTTACCGAGGAGTAAAATCATCAA
* * *
24229194 AATTTCATCGAGGGGTAAAATCATCAA
1 AATTTTACCGAGGAGTAAAATCATCAA
24229221 AATTTTA
1 AATTTTA
24229228 TTGGAGTAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (27 bp):
AATTTTACCGAGGAGTAAAATCATCAA
Found at i:24232564 original size:31 final size:31
Alignment explanation
Indices: 24232526--24232586 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
24232516 TTGAATCTAC
24232526 TGAAACATATATGCTTTCAAGTCATACCTAT
1 TGAAACATATATGCTTTCAAGTCATACCTAT
* *
24232557 TGAAACATATGTGCTTTCGAGTCATACCTA
1 TGAAACATATATGCTTTCAAGTCATACCTA
24232587 CTAATCCCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (31 bp):
TGAAACATATATGCTTTCAAGTCATACCTAT
Found at i:24232734 original size:38 final size:37
Alignment explanation
Indices: 24232683--24232779 Score: 126
Period size: 38 Copynumber: 2.6 Consensus size: 37
24232673 TACTAAAAGT
* *
24232683 AGCTCAAACGAGAAAATTTTACTGTTATACTG-ATGTG
1 AGCTCAAATGAGAAAATTCTACTGTTATACTGAATG-G
24232720 AAGCTCAAATGAGAAAATTCTACTGTTATACTGAATGG
1 -AGCTCAAATGAGAAAATTCTACTGTTATACTGAATGG
*
24232758 AGCTCAAATAAGCAAAA-TCTAC
1 AGCTCAAATGAG-AAAATTCTAC
24232780 ATATACACTG
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
37 16 0.30
38 35 0.65
39 3 0.06
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (37 bp):
AGCTCAAATGAGAAAATTCTACTGTTATACTGAATGG
Found at i:24235234 original size:12 final size:12
Alignment explanation
Indices: 24235219--24235247 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
24235209 ATATATTTAA
24235219 AAATATTAAAAT
1 AAATATTAAAAT
24235231 AAATATTAAAAT
1 AAATATTAAAAT
24235243 AAATA
1 AAATA
24235248 AAAATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATATTAAAAT
Found at i:24235234 original size:24 final size:25
Alignment explanation
Indices: 24235176--24235236 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
24235166 CTTATTTCAT
* *
24235176 TAAATAAAAAAATTTAAAAATATAA
1 TAAATAAATATATTTAAAAATATAA
*
24235201 TAAATCAAATATATTTAAAAATATTA
1 TAAAT-AAATATATTTAAAAATATAA
24235227 -AAATAAATAT
1 TAAATAAATAT
24235237 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 9 0.28
26 17 0.53
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAATAAATATATTTAAAAATATAA
Found at i:24235256 original size:21 final size:20
Alignment explanation
Indices: 24235176--24235262 Score: 61
Period size: 21 Copynumber: 4.0 Consensus size: 20
24235166 CTTATTTCAT
24235176 TAAATAAAAAAAT-TTAAAAA
1 TAAATAAAAAAATATT-AAAA
24235196 TATAATAAATCAAATATATTTAAAA
1 TA-AATAAA--AAA-ATA-TTAAAA
*
24235221 -ATATTAAAATAAATATTAAAA
1 TA-AATAAAA-AAATATTAAAA
*
24235242 TAAATAAAAATAATACTAAAA
1 TAAATAAAAA-AATATTAAAA
24235263 CAATTTTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
20 3 0.05
21 27 0.49
22 5 0.09
23 5 0.09
24 9 0.16
25 4 0.07
26 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAATAAAAAAATATTAAAA
Found at i:24235341 original size:15 final size:16
Alignment explanation
Indices: 24235311--24235351 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
24235301 AAATAGTTAT
24235311 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
24235328 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
24235343 A--AAAAATTA
1 ATTAAAAATTA
24235352 TATATTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 2 0.09
15 8 0.35
17 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:24238474 original size:2 final size:2
Alignment explanation
Indices: 24238467--24238517 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
24238457 ATGTATGATC
24238467 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
24238509 TG TG TG TG T
1 TG TG TG TG T
24238518 TTGTTTACGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:24240613 original size:17 final size:17
Alignment explanation
Indices: 24240593--24240637 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
24240583 AATCAAATAT
24240593 TCTAAGATTACAAATTC
1 TCTAAGATTACAAATTC
* * *
24240610 TCTAAGATTGCATATTT
1 TCTAAGATTACAAATTC
*
24240627 TCGAAGATTAC
1 TCTAAGATTAC
24240638 TTCCCATATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (17 bp):
TCTAAGATTACAAATTC
Found at i:24242344 original size:20 final size:19
Alignment explanation
Indices: 24242321--24242378 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 19
24242311 TTTTGGTACT
*
24242321 CTCTCGTAATTTTTTGTATG
1 CTCTCG-AATTTTTTGTATA
* *
24242341 CTCTAAGAATTTTTGGTATA
1 CTCT-CGAATTTTTTGTATA
*
24242361 CTTTCGAAATTTTTTGTA
1 CTCTCG-AATTTTTTGTA
24242379 GTCTCTCAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.52
Consensus pattern (19 bp):
CTCTCGAATTTTTTGTATA
Found at i:24242390 original size:20 final size:20
Alignment explanation
Indices: 24242328--24242390 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
24242318 ACTCTCTCGT
*
24242328 AATTTTTTGTATGCTCT-AA
1 AATTTTTTGTATACTCTCAA
* * *
24242347 GAATTTTTGGTATACTTTCGA
1 -AATTTTTTGTATACTCTCAA
24242368 AATTTTTTGTAGT-CTCTCAA
1 AATTTTTTGTA-TACTCTCAA
24242388 AAT
1 AAT
24242391 AAAATTTCTA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
20 32 0.94
21 2 0.06
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (20 bp):
AATTTTTTGTATACTCTCAA
Found at i:24242621 original size:20 final size:20
Alignment explanation
Indices: 24242560--24242639 Score: 58
Period size: 20 Copynumber: 4.0 Consensus size: 20
24242550 TTTCTCATTG
*
24242560 TTTTT-GTATA-TCCTCGTAA
1 TTTTTAGTATACT-CTCGAAA
* * *
24242579 TTTTTTGTATACCCT-AAACA
1 TTTTTAGTATACTCTCGAA-A
*
24242599 TTTTTAGTATACTTTCGAAA
1 TTTTTAGTATACTCTCGAAA
* *
24242619 TTTTTTGTATTCTCTCGAAA
1 TTTTTAGTATACTCTCGAAA
24242639 T
1 T
24242640 AAAATTTCTA
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
19 6 0.13
20 39 0.83
21 2 0.04
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (20 bp):
TTTTTAGTATACTCTCGAAA
Found at i:24243141 original size:20 final size:21
Alignment explanation
Indices: 24243096--24243143 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
24243086 TTCTCCTGTA
*
24243096 ATTTTTTTGTAGTCTCTTAT-
1 ATTTTTTTGTAGTCTCTCATC
* *
24243116 GTTTTTTTTTAGTCTCTCATC
1 ATTTTTTTGTAGTCTCTCATC
24243137 ATTTTTT
1 ATTTTTT
24243144 GCATTTCCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.12, C:0.12, G:0.08, T:0.67
Consensus pattern (21 bp):
ATTTTTTTGTAGTCTCTCATC
Found at i:24243231 original size:20 final size:20
Alignment explanation
Indices: 24243224--24243266 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
24243214 TTATTTCCTT
24243224 ATAATATTTAGTATTCCCTC
1 ATAATATTTAGTATTCCCTC
* *
24243244 ATAATATTTGGTACTCCCTC
1 ATAATATTTAGTATTCCCTC
24243264 ATA
1 ATA
24243267 TTTTTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (20 bp):
ATAATATTTAGTATTCCCTC
Found at i:24251778 original size:28 final size:27
Alignment explanation
Indices: 24251738--24251816 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 27
24251728 TTTATTCAGT
*
24251738 AAAACTCCTATTTTATTGGGATTGAATCA
1 AAAATTCC-ATTTTATTGGGATTGAAT-A
*
24251767 AAAATTCCATTTTATGGGGATTGAATA
1 AAAATTCCATTTTATTGGGATTGAATA
*
24251794 AAAACTCCCATTTTATTGGGATT
1 AAAA-TTCCATTTTATTGGGATT
24251817 CATGATTGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
27 5 0.11
28 33 0.73
29 7 0.16
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (27 bp):
AAAATTCCATTTTATTGGGATTGAATA
Found at i:24253460 original size:16 final size:16
Alignment explanation
Indices: 24253438--24253475 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
24253428 GTTCTTTCCA
24253438 ATGAAGACATAATATC
1 ATGAAGACATAATATC
*
24253454 GTGAAGACATAATATC
1 ATGAAGACATAATATC
24253470 ATGAAG
1 ATGAAG
24253476 TAGGCATTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.11, G:0.18, T:0.24
Consensus pattern (16 bp):
ATGAAGACATAATATC
Found at i:24256957 original size:51 final size:49
Alignment explanation
Indices: 24256839--24256979 Score: 174
Period size: 51 Copynumber: 2.8 Consensus size: 49
24256829 CAAGCTATTT
* *
24256839 GGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCC
* * * * * **
24256888 GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTG
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAATTATCC
*
24256939 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
24256980 TCACAATAGA
Statistics
Matches: 77, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 35 0.45
50 2 0.03
51 40 0.52
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (49 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCC
Found at i:24261279 original size:3 final size:3
Alignment explanation
Indices: 24261273--24261349 Score: 104
Period size: 3 Copynumber: 25.7 Consensus size: 3
24261263 ACTTTTAAAA
* *
24261273 AAT AAT AAT AAA AAT AA- AGA- AAG AAAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AA-T AAT AAT AAT AAT AAT AAT
24261318 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
24261350 AATGGAAAGG
Statistics
Matches: 68, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.03
3 64 0.94
4 2 0.03
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:24271009 original size:30 final size:30
Alignment explanation
Indices: 24270973--24271030 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
24270963 CACGGGCTGG
*
24270973 CACATGGGTGTGT-GGCCAGCCCGTGTGGCT
1 CACATGGGCGTGTGGGCCA-CCCGTGTGGCT
*
24271003 CACATGGGCGTGTGGGCTACCCGTGTGG
1 CACATGGGCGTGTGGGCCACCCGTGTGG
24271031 ATCTTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.10, C:0.26, G:0.41, T:0.22
Consensus pattern (30 bp):
CACATGGGCGTGTGGGCCACCCGTGTGGCT
Found at i:24273874 original size:46 final size:46
Alignment explanation
Indices: 24273824--24273996 Score: 156
Period size: 46 Copynumber: 3.7 Consensus size: 46
24273814 TGGTTGAGCA
* *
24273824 TCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
24273870 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * * *
24273915 CATCCGAACTCGTTGAGTTGATTCGGAGTTCACTTTTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24273963 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
24273997 GGGGCGGGTT
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 56 0.57
47 27 0.27
48 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:24273980 original size:93 final size:93
Alignment explanation
Indices: 24273821--24273991 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
24273811 GGATGGTTGA
* * *
24273821 GCATCCGAGCTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
24273886 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * * *
24273914 GCATCCGAACTCGTTGAGTTGATTCGGAGTTCACTTTTGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
24273979 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
24273992 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGACTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:24276317 original size:13 final size:13
Alignment explanation
Indices: 24276299--24276340 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
24276289 CCCCATTTAT
24276299 AGATACAGATAAC
1 AGATACAGATAAC
24276312 AGATACAGATAAC
1 AGATACAGATAAC
*
24276325 AGATGCAGATATAC
1 AGATACAGATA-AC
24276339 AG
1 AG
24276341 CGCCAACATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 23 0.85
14 4 0.15
ACGTcount: A:0.50, C:0.14, G:0.19, T:0.17
Consensus pattern (13 bp):
AGATACAGATAAC
Found at i:24284747 original size:14 final size:14
Alignment explanation
Indices: 24284728--24284764 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
24284718 TCAAAACAAG
24284728 AATTAAGAACACAT
1 AATTAAGAACACAT
24284742 AATTAAGAACACAT
1 AATTAAGAACACAT
24284756 AATTAAGAA
1 AATTAAGAA
24284765 TAAGTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.59, C:0.11, G:0.08, T:0.22
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:24285143 original size:13 final size:13
Alignment explanation
Indices: 24285125--24285176 Score: 104
Period size: 13 Copynumber: 4.0 Consensus size: 13
24285115 GCTCGGCAGG
24285125 GACACGCCCGTGT
1 GACACGCCCGTGT
24285138 GACACGCCCGTGT
1 GACACGCCCGTGT
24285151 GACACGCCCGTGT
1 GACACGCCCGTGT
24285164 GACACGCCCGTGT
1 GACACGCCCGTGT
24285177 ACGAGTACTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:24286505 original size:42 final size:43
Alignment explanation
Indices: 24286424--24286505 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
24286414 TCCCAGACGT
* * *
24286424 GGTCTTATATGTAATCAAATATCGATGGCACTATCCCAGATAG
1 GGTCTTACATGAAATCAAATATCGATGGCAATATCCCAGATAG
*
24286467 GGTCTTACATGAAATCAAATA-CGAT-GCAGATGTCCCAGA
1 GGTCTTACATGAAATCAAATATCGATGGCA-ATATCCCAGA
24286506 ATTGGTCTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
41 3 0.09
42 12 0.35
43 19 0.56
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGGCAATATCCCAGATAG
Found at i:24294026 original size:42 final size:42
Alignment explanation
Indices: 24293938--24294040 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 42
24293928 CAATGCCAAC
* * * * *
24293938 TCCCAGACTGGTCTTACATGTAATCAAATATCGATGGCACTT
1 TCCCAGACAGGTCTTACATGAAATCAAATATAGATGCCACTG
24293980 TCCCAGACAGGATCTTACATGAAATCAAATA-AGATGCCGA-TG
1 TCCCAGACAGG-TCTTACATGAAATCAAATATAGATGCC-ACTG
24294022 TCCCAGACATGGTCTTACA
1 TCCCAGACA-GGTCTTACA
24294041 CGTAACTCTA
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
42 32 0.60
43 21 0.40
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.26
Consensus pattern (42 bp):
TCCCAGACAGGTCTTACATGAAATCAAATATAGATGCCACTG
Found at i:24295979 original size:40 final size:39
Alignment explanation
Indices: 24295890--24296073 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
24295880 CGAAGGATGA
* *
24295890 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
*
24295930 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24295969 CCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACCAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAT
* *
24296009 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AT
* *
24296049 CCGGGCTATGTCCCTAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
24296074 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 81 0.66
41 8 0.07
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24296025 original size:79 final size:81
Alignment explanation
Indices: 24295889--24296071 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
24295879 TCGAAGGATG
* * *
24295889 ACCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
24295953 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
24295968 TCCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACCAAATCCGGGTTAAG-TCCCGAAGGCA
1 -ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
24296030 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
24296048 ACCGGGCTATGTCCCTAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATT
24296072 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 60 0.68
80 27 0.31
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ACCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:24296104 original size:79 final size:79
Alignment explanation
Indices: 24295941--24296106 Score: 176
Period size: 79 Copynumber: 2.1 Consensus size: 79
24295931 CGGACTAAGA
* ***
24295941 TCCGAAGGCATTTGTGCGAGTTACTAATCCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACCA
1 TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACCA
*
24296006 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* * * *
24296020 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCTAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
* * *
24296083 CTATAT-CTGGTTAAAT
63 CCAAATCCGGGTTAAAT
24296099 TCCGAAGG
1 TCCGAAGG
24296107 TACGTGATTC
Statistics
Matches: 71, Mismatches: 13, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
78 2 0.03
79 50 0.70
80 19 0.27
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACCA
AATCCGGGTTAAAT
Found at i:24313300 original size:286 final size:285
Alignment explanation
Indices: 24312747--24313317 Score: 851
Period size: 286 Copynumber: 2.0 Consensus size: 285
24312737 GAGTTAACTG
* *
24312747 AGTTTATTAGATTAAATTTGAAGAAAATGAAAAAGTGAATAAACACAAGGCCAAGCTTGTAGTGA
1 AGTTTATAAGATTAAATTTGAAGAAAATGAAAAAGAGAATAAACACAAGGCCAAGCTTGTAGTGA
* *
24312812 AGGAGTATGCATAACAACATGGGGTGGATGACATAGAAGTTTTTACTTGTGACATGTAAATAGAC
66 AGGAGTATGCATAACAACATGGGGTGGATGACATAGAAGTTTTTACCTATGACATGTAAATAGAC
* *
24312877 AATTCAATGAGTGATAGCACTTGCAACTCAAAAGGTATAGTCCATATACTAACCAGACAAGTCAG
131 AATACAATGAGTGATAGCACTTGCAACTCAAAAGGTATAGCCCATATACTAACCAGACAAGTCAG
* * *
24312942 CATTTTTTACATGGTGAGCTACATGAAAAGTTTTTTTGGAACAACCTTGTGGTTATGTGTAAAAG
196 CATTTTTTACAAGGTGAGCTACATGAAAAG-TTTTGTGGAACAACCTTATGGTTATGTGTAAAAG
24313007 GGAGGTGAGCAAAAAGATTACAAGTA
260 GGAGGTGAGCAAAAAGATTACAAGTA
* * *
24313033 AGTTTATAAGATTATATTTGATGAAAATGAAAAAGAGAATGAACACAAGGCCAAGCTTGTAGTGA
1 AGTTTATAAGATTAAATTTGAAGAAAATGAAAAAGAGAATAAACACAAGGCCAAGCTTGTAGTGA
** *
24313098 AGG-GTATGCATAACAACATGGGGTGGATGACATAGATTTTTTTACACCTATGACATGTATATAG
66 AGGAGTATGCATAACAACATGGGGTGGATGACATAGAAGTTTTT--ACCTATGACATGTAAATAG
* ** * *
24313162 ACAATACAATTAGTGATAGCACTTGCGTCTCAAAAAGG-ATGGCCCATATACTAACTAGACAAGT
129 ACAATACAATGAGTGATAGCACTTGCAACTC-AAAAGGTATAGCCCATATACTAACCAGACAAGT
* * * *
24313226 CAGCATTTTTTATAAGGTGAGTTGCATGAAATA-TTTTGTGGAACAATCTTATGGTTATGTGTAA
193 CAGCATTTTTTACAAGGTGAGCTACATGAAA-AGTTTTGTGGAACAACCTTATGGTTATGTGTAA
*
24313290 AAGGGAGGTGAGCAAAAGGATTACAAGT
257 AAGGGAGGTGAGCAAAAAGATTACAAGT
24313318 TAAAAAAGGC
Statistics
Matches: 256, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
285 38 0.15
286 118 0.46
287 93 0.36
288 7 0.03
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (285 bp):
AGTTTATAAGATTAAATTTGAAGAAAATGAAAAAGAGAATAAACACAAGGCCAAGCTTGTAGTGA
AGGAGTATGCATAACAACATGGGGTGGATGACATAGAAGTTTTTACCTATGACATGTAAATAGAC
AATACAATGAGTGATAGCACTTGCAACTCAAAAGGTATAGCCCATATACTAACCAGACAAGTCAG
CATTTTTTACAAGGTGAGCTACATGAAAAGTTTTGTGGAACAACCTTATGGTTATGTGTAAAAGG
GAGGTGAGCAAAAAGATTACAAGTA
Found at i:24314754 original size:43 final size:42
Alignment explanation
Indices: 24314661--24314781 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 42
24314651 CGAGATGTGA
* * * *
24314661 TTACATGTAAGACCATGTCTGGGACATTTGCATTGTATTGAGC
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCGA-C
24314704 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATCGA-
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T-ATCGAC
* *
24314747 TTTCGTGTAAGA-CACTGTCTGGGACAGTGGCATCG
1 TTACGTGTAAGACCA-TGTCTGGGACATTGGCATCG
24314782 ATATGTTATA
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
42 2 0.03
43 62 0.90
44 1 0.01
45 4 0.06
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCGAC
Found at i:24316714 original size:39 final size:40
Alignment explanation
Indices: 24316614--24316877 Score: 324
Period size: 40 Copynumber: 6.7 Consensus size: 40
24316604 TCGAATGATG
* * *
24316614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGA-TTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
24316653 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24316694 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
24316733 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24316773 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
24316812 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
24316851 AACTGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24316878 AACGAGTAGC
Statistics
Matches: 195, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
39 71 0.36
40 113 0.58
41 11 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24316750 original size:79 final size:79
Alignment explanation
Indices: 24316667--24316875 Score: 357
Period size: 79 Copynumber: 2.6 Consensus size: 79
24316657 GGACTAAGAT
*
24316667 CCGAAGGCATTTGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATTACGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
24316732 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
*
24316746 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATTACGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
24316811 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
24316825 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTTGTGCGAGTTACTAATTAC-GGGCTAAG-CCCGAAGGCATT
24316876 TGAACGAGTA
Statistics
Matches: 124, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
78 3 0.02
79 109 0.88
80 12 0.10
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATTACGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:24316828 original size:119 final size:121
Alignment explanation
Indices: 24316614--24316877 Score: 351
Period size: 119 Copynumber: 2.2 Consensus size: 121
24316604 TCGAATGATG
* *
24316614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGATTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGATAATATCCGGACTAAGACCCGAAGGCATT
* * *
24316678 TGTGCGAGTTACTAATTTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AA
66 GGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
* * * *
24316733 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGA-TAATATCCGGACTAAGACCCGAAGGCAT
* *
24316795 TGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65 TGGTGCGAGTTACTAAATCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAA
* *
24316853 -CTGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
24316878 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
118 34 0.27
119 81 0.64
120 12 0.09
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (121 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGATAATATCCGGACTAAGACCCGAAGGCATT
GGTGCGAGTTACTAAATCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:24321062 original size:40 final size:39
Alignment explanation
Indices: 24321004--24321221 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 39
24320994 CGGATGATAA
* *
24321004 CCGGGCTAAGCCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA-T
24321044 CCGGGCTAAGCCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGCCC-GAAGGCATTTGTGCGAGTTACTATAT
* ** *
24321084 CCCGGCTAAGTCCCGAAGGCATTTGTGATAGTTACCATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
*
24321124 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
* *
24321164 CCGGGCTAAGTCTCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
24321204 CC-GGCTAAATCCCGAAGG
1 CCGGGCT-AAGCCCGAAGG
24321222 TACTTGGTTT
Statistics
Matches: 157, Mismatches: 16, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 16 0.10
40 137 0.87
41 4 0.03
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:24321204 original size:80 final size:80
Alignment explanation
Indices: 24321000--24321221 Score: 292
Period size: 80 Copynumber: 2.8 Consensus size: 80
24320990 TATTCGGATG
*
24321000 ATAACCGGGCTAAGCCCCGAAGGCATTTGTGCTAGT-GACTA-ATTCCGGGCTAAG-CCCTGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAG-CTATA-TCCGGGCTAAGTCCC-GAAG
24321062 GCATTTGTGCGAGTTACT
63 GCATTTGTGCGAGTTACT
* * * *
24321080 ATATCCCGGCTAAGTCCCGAAGGCATTTGTGATAGTTA-CCATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TAGCTATATCCGGGCTAAGTCCCGAAGGC
24321144 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
* * * *
24321160 ATAACCGGGCTAAGTCTCGAAGGCATTTGAGCGAGTAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATCCGGGCTAAGTCCCGAAGG
24321222 TACTTGGTTT
Statistics
Matches: 124, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.14
80 102 0.82
81 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:24328520 original size:46 final size:46
Alignment explanation
Indices: 24328356--24328529 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
24328346 ATTTGGGCAT
*
24328356 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * *
24328401 TCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
24328446 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
24328494 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24328530 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.02
42 4 0.04
44 3 0.03
45 27 0.25
46 35 0.32
47 27 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:24334449 original size:16 final size:16
Alignment explanation
Indices: 24334428--24334459 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24334418 TTGCAATTCA
*
24334428 ATAGGCTTACACTTTG
1 ATAGGCTCACACTTTG
24334444 ATAGGCTCACACTTTG
1 ATAGGCTCACACTTTG
24334460 CTTATTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (16 bp):
ATAGGCTCACACTTTG
Found at i:24334849 original size:25 final size:25
Alignment explanation
Indices: 24334784--24334877 Score: 89
Period size: 25 Copynumber: 3.7 Consensus size: 25
24334774 ACAAGGATCA
* * *
24334784 CACCACTTGCTGAGCTCGCAGCTCA
1 CACCACTTGTTGAGCTCGTAGCTCG
* * *
24334809 CACCCCTTATTGAGCTCATAGCTCG
1 CACCACTTGTTGAGCTCGTAGCTCG
* *
24334834 CACCACTTGTTAAGCTTGTAGCTCG
1 CACCACTTGTTGAGCTCGTAGCTCG
* *
24334859 CAACATCTTGCTGAGCTCG
1 CACCA-CTTGTTGAGCTCG
24334878 CACCACTTGC
Statistics
Matches: 53, Mismatches: 15, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
25 43 0.81
26 10 0.19
ACGTcount: A:0.20, C:0.34, G:0.19, T:0.27
Consensus pattern (25 bp):
CACCACTTGTTGAGCTCGTAGCTCG
Found at i:24334888 original size:18 final size:19
Alignment explanation
Indices: 24334853--24334894 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
24334843 TTAAGCTTGT
*
24334853 AGCTCGCAACATCTTGCTG
1 AGCTCGCAACATCTTGCTA
*
24334872 AGCTCGCACCA-CTTGCTA
1 AGCTCGCAACATCTTGCTA
24334890 AGCTC
1 AGCTC
24334895 CCAGCTCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (19 bp):
AGCTCGCAACATCTTGCTA
Found at i:24334892 original size:44 final size:43
Alignment explanation
Indices: 24334828--24334923 Score: 129
Period size: 44 Copynumber: 2.2 Consensus size: 43
24334818 TTGAGCTCAT
* *** * *
24334828 AGCTCGCACCACTTGTTAAGCTTGTAGCTCGCAACATCTTGCTG
1 AGCTCGCACCACTTGCTAAGCTCCCAGCTCAC-ACATCTCGCTG
24334872 AGCTCGCACCACTTGCTAAGCTCCCAGCTCACACATCTCGCTG
1 AGCTCGCACCACTTGCTAAGCTCCCAGCTCACACATCTCGCTG
24334915 AGCTCGCAC
1 AGCTCGCAC
24334924 ATCTCGTTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 19 0.41
44 27 0.59
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (43 bp):
AGCTCGCACCACTTGCTAAGCTCCCAGCTCACACATCTCGCTG
Found at i:24334924 original size:18 final size:18
Alignment explanation
Indices: 24334897--24334938 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
24334887 CTAAGCTCCC
*
24334897 AGCTCACACATCTCGCTG
1 AGCTCGCACATCTCGCTG
*
24334915 AGCTCGCACATCTCGTTG
1 AGCTCGCACATCTCGCTG
24334933 AGCTCG
1 AGCTCG
24334939 TACCACTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.36, G:0.21, T:0.24
Consensus pattern (18 bp):
AGCTCGCACATCTCGCTG
Found at i:24340473 original size:5 final size:5
Alignment explanation
Indices: 24340465--24340489 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24340455 TATAATATAT
24340465 TTTCC TTTCC TTTCC TTTCC TTTCC
1 TTTCC TTTCC TTTCC TTTCC TTTCC
24340490 ACCACTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
TTTCC
Found at i:24342442 original size:43 final size:43
Alignment explanation
Indices: 24342381--24342468 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
24342371 CTACCTATAA
*
24342381 AAGTCATAACTCATAACCCTATTTCTATCAATTCTTTCTCATG
1 AAGTCATAACTCATAACCCTAATTCTATCAATTCTTTCTCATG
24342424 AAGTCATAACTCATAACCCTAATTCTATCAATTCTTTCTCATG
1 AAGTCATAACTCATAACCCTAATTCTATCAATTCTTTCTCATG
24342467 AA
1 AA
24342469 TGCTTCTCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.38
Consensus pattern (43 bp):
AAGTCATAACTCATAACCCTAATTCTATCAATTCTTTCTCATG
Found at i:24345588 original size:20 final size:20
Alignment explanation
Indices: 24345560--24345600 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
24345550 GCTTCGTAAT
*
24345560 ATATTAAAAAATTACTTAAA
1 ATATGAAAAAATTACTTAAA
**
24345580 ATATGAAAATGTTACTTAAA
1 ATATGAAAAAATTACTTAAA
24345600 A
1 A
24345601 CATATAAATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (20 bp):
ATATGAAAAAATTACTTAAA
Found at i:24348771 original size:40 final size:40
Alignment explanation
Indices: 24348715--24348884 Score: 279
Period size: 40 Copynumber: 4.2 Consensus size: 40
24348705 TATGTGCATA
* *
24348715 GCATTTGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAG
*
24348755 GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCTGAAG
1 GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAG
*
24348795 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAG
24348835 GCATTCGTGC-AGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGA-GTTATTATAACCGGGTTAAGTCCCGAAG
*
24348875 GCACTCGTGC
1 GCATTCGTGC
24348885 TGGTTGTTAC
Statistics
Matches: 122, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 122 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
GCATTCGTGCGAGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:24348913 original size:80 final size:80
Alignment explanation
Indices: 24348721--24348913 Score: 226
Period size: 80 Copynumber: 2.4 Consensus size: 80
24348711 CATAGCATTT
* * ** *
24348721 GTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTATAACCGGGTTAA
1 GTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGAGTTATTATAACCGGGTTAA
* *
24348786 GTCCTGAAGGCATTC
66 GTCCCGAAGGCACTC
* * ** *
24348801 GTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGC-AGGTTATTATAACCGGGTTA
1 GTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGA-GTTATTATAACCGGGTTA
24348865 AGTCCCGAAGGCACTC
65 AGTCCCGAAGGCACTC
* * * *
24348881 GTGCTGGTTGTTACATCCGAGCCAAATTCCGAA
1 GTGCGGGTTATTACAACCGAGCCAAATCCCGAA
24348914 AGTATTTATG
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
79 1 0.01
80 100 0.99
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
GTGCGGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGAGTTATTATAACCGGGTTAA
GTCCCGAAGGCACTC
Found at i:24352433 original size:46 final size:46
Alignment explanation
Indices: 24352366--24352774 Score: 584
Period size: 46 Copynumber: 8.9 Consensus size: 46
24352356 TTCTGAAATG
* *
24352366 AAATGTGTAAGACCATGGTTGAAAGACACCATGGAAACATGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* *
24352412 AAATGTTTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* *
24352458 AAATGTGTAAGACCATGGTTGAAAGATACCATGACAACAGGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
*
24352504 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
*
24352550 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGATATA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
***
24352596 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATGGG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
** * * * *
24352642 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCGTGACATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
** * *
24352688 AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* * * * *
24352734 AAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
24352775 TCAAAGATAA
Statistics
Matches: 330, Mismatches: 33, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 330 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
Found at i:24353076 original size:16 final size:17
Alignment explanation
Indices: 24353055--24353087 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24353045 ATGATGGAGC
24353055 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
24353071 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
24353088 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:24361991 original size:51 final size:46
Alignment explanation
Indices: 24361872--24361999 Score: 213
Period size: 46 Copynumber: 2.8 Consensus size: 46
24361862 TGTAACCCAC
* *
24361872 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
24361918 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
24361964 CCATAAGTGAACTC-AGACTCAACTCAACGAGCTCGG
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTCGG
24362000 AACTCAAATA
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 1 0.01
46 77 0.99
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:24367190 original size:37 final size:39
Alignment explanation
Indices: 24367135--24367277 Score: 127
Period size: 37 Copynumber: 3.8 Consensus size: 39
24367125 ATATATCCGT
* * * *
24367135 AGATTTCTCCTCGTTTGAGTTTCACTT-AGTATAATAGTA
1 AGATTTCTCCTCGATTGAGCTTCA-TTCAGTAAAACAGTA
24367174 AGATTT-T-CTCGATTGAGCTTCATTCAGTAAAACAGTA
1 AGATTTCTCCTCGATTGAGCTTCATTCAGTAAAACAGTA
** * * * *
24367211 AGA--TCTGATCGATTGAGCTTTATTTAGTACAACGGTA
1 AGATTTCTCCTCGATTGAGCTTCATTCAGTAAAACAGTA
**
24367248 AGATTTGACC-CGATTGAGCTTCATTCAGTA
1 AGATTTCTCCTCGATTGAGCTTCATTCAGTA
24367278 GGACCAATAG
Statistics
Matches: 84, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
35 1 0.01
36 3 0.04
37 54 0.64
38 19 0.23
39 7 0.08
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (39 bp):
AGATTTCTCCTCGATTGAGCTTCATTCAGTAAAACAGTA
Found at i:24368126 original size:22 final size:23
Alignment explanation
Indices: 24368097--24368152 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
24368087 TTTCAACTTT
* *
24368097 CTTAATTAAGCTTTAA-TAAATCA
1 CTTAATTAAGC-CTAATTAAACCA
24368120 -TTAATTAAGCCTAATTAAACCA
1 CTTAATTAAGCCTAATTAAACCA
24368142 CTTAATTAAGC
1 CTTAATTAAGC
24368153 ATAACCTCGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.10
22 16 0.55
23 10 0.34
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (23 bp):
CTTAATTAAGCCTAATTAAACCA
Found at i:24372789 original size:21 final size:20
Alignment explanation
Indices: 24372754--24372801 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
24372744 CATGTATTAG
*
24372754 ATATTAAATAGATATTTATT
1 ATATTAAAAAGATATTTATT
24372774 ATATTATAAAAGATATTTATT
1 ATATTA-AAAAGATATTTATT
24372795 A-ATTAAA
1 ATATTAAA
24372802 TAATTATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 2 0.08
20 10 0.38
21 14 0.54
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
ATATTAAAAAGATATTTATT
Found at i:24374977 original size:46 final size:46
Alignment explanation
Indices: 24374925--24375023 Score: 198
Period size: 46 Copynumber: 2.2 Consensus size: 46
24374915 AGTGTGCTCT
24374925 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
24374971 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
24375017 CTGATAT
1 CTGATAT
24375024 ATGGTTGAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 53 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.25
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:24375031 original size:31 final size:31
Alignment explanation
Indices: 24374993--24375054 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
24374983 GTGTAAGACC
*
24374993 ATGGTTGAAAGATACCATGGCAACCTGATAT
1 ATGGTTGAAAGATACCATGGCAACCTAATAT
24375024 ATGGTTGAAAGATACCATGGCAACCTAATAT
1 ATGGTTGAAAGATACCATGGCAACCTAATAT
24375055 GAAATGTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (31 bp):
ATGGTTGAAAGATACCATGGCAACCTAATAT
Found at i:24375074 original size:77 final size:77
Alignment explanation
Indices: 24374947--24375100 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
24374937 GTGTAAGACC
* *
24374947 ATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATG
1 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATA
*
24375012 GCAACCTGATAT
66 GCAACATGATAT
24375024 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATA
1 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATA
24375089 GCAACATGATAT
66 GCAACATGATAT
24375101 GAAATGTGTA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (77 bp):
ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATA
GCAACATGATAT
Found at i:24375076 original size:46 final size:46
Alignment explanation
Indices: 24375024--24375312 Score: 321
Period size: 46 Copynumber: 6.3 Consensus size: 46
24375014 AACCTGATAT
* * **
24375024 ATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACC
1 ATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACC
* ** *
24375070 ATGGTTGAAAGATACCATAGCAACATGATATGAAATGTGTAGGACC
1 ATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACC
* *
24375116 ATGGTTGAAAGATACCATGGCAACATGATA-GAAAACGAATAAGACT
1 ATGGTTGAAAGATACCATGGCAACATGATATG-AAATGAATAAGACC
* * *
24375162 ATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACC
1 ATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACC
* * *** *
24375208 ATGGTTGAAGGATACCGTGGCAACATGACGGGAAAATGAATAAGAAC
1 ATGGTTGAAAGATACCATGGCAACATGATATG-AAATGAATAAGACC
* * * *
24375255 ATGGTTGAAAGATACCGTGGCAACATGACA-GAAAATGAGTAAGATC
1 ATGGTTGAAAGATACCATGGCAACATGATATG-AAATGAATAAGACC
*
24375301 ATAGTTGAAAGA
1 ATGGTTGAAAGA
24375313 CACAAAGATA
Statistics
Matches: 213, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.00
46 170 0.80
47 42 0.20
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACC
Found at i:24375205 original size:138 final size:138
Alignment explanation
Indices: 24375022--24375312 Score: 368
Period size: 138 Copynumber: 2.1 Consensus size: 138
24375012 GCAACCTGAT
* **
24375022 ATATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCA
1 ATATGGTTGAAAGATACCATGGCAACCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCA
* * ** * * *
24375087 TAGCAACATGATATG-AAATGTGTAGGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAA
66 TAGCAACATGACAGGAAAATGAATAAGAACATGGTTGAAAGATACCATGGCAACATGACAGAAAA
24375151 CGAATAAG
131 CGAATAAG
* * * *
24375159 ACTATGGTTGAAAGATACCATGGCAGCGTGACATGAAATGAATAAGACCATGGTTGAAGGATACC
1 A-TATGGTTGAAAGATACCATGGCAACCTAACATGAAATGAATAAGACCATGGTTGAAAGATACC
* * * *
24375224 GTGGCAACATGACGGGAAAATGAATAAGAACATGGTTGAAAGATACCGTGGCAACATGACAGAAA
65 ATAGCAACATGACAGGAAAATGAATAAGAACATGGTTGAAAGATACCATGGCAACATGACAGAAA
* *
24375289 ATGAGTAAG
130 ACGAATAAG
*
24375298 ATCATAGTTGAAAGA
1 AT-ATGGTTGAAAGA
24375313 CACAAAGATA
Statistics
Matches: 130, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
137 1 0.01
138 68 0.52
139 61 0.47
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (138 bp):
ATATGGTTGAAAGATACCATGGCAACCTAACATGAAATGAATAAGACCATGGTTGAAAGATACCA
TAGCAACATGACAGGAAAATGAATAAGAACATGGTTGAAAGATACCATGGCAACATGACAGAAAA
CGAATAAG
Found at i:24376318 original size:26 final size:26
Alignment explanation
Indices: 24376282--24376391 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
24376272 TGATACAAAT
24376282 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
24376308 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
24376334 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
24376360 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
24376386 TGATAA
1 TGATAA
24376392 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:24379568 original size:31 final size:31
Alignment explanation
Indices: 24379493--24379577 Score: 73
Period size: 31 Copynumber: 2.7 Consensus size: 31
24379483 GGTAACTATA
* * *
24379493 TTATCAGGTACT-TTGTATCGGTGTTCATGTT
1 TTATCAGGTACTATT-TACCAGTGTTCATATT
* * * *
24379524 GTATCAAGCACTATTTACCAGTGTTTATATT
1 TTATCAGGTACTATTTACCAGTGTTCATATT
* *
24379555 TTATCAGGTACTATGTACTAGTG
1 TTATCAGGTACTATTTACCAGTG
24379578 GCTAAGATCT
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
31 39 0.95
32 2 0.05
ACGTcount: A:0.24, C:0.14, G:0.19, T:0.44
Consensus pattern (31 bp):
TTATCAGGTACTATTTACCAGTGTTCATATT
Found at i:24382692 original size:40 final size:40
Alignment explanation
Indices: 24382584--24382793 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24382574 CGGGATTTAA
* * * * *
24382584 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
24382624 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24382664 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24382704 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24382744 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
24382784 CCGGATATAT
1 CCGGATATAT
24382794 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:24397620 original size:40 final size:39
Alignment explanation
Indices: 24397535--24397685 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 39
24397525 AATTGAATGA
* * * *
24397535 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTGGAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-AGACA-TAC
* *
24397575 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-A--GACATAC
*
24397616 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCAGACATAC
*
24397654 TATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCA
24397686 CATGGTTATA
Statistics
Matches: 93, Mismatches: 10, Indels: 17
0.77 0.08 0.14
Matches are distributed among these distances:
37 2 0.02
38 2 0.02
39 31 0.33
40 56 0.60
41 1 0.01
42 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAGACATAC
Found at i:24399811 original size:48 final size:48
Alignment explanation
Indices: 24399717--24399820 Score: 122
Period size: 48 Copynumber: 2.2 Consensus size: 48
24399707 TGTGCTAAGC
* * *
24399717 GTAAGACCTATCTGGGATAGGCATCGGCACAGCCCAGTGAGTGCTAGT
1 GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
**
24399765 GTAAGACCTATC-GGGAATAGGCATCAGCAC-GGGCAGAGCAGAGCTAGT
1 GTAAGACCTATCTGGG-ATAGGCATCAGCACAGCCCAGAG-AGAGCTAGT
*
24399813 ATAAGACC
1 GTAAGACC
24399821 ATAGTTGGAC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
47 8 0.17
48 40 0.83
ACGTcount: A:0.30, C:0.22, G:0.31, T:0.17
Consensus pattern (48 bp):
GTAAGACCTATCTGGGATAGGCATCAGCACAGCCCAGAGAGAGCTAGT
Found at i:24403496 original size:38 final size:38
Alignment explanation
Indices: 24403421--24403528 Score: 126
Period size: 38 Copynumber: 2.8 Consensus size: 38
24403411 GGCTTAAAGA
** * * *
24403421 CCCGCAGGCTTCGTGCTGGTAAAATGTTCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
*
24403459 CCCGCAGGCTTCGTGCTGGTATTATATCCTGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * * *
24403497 CCCGCGGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
24403529 CCTTCGTGCC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:24403731 original size:43 final size:43
Alignment explanation
Indices: 24403521--24403718 Score: 333
Period size: 43 Copynumber: 4.6 Consensus size: 43
24403511 GCTGGTATTA
*
24403521 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
24403564 TATTCGGGCCTTCGTACCTAGTAGGCTTCGCGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
24403607 TATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCTGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
24403650 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
24403693 TATTCGGGCCTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
24403719 GTAATGTCGG
Statistics
Matches: 142, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 142 1.00
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:24409474 original size:27 final size:27
Alignment explanation
Indices: 24409443--24409650 Score: 283
Period size: 27 Copynumber: 7.7 Consensus size: 27
24409433 TTAGTTTACC
24409443 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
24409470 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
24409497 AAATCACCAAAATGCCACTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
24409524 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
24409551 AAATTACCAAAA-ACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
24409577 AAATTATCAAAATACCCTTGGTTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTA
24409604 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
24409631 AAATTACTAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
24409651 TAGGGTAGAA
Statistics
Matches: 153, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 22 0.14
27 131 0.86
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:24409518 original size:54 final size:54
Alignment explanation
Indices: 24409443--24409647 Score: 333
Period size: 54 Copynumber: 3.8 Consensus size: 54
24409433 TTAGTTTACC
*
24409443 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAAA
* * * * *
24409497 AAATCACCAAAATGCCACTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAAA
24409551 AAATTACCAAAA-ACCCCTGGTTTGTAAAATTA-TCAAAATACCCTTGGTTTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGGTTTAAA
24409604 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
24409648 CTGTAGGGTA
Statistics
Matches: 138, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
53 48 0.35
54 89 0.64
55 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAAA
Found at i:24409625 original size:107 final size:108
Alignment explanation
Indices: 24409436--24409647 Score: 347
Period size: 107 Copynumber: 2.0 Consensus size: 108
24409426 GAATGCTTTA
* *
24409436 GTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAAAAAAT
*
24409501 CACCAAAATGCCACTGGTTTGTAAAATTACCAAAATACCCTTG
66 CACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTTG
24409544 GTTTACAAAATTACCAAAA-ACCCCTGGTTTGTAAAATTA-TCAAAATACCCTTGGTTTAAAAAA
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAAATACCCTTGGTTTAAAAAA
* * *
24409607 TTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
65 TCACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCC
24409648 CTGTAGGGTA
Statistics
Matches: 97, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
106 1 0.01
107 78 0.80
108 18 0.19
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (108 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTAAAAAAT
CACCAAAATACCACTGGTTTGTAAAATTACCAAAATACCCTTG
Found at i:24409662 original size:27 final size:27
Alignment explanation
Indices: 24409605--24409773 Score: 187
Period size: 27 Copynumber: 6.3 Consensus size: 27
24409595 TGGTTTAAAA
* ** *
24409605 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
**
24409632 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24409659 AATTACCGAAATACTCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
24409686 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
24409713 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
24409740 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
24409767 AATTACC
1 AATTACC
24409774 ATTTTACCCC
Statistics
Matches: 121, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.02
27 119 0.98
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:24409700 original size:81 final size:80
Alignment explanation
Indices: 24409603--24409774 Score: 220
Period size: 81 Copynumber: 2.1 Consensus size: 80
24409593 CTTGGTTTAA
** *
24409603 AAAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCCTGTAGGGTAGAATTACCG
1 AAAA-TACCAAAATACCCCT-GTAGGGTAAAATTACTAAAATACCCCTATAGGGTAGAATTACCG
*
24409667 AAATACTCTTGTAGGGT
64 AAATACCCTTGTAGGGT
* * *
24409684 AGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCGA
1 A-AAATACCAAAATACCCCTGTAGGGTAAAATTACTAAAATACCCCTATAGGGTAGAATTACCGA
* *
24409749 GATACCCTTGTGGGGT
65 AATACCCTTGTAGGGT
24409765 AAAATTACCA
1 AAAA-TACCA
24409775 TTTTACCCCT
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.06
81 70 0.90
82 3 0.04
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.26
Consensus pattern (80 bp):
AAAATACCAAAATACCCCTGTAGGGTAAAATTACTAAAATACCCCTATAGGGTAGAATTACCGAA
ATACCCTTGTAGGGT
Found at i:24410219 original size:6 final size:6
Alignment explanation
Indices: 24410188--24410306 Score: 84
Period size: 6 Copynumber: 19.3 Consensus size: 6
24410178 TTGTATTCAC
* * *
24410188 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTTTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
24410236 ATCACTTG ATACTG ATTCTG ATTCTG ATTCT- ATCACTTG ATTTTG ATTCTG
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG
24410287 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
24410307 GATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 22
0.73 0.10 0.18
Matches are distributed among these distances:
5 7 0.08
6 70 0.78
7 8 0.09
8 5 0.06
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:24410282 original size:37 final size:31
Alignment explanation
Indices: 24410188--24410298 Score: 159
Period size: 31 Copynumber: 3.6 Consensus size: 31
24410178 TTGTATTCAC
* * * *
24410188 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACTTGATACTG
*
24410219 ATTTTGATTCTGATTCTATCACTTGATACTG
1 ATTCTGATTCTGATTCTATCACTTGATACTG
**
24410250 ATTCTGATTCTGATTCTATCACTTGATTTTG
1 ATTCTGATTCTGATTCTATCACTTGATACTG
24410281 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
24410299 GTTCTGATGA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACTTGATACTG
Found at i:24410290 original size:25 final size:25
Alignment explanation
Indices: 24410192--24410291 Score: 98
Period size: 25 Copynumber: 3.8 Consensus size: 25
24410182 ATTCACATTC
24410192 TGATTTTGATTCTG-TTACCTGAT-AC-
1 TGATTTTGATTCTGATT--CT-ATCACT
24410217 TGATTTTGATTCTGATTCTATCACT
1 TGATTTTGATTCTGATTCTATCACT
24410242 TGATACTGATTCTGATTCTGATTCTATCACT
1 TG--A-T--TT-TGATTCTGATTCTATCACT
24410273 TGATTTTGATTCTGATTCT
1 TGATTTTGATTCTGATTCT
24410292 GATTCTAGTT
Statistics
Matches: 66, Mismatches: 0, Indels: 18
0.79 0.00 0.21
Matches are distributed among these distances:
23 2 0.03
24 4 0.06
25 29 0.44
26 4 0.06
27 1 0.02
28 2 0.03
29 1 0.02
30 2 0.03
31 21 0.32
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (25 bp):
TGATTTTGATTCTGATTCTATCACT
Found at i:24418645 original size:42 final size:42
Alignment explanation
Indices: 24418569--24418652 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
24418559 TATGTATATA
**
24418569 TATATATATAGCCAAAGCTATTCCGATTCACACACTAAGTGC
1 TATATATATAGCCAAAGCTATTCCGAAACACACACTAAGTGC
*
24418611 TATATATATAGCCAAAGCTA-TCTCGAAACGCACACTAAGTGC
1 TATATATATAGCCAAAGCTATTC-CGAAACACACACTAAGTGC
24418653 CAAACATAGT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 2 0.05
42 36 0.95
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (42 bp):
TATATATATAGCCAAAGCTATTCCGAAACACACACTAAGTGC
Found at i:24423596 original size:13 final size:13
Alignment explanation
Indices: 24423578--24423602 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24423568 CAATTTAGTG
24423578 TCACACGACCGTA
1 TCACACGACCGTA
24423591 TCACACGACCGT
1 TCACACGACCGT
24423603 GTGGCTAGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.16, T:0.16
Consensus pattern (13 bp):
TCACACGACCGTA
Found at i:24437586 original size:28 final size:27
Alignment explanation
Indices: 24437518--24437589 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
24437508 ATATAGTGAG
*
24437518 TTCGCACACTTAGTGCTATATAATCAG
1 TTCGCACACTTAGTGCTATATAATCAA
* *
24437545 CTCGCACACATAGTGCTATATAATCAAA
1 TTCGCACACTTAGTGCTATATAATC-AA
24437573 TTCGCACACTTAGTGCT
1 TTCGCACACTTAGTGCT
24437590 GTACAAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (27 bp):
TTCGCACACTTAGTGCTATATAATCAA
Found at i:24437666 original size:42 final size:42
Alignment explanation
Indices: 24437598--24437704 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
24437588 CTGTACAAAT
*
24437598 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
*
24437640 TTTATACCTGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
24437682 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
24437705 GAAATCAACA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.22, C:0.33, G:0.14, T:0.31
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:24445667 original size:28 final size:27
Alignment explanation
Indices: 24445599--24445670 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
24445589 ATATAGTGAG
*
24445599 TTCGCACACTTAGTGCTATATAATCAG
1 TTCGCACACTTAGTGCTATATAATCAA
* *
24445626 CTCGCACACATAGTGCTATATAATCAAA
1 TTCGCACACTTAGTGCTATATAATC-AA
24445654 TTCGCACACTTAGTGCT
1 TTCGCACACTTAGTGCT
24445671 GTACAAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.31
Consensus pattern (27 bp):
TTCGCACACTTAGTGCTATATAATCAA
Found at i:24445747 original size:42 final size:42
Alignment explanation
Indices: 24445679--24445785 Score: 187
Period size: 42 Copynumber: 2.5 Consensus size: 42
24445669 CTGTACAAAT
* *
24445679 TTTAAACCCGCACATTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
*
24445721 TTTATACCTGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
24445763 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
24445786 GAAATCAACA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.22, C:0.32, G:0.14, T:0.32
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:24446198 original size:2 final size:2
Alignment explanation
Indices: 24446191--24446232 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
24446181 CATACTCATG
*
24446191 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24446233 CACACATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24451661 original size:28 final size:28
Alignment explanation
Indices: 24451621--24451678 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
24451611 CGGCCCAGAC
*
24451621 TAGTTCTGAATTCTTTCTGTTTACTAAT
1 TAGTTATGAATTCTTTCTGTTTACTAAT
24451649 TAGTTATGAATTCTTTCTGTTTACTAAT
1 TAGTTATGAATTCTTTCTGTTTACTAAT
24451677 TA
1 TA
24451679 TTTTAATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.53
Consensus pattern (28 bp):
TAGTTATGAATTCTTTCTGTTTACTAAT
Found at i:24456670 original size:39 final size:39
Alignment explanation
Indices: 24456609--24456789 Score: 290
Period size: 39 Copynumber: 4.6 Consensus size: 39
24456599 GTTCAAACGT
*
24456609 CTTCGGGACTTAACCCGGATATCACAATTTGCACAATTGC
1 CTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATTGC
* * *
24456649 CTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTGC
1 CTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGC
*
24456688 CTTCGGGCTTAGCCCGGGTATCACAATTTGCACAATTGC
1 CTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGC
* *
24456727 CTTCAGGCTTAGCCCGGGTATCACAATTTGCACAATTGC
1 CTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGC
24456766 CTTCGGGCTTAGCCCGGATATCAC
1 CTTCGGGCTTAGCCCGGATATCAC
24456790 TCGAACATTC
Statistics
Matches: 130, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 123 0.95
40 7 0.05
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (39 bp):
CTTCGGGCTTAGCCCGGATATCACAATTTGCACAATTGC
Found at i:24460060 original size:21 final size:19
Alignment explanation
Indices: 24460022--24460061 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
24460012 AAATAGAAAC
24460022 AAAACAAAAAATTTCAAAA
1 AAAACAAAAAATTTCAAAA
*
24460041 AAAACTAACAAATATTCAAAA
1 AAAAC-AAAAAAT-TTCAAAA
24460062 TAGGGGTCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAACAAAAAATTTCAAAA
Found at i:24461237 original size:20 final size:20
Alignment explanation
Indices: 24461190--24461256 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
24461180 ACACCATACT
*
24461190 AGAGGCATCATAGATGCATAAC
1 AGAGGCATCAAAG-TGCA-AAC
*
24461212 AAAGGCATCAAAGTGCAAAC
1 AGAGGCATCAAAGTGCAAAC
*
24461232 AGAGGCA-CAAATGTGCAAGC
1 AGAGGCATCAAA-GTGCAAAC
24461252 AGAGG
1 AGAGG
24461257 AACTTAGTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.10
20 21 0.52
21 4 0.10
22 11 0.28
ACGTcount: A:0.43, C:0.18, G:0.27, T:0.12
Consensus pattern (20 bp):
AGAGGCATCAAAGTGCAAAC
Found at i:24471152 original size:40 final size:39
Alignment explanation
Indices: 24471107--24471236 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
24471097 CGGAATACAA
24471107 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
24471147 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
24471187 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
24471227 CCGGATATAA
1 CCGGATATAA
24471237 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:24482314 original size:43 final size:43
Alignment explanation
Indices: 24482265--24482590 Score: 354
Period size: 43 Copynumber: 7.6 Consensus size: 43
24482255 ATGTGTACAA
* **
24482265 GTAAGACCACGTCTAGGATATTGGCATCGATATGTGATTACGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * * * *
24482308 GCAAGACCATGTTTGGGATGTTGGCATTGATATGTGATTACAT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
24482351 GTAAGACCACGTCTGAGACGTTGGCATTGATATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * *
24482394 GTAAGACCACGTTTGAGACGTTGGCATCGATATTTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * * * *
24482437 G-AAGACCATGTCTAGGACATTGGCATCGTTATGTGATTATGT
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
24482479 GTAAGACCACGTCTGGGACGTTGGCATCGATATATGTTTACGA
1 GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
* * *
24482522 GTAAGA-CACTATTTGGGACAG-T-GCATCGATATGTGATTACAT
1 GTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATGTGATTACGT
*
24482564 GTAAGACCACGTTTGGGACGTTGGCAT
1 GTAAGACCACGTCTGGGACGTTGGCAT
24482591 TGTACGATAT
Statistics
Matches: 238, Mismatches: 39, Indels: 12
0.82 0.13 0.04
Matches are distributed among these distances:
41 1 0.00
42 69 0.29
43 167 0.70
44 1 0.00
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (43 bp):
GTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACGT
Found at i:24482482 original size:85 final size:85
Alignment explanation
Indices: 24482267--24482590 Score: 368
Period size: 85 Copynumber: 3.8 Consensus size: 85
24482257 GTGTACAAGT
* * * *
24482267 AAGACCACGTCTAGGATATTGGCATCGATATGTGATTACGTGCAAGACCATGTTTGGGATGTTGG
1 AAGACCACGTCTAGGACATTGGCATCGATATGTGATTACGTGTAAGACCACGTTTGGGACGTTGG
* *
24482332 CATTGATATGTGATTACATGT-
66 CATCGATATATGATT--ATGTG
* * * *
24482353 AAGACCACGTCT-GAGACGTTGGCATTGATATGTGATTATGTGTAAGACCACGTTTGAGACGTTG
1 AAGACCACGTCTAG-GACATTGGCATCGATATGTGATTACGTGTAAGACCACGTTTGGGACGTTG
*
24482417 GCATCGATATTTGATTATGTG
65 GCATCGATATATGATTATGTG
* * * *
24482438 AAGACCATGTCTAGGACATTGGCATCGTTATGTGATTATGTGTAAGACCACGTCTGGGACGTTGG
1 AAGACCACGTCTAGGACATTGGCATCGATATGTGATTACGTGTAAGACCACGTTTGGGACGTTGG
* * *
24482503 CATCGATATATGTTTACGAG
66 CATCGATATATGATTATGTG
* * * * *
24482523 TAAGA-CACTATTTGGGACAGT-GCATCGATATGTGATTACATGTAAGACCACGTTTGGGACGTT
1 -AAGACCAC-GTCTAGGACATTGGCATCGATATGTGATTACGTGTAAGACCACGTTTGGGACGTT
24482586 GGCAT
64 GGCAT
24482591 TGTACGATAT
Statistics
Matches: 204, Mismatches: 29, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
84 4 0.02
85 119 0.58
86 81 0.40
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (85 bp):
AAGACCACGTCTAGGACATTGGCATCGATATGTGATTACGTGTAAGACCACGTTTGGGACGTTGG
CATCGATATATGATTATGTG
Found at i:24482570 original size:128 final size:129
Alignment explanation
Indices: 24482285--24482590 Score: 370
Period size: 128 Copynumber: 2.4 Consensus size: 129
24482275 GTCTAGGATA
* * * *
24482285 TTGGCATCGATATGTGATTACGTGCAAGACCATGTTTGGGATGTTGGCATTGATATGTGATTACA
1 TTGGCATCGATATGTGATTACATGTAAGACCATGTTTGGGACGTTGGCATCGATATGTGATTACA
* * * * *
24482350 TGTAAGACCACGTCTGAGACGTTGGCATTGATATGTGATTATGTGTAAGACCACGTTTGAGACG
66 TGTAAGACCACGTCTGAGACGTTGGCATCGATATATGATTACGAGTAAGACCACATTTGAGACG
* * * * * *
24482414 TTGGCATCGATATTTGATT--ATGTGAAGACCATGTCTAGGACATTGGCATCGTTATGTGATTAT
1 TTGGCATCGATATGTGATTACATGT-AAGACCATGTTTGGGACGTTGGCATCGATATGTGATTAC
* * * *
24482477 GTGTAAGACCACGTCTGGGACGTTGGCATCGATATATGTTTACGAGTAAGA-CACTATTTGGGAC
65 ATGTAAGACCACGTCTGAGACGTTGGCATCGATATATGATTACGAGTAAGACCAC-ATTTGAGAC
24482541 AG
129 -G
*
24482543 -T-GCATCGATATGTGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 TTGGCATCGATATGTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
24482591 TGTACGATAT
Statistics
Matches: 148, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
127 20 0.14
128 105 0.71
129 23 0.16
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (129 bp):
TTGGCATCGATATGTGATTACATGTAAGACCATGTTTGGGACGTTGGCATCGATATGTGATTACA
TGTAAGACCACGTCTGAGACGTTGGCATCGATATATGATTACGAGTAAGACCACATTTGAGACG
Found at i:24493863 original size:20 final size:20
Alignment explanation
Indices: 24493830--24493867 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24493820 ACTAATTGTG
*
24493830 CATGTTATGCTTAAATGTTT
1 CATGTGATGCTTAAATGTTT
*
24493850 CATGTGATGGTTAAATGT
1 CATGTGATGCTTAAATGT
24493868 GGTATATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.45
Consensus pattern (20 bp):
CATGTGATGCTTAAATGTTT
Found at i:24498484 original size:17 final size:17
Alignment explanation
Indices: 24498446--24498492 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
24498436 TTTATGTTCT
* *
24498446 TTTAATTTTATATATGA
1 TTTATTTTTATATATAA
24498463 TTTATTTTTAT-TATAA
1 TTTATTTTTATATATAA
*
24498479 TGTTATTATTATAT
1 T-TTATTTTTATAT
24498493 GGTAATGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 5 0.20
17 19 0.76
18 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTATTTTTATATATAA
Found at i:24499337 original size:29 final size:29
Alignment explanation
Indices: 24499295--24499496 Score: 244
Period size: 29 Copynumber: 6.9 Consensus size: 29
24499285 GATGCCCAAT
* *
24499295 GAATATAAAAAGGGATGATTTCGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
* *
24499324 GAATATGAAAAGGGGTGGTGAT-GACCATC
1 GAATATGAAAAGGGATGGT-TTCGACCATC
* **
24499353 GAATATGAAAAGGGATTGTGACGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
*
24499382 GAATATGAAAAGGGATGGTTTCAACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
* * *
24499411 GAATATGAAAAGGGATGGCTTCAATCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
24499440 GAATATGAAAAGGGATGGTTTCGACCATC
1 GAATATGAAAAGGGATGGTTTCGACCATC
* * * *
24499469 TATTAAAGAAAATGGATGGTTTCGACCA
1 GAAT-ATGAAAAGGGATGGTTTCGACCA
24499497 CCGTTTAGCA
Statistics
Matches: 149, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
29 127 0.85
30 22 0.15
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
GAATATGAAAAGGGATGGTTTCGACCATC
Found at i:24510820 original size:40 final size:40
Alignment explanation
Indices: 24510765--24510974 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24510755 AACATTGGAA
24510765 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24510805 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24510845 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
24510885 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
24510924 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
24510965 CTATATCCGG
1 ATATATCCGG
24510975 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:24518955 original size:40 final size:40
Alignment explanation
Indices: 24518900--24519109 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
24518890 AACATTGGAA
24518900 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24518940 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
24518980 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
24519020 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
24519059 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
24519100 CTATATCCGG
1 ATATATCCGG
24519110 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:24523687 original size:24 final size:25
Alignment explanation
Indices: 24523658--24523728 Score: 78
Period size: 24 Copynumber: 2.9 Consensus size: 25
24523648 TTGAGCTGAT
24523658 GAACAGTAAGCTCTATCAAGCTGGA
1 GAACAGTAAGCTCTATCAAGCTGGA
* *
24523683 -AACAGTAAGCTCTGA-CGAG-TTGA
1 GAACAGTAAGCTCT-ATCAAGCTGGA
24523706 GAACAGTAAGCTCT-TACAAGCTG
1 GAACAGTAAGCTCTAT-CAAGCTG
24523729 ATATATTGGT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
23 3 0.08
24 32 0.86
25 2 0.05
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (25 bp):
GAACAGTAAGCTCTATCAAGCTGGA
Found at i:24530095 original size:53 final size:54
Alignment explanation
Indices: 24530014--24530227 Score: 180
Period size: 53 Copynumber: 4.0 Consensus size: 54
24530004 TTTCCTTTTT
* * * *
24530014 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCTTTCCCTTAT-
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
* * * * * *
24530067 GAACTAACCAATGTCATGCCTTGGCATGGTCTTACATGGGACCTTTATCTTATA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
* * * * * ** * *
24530121 GTAACTCATCAATGTCA-CCTCTTGACATGTTCTTACATAATTTCCTTACCTTATA
1 G-AACTTACCAATGCCATGC-CTTGACATGGTCTTACATGGTATCTTTACCTTATA
* * * * *
24530176 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGTTATCCTTATCTTA
1 GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTA
24530228 CCAAATGCCA
Statistics
Matches: 126, Mismatches: 31, Indels: 7
0.77 0.19 0.04
Matches are distributed among these distances:
53 43 0.34
54 42 0.33
55 41 0.33
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (54 bp):
GAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTACCTTATA
Found at i:24530255 original size:47 final size:47
Alignment explanation
Indices: 24530200--24530321 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
24530190 CATGCCTTGG
*
24530200 CATGGTCTTACATGTTATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
* * *
24530247 CATGGTCTTAAATGGTATCCTTGTCTTACCAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
*
24530294 AATGGTCTTACATGGTATCCTTATCTTA
1 CATGGTCTTACATGGTATCCTTATCTTA
24530322 GTGGCAATGC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.38
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:24537275 original size:21 final size:21
Alignment explanation
Indices: 24537249--24537290 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
24537239 TATCGTGTCG
24537249 ATGTCACATCACTTTTACTAA
1 ATGTCACATCACTTTTACTAA
24537270 ATGTCACATCACTTTTACTAA
1 ATGTCACATCACTTTTACTAA
24537291 CGGAATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (21 bp):
ATGTCACATCACTTTTACTAA
Found at i:24540749 original size:18 final size:18
Alignment explanation
Indices: 24540726--24540761 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
24540716 GATAATAACA
24540726 TAACTTAGGGATTTCTAC
1 TAACTTAGGGATTTCTAC
24540744 TAACTTAGGGATTTCTAC
1 TAACTTAGGGATTTCTAC
24540762 AGATCAAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (18 bp):
TAACTTAGGGATTTCTAC
Found at i:24542792 original size:30 final size:30
Alignment explanation
Indices: 24542737--24542867 Score: 162
Period size: 30 Copynumber: 4.5 Consensus size: 30
24542727 ATAGTGAATC
* *
24542737 CGCACACTTAGTACTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
24542766 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
24542796 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
24542824 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
24542854 CGCACACTTAGTGC
1 CGCACACTTAGTGC
24542868 CAATCTTGTC
Statistics
Matches: 91, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 18 0.20
30 48 0.53
31 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:24542847 original size:58 final size:58
Alignment explanation
Indices: 24542736--24542867 Score: 167
Period size: 58 Copynumber: 2.3 Consensus size: 58
24542726 TATAGTGAAT
* * * * * *
24542736 CCGCACACTTAGTACTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
24542795 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
24542853 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
24542868 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.67
59 19 0.30
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:24549407 original size:46 final size:46
Alignment explanation
Indices: 24549320--24549407 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
24549310 ACATCTCATA
* * *
24549320 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTTGAG
1 GCCGACGCATGTCCCAAACATGTCTTACACTAGCCTACGTCTTGAG
* *
24549366 GCCGACGCATGTCCTAGACATGTCTTACACTAGCACT-CGTCT
1 GCCGACGCATGTCCCAAACATGTCTTACACTAGC-CTACGTCT
24549408 CAATGCAAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
46 35 0.97
47 1 0.03
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGACGCATGTCCCAAACATGTCTTACACTAGCCTACGTCTTGAG
Found at i:24557015 original size:46 final size:44
Alignment explanation
Indices: 24556926--24557083 Score: 140
Period size: 46 Copynumber: 3.4 Consensus size: 44
24556916 CATATCTGTG
*
24556926 CCGATGCCAAGTCCCAGACATGGTCTTACACTGACATATCTCGAAA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGACATATCTCGAAA
* * * **
24556972 CCGATAG-ATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAGG
1 CCGAT-GCATGTCCCAGACATGTCTTACACTGACATA--TCTCGAAA
*
24557018 CCGATGCATGTCCCAGACATGTCTTACACTAACACTCATCTC-AATA
1 CCGATGCATGTCCCAGACATGTCTTACACTGACA-T-ATCTCGAA-A
* *
24557064 CCAATGCCATGTCTCAGACA
1 CCGATG-CATGTCCCAGACA
24557084 CAATCTTACA
Statistics
Matches: 90, Mismatches: 14, Indels: 15
0.76 0.12 0.13
Matches are distributed among these distances:
44 14 0.16
45 13 0.14
46 48 0.53
47 14 0.16
48 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (44 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGACATATCTCGAAA
Done.