Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 83 of 433
Found at i:24561339 original size:2 final size:2
Alignment explanation
Indices: 24561295--24561331 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
24561285 ATGTTGATTG
24561295 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24561332 GCATATATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24566723 original size:43 final size:43
Alignment explanation
Indices: 24566575--24566725 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 43
24566565 TCTGAAATAT
** * *
24566575 CATGTAAGACCGTGTCTGGGACACAGGCTTTGAT-TTGAGATTTA
1 CATGTAAGACCACGTCTGGGACACAGGCATCGATATTGA-A-TTA
* * *
24566619 CGTGTAAGACCATGTCTGGGACATC-GGCATCG-TATTTG-ATTT
1 CATGTAAGACCACGTCTGGGACA-CAGGCATCGATA-TTGAATTA
* * *
24566661 CGTGTAAGACC-CTGTCTGGGATAGAGGCATCGATATTGAATTA
1 CATGTAAGACCAC-GTCTGGGACACAGGCATCGATATTGAATTA
24566704 CATGTAAGACCACGTCTGGGAC
1 CATGTAAGACCACGTCTGGGAC
24566726 GTTGGTATTG
Statistics
Matches: 88, Mismatches: 11, Indels: 17
0.76 0.09 0.15
Matches are distributed among these distances:
42 32 0.36
43 25 0.28
44 27 0.31
45 4 0.05
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACACAGGCATCGATATTGAATTA
Found at i:24567961 original size:48 final size:48
Alignment explanation
Indices: 24567889--24567986 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 48
24567879 CTATCTAGTA
*
24567889 ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGGGTATTAT
1 ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGAGTATTAT
* *
24567937 ATGCCTCATAACCTTAATTTTATGCCGGTTACGAGTTAGGAGTGTTAT
1 ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGAGTATTAT
24567985 AT
1 AT
24567987 TTTAATTGGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (48 bp):
ATGCCTCATAACCTTAATTCTATGCCGGTTACGAGTTAGGAGTATTAT
Found at i:24573272 original size:40 final size:40
Alignment explanation
Indices: 24573227--24573356 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
24573217 CGGAATACAA
24573227 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
* * *
24573267 CCGGATAGAACGACGCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
* * *
24573307 CCGGATGTAGCCAC-TAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACGT-GCACGAA-TGCCTTCGGGTCTTAGC
24573347 CCGGATATAA
1 CCGGATATAA
24573357 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.03
40 75 0.97
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
Found at i:24581369 original size:40 final size:39
Alignment explanation
Indices: 24581324--24581451 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
24581314 CGGAATACAA
24581324 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
24581364 CCGGATAGAACGAC-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
* * * *
24581402 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
24581442 CCGGATATAA
1 CCGGATATAA
24581452 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
38 33 0.44
39 2 0.03
40 40 0.53
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:24588372 original size:5 final size:5
Alignment explanation
Indices: 24588362--24588386 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
24588352 TATTGGGGTT
24588362 GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG
24588387 ATGAGCCATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:24596626 original size:44 final size:42
Alignment explanation
Indices: 24596578--24596687 Score: 107
Period size: 44 Copynumber: 2.5 Consensus size: 42
24596568 TTCGATTTGA
**
24596578 GATTTACGTGTAAGACCATGTCTGGGACATTCGGCATC-ATATCT
1 GATTTACGTGTAAGACCA-GTCTGGGACA-GAGGCATCGATAT-T
*
24596622 GATTT-TGTGTAAGACCCCAGTCTGGGACAGAGGCATCGATATT
1 GATTTACGTGTAAGA--CCAGTCTGGGACAGAGGCATCGATATT
* *
24596665 GAATTACATGTAAGACCACGTCT
1 GATTTACGTGTAAGACCA-GTCT
24596688 ACGACGTTGG
Statistics
Matches: 55, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
42 3 0.05
43 23 0.42
44 26 0.47
45 3 0.05
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (42 bp):
GATTTACGTGTAAGACCAGTCTGGGACAGAGGCATCGATATT
Found at i:24599389 original size:40 final size:40
Alignment explanation
Indices: 24599344--24599511 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
24599334 CGGAATATAA
24599344 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
24599384 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
24599424 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
24599464 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
24599504 CCGGATAT
1 CCGGATAT
24599512 CATTCAATTT
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 103 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24599494 original size:80 final size:80
Alignment explanation
Indices: 24599360--24599509 Score: 196
Period size: 80 Copynumber: 1.9 Consensus size: 80
24599350 ATAACCACGT
* *
24599360 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
24599425 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * ** * *
24599440 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
24599503 CCCGGAT
64 CCCGGAT
24599510 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
79 3 0.05
80 57 0.95
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:24607386 original size:40 final size:40
Alignment explanation
Indices: 24607341--24607508 Score: 167
Period size: 40 Copynumber: 4.2 Consensus size: 40
24607331 CGGAATATAA
*
24607341 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-AGCACAAATGCCTTCGGGTCTTAGC
* ** * *
24607381 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
24607421 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
24607461 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
24607501 CCGGATAT
1 CCGGATAT
24607509 CATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 104 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:24607491 original size:80 final size:80
Alignment explanation
Indices: 24607357--24607508 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
24607347 ATAACCATGT
* *
24607357 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
24607422 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
24607437 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
24607500 CCCGGATAT
64 CCCGGATAT
24607509 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:24610562 original size:27 final size:27
Alignment explanation
Indices: 24610531--24610632 Score: 150
Period size: 27 Copynumber: 3.8 Consensus size: 27
24610521 TAAGACCCCG
* *
24610531 ATTTGTAAAATTATTGAAATACCCCTG
1 ATTTGTAAAATTATCGAAATACCCCTA
* * *
24610558 ATTTGTAAAATTACCGAAACACCCTTA
1 ATTTGTAAAATTATCGAAATACCCCTA
*
24610585 ATTTGTAAAATTATCAAAATACCCCTA
1 ATTTGTAAAATTATCGAAATACCCCTA
24610612 ATTTGTAAAATTATCGAAATA
1 ATTTGTAAAATTATCGAAATA
24610633 TCCTCGGGTT
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 65 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (27 bp):
ATTTGTAAAATTATCGAAATACCCCTA
Found at i:24610683 original size:27 final size:27
Alignment explanation
Indices: 24610653--24610786 Score: 160
Period size: 27 Copynumber: 5.0 Consensus size: 27
24610643 ATAAATTATT
24610653 GTAATACCCCTGTAGGGTAAAATGACC
1 GTAATACCCCTGTAGGGTAAAATGACC
* * *
24610680 GTAATATCCCTGTAGGGTAAAATAACT
1 GTAATACCCCTGTAGGGTAAAATGACC
* * * *
24610707 GTAATGCTCCTGTAGAGTAAAATGACT
1 GTAATACCCCTGTAGGGTAAAATGACC
* *
24610734 GTAATGCCCCTGTATGGTAAAATGACC
1 GTAATACCCCTGTAGGGTAAAATGACC
* **
24610761 GTAATACCCCTATTTGGTAAAATGAC
1 GTAATACCCCTGTAGGGTAAAATGAC
24610787 AATTATGCCC
Statistics
Matches: 92, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (27 bp):
GTAATACCCCTGTAGGGTAAAATGACC
Found at i:24611136 original size:28 final size:27
Alignment explanation
Indices: 24611105--24611167 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
24611095 GTACTGATGT
* *
24611105 TGTATTGGGCTTAGGCCCACACTGTTAC
1 TGTATTGGGCTAAAGCCCACACTGTT-C
* *
24611133 TGTATAGGGCTAAAGCCCAGACTGTTC
1 TGTATTGGGCTAAAGCCCACACTGTTC
24611160 TGTTATTG
1 TG-TATTG
24611168 TATAGGGCTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 3 0.10
28 26 0.90
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (27 bp):
TGTATTGGGCTAAAGCCCACACTGTTC
Found at i:24611163 original size:33 final size:33
Alignment explanation
Indices: 24611126--24611224 Score: 135
Period size: 33 Copynumber: 3.0 Consensus size: 33
24611116 TAGGCCCACA
* *
24611126 CTGTTACTGTATAGGGCTAAAGCCCAGACTGTT
1 CTGTTATTGTATAGGGCTAAGGCCCAGACTGTT
* *
24611159 CTGTTATTGTATAGGGCTAAGGCCCAAACTGTA
1 CTGTTATTGTATAGGGCTAAGGCCCAGACTGTT
* * *
24611192 CTGATATTGGATAGGGCTCAGGCCCAGACTGTT
1 CTGTTATTGTATAGGGCTAAGGCCCAGACTGTT
24611225 ACTGCTTGCA
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (33 bp):
CTGTTATTGTATAGGGCTAAGGCCCAGACTGTT
Found at i:24616687 original size:13 final size:13
Alignment explanation
Indices: 24616655--24616683 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
24616645 ACAATATCTC
24616655 TTTTCTTTTTTTA
1 TTTTCTTTTTTTA
24616668 TTTTC-TTTTTTA
1 TTTTCTTTTTTTA
24616680 TTTT
1 TTTT
24616684 TCTTCTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTCTTTTTTTA
Found at i:24622048 original size:48 final size:48
Alignment explanation
Indices: 24621977--24622263 Score: 330
Period size: 48 Copynumber: 6.0 Consensus size: 48
24621967 TGACATTTGG
* * * *
24621977 ATGATATGTGTGCCAGTGTAAGACCGTGTTTGGGACATGGCATCGGCC
1 ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* * *
24622025 ATGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCG
1 ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* *
24622073 AT-ATTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGGCC
1 ATGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
*
24622121 AT-ATTATGAGAGCCAGTGTAAGATCATGTCTGGGACATGGCATCGG-C
1 ATGA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* * * *
24622168 ATTGAGATGAGAGCTAGTGTAAGACCATGCCTGGGACATGGCATCGACC
1 A-TGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
* * * * * *
24622217 -TCAACATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGGC
1 AT-GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
24622264 AATTCGCCCT
Statistics
Matches: 207, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
47 4 0.02
48 201 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
ATGATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCC
Found at i:24622159 original size:96 final size:96
Alignment explanation
Indices: 24621988--24622264 Score: 364
Period size: 96 Copynumber: 2.9 Consensus size: 96
24621978 TGATATGTGT
* * *
24621988 GCCAGTGTAAGACCGTGTTTGGGACATGGCATCGGCCATGATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCATATGAGAGCCAGTGTAAGACCATG
*
24622053 TTTGGAACATGGCATCGGCGATAT-TG-TGAGA
66 TTTGGAACATGGCATCGGC-AT-TGAGATGAGA
* *
24622084 GCCAGTGTAAGACCATGTCTGGGACATGGTATCGGCCAT-ATTATGAGAGCCAGTGTAAGATCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCA-TATGAGAGCCAGTGTAAGACCAT
* *
24622148 GTCTGGGACATGGCATCGGCATTGAGATGAGA
65 GTTTGGAACATGGCATCGGCATTGAGATGAGA
* * * * * *
24622180 GCTAGTGTAAGACCATGCCTGGGACATGGCATCGACC-TCAACATGTGAGCCAATGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATC-ATATGAGAGCCAGTGTAAGACCAT
24622244 GTTTGGAACATGGCATCGGCA
65 GTTTGGAACATGGCATCGGCA
24622265 ATTCGCCCTC
Statistics
Matches: 159, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
94 1 0.01
95 5 0.03
96 152 0.96
97 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATCATATGAGAGCCAGTGTAAGACCATG
TTTGGAACATGGCATCGGCATTGAGATGAGA
Found at i:24628401 original size:29 final size:30
Alignment explanation
Indices: 24628344--24628434 Score: 91
Period size: 29 Copynumber: 3.2 Consensus size: 30
24628334 ATGCATATAA
** *
24628344 CCCA-CTAGGCCCAA-TCTTATTCAAATGG
1 CCCATCTAGGCCCAATTCACATTCATATGG
* * *
24628372 CCCATCT-GGCCCAGTTCATATTCTTATGG
1 CCCATCTAGGCCCAATTCACATTCATATGG
*
24628401 CCCA-CTAGGCCCAATTCACCTTCATATGG
1 CCCATCTAGGCCCAATTCACATTCATATGG
24628430 CCCAT
1 CCCAT
24628435 TAAGCCAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
28 12 0.24
29 39 0.76
ACGTcount: A:0.23, C:0.35, G:0.14, T:0.27
Consensus pattern (30 bp):
CCCATCTAGGCCCAATTCACATTCATATGG
Found at i:24629808 original size:70 final size:71
Alignment explanation
Indices: 24629725--24629887 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
24629715 CGATTTGTCT
24629725 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24629789 CTTTCA
66 CTTTCA
*
24629795 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
24629860 CTTTCA
66 CTTTCA
24629866 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24629888 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:24629925 original size:71 final size:70
Alignment explanation
Indices: 24629725--24629921 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
24629715 CGATTTGTCT
* * * *
24629725 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24629789 CTTTCA
65 CTTTCA
* * * *
24629795 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24629860 CTTTCA
65 CTTTCA
* *
24629866 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24629922 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24637321 original size:71 final size:71
Alignment explanation
Indices: 24637237--24637400 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
24637227 CGATTTGTCT
24637237 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
24637302 CTTTCA
66 CTTTCA
* *
24637308 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
24637373 CTTTCA
66 CTTTCA
24637379 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
24637401 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.19, C:0.29, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
CTTTCA
Found at i:24637438 original size:71 final size:70
Alignment explanation
Indices: 24637237--24637434 Score: 249
Period size: 71 Copynumber: 2.8 Consensus size: 70
24637227 CGATTTGTCT
* * * * *
24637237 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCCAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24637302 CTTTCA
65 CTTTCA
* * * *
24637308 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
24637373 CTTTCA
65 CTTTCA
* *
24637379 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
24637435 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 94 0.80
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:24639824 original size:18 final size:19
Alignment explanation
Indices: 24639798--24639838 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
24639788 GGCCTCTCGG
24639798 CGGTAGCTG-ACCACC-CCT
1 CGGTAGCTGTA-CACCACCT
*
24639816 CGGTGGCTGTACACCACCT
1 CGGTAGCTGTACACCACCT
24639835 CGGT
1 CGGT
24639839 CCATGACTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.15, C:0.39, G:0.27, T:0.20
Consensus pattern (19 bp):
CGGTAGCTGTACACCACCT
Found at i:24643217 original size:48 final size:48
Alignment explanation
Indices: 24643157--24643432 Score: 306
Period size: 48 Copynumber: 5.8 Consensus size: 48
24643147 TGATATTTGT
* *
24643157 GCCAGTGTAAGACCCTGTTTGGGACATGGCATCGGCCATGATATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGA
* * * * * *
24643205 GCCAGTGTAAGACCATGTTTGGAAGATGGCATCGGCGATGTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGA
* * *
24643253 GCTAGTGTAAGACCATGTCTGGGACATGGTATCGGTCAT-ATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGA-TATGAGA
* *
24643301 GCCAGTGTAAGATCATGTCTGGGACATGGCATCGG-CATTGAGATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGA
* * * * * *
24643349 GCTAGTGTAAGACCATGCCTGGGACATGGCATCGACC-TCAACATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATGAGA
* * *
24643397 GCCAATGTAAGACCATGTTTGGAACATGGCATCGGC
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
24643433 AATTCTCCCT
Statistics
Matches: 191, Mismatches: 32, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
47 3 0.02
48 186 0.97
49 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGA
Found at i:24643330 original size:96 final size:95
Alignment explanation
Indices: 24643160--24643433 Score: 347
Period size: 96 Copynumber: 2.9 Consensus size: 95
24643150 TATTTGTGCC
* * *
24643160 AGTGTAAGACCCTGTTTGGGACATGGCATCGGCCATGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTCAT-ATATGAGAGCCAGTGTAAGACCATGTTT
* *
24643225 GGAAGATGGCATCGGCGA-TGTTG-TGAGAGCT
65 GGAACATGGCATCGGC-ATTG-AGATGAGAGCT
* * *
24643256 AGTGTAAGACCATGTCTGGGACATGGTATCGGTCATATTATGAGAGCCAGTGTAAGATCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTCATA-TATGAGAGCCAGTGTAAGACCATGTTT
*
24643321 GGGACATGGCATCGGCATTGAGATGAGAGCT
65 GGAACATGGCATCGGCATTGAGATGAGAGCT
* * * * *
24643352 AGTGTAAGACCATGCCTGGGACATGGCATCGACCTCA-ACATGTGAGCCAATGTAAGACCATGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCG--GTCATATATGAGAGCCAGTGTAAGACCATGTT
24643416 TGGAACATGGCATCGGCA
64 TGGAACATGGCATCGGCA
24643434 ATTCTCCCTC
Statistics
Matches: 155, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
95 3 0.02
96 148 0.95
97 1 0.01
98 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGTCATATATGAGAGCCAGTGTAAGACCATGTTTG
GAACATGGCATCGGCATTGAGATGAGAGCT
Found at i:24649568 original size:29 final size:30
Alignment explanation
Indices: 24649498--24649600 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 30
24649488 ACCTCTACAT
* *
24649498 ACATGCATATAGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
** * *
24649526 TTATTCAAATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* *
24649555 ATATTCTTATGGCCCA-CTAGGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
*
24649584 ACCTTCATATGGCCCAT
1 ACATTCATATGGCCCAT
24649601 TAAGCCAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 19 0.33
29 39 0.67
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:24650762 original size:18 final size:19
Alignment explanation
Indices: 24650736--24650776 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
24650726 GGCCTCTCGG
24650736 CGGTAGCTG-ACCACC-CCT
1 CGGTAGCTGTA-CACCACCT
*
24650754 CGGTTGCTGTACACCACCT
1 CGGTAGCTGTACACCACCT
24650773 CGGT
1 CGGT
24650777 CCATGACTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.15, C:0.39, G:0.24, T:0.22
Consensus pattern (19 bp):
CGGTAGCTGTACACCACCT
Found at i:24651327 original size:36 final size:36
Alignment explanation
Indices: 24651280--24651352 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
24651270 GATCATAAGG
24651280 TCCATTCCCAGCCACAGGTGAGGCCGGAGCCTCTTC
1 TCCATTCCCAGCCACAGGTGAGGCCGGAGCCTCTTC
*
24651316 TCCATTCCCAGCCATAGGTGAGGCCGGAGCCTCTTC
1 TCCATTCCCAGCCACAGGTGAGGCCGGAGCCTCTTC
24651352 T
1 T
24651353 ACTCCAACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.16, C:0.37, G:0.25, T:0.22
Consensus pattern (36 bp):
TCCATTCCCAGCCACAGGTGAGGCCGGAGCCTCTTC
Found at i:24654109 original size:40 final size:40
Alignment explanation
Indices: 24654052--24654258 Score: 276
Period size: 40 Copynumber: 5.2 Consensus size: 40
24654042 TGAATGATAC
* * *
24654052 CCGGGC-AAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
24654091 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
24654131 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
24654171 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
24654211 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTAGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
24654251 CC-GGCTAA
1 CCGGGCTAA
24654259 ATTCCGAAGA
Statistics
Matches: 149, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 11 0.07
40 136 0.91
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:24662201 original size:40 final size:40
Alignment explanation
Indices: 24662146--24662353 Score: 303
Period size: 40 Copynumber: 5.2 Consensus size: 40
24662136 TGAATGATAC
* * *
24662146 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
24662186 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
24662226 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
24662266 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
24662306 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
24662346 CC-GGCTAA
1 CCGGGCTAA
24662354 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 5 0.03
40 147 0.95
41 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:24669717 original size:40 final size:40
Alignment explanation
Indices: 24669662--24669828 Score: 214
Period size: 40 Copynumber: 4.2 Consensus size: 40
24669652 TGAATGATAC
* *
24669662 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATAT
* *
24669702 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* *
24669742 CCGGGCTAAGACCCGAAGGCATTTGTGC-AGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
* * * *
24669781 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
24669821 CC-GGCTAA
1 CCGGGCTAA
24669829 ATTCCGAAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
39 40 0.36
40 69 0.62
41 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGTTATAT
Found at i:24669818 original size:79 final size:80
Alignment explanation
Indices: 24669662--24669828 Score: 216
Period size: 79 Copynumber: 2.1 Consensus size: 80
24669652 TGAATGATAC
* * *
24669662 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATACCCGGGCTAAGACCCGAAGGCATTCG
*
24669727 TGCGAGTTGTTATAT
66 TGCGAGTGGTTATAT
* *
24669742 CCGGGCTAAGACCCGAAGGCATTTGTGC-AGTTG-CTATACCCGGGTTAAGACCCGAAGGCAATT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACTATACCCGGGCTAAGACCCGAAGGC-ATT
**
24669805 -GTGCTTGTGGTTATAT
64 CGTGCGAGTGGTTATAT
24669821 CC-GGCTAA
1 CCGGGCTAA
24669829 ATTCCGAAGA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
78 6 0.08
79 40 0.52
80 31 0.40
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACTATACCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTGGTTATAT
Found at i:24673296 original size:16 final size:16
Alignment explanation
Indices: 24673275--24673306 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24673265 AAGTTCAAGA
24673275 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
24673291 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
24673307 GCATTACATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:24677354 original size:2 final size:2
Alignment explanation
Indices: 24677347--24677377 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24677337 GATGTTTGGT
24677347 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24677378 TGAAAATTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24679272 original size:48 final size:48
Alignment explanation
Indices: 24679201--24679526 Score: 328
Period size: 48 Copynumber: 6.9 Consensus size: 48
24679191 GACGTTTGGG
* *
24679201 TGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* **
24679249 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * *
24679297 TGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGTATCGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * **
24679344 TTGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * *
24679393 -CATTATGAGAACTAGTGTAAGACCATGTTTGGGACATGGCATTGG-CA
1 TGA-TATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * * * *
24679440 TTGAGATGAGAGCTAGTGTAAGACCATGTTTGAGACATCGTCCTCGACC-
1 -TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACAT-GGCATCGGCCA
*
24679489 TG---TGAGA--CAGTGTAAGACCATGTTTGGAACATGGCATC
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATC
24679527 AGCAATTCAC
Statistics
Matches: 231, Mismatches: 40, Indels: 20
0.79 0.14 0.07
Matches are distributed among these distances:
42 4 0.02
43 22 0.10
45 5 0.02
47 4 0.02
48 188 0.81
49 7 0.03
50 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
Found at i:24679461 original size:144 final size:144
Alignment explanation
Indices: 24679201--24679477 Score: 380
Period size: 144 Copynumber: 1.9 Consensus size: 144
24679191 GACGTTTGGG
* * ** * *
24679201 TGATATGTGTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCCAGTG
1 TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCATCATATGAGAACCAGTG
* * *
24679266 TAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
66 TAAGACCATGTTTGGAACATGGCATCGGTCATGTAGTGAGAGCCAGTGTAAGACCATGTCTGAGA
24679331 CATGGTATCGGCAT
131 CATGGTATCGGCAT
*
24679345 TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCA-CATTATGAGAACTAGT
1 TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCATCA-TATGAGAACCAGT
* * * *
24679409 GTAAGACCATGTTTGGGACATGGCATTGG-CAT-TGAGATGAGAGCTAGTGTAAGACCATGTTTG
65 GTAAGACCATGTTTGGAACATGGCATCGGTCATGT-AG-TGAGAGCCAGTGTAAGACCATGTCTG
24679472 AGACAT
128 AGACAT
24679478 CGTCCTCGAC
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
142 1 0.01
143 4 0.03
144 111 0.96
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (144 bp):
TGATATGTGCGCCAGTGTAAAACCATGCCTGGGACATGGCATCGGCCATCATATGAGAACCAGTG
TAAGACCATGTTTGGAACATGGCATCGGTCATGTAGTGAGAGCCAGTGTAAGACCATGTCTGAGA
CATGGTATCGGCAT
Found at i:24689499 original size:25 final size:25
Alignment explanation
Indices: 24689445--24689499 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
24689435 TAATCATCTT
**
24689445 AATGTTGTTTAAATTAAATGTTTAC
1 AATGTTGTTTAAATTAAATGAATAC
* *
24689470 TATGTTGTTTTAATGTAAATGAAT-C
1 AATGTTGTTTAAAT-TAAATGAATAC
24689495 AATGT
1 AATGT
24689500 GACAGCCCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.47
Consensus pattern (25 bp):
AATGTTGTTTAAATTAAATGAATAC
Found at i:24691166 original size:29 final size:29
Alignment explanation
Indices: 24691131--24691204 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
24691121 GTTGTGAGAT
* *
24691131 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
24691160 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
24691189 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24691205 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:24694471 original size:38 final size:38
Alignment explanation
Indices: 24694339--24694504 Score: 165
Period size: 40 Copynumber: 4.2 Consensus size: 38
24694329 AAATTGAATG
* * * *
24694339 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATT
* *
24694379 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT---T
24694419 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATT
* * *
24694457 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTG--CGAGATT
24694497 ATATCCGG
1 ATATCCGG
24694505 TTATATTCCG
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
37 1 0.01
38 28 0.26
39 5 0.05
40 71 0.67
41 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (38 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATT
Found at i:24694479 original size:78 final size:79
Alignment explanation
Indices: 24694339--24694488 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 79
24694329 AAATTGAATG
* *
24694339 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCA
24694404 ATTGTGCTAGTGGCT
65 ATTGTGCTAGTGGCT
* * * *
24694419 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
*
24694482 TTTGTGC
65 ATTGTGC
24694489 ACGTGATTAT
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
78 34 0.55
79 3 0.05
80 25 0.40
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAGTGGCT
Found at i:24702385 original size:40 final size:40
Alignment explanation
Indices: 24702326--24702467 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
24702316 AAATTGAATG
* * *
24702326 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
24702366 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ** *
24702406 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
24702446 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
24702468 GCATTTGTGC
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:24702468 original size:40 final size:39
Alignment explanation
Indices: 24702365--24702493 Score: 152
Period size: 40 Copynumber: 3.2 Consensus size: 39
24702355 TGCTGGAAAT
* * *
24702365 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
24702405 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
24702445 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
24702485 TATATCCGG
1 TATATCCGG
24702494 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:24710460 original size:29 final size:29
Alignment explanation
Indices: 24710425--24710498 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
24710415 GTTGTGAGAT
* *
24710425 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
24710454 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
24710483 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24710499 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:24714998 original size:13 final size:13
Alignment explanation
Indices: 24714980--24715007 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
24714970 GCTCGGTAGG
24714980 GACACGCCCGTGT
1 GACACGCCCGTGT
24714993 GACACGCCCGTGT
1 GACACGCCCGTGT
24715006 GA
1 GA
24715008 ATCGTGCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:24720070 original size:24 final size:24
Alignment explanation
Indices: 24720043--24720117 Score: 72
Period size: 24 Copynumber: 3.4 Consensus size: 24
24720033 CGTTGAGTGG
24720043 TCCGAGTTCGTGATATAGGTGGCA
1 TCCGAGTTCGTGATATAGGTGGCA
* *
24720067 TCCGAGCTCGT--T-GA-GTGG--
1 TCCGAGTTCGTGATATAGGTGGCA
* *
24720085 TCCGGGTTCATGATATAGGTGGCA
1 TCCGAGTTCGTGATATAGGTGGCA
24720109 TCCGAGTTC
1 TCCGAGTTC
24720118 ATAATGGATG
Statistics
Matches: 38, Mismatches: 7, Indels: 12
0.67 0.12 0.21
Matches are distributed among these distances:
18 8 0.21
20 5 0.13
21 2 0.05
22 5 0.13
24 18 0.47
ACGTcount: A:0.17, C:0.20, G:0.33, T:0.29
Consensus pattern (24 bp):
TCCGAGTTCGTGATATAGGTGGCA
Found at i:24720099 original size:42 final size:42
Alignment explanation
Indices: 24720033--24720114 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
24720023 AGTCTGAACC
*
24720033 CGTTGAGTGGTCCGAGTTCGTGATATAGGTGGCATCCGAGCT
1 CGTTGAGTGGTCCGAGTTCATGATATAGGTGGCATCCGAGCT
*
24720075 CGTTGAGTGGTCCGGGTTCATGATATAGGTGGCATCCGAG
1 CGTTGAGTGGTCCGAGTTCATGATATAGGTGGCATCCGAG
24720115 TTCATAATGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.17, C:0.18, G:0.37, T:0.28
Consensus pattern (42 bp):
CGTTGAGTGGTCCGAGTTCATGATATAGGTGGCATCCGAGCT
Found at i:24724081 original size:16 final size:16
Alignment explanation
Indices: 24724060--24724091 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
24724050 CACTCAGAAA
24724060 GAGTTAAATCTTAGGT
1 GAGTTAAATCTTAGGT
24724076 GAGTTAAATCTTAGGT
1 GAGTTAAATCTTAGGT
24724092 AGCATAGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (16 bp):
GAGTTAAATCTTAGGT
Found at i:24727325 original size:20 final size:20
Alignment explanation
Indices: 24727300--24727337 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24727290 GTTTATTCGC
*
24727300 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
24727320 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
24727338 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:24735294 original size:20 final size:20
Alignment explanation
Indices: 24735269--24735306 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
24735259 GTTTATTCGC
*
24735269 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
24735289 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
24735307 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:24740730 original size:48 final size:46
Alignment explanation
Indices: 24740614--24740889 Score: 211
Period size: 46 Copynumber: 5.9 Consensus size: 46
24740604 ATATTAGGAG
* * * * *
24740614 ATATGTGAGCTAATGTAAGACATGTCAGAGACATGCATCAGCCACA
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGCCAAA
* *
24740660 ATATGAGAGCCAGTGTAAGACATGTCTGGGACATACATCAGCCTTAAA
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGCC--AAA
* * * *
24740708 ATATTTA-AGCCAATGTAAGACATGTC-AGGACATGCATCGGCCACA
1 ATA-TGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGCCAAA
* * * * *
24740753 ATATGAGAGCCAGTGTAAGACATGTTTGGGACATCCATCGACCTCGAA
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATC-AGC-CAAA
* * * *** *
24740801 ATATTTA-AACCAATGTAAGACATGTCTGGGACATGCACTGACGTTGAG
1 ATA-TGAGAGCCAATGTAAGACATGTCTGGGACATGCA-TCA-GCCAAA
* * *
24740849 ACA--AGAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCC
1 ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGCC
24740890 TTGAGATAGA
Statistics
Matches: 180, Mismatches: 39, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
44 3 0.02
45 25 0.14
46 74 0.41
47 14 0.08
48 59 0.33
49 5 0.03
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (46 bp):
ATATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCAGCCAAA
Found at i:24740785 original size:93 final size:93
Alignment explanation
Indices: 24740625--24740837 Score: 329
Period size: 93 Copynumber: 2.3 Consensus size: 93
24740615 TATGTGAGCT
24740625 AATGTAAGACATGTCAGAGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTGGG
1 AATGTAAGACATGTCAG-GACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTGGG
* *
24740690 ACATACATC-AGCCTTAAAATATTTAAGCC
65 ACATACATCGA-CCTCAAAATATTTAAACC
* *
24740719 AATGTAAGACATGTCAGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTTTGGGA
1 AATGTAAGACATGTCAGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTGGGA
* *
24740784 CATCCATCGACCTCGAAATATTTAAACC
66 CATACATCGACCTCAAAATATTTAAACC
*
24740812 AATGTAAGACATGTCTGGGACATGCA
1 AATGTAAGACATGTC-AGGACATGCA
24740838 CTGACGTTGA
Statistics
Matches: 110, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
93 83 0.75
94 27 0.25
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.23
Consensus pattern (93 bp):
AATGTAAGACATGTCAGGACATGCATCAGCCACAATATGAGAGCCAGTGTAAGACATGTCTGGGA
CATACATCGACCTCAAAATATTTAAACC
Found at i:24740873 original size:46 final size:48
Alignment explanation
Indices: 24740814--24740929 Score: 148
Period size: 46 Copynumber: 2.5 Consensus size: 48
24740804 TTTAAACCAA
* * *
24740814 TGTAAGACATGTCTGGGACATGCA-CTGACGTTGAGACA-A-GAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAG-CCTTGAGACAGACAAGCTAG
*
24740860 TGTAAGACATGTCTGGGACATGCATCAGCCTTGAGATAGACAAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCTTGAGACAGACAAGCTAG
* *
24740908 TGTAAGACCTGTCTAGGACATG
1 TGTAAGACATGTCTGGGACATG
24740930 GCGTCAGCTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
46 32 0.52
47 3 0.05
48 26 0.43
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (48 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCTTGAGACAGACAAGCTAG
Found at i:24740879 original size:94 final size:93
Alignment explanation
Indices: 24740625--24740890 Score: 295
Period size: 93 Copynumber: 2.8 Consensus size: 93
24740615 TATGTGAGCT
* **
24740625 AATGTAAGACATGTCAGAGACATGCATC-AGCCACAATATGAGAGCCAGTGTAAGACATGTCTGG
1 AATGTAAGACATGTCAG-GACATGCATCGA-CCACAAGACAAGAGCCAGTGTAAGACATGTCTGG
* *
24740689 GACATACATCAGCCTTAAAATATTTAAGCC
64 GACATACATCAGCCTCAAAATATTTAAACC
* * ** *
24740719 AATGTAAGACATGTCAGGACATGCATCGGCCACAATATGAGAGCCAGTGTAAGACATGTTTGGGA
1 AATGTAAGACATGTCAGGACATGCATCGACCACAAGACAAGAGCCAGTGTAAGACATGTCTGGGA
* *
24740784 CATCCATC-GACCTCGAAATATTTAAACC
66 CATACATCAG-CCTCAAAATATTTAAACC
* **** *
24740812 AATGTAAGACATGTCTGGGACATGCA-CTGACGTTGAGACAAGAGCTAGTGTAAGACATGTCTGG
1 AATGTAAGACATGTC-AGGACATGCATC-GACCACAAGACAAGAGCCAGTGTAAGACATGTCTGG
*
24740876 GACATGCATCAGCCT
64 GACATACATCAGCCT
24740891 TGAGATAGAC
Statistics
Matches: 149, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
92 1 0.01
93 83 0.56
94 64 0.43
95 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (93 bp):
AATGTAAGACATGTCAGGACATGCATCGACCACAAGACAAGAGCCAGTGTAAGACATGTCTGGGA
CATACATCAGCCTCAAAATATTTAAACC
Found at i:24741053 original size:49 final size:49
Alignment explanation
Indices: 24740858--24741081 Score: 148
Period size: 49 Copynumber: 4.7 Consensus size: 49
24740848 GACAAGAGCT
* * *
24740858 AGTGTAAGACATGTCTGGGACAT-GCATCAG--CC-TTGAGATAGACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGAT-AGAT-GA-AAGCC
* * ** * * *
24740906 AGTGTAAGACCTGTCTAGGACATGGCGTCAGC-TTG-TTG-TG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGATAGATGAAAGCC
* *
24740950 AGTGTAAGAACTGTCTGGGACATGGCATC-GACACCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAG-CACCGATAGATGAAAGCC
* *
24740999 AGTGTAAGACCTGTCTGGGACATGGCTTCAGC-CTC-ACTATATGAAAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCAC-CGA-TAGATGAAAGCC
* * *
24741048 GGTGTAAGACCATGTATGGGACATGGCGTCAGCA
1 AGTGTAAGACC-TGTCTGGGACATGGCATCAGCA
24741082 TCTTAATCCA
Statistics
Matches: 138, Mismatches: 24, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
43 1 0.01
44 28 0.20
45 1 0.01
46 2 0.01
47 3 0.02
48 24 0.17
49 58 0.42
50 21 0.15
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCACCGATAGATGAAAGCC
Found at i:24742838 original size:13 final size:13
Alignment explanation
Indices: 24742820--24742847 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
24742810 CTGGACTTCC
24742820 TCACACGGCCGTG
1 TCACACGGCCGTG
24742833 TCACACGGCCGTG
1 TCACACGGCCGTG
24742846 TC
1 TC
24742848 CCTTTGGCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.39, G:0.29, T:0.18
Consensus pattern (13 bp):
TCACACGGCCGTG
Found at i:24751439 original size:68 final size:67
Alignment explanation
Indices: 24751393--24751550 Score: 280
Period size: 68 Copynumber: 2.3 Consensus size: 67
24751383 ATACTATATA
24751393 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
24751458 AAT
65 AAT
24751461 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-GAGAGATA
24751526 AAT
65 AAT
* *
24751529 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
24751551 TCCAAGTGAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGGAGAGATAA
AT
Found at i:24751624 original size:66 final size:67
Alignment explanation
Indices: 24751427--24751624 Score: 192
Period size: 68 Copynumber: 2.9 Consensus size: 67
24751417 GGGATGTATC
* * *
24751427 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATA-C--GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
* *
24751489 TGTATC-
62 AGGA-CA
*
24751495 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
24751560 AGGACA
62 AGGACA
* *
24751566 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
24751625 TTCACCATGT
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
66 24 0.21
67 9 0.08
68 55 0.47
69 1 0.01
70 1 0.01
71 26 0.22
ACGTcount: A:0.33, C:0.16, G:0.30, T:0.21
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:24752985 original size:21 final size:21
Alignment explanation
Indices: 24752961--24753007 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
24752951 TGGTTCAACA
24752961 GGTAAGAAAAGGAAATGAAAT
1 GGTAAGAAAAGGAAATGAAAT
24752982 GGTAAGAAAAGGAAATGAAAT
1 GGTAAGAAAAGGAAATGAAAT
24753003 GGTAA
1 GGTAA
24753008 TTATTCAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.55, C:0.00, G:0.30, T:0.15
Consensus pattern (21 bp):
GGTAAGAAAAGGAAATGAAAT
Found at i:24755783 original size:80 final size:80
Alignment explanation
Indices: 24755699--24755847 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
24755689 TATGGTAACC
* * * *
24755699 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
24755763 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
24755779 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
24755844 CCGG
66 CCGG
24755848 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:24755789 original size:40 final size:38
Alignment explanation
Indices: 24755740--24755847 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
24755730 ATCACGATTT
*
24755740 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
24755780 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
24755820 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
24755848 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:24759380 original size:46 final size:46
Alignment explanation
Indices: 24759330--24759498 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
24759320 TTGAGCATCT
24759330 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
24759376 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* *
24759423 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
*
24759469 AGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTA
24759499 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 9, Indels: 18
0.80 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.54
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:24768726 original size:29 final size:29
Alignment explanation
Indices: 24768684--24768757 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 29
24768674 GTGACAAGAT
* * *
24768684 TGGCACTAAGTGTGCGAATTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATCACA
* *
24768713 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAACTTAAATCACA
24768742 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
24768758 TGATCGATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATCACA
Found at i:24772503 original size:25 final size:25
Alignment explanation
Indices: 24772405--24772530 Score: 107
Period size: 25 Copynumber: 5.0 Consensus size: 25
24772395 GAATAACAAC
* *
24772405 TCACCACAACAGG-TTTCCAGATAAT
1 TCACCACAA-AGGCTTTCCAAAGAAT
24772430 TCACCACAAAGGCTTTCCAAATG-AT
1 TCACCACAAAGGCTTTCCAAA-GAAT
* *
24772455 ACACCAC-AAGTGTTTTCCAAAGAAT
1 TCACCACAAAG-GCTTTCCAAAGAAT
* *
24772480 TTACCACAAAGGCTTTCCATAGAATT
1 TCACCACAAAGGCTTTCCAAAGAA-T
* * *
24772506 TC-CCATAAAGGTTTTCCAGAGAAT
1 TCACCACAAAGGCTTTCCAAAGAAT
24772530 T
1 T
24772531 ACAGTCTTGG
Statistics
Matches: 83, Mismatches: 12, Indels: 13
0.77 0.11 0.12
Matches are distributed among these distances:
24 9 0.11
25 69 0.83
26 5 0.06
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.27
Consensus pattern (25 bp):
TCACCACAAAGGCTTTCCAAAGAAT
Found at i:24773425 original size:85 final size:85
Alignment explanation
Indices: 24773277--24773442 Score: 242
Period size: 85 Copynumber: 2.0 Consensus size: 85
24773267 GTAGTAAATG
* * * * *
24773277 CTTAAAAGATCATAAGATTTCAATTAAAATCCCTATTACAAACATTTTACTAAAATTTTAACTAC
1 CTTAAAAGATCATAACATGTCAATCAAAATCCCCATTACAAACATTTTACTAAAATTTCAACTAC
*
24773342 ATGTGACCCCCATGCAACTA
66 ATGCGACCCCCATGCAACTA
* * * *
24773362 CTTAAAATATCATAACATGTCCATCACAATCCCCATTACAGACATTTTACTAAAATTTCAACTAC
1 CTTAAAAGATCATAACATGTCAATCAAAATCCCCATTACAAACATTTTACTAAAATTTCAACTAC
24773427 ATGCGACCCCCATGCA
66 ATGCGACCCCCATGCA
24773443 GGGCCTTCCT
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.39, C:0.25, G:0.06, T:0.30
Consensus pattern (85 bp):
CTTAAAAGATCATAACATGTCAATCAAAATCCCCATTACAAACATTTTACTAAAATTTCAACTAC
ATGCGACCCCCATGCAACTA
Found at i:24784840 original size:40 final size:40
Alignment explanation
Indices: 24784796--24784979 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
24784786 GCTACTCATT
*
24784796 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
24784836 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
24784876 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
24784914 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
24784955 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24784980 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:24784918 original size:78 final size:81
Alignment explanation
Indices: 24784798--24784979 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
24784788 TACTCATTCA
* *
24784798 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
24784861 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
24784877 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
24784940 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
24784956 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
24784980 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:24787953 original size:6 final size:6
Alignment explanation
Indices: 24787935--24788021 Score: 97
Period size: 6 Copynumber: 14.3 Consensus size: 6
24787925 AAGAAACATT
* *
24787935 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATCAAA ATCAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* *
24787983 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
24788022 GGGAACTGCA
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
5 3 0.04
6 62 0.89
7 4 0.06
8 1 0.01
ACGTcount: A:0.52, C:0.16, G:0.14, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:24788455 original size:27 final size:27
Alignment explanation
Indices: 24788425--24788580 Score: 208
Period size: 27 Copynumber: 5.9 Consensus size: 27
24788415 GGGGCAAAAT
* *
24788425 GGTAATTTTACCCTACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
24788452 GGTAATTCCACCCTAC-AGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
24788478 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
24788505 GGTAATTCTACCCTACAA-GGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
24788531 GGTAATTCTACCCTATAGGGGTATTCC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
24788558 GGTAATTCTACCCTACAGGGGTA
1 GGTAATTCTACCCTACAAGGGTA
24788581 ATTTTACAAA
Statistics
Matches: 115, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 45 0.39
27 70 0.61
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:24788490 original size:53 final size:52
Alignment explanation
Indices: 24788426--24788586 Score: 205
Period size: 53 Copynumber: 3.0 Consensus size: 52
24788416 GGGCAAAATG
* *
24788426 GTAATTTTACCCTACAAGGGTATCTCGGTAATTCCACCCTACAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTAT-TCGGTAATTCTACCCTACAGGGTATTTTA
* * **
24788479 GTAATTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAAGGTATTTCG
1 GTAATTCTACCCTACAAGGGTA-TTCGGTAATTCTACCCTACAGGGTATTTTA
* *
24788532 GTAATTCTACCCTATAGGGGTATTCCGGTAATTCTACCCTACAGGGGTAATTTTA
1 GTAATTCTACCCTACAAGGGTATT-CGGTAATTCTACCCTACA-GGGT-ATTTTA
24788587 CAAACCAGGG
Statistics
Matches: 92, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
52 2 0.02
53 82 0.89
54 4 0.04
55 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (52 bp):
GTAATTCTACCCTACAAGGGTATTCGGTAATTCTACCCTACAGGGTATTTTA
Found at i:24788650 original size:27 final size:27
Alignment explanation
Indices: 24788577--24788756 Score: 119
Period size: 27 Copynumber: 6.7 Consensus size: 27
24788567 ACCCTACAGG
**
24788577 GGTAATTTTACAAACC-AGGGTATTTT
1 GGTAATTTTGTAAACCGAGGGTATTTT
* ** **
24788603 GGTAATTTTATTGATTGAGGGTATTTT
1 GGTAATTTTGTAAACCGAGGGTATTTT
*
24788630 GGTAATTTTGTAAACCAAGGGTATTTT
1 GGTAATTTTGTAAACCGAGGGTATTTT
* * ***
24788657 AGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAACCGAGGGTATTTT
* * * ***
24788684 GGTAATTCTGTAAATCGAGGATAAAAT
1 GGTAATTTTGTAAACCGAGGGTATTTT
* * ****
24788711 GGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAACCGAGGGTATTTT
*
24788738 GGTAATTTTGTAAATCGAG
1 GGTAATTTTGTAAACCGAG
24788757 AGTAAAATGG
Statistics
Matches: 130, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
26 11 0.08
27 119 0.92
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (27 bp):
GGTAATTTTGTAAACCGAGGGTATTTT
Found at i:24788677 original size:54 final size:53
Alignment explanation
Indices: 24788577--24788751 Score: 170
Period size: 54 Copynumber: 3.3 Consensus size: 53
24788567 ACCCTACAGG
** * ** * ***
24788577 GGTAATTTTACAAACCAGGGTATTTTGGTAATTTTATTGATTGAGGGTATTTT
1 GGTAATTTTGTAAACCAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
*
24788630 GGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
1 GGTAATTTTGTAAACC-AGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
* * * *** * *
24788684 GGTAATTCTGTAAATCGAGGATAAAATGGTAATTCTGTAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAA-CCAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
24788738 GGTAATTTTGTAAA
1 GGTAATTTTGTAAA
24788752 TCGAGAGTAA
Statistics
Matches: 100, Mismatches: 20, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
53 14 0.14
54 85 0.85
55 1 0.01
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.37
Consensus pattern (53 bp):
GGTAATTTTGTAAACCAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAT
Found at i:24788761 original size:27 final size:27
Alignment explanation
Indices: 24788658--24788773 Score: 187
Period size: 27 Copynumber: 4.3 Consensus size: 27
24788648 GGGTATTTTA
*
24788658 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
24788685 GTAATTCTGTAAATCGAGGATAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
24788712 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
24788739 GTAATTTTGTAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
24788766 GTAATTCT
1 GTAATTCT
24788774 ATCTTATTTC
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:24788808 original size:27 final size:26
Alignment explanation
Indices: 24788778--24788847 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
24788768 AATTCTATCT
*
24788778 TATTTCGGTAATTTTATAAATTGAGGA
1 TATTT-GGTAATTTTATAAATCGAGGA
* *
24788805 TATTTAGGTAATTTTATAAATCGGGGG
1 TATTT-GGTAATTTTATAAATCGAGGA
24788832 TACTTTGGTAATTTTA
1 TA-TTTGGTAATTTTA
24788848 CAAGTCAAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 35 0.92
28 3 0.08
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (26 bp):
TATTTGGTAATTTTATAAATCGAGGA
Found at i:24790507 original size:35 final size:35
Alignment explanation
Indices: 24790467--24790536 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
24790457 ACGATTCTAC
*
24790467 CACGTAATATCGCTTAGTATTAGTTAAACATTAGA
1 CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
24790502 CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
1 CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
24790537 AAACCAATGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (35 bp):
CACGTAATACCGCTTAGTATTAGTTAAACATTAGA
Found at i:24805330 original size:20 final size:20
Alignment explanation
Indices: 24805273--24805330 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
24805263 AAGACGATAA
*
24805273 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTATTT
24805293 ACCATTCCATTTACTTATTT
1 ACCATTCCATTTACTTATTT
*
24805313 TCCATTCCATTTACTTAT
1 ACCATTCCATTTACTTAT
24805331 CATGAGCTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (20 bp):
ACCATTCCATTTACTTATTT
Found at i:24810595 original size:3 final size:3
Alignment explanation
Indices: 24810580--24810621 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
24810570 CTTAATGAAT
* * *
24810580 AAG AAG AAA AAG AAG AAG AA- AAA AAA AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
24810622 GAATGTTGAG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:24814068 original size:2 final size:2
Alignment explanation
Indices: 24814061--24814089 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
24814051 TTTAATCTGC
24814061 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24814090 GTTTAATCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24816200 original size:24 final size:24
Alignment explanation
Indices: 24816173--24816220 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
24816163 AATGGAACTC
24816173 AAAATTTGATGTTCCGATTTATTA
1 AAAATTTGATGTTCCGATTTATTA
24816197 AAAATTTGATGTTCCGATTTATTA
1 AAAATTTGATGTTCCGATTTATTA
24816221 TTCCGGCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.46
Consensus pattern (24 bp):
AAAATTTGATGTTCCGATTTATTA
Found at i:24829096 original size:31 final size:31
Alignment explanation
Indices: 24829051--24829132 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
24829041 TTGGATGTTC
* *
24829051 AACCTTGCATCTTCCATCTTTCATCTCCCTT
1 AACCTTCCACCTTCCATCTTTCATCTCCCTT
* * *
24829082 AACCTTCCACCTTCCACCTTTCATCTTCTTT
1 AACCTTCCACCTTCCATCTTTCATCTCCCTT
**
24829113 AACCTTTAACCTTCCATCTT
1 AACCTTCCACCTTCCATCTT
24829133 CCTTATGTTG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.18, C:0.39, G:0.01, T:0.41
Consensus pattern (31 bp):
AACCTTCCACCTTCCATCTTTCATCTCCCTT
Found at i:24831412 original size:49 final size:48
Alignment explanation
Indices: 24831358--24831461 Score: 129
Period size: 49 Copynumber: 2.1 Consensus size: 48
24831348 GATCCCATGT
*
24831358 AAGACCAT-TTTGGGGACTTGGCATCGGCATCTGAGATGAGAGCCAGTGA
1 AAGACCATGTTT-GGGACATGGCATCGGCAT-TGAGATGAGAGCCAGTGA
* * * * *
24831407 AAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGGGCCAGTGT
1 AAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGAGCCAGTGA
24831455 AAGACCA
1 AAGACCA
24831462 CATCTGGGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 21 0.44
49 24 0.50
50 3 0.06
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (48 bp):
AAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGAGCCAGTGA
Found at i:24831470 original size:48 final size:48
Alignment explanation
Indices: 24831355--24831523 Score: 146
Period size: 47 Copynumber: 3.5 Consensus size: 48
24831345 TGAGATCCCA
* * * *
24831355 TGTAAGACCAT-TTTGGGGACTTGGCATCGGCATCTGAGATGAGAGCCAG
1 TGTAAGACCATATCT-GGGACATGGCATCGGCAT-TGATATGTGAGCCAG
* * * * *
24831404 TGAAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGGGCCAG
1 TGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGAGCCAG
* * * * **
24831452 TGTAAGACCACATCTGGGATATGACAT-GGCATCGATATGTGATTTCA-
1 TGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGA-GCCAG
*
24831499 TGTAAGACCATATCTGGGATATGGC
1 TGTAAGACCATATCTGGGACATGGC
24831524 GCTAATATAA
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
47 35 0.35
48 35 0.35
49 26 0.26
50 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATATCTGGGACATGGCATCGGCATTGATATGTGAGCCAG
Found at i:24831697 original size:42 final size:42
Alignment explanation
Indices: 24831539--24831697 Score: 151
Period size: 42 Copynumber: 3.6 Consensus size: 42
24831529 TATAAGATTT
* *
24831539 CGTGTAAGACCATGTTTGGGACATGGCATCGATATG-AGGTCC
1 CGTGTAAGACCATGTCTGGGACATGGCATCGATATGTA-GACC
*
24831581 CGTGTAAGACCATGTCTGGGACATGGCATCG-TCACTGACATTAGACTT
1 CGTGTAAGACCATGTCTGGGACATGGCATCGAT-A-TG----TAGAC-C
* ** *
24831629 CGTATAAGACCAAATCTGGGATATGGCATCGATATGTAGACC
1 CGTGTAAGACCATGTCTGGGACATGGCATCGATATGTAGACC
* *
24831671 CATGTAAGACCATGTCGGGGACATGGC
1 CGTGTAAGACCATGTCTGGGACATGGC
24831698 TTTGGCATTC
Statistics
Matches: 94, Mismatches: 14, Indels: 18
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 52 0.55
43 7 0.07
47 4 0.04
48 29 0.31
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.25
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATGGCATCGATATGTAGACC
Found at i:24834101 original size:23 final size:23
Alignment explanation
Indices: 24834071--24834114 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
24834061 TATTAAAGTG
*
24834071 ATTATTTTAATATTAAATATTCT
1 ATTATTTTAAGATTAAATATTCT
*
24834094 ATTATTTTAAGATTTAATATT
1 ATTATTTTAAGATTAAATATT
24834115 AAAGTGATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
ATTATTTTAAGATTAAATATTCT
Found at i:24835888 original size:24 final size:24
Alignment explanation
Indices: 24835859--24835942 Score: 125
Period size: 24 Copynumber: 3.5 Consensus size: 24
24835849 TGGATGTTCA
24835859 ACCTTTCATCTTCCTCAACCTTTC
1 ACCTTTCATCTTCCTCAACCTTTC
*
24835883 ACCTTTCATCTTCCTCACCCTTTC
1 ACCTTTCATCTTCCTCAACCTTTC
*
24835907 ACCTTTCATCTTCCTTAA-CTCTTC
1 ACCTTTCATCTTCCTCAACCT-TTC
*
24835931 ACATTTCATCTT
1 ACCTTTCATCTT
24835943 ATTGTAACCT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
23 2 0.04
24 53 0.96
ACGTcount: A:0.17, C:0.39, G:0.00, T:0.44
Consensus pattern (24 bp):
ACCTTTCATCTTCCTCAACCTTTC
Found at i:24838417 original size:16 final size:15
Alignment explanation
Indices: 24838393--24838423 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
24838383 AACTGTTTTA
24838393 TTACAAATTTCACTT
1 TTACAAATTTCACTT
24838408 TTACATAATTTCACTT
1 TTACA-AATTTCACTT
24838424 ATTCCATTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.48
Consensus pattern (15 bp):
TTACAAATTTCACTT
Found at i:24838742 original size:50 final size:50
Alignment explanation
Indices: 24838622--24839015 Score: 382
Period size: 50 Copynumber: 7.8 Consensus size: 50
24838612 AATCGAAGCT
* ** *
24838622 ATCTGGTACACATAGTAGCCTACACTTAGTACTACACATACGACC-AACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
*
24838671 AT-TCGGTACACGTAGTAGCCTGCACTTAGTACTACACACT-TGACCTAACC
1 ATCT-GGTACACATAGTAGCCTGCACTTAGTACTACACA-TGTGACCTAACC
* * *
24838721 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * *
24838771 ATCTGGTACACGTAGTAGCTTGAACTTAGTACTACACACGTGACCTAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * * **
24838821 ATTTGATACACATAGTAGCCTACACTTAGTACTACACATGTGA-TTGAAGTT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CC
* * * * * * * * *
24838872 GTCAGGTACGCATAGAAGACTGCACTTAGTACTATACATGCGACTTAACT
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
* * * *
24838922 ATCTGGTACACGTAGTAGCCTGTATTTAGTACTACACACGTGACCTAAAACC
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACC
*** * *
24838974 ATCTTAAACACATAGTAGCTTGCACATAGTACTACACATGTG
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTG
24839016 TTCTCACAAT
Statistics
Matches: 281, Mismatches: 54, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.00
49 40 0.14
50 166 0.59
51 36 0.13
52 38 0.14
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (50 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAACC
Found at i:24838930 original size:151 final size:152
Alignment explanation
Indices: 24838740--24839015 Score: 430
Period size: 151 Copynumber: 1.8 Consensus size: 152
24838730 ACGTAGTAGC
* *
24838740 CTGCACTTAGTACTACACATGTGACCTAACTATCTGGTACACGTAGTAGCTTGAACTTAGTACTA
1 CTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGAACTTAGTACTA
* *
24838805 CACACGTGACCT-AACCAT-TTGATACACATAGTAGCCTACACTTAGTACTACACATGTGATTGA
66 CACACGTGACCTAAACCATCTT-AAACACATAGTAGCCTACACATAGTACTACACATGTGATTGA
24838868 AGTTGTCAGGTACGCATAGAAGA
130 AGTTGTCAGGTACGCATAGAAGA
* * * *
24838891 CTGCACTTAGTACTATACATGCGACTTAACTATCTGGTACACGTAGTAGCCTGTATTTAGTACTA
1 CTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGAACTTAGTACTA
* *
24838956 CACACGTGACCTAAAACCATCTTAAACACATAGTAGCTTGCACATAGTACTACACATGTG
66 CACACGTGACCT-AAACCATCTTAAACACATAGTAGCCTACACATAGTACTACACATGTG
24839016 TTCTCACAAT
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
151 71 0.63
153 39 0.35
154 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (152 bp):
CTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGAACTTAGTACTA
CACACGTGACCTAAACCATCTTAAACACATAGTAGCCTACACATAGTACTACACATGTGATTGAA
GTTGTCAGGTACGCATAGAAGA
Found at i:24840543 original size:6 final size:6
Alignment explanation
Indices: 24840532--24840562 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
24840522 AATGAATTAC
*
24840532 TTATAT TTATAT CTATAT TTATAT TTATAT T
1 TTATAT TTATAT TTATAT TTATAT TTATAT T
24840563 GTAACAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (6 bp):
TTATAT
Found at i:24845604 original size:16 final size:16
Alignment explanation
Indices: 24845570--24845615 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
24845560 AAGATTTAAA
24845570 TATTGAA-TTT-TTAG
1 TATTGAATTTTATTAG
*
24845584 TATTGAATTTTATTGG
1 TATTGAATTTTATTAG
24845600 TATTGAATTTATATTA
1 TATTGAATTT-TATTA
24845616 AAAATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 7 0.26
15 3 0.11
16 13 0.48
17 4 0.15
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (16 bp):
TATTGAATTTTATTAG
Found at i:24847437 original size:25 final size:25
Alignment explanation
Indices: 24847393--24847491 Score: 117
Period size: 25 Copynumber: 4.0 Consensus size: 25
24847383 CACAACTCTT
* * *
24847393 ATGAGCTTCCCGATACTCAGCTCAC
1 ATGAGCTTCCCGTTATTCAGCTCGC
** *
24847418 ATGAGCTTTTCGTTATTCAGTTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
*
24847443 ATGAGCTTCCCGTTATTCTGCTCGC
1 ATGAGCTTCCCGTTATTCAGCTCGC
* *
24847468 ATGAGCTTCCCATTATTCAACTCG
1 ATGAGCTTCCCGTTATTCAGCTCG
24847492 GAAGAACTTA
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 61 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.34
Consensus pattern (25 bp):
ATGAGCTTCCCGTTATTCAGCTCGC
Found at i:24850455 original size:42 final size:42
Alignment explanation
Indices: 24850334--24850455 Score: 149
Period size: 43 Copynumber: 2.9 Consensus size: 42
24850324 TATCGTACCA
* * *
24850334 ATGCTATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
24850376 ATGCCAATAGCCCA-ACTATAGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGTAA-TCTCATATCG
*
24850419 ATGCCATATCCCAGATTTGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
24850456 GTCACCCTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
42 31 0.46
43 36 0.54
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:24859691 original size:40 final size:40
Alignment explanation
Indices: 24859636--24859857 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
24859626 TATTCGAATG
* *
24859636 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
24859676 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
24859716 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
24859756 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
24859796 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
24859836 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
24859858 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:24861795 original size:40 final size:39
Alignment explanation
Indices: 24861695--24861828 Score: 112
Period size: 40 Copynumber: 3.4 Consensus size: 39
24861685 TATTACAATT
* * **
24861695 TCGCACACTAAGTGCCTTT-CATAGCTGAAGCTATCAGTC
1 TCGCACACTAAGTG-CTTTATATAGCTGAAGCTATCCGAA
* * * *
24861734 TTGCATACTAAGTG-TCGTATATAACTGAAGCTAATCCGAA
1 TCGCACACTAAGTGCT-TTATATAGCTGAAGCT-ATCCGAA
* *
24861774 TCGCACACTAAGTGCTTTATATAGCTAAAGATATCTC-AA
1 TCGCACACTAAGTGCTTTATATAGCTGAAGCTATC-CGAA
24861813 TACGCACACTAAGTGC
1 T-CGCACACTAAGTGC
24861829 CAAACATAAT
Statistics
Matches: 75, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 29 0.39
40 43 0.57
41 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (39 bp):
TCGCACACTAAGTGCTTTATATAGCTGAAGCTATCCGAA
Found at i:24872138 original size:48 final size:48
Alignment explanation
Indices: 24872067--24872346 Score: 194
Period size: 48 Copynumber: 5.8 Consensus size: 48
24872057 GGTGAATTGT
* *
24872067 CGATGCTATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGTC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGTC
* * *** * *
24872115 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCGCCTCAATTC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGTC
* ** * *
24872163 CAATGATATGTCTCAAACATGGTCTTACACTGGCTCTCATAATGT-G-GT-
1 CGATGCCATGTCCCAAACATGGTCTTACACTGG--CTCA-CATGTCGAGTC
* * ** *
24872211 CGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTTAT-TAC-ATTGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGT-CGAGT-C
* * * * * * * *
24872259 CGATGTCATGTTCCAAACATTGTCTTACACAGGCTCTCGTATCGTGGT-
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCG-AGTC
* * *
24872307 CGATGCCATGTTCCAGACATGGTCTTACACTGGCGCACAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACAT
24872347 ATCAACCAAA
Statistics
Matches: 174, Mismatches: 47, Indels: 22
0.72 0.19 0.09
Matches are distributed among these distances:
44 1 0.01
45 2 0.01
46 4 0.02
48 160 0.92
49 2 0.01
50 4 0.02
51 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATGTCGAGTC
Found at i:24872237 original size:96 final size:95
Alignment explanation
Indices: 24872074--24872338 Score: 308
Period size: 96 Copynumber: 2.8 Consensus size: 95
24872064 TGTCGATGCT
* *
24872074 ATGTTCCAAACATGGTCTTACACTGG--CTCACATGTCGAGTCCGATGCCATGTCCCAAACATGG
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCATATGT-G-GT-CGATGCCATGTCCCAGACATGG
*
24872137 TCTTACACTAGCTCTCGCCTCA-ATT-CCAATGAT-
63 TCTTACACT-G-TCTCGCATCACATTGCCAATG-TC
24872170 ATG-TCTCAAACATGGTCTTACACTGGCTCTCATAATGTGGTCGATGCCATGTCCCAGACATGGT
1 ATGTTC-CAAACATGGTCTTACACTGGCTCTCAT-ATGTGGTCGATGCCATGTCCCAGACATGGT
** * *
24872234 CTTACACTGTCTCTTATTACATTGCCGATGTC
64 CTTACACTGTCTCGCATCACATTGCCAATGTC
* * * *
24872266 ATGTTCCAAACATTGTCTTACACAGGCTCTCGTATCGTGGTCGATGCCATGTTCCAGACATGGTC
1 ATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-GTGGTCGATGCCATGTCCCAGACATGGTC
24872331 TTACACTG
65 TTACACTG
24872339 GCGCACATAT
Statistics
Matches: 149, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
94 6 0.04
95 9 0.06
96 121 0.81
97 4 0.03
98 5 0.03
99 4 0.03
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (95 bp):
ATGTTCCAAACATGGTCTTACACTGGCTCTCATATGTGGTCGATGCCATGTCCCAGACATGGTCT
TACACTGTCTCGCATCACATTGCCAATGTC
Found at i:24884215 original size:17 final size:17
Alignment explanation
Indices: 24884193--24884226 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24884183 TACTTTAAAC
*
24884193 AAATAGAGTAATAGAAT
1 AAATAGACTAATAGAAT
24884210 AAATAGACTAATAGAAT
1 AAATAGACTAATAGAAT
24884227 CCTTATTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.03, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATAGACTAATAGAAT
Found at i:24890023 original size:23 final size:24
Alignment explanation
Indices: 24889981--24890035 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
24889971 CAATTATATC
24889981 TTCAATTATATGTTCATGAACATG
1 TTCAATTATATGTTCATGAACATG
* *
24890005 TTCATTTA-ATGTTCGTGAACATG
1 TTCAATTATATGTTCATGAACATG
*
24890028 TTCGATTA
1 TTCAATTA
24890036 AGTTAAATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (24 bp):
TTCAATTATATGTTCATGAACATG
Found at i:24890036 original size:23 final size:22
Alignment explanation
Indices: 24889985--24890053 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
24889975 TATATCTTCA
24889985 ATTATATGTTCATGAACATGTTC
1 ATTA-ATGTTCATGAACATGTTC
*
24890008 ATTTAATGTTCGTGAACATGTTC
1 A-TTAATGTTCATGAACATGTTC
* *
24890031 GATTAA-GTTAAATGAATATGTTC
1 -ATTAATGTT-CATGAACATGTTC
24890054 GTGAACATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 3 0.08
23 32 0.82
24 4 0.10
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (22 bp):
ATTAATGTTCATGAACATGTTC
Found at i:24895425 original size:15 final size:15
Alignment explanation
Indices: 24895405--24895443 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
24895395 GTTGCAAATG
24895405 TAAAATTATATTTTT
1 TAAAATTATATTTTT
*
24895420 TAAAA-TATAATTTT
1 TAAAATTATATTTTT
24895434 T-AAATTATAT
1 TAAAATTATAT
24895444 AAATTGTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 3 0.14
14 13 0.62
15 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAAAATTATATTTTT
Found at i:24895661 original size:13 final size:14
Alignment explanation
Indices: 24895634--24895696 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
24895624 CAGGCGCGAC
24895634 ATATTATTTTATTAAT
1 ATATT-TTTT-TTAAT
24895650 A-ATTTTTTTTAA-
1 ATATTTTTTTTAAT
*
24895662 ATATTTTTATT-AT
1 ATATTTTTTTTAAT
*
24895675 -TA-TTTTTTTATT
1 ATATTTTTTTTAAT
24895687 ATATTTTTTT
1 ATATTTTTTT
24895697 AAAAAAAATC
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
11 6 0.15
12 5 0.13
13 14 0.36
14 10 0.26
15 3 0.08
16 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
ATATTTTTTTTAAT
Found at i:24895697 original size:13 final size:13
Alignment explanation
Indices: 24895634--24895697 Score: 67
Period size: 14 Copynumber: 4.8 Consensus size: 13
24895624 CAGGCGCGAC
*
24895634 ATATTATTTTATT
1 ATATTTTTTTATT
*
24895647 AATAATTTTTT-TT
1 -ATATTTTTTTATT
* *
24895660 AAATATTTTTATT
1 ATATTTTTTTATT
24895673 ATTATTTTTTTATT
1 A-TATTTTTTTATT
24895687 ATATTTTTTTA
1 ATATTTTTTTA
24895698 AAAAAAATCT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
12 7 0.17
13 15 0.37
14 19 0.46
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
ATATTTTTTTATT
Found at i:24895957 original size:13 final size:14
Alignment explanation
Indices: 24895934--24895962 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
24895924 TAGAAAAAAA
24895934 AAGAGAAGAAGAAG
1 AAGAGAAGAAGAAG
24895948 AAGA-AAGAAGAAG
1 AAGAGAAGAAGAAG
24895961 AA
1 AA
24895963 ATAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
AAGAGAAGAAGAAG
Found at i:24896030 original size:17 final size:17
Alignment explanation
Indices: 24895987--24896041 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
24895977 TAGTTAAATT
24895987 TTTATAATTATTT-TAAA
1 TTTA-AATTATTTGTAAA
*
24896004 ATTAAATTATTTGT-AA
1 TTTAAATTATTTGTAAA
24896020 TTTAGAATTATTTGATAAA
1 TTTA-AATTATTTG-TAAA
24896039 TTT
1 TTT
24896042 TTGTGTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 13 0.41
17 13 0.41
18 1 0.03
19 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
TTTAAATTATTTGTAAA
Found at i:24896099 original size:60 final size:60
Alignment explanation
Indices: 24895991--24896108 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 60
24895981 TAAATTTTTA
* *
24895991 TAATTATTTTAAAATTAAATTATTTGTAATTTAGAATTATTTGATAAATT-TTTGTGTTAG
1 TAATTAATTTAAAATTAAATTATTAGTAATTTAGAATTATTTGATAAATTATTT-TGTTAG
* *
24896051 TAATTAATTTAAAATTAATTTATTAGTAATTTA-AGATTATATT-TTAAATTATTTTGTT
1 TAATTAATTTAAAATTAAATTATTAGTAATTTAGA-ATTAT-TTGATAAATTATTTTGTT
24896109 TAGTTTAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
59 1 0.02
60 45 0.88
61 5 0.10
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (60 bp):
TAATTAATTTAAAATTAAATTATTAGTAATTTAGAATTATTTGATAAATTATTTTGTTAG
Found at i:24896402 original size:16 final size:17
Alignment explanation
Indices: 24896365--24896402 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
24896355 CTGTATTATG
*
24896365 ATTTTTTTAGAAATATA
1 ATTTTTTAAGAAATATA
*
24896382 TTTTTTTAAGAAA-ATA
1 ATTTTTTAAGAAATATA
24896398 ATTTT
1 ATTTT
24896403 ATAGTTGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (17 bp):
ATTTTTTAAGAAATATA
Found at i:24897343 original size:296 final size:297
Alignment explanation
Indices: 24896466--24897476 Score: 1751
Period size: 297 Copynumber: 3.4 Consensus size: 297
24896456 TAGTGTTTTA
24896466 TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTGAATTATTTATTTGATAATTT
1 TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTGAATTATTTATTTGATAATTT
24896531 TTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTATAGGTTACGTGAAAGAA
66 TTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTATAGGTTACGTGAAAGAA
24896596 ACTACTTAGGAATGTTTCAATTTCAATTATTTTTAATTCATATGTTTTTTAATCTTTAGATAATT
131 ACTACTTAGGAATGTTTCAATTTCAATTATTTTTAATTCATATGTTTTTTAATCTTTAGATAATT
24896661 TATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTAATTTTTAAAATGGTTGTG
196 TATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTAATTTTTAAAATGGTTGTG
24896726 CAATAAAATTATTTTTTATTAGTGTATTAGTGTAGTG
261 CAATAAAATTATTTTTTATTAGTGTATTAGTGTAGTG
*
24896763 TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTGAATTATTTGTTTGATAATTT
1 TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTGAATTATTTATTTGATAATTT
24896828 TTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTATAGGTTACGTGAAAGAA
66 TTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTATAGGTTACGTGAAAGAA
24896893 ACTACTTAGGAATGTTTCAATTTCAATTATTTTTAATTCATATGTTTTTTAATCTTTAGATAATT
131 ACTACTTAGGAATGTTTCAATTTCAATTATTTTTAATTCATATGTTTTTTAATCTTTAGATAATT
*
24896958 TATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTCATTTTTAAAATGGTTGTG
196 TATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTAATTTTTAAAATGGTTGTG
24897023 CAATAAAATTA-TTTTTATTAGTGTATTAGTGTAGTG
261 CAATAAAATTATTTTTTATTAGTGTATTAGTGTAGTG
*
24897059 TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTTAATTATTTATTTGATAATTT
1 TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTGAATTATTTATTTGATAATTT
* **
24897124 TTATTGATTGATTAAAATTTTGATTAAATTTGTTATTATATAATTTTATAGGTTGTGTGAAAGAA
66 TTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTATAGGTTACGTGAAAGAA
*
24897189 ACTA-TTCAGGTATGTTTCAATTTCAATTATTTTTAATTCATATG-TTTTTAATCTTTAGATAAT
131 ACTACTT-AGGAATGTTTCAATTTCAATTATTTTTAATTCATATGTTTTTTAATCTTTAGATAAT
*
24897252 TTATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTAATTTTCAAAATGGTTGT
195 TTATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTAATTTTTAAAATGGTTGT
* *
24897317 GCAATAAAATTATTTTTTAGTAGTGTATTAGTGTATTG
260 GCAATAAAATTATTTTTTATTAGTGTATTAGTGTAGTG
* * * * * *
24897355 TGATATTTTGGATAAGGT-ATTTTAAAAAAATGATTAGGTTATATAAATTTATTGAATTATTTAT
1 TGAT-TTTT---TAATGTAATTTTTATATAATG--TA---AAT-TTAATTTATTGAATTATTTAT
24897419 TTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTA
56 TTGATAATTTTTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTA
24897477 ATTGCAGATT
Statistics
Matches: 682, Mismatches: 20, Indels: 16
0.95 0.03 0.02
Matches are distributed among these distances:
295 96 0.14
296 217 0.32
297 273 0.40
299 11 0.02
300 5 0.01
301 2 0.00
304 2 0.00
305 76 0.11
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (297 bp):
TGATTTTTTAATGTAATTTTTATATAATGTAAATTTAATTTATTGAATTATTTATTTGATAATTT
TTATTGATTGATTAAAATTTTGATTAAATTTGTTGTTATATAATTTTATAGGTTACGTGAAAGAA
ACTACTTAGGAATGTTTCAATTTCAATTATTTTTAATTCATATGTTTTTTAATCTTTAGATAATT
TATATTTATTTTTTATTGTATATAAATGATGGGGAATTATAAAATTAATTTTTAAAATGGTTGTG
CAATAAAATTATTTTTTATTAGTGTATTAGTGTAGTG
Found at i:24899066 original size:6 final size:6
Alignment explanation
Indices: 24899055--24899112 Score: 71
Period size: 6 Copynumber: 9.7 Consensus size: 6
24899045 GCCGGAGGTA
* ** *
24899055 GAGCCG GAGCCG GAGCCG GAGCCG GAGCCG GATCTA GAGCCG GAGCCA
1 GAGCCG GAGCCG GAGCCG GAGCCG GAGCCG GAGCCG GAGCCG GAGCCG
*
24899103 GATCCG GAGC
1 GAGCCG GAGC
24899113 TACACTCCGG
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.21, C:0.31, G:0.43, T:0.05
Consensus pattern (6 bp):
GAGCCG
Found at i:24899068 original size:18 final size:18
Alignment explanation
Indices: 24899045--24899101 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 18
24899035 ATGCACCAGC
*
24899045 GCCGGAGGTAGAGCCGGA
1 GCCGGAGCTAGAGCCGGA
**
24899063 GCCGGAGCCGGAGCCGGA
1 GCCGGAGCTAGAGCCGGA
*
24899081 GCCGGATCTAGAGCCGGA
1 GCCGGAGCTAGAGCCGGA
24899099 GCC
1 GCC
24899102 AGATCCGGAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.19, C:0.30, G:0.46, T:0.05
Consensus pattern (18 bp):
GCCGGAGCTAGAGCCGGA
Found at i:24899070 original size:12 final size:12
Alignment explanation
Indices: 24899040--24899112 Score: 74
Period size: 12 Copynumber: 6.1 Consensus size: 12
24899030 ATATCATGCA
*
24899040 CCAGCGCCGGAG
1 CCAGAGCCGGAG
**
24899052 GTAGAGCCGGAG
1 CCAGAGCCGGAG
*
24899064 CCGGAGCCGGAG
1 CCAGAGCCGGAG
* *
24899076 CCGGAGCCGGAT
1 CCAGAGCCGGAG
*
24899088 CTAGAGCCGGAG
1 CCAGAGCCGGAG
*
24899100 CCAGATCCGGAG
1 CCAGAGCCGGAG
24899112 C
1 C
24899113 TACACTCCGG
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 49 1.00
ACGTcount: A:0.21, C:0.32, G:0.42, T:0.05
Consensus pattern (12 bp):
CCAGAGCCGGAG
Found at i:24899112 original size:18 final size:18
Alignment explanation
Indices: 24899055--24899112 Score: 80
Period size: 18 Copynumber: 3.2 Consensus size: 18
24899045 GCCGGAGGTA
*
24899055 GAGCCGGAGCCGGAGCCG
1 GAGCCGGAGCCGGATCCG
**
24899073 GAGCCGGAGCCGGATCTA
1 GAGCCGGAGCCGGATCCG
*
24899091 GAGCCGGAGCCAGATCCG
1 GAGCCGGAGCCGGATCCG
24899109 GAGC
1 GAGC
24899113 TACACTCCGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.21, C:0.31, G:0.43, T:0.05
Consensus pattern (18 bp):
GAGCCGGAGCCGGATCCG
Found at i:24899347 original size:33 final size:33
Alignment explanation
Indices: 24899250--24899351 Score: 150
Period size: 33 Copynumber: 3.1 Consensus size: 33
24899240 TTCTACCTCC
* *
24899250 TATCCACCACCGTACTCCGCTCCTTCCGGTTCC
1 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
24899283 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
1 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
** * *
24899316 TATCCACCACCGTACTCTACTCCTGCTGGCTCA
1 TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
24899349 TAT
1 TAT
24899352 TGTAATATCC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.16, C:0.45, G:0.12, T:0.27
Consensus pattern (33 bp):
TATCCACCACCGTACTCCGCTCCTTCCGGCTCA
Found at i:24900693 original size:46 final size:46
Alignment explanation
Indices: 24900640--24900815 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
24900630 TATTTGGGCA
24900640 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
24900686 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
24900733 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
24900779 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24900816 GCGGGTTACA
Statistics
Matches: 113, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.59
47 34 0.30
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:24900795 original size:93 final size:93
Alignment explanation
Indices: 24900636--24900807 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
24900626 GGGATATTTG
* *
24900636 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24900701 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
*
24900729 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24900794 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
24900808 GCTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:24902202 original size:33 final size:33
Alignment explanation
Indices: 24902162--24902250 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
24902152 CCGTATCCGT
* *
24902162 CGCCGTTCTCTTCTCCCCCTGGCCCATATCCAG
1 CGCCGTTCTCTACTCCCCCCGGCCCATATCCAG
* *
24902195 CGTCGTTCTCTACTCCCCCCGGCCCGTATCCAG
1 CGCCGTTCTCTACTCCCCCCGGCCCATATCCAG
24902228 CGCCGTTCTCTACTCCCCCCGGC
1 CGCCGTTCTCTACTCCCCCCGGC
24902251 TCGAGTTCAT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.08, C:0.51, G:0.17, T:0.25
Consensus pattern (33 bp):
CGCCGTTCTCTACTCCCCCCGGCCCATATCCAG
Found at i:24902450 original size:20 final size:21
Alignment explanation
Indices: 24902410--24902459 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
24902400 GGTTTTGTAT
24902410 TGTAAATTACTTTATTTTTTA
1 TGTAAATTACTTTATTTTTTA
*
24902431 TGTAAGTTACTTTA-TTTTTA
1 TGTAAATTACTTTATTTTTTA
24902451 TGTAAATTA
1 TGTAAATTA
24902460 TTTTTTGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.30, C:0.04, G:0.08, T:0.58
Consensus pattern (21 bp):
TGTAAATTACTTTATTTTTTA
Found at i:24905373 original size:14 final size:14
Alignment explanation
Indices: 24905340--24905374 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
24905330 TCTCACAATT
*
24905340 TTCAAAATTTTTGA
1 TTCAAAATTTTTCA
*
24905354 TGCAAAATTTTTCA
1 TTCAAAATTTTTCA
24905368 TTCAAAA
1 TTCAAAA
24905375 CCTAGCAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.40, C:0.11, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCAAAATTTTTCA
Found at i:24907026 original size:16 final size:17
Alignment explanation
Indices: 24906999--24907030 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24906989 TAATTAACCA
24906999 AAAACAAAACAAAGAAG
1 AAAACAAAACAAAGAAG
24907016 AAAAC-AAACAAAGAA
1 AAAACAAAACAAAGAA
24907031 AAGAGAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.78, C:0.12, G:0.09, T:0.00
Consensus pattern (17 bp):
AAAACAAAACAAAGAAG
Found at i:24907033 original size:21 final size:20
Alignment explanation
Indices: 24907000--24907038 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
24906990 AATTAACCAA
24907000 AAACAAAACAAAGAAGAAAAC
1 AAACAAAACAAAG-AGAAAAC
24907021 AAACAAAGA-AAAGAGAAA
1 AAACAAA-ACAAAGAGAAA
24907039 GGACCAGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.29
21 11 0.65
22 1 0.06
ACGTcount: A:0.77, C:0.10, G:0.13, T:0.00
Consensus pattern (20 bp):
AAACAAAACAAAGAGAAAAC
Found at i:24907171 original size:14 final size:14
Alignment explanation
Indices: 24907152--24907210 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
24907142 TTTTTTTAAA
24907152 AAAAATATAATAAT
1 AAAAATATAATAAT
*
24907166 AAAAATAAAAATAAT
1 AAAAAT-ATAATAAT
**
24907181 -AAAATATTTTAA-
1 AAAAATATAATAAT
* *
24907193 AAAAATTTATTAAT
1 AAAAATATAATAAT
24907207 AAAA
1 AAAA
24907211 TAATATGTCG
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
13 14 0.39
14 15 0.42
15 7 0.19
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAAATATAATAAT
Done.