Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 86 of 433
Found at i:25571923 original size:43 final size:43
Alignment explanation
Indices: 25571861--25572015 Score: 120
Period size: 43 Copynumber: 3.6 Consensus size: 43
25571851 ACAATGCCAT
* * *
25571861 ATCCCAGATATGGTCTTACATGTCATCATAT-ATCGATGCCAAC
1 ATCCCAAACATGGTCTTACATGTAATCATATAAT-GATGCCAAC
* * * * *
25571904 ATCCCAAACGTGGTTTTACACGAAATCATATAATGATGCCAAT
1 ATCCCAAACATGGTCTTACATGTAATCATATAATGATGCCAAC
* * * * *
25571947 GTCCCAGACATGGTCTTACATGTAAACACAATACA--ATG-CAAT
1 ATCCCAAACATGGTCTTACATGTAATCA-TATA-ATGATGCCAAC
* *
25571989 GTCCCAGACATGGTCTTACATGTAATC
1 ATCCCAAACATGGTCTTACATGTAATC
25572016 TCATCTTGAT
Statistics
Matches: 92, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
42 30 0.33
43 56 0.61
44 5 0.05
45 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATCCCAAACATGGTCTTACATGTAATCATATAATGATGCCAAC
Found at i:25581964 original size:29 final size:29
Alignment explanation
Indices: 25581829--25581960 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
25581819 GTGACGAGAT
25581829 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
25581858 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
25581887 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
25581916 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
25581945 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
25581961 AGCTCGGAGG
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:25581976 original size:87 final size:86
Alignment explanation
Indices: 25581829--25582017 Score: 202
Period size: 87 Copynumber: 2.2 Consensus size: 86
25581819 GTGACGAGAT
** * * * *
25581829 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCACT
*
25581894 AAGTGTGCGTGCTGGAAATATA-
66 AAGTGTGCGGGCT-GAAAT-TAC
** * *
25581916 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGG-AGGGTATGGCAC
1 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCT-GGAAAGATATGGCAC
** *
25581980 TGTGTGTGCGGGCTTAAATTAC
65 TAAGTGTGCGGGCTGAAATTAC
25582002 GTGGCACTAAGTGTGC
1 -TGGCACTAAGTGTGC
25582018 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
85 2 0.02
86 4 0.05
87 77 0.91
88 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (86 bp):
TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCACT
AAGTGTGCGGGCTGAAATTAC
Found at i:25589886 original size:29 final size:29
Alignment explanation
Indices: 25589751--25589882 Score: 210
Period size: 29 Copynumber: 4.6 Consensus size: 29
25589741 GTGACGAGAT
25589751 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
25589780 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
25589809 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
** *
25589838 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
25589867 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
25589883 AGCTCGGAGG
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:25589898 original size:87 final size:86
Alignment explanation
Indices: 25589751--25589939 Score: 202
Period size: 87 Copynumber: 2.2 Consensus size: 86
25589741 GTGACGAGAT
** * * * *
25589751 TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATGGCACT
1 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCACT
*
25589816 AAGTGTGCGTGCTGGAAATATA-
66 AAGTGTGCGGGCT-GAAAT-TAC
** * *
25589838 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTGGGTGTGCGAGCTCGG-AGGGTATGGCAC
1 TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCT-GGAAAGATATGGCAC
** *
25589902 TGTGTGTGCGGGCTTAAATTAC
65 TAAGTGTGCGGGCTGAAATTAC
25589924 GTGGCACTAAGTGTGC
1 -TGGCACTAAGTGTGC
25589940 GAAATCGAGT
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
85 2 0.02
86 4 0.05
87 77 0.91
88 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (86 bp):
TGGCACTAAGTGTGCAAGCTGGAAAAATACGGCACTAAGTGTGCGAGCTGGAAAGATATGGCACT
AAGTGTGCGGGCTGAAATTAC
Found at i:25599171 original size:24 final size:23
Alignment explanation
Indices: 25599133--25599178 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
25599123 AAAACTTTTA
25599133 ATCAAGAAGCTCACAAAGAGCCT
1 ATCAAGAAGCTCACAAAGAGCCT
*
25599156 ATCAGGAATGCTCACAAAGAGCC
1 ATCAAGAA-GCTCACAAAGAGCC
25599179 ATGTAACTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.41, C:0.26, G:0.20, T:0.13
Consensus pattern (23 bp):
ATCAAGAAGCTCACAAAGAGCCT
Found at i:25599356 original size:65 final size:65
Alignment explanation
Indices: 25599240--25599385 Score: 172
Period size: 65 Copynumber: 2.2 Consensus size: 65
25599230 TATCAAGACG
* ** *
25599240 CTCATAAAGAGCTGTATTTGTGTCCGCAACATATGCAAGATCAAACCCGATCACAT-AATAGGAC
1 CTCACAAAGAGCTGCGTTTGTATCCGCAACATATGCAAGATCAAACCCGATCA-ATAAATAGGAC
25599304 A
65 A
* *
25599305 CTCACAAAGAGCTGCGTTTGTATCCGCAACATATG-TAGAATCACAA-TCGATCAATAAATAGGA
1 CTCACAAAGAGCTGCGTTTGTATCCGCAACATATGCAAG-ATCA-AACCCGATCAATAAATAGGA
**
25599368 TG
64 CA
25599370 CTCACAAAGAGCTGCG
1 CTCACAAAGAGCTGCG
25599386 GTAGTCGCAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
64 4 0.06
65 64 0.91
66 2 0.03
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (65 bp):
CTCACAAAGAGCTGCGTTTGTATCCGCAACATATGCAAGATCAAACCCGATCAATAAATAGGACA
Found at i:25602385 original size:29 final size:27
Alignment explanation
Indices: 25602351--25602453 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
25602341 TACTCAATCA
*
25602351 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
25602380 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
25602409 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
25602438 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
25602454 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:25605001 original size:40 final size:39
Alignment explanation
Indices: 25604906--25605110 Score: 214
Period size: 40 Copynumber: 5.2 Consensus size: 39
25604896 CGGAATACAA
* * *
25604906 CCGGATATAACCACATGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATTTAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
** *
25604945 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
*
25604985 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
25605025 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
25605065 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
25605105 CCGGAT
1 CCGGAT
25605111 ATCATTTAAT
Statistics
Matches: 142, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
38 1 0.01
39 26 0.18
40 114 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (39 bp):
CCGGATTTAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:25605055 original size:80 final size:81
Alignment explanation
Indices: 25604906--25605110 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 81
25604896 CGGAATACAA
* * * *
25604906 CCGGATATAACCACATGCACGAATGCCTTC-GGTCTTAGCCCGGA-TAGAACGACTTGCACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
25604969 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
25604985 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
25605048 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * *
25605065 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
25605111 ATCATTTAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 28 0.26
80 76 0.70
81 1 0.01
82 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:25607640 original size:40 final size:40
Alignment explanation
Indices: 25607595--25607760 Score: 199
Period size: 40 Copynumber: 4.2 Consensus size: 40
25607585 CGGAATACAA
*
25607595 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* * * *
25607635 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* *
25607675 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
* ** * * *
25607715 CCGGATTTAGTCACTAGCA-TAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACGAA-TGCCTTCGGGTCTTAGC
25607755 CCGGAT
1 CCGGAT
25607761 TTACTAGCAT
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
39 2 0.02
40 107 0.98
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACGAATGCCTTCGGGTCTTAGC
Found at i:25607742 original size:80 final size:80
Alignment explanation
Indices: 25607595--25607763 Score: 225
Period size: 80 Copynumber: 2.1 Consensus size: 80
25607585 CGGAATACAA
* * *
25607595 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAATG
1 CCGGATTTAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
*
25607660 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
* * * *
25607675 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGA--TAGAACGACTAGCACAAA
*
25607738 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
25607755 CCGGATTTA
1 CCGGATTTA
25607764 CTAGCATAAA
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
80 74 0.95
81 1 0.01
82 3 0.04
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (80 bp):
CCGGATTTAACAACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:25607761 original size:40 final size:40
Alignment explanation
Indices: 25607616--25607796 Score: 192
Period size: 40 Copynumber: 4.6 Consensus size: 40
25607606 CACATGCACG
** * * *
25607616 AATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACA
1 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCATA
* * **
25607656 AATGCCTTCGGGTATTAGCCCGGATTTAACAACTTGCACG
1 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCATA
*
25607696 AATGCCTTCGGGTCTTAGCCCGGATTTAGTC-ACTAGCATA
1 AATGCCTTCGGGTCTTAGCCCGGATTTA-ACAACTAGCATA
* *
25607736 ATTGCCTTCGGGTCTTAACCCGGATTT----ACTAGCATA
1 AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCATA
* *
25607772 AATGTCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGTCTTAGCCCGGAT
25607797 ATCATTTAAT
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
36 30 0.24
40 93 0.75
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.28
Consensus pattern (40 bp):
AATGCCTTCGGGTCTTAGCCCGGATTTAACAACTAGCATA
Found at i:25615988 original size:29 final size:27
Alignment explanation
Indices: 25615954--25616056 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
25615944 TACTCAATCA
*
25615954 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
25615983 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
25616012 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
25616041 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
25616057 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:25623655 original size:49 final size:47
Alignment explanation
Indices: 25623595--25623799 Score: 293
Period size: 47 Copynumber: 4.3 Consensus size: 47
25623585 GTATGAGATA
* *
25623595 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--GTG
* * *
25623644 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
25623691 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * * *
25623738 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGGAAGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
25623785 TATAAATGTGATAAG
1 TATATATGTGATAAG
25623800 TCCCGAAGGG
Statistics
Matches: 145, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 102 0.70
49 43 0.30
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
Found at i:25626877 original size:24 final size:24
Alignment explanation
Indices: 25626845--25626915 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
25626835 CTGTCAGGAG
25626845 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
25626869 AGGATTTAGGAGTTGATAAAGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
25626893 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
25626916 GGAAATCTAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:25626927 original size:48 final size:47
Alignment explanation
Indices: 25626840--25626939 Score: 112
Period size: 48 Copynumber: 2.1 Consensus size: 47
25626830 AAAGTCTGTC
** * *
25626840 AGGAGAGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGATAA
1 AGGAGAGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATAA
* *
25626888 AGGATAGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCA
1 AGGAGAGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATAA
25626936 AGGA
1 AGGA
25626940 ACAAGAGGTG
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
46 3 0.07
48 41 0.93
ACGTcount: A:0.37, C:0.04, G:0.37, T:0.22
Consensus pattern (47 bp):
AGGAGAGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATAA
Found at i:25628389 original size:27 final size:26
Alignment explanation
Indices: 25628331--25628443 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
25628321 AGGAAGCATC
** *
25628331 CTGGTGGCTAAGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
25628359 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
25628386 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
25628414 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
25628440 CTGG
1 CTGG
25628444 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.51
28 30 0.40
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:25645002 original size:18 final size:18
Alignment explanation
Indices: 25644979--25645071 Score: 125
Period size: 18 Copynumber: 5.2 Consensus size: 18
25644969 TATGACCGTT
25644979 TACGATACTATTCACGTA
1 TACGATACTATTCACGTA
25644997 TACGATACTATTCACGTA
1 TACGATACTATTCACGTA
* * *
25645015 TATGGTACTATTTACGTA
1 TACGATACTATTCACGTA
*
25645033 TACGACACTATTCACGTA
1 TACGATACTATTCACGTA
*
25645051 TAC-AGTACTATTCACATA
1 TACGA-TACTATTCACGTA
25645069 TAC
1 TAC
25645072 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
17 1 0.02
18 64 0.98
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (18 bp):
TACGATACTATTCACGTA
Found at i:25654689 original size:5 final size:6
Alignment explanation
Indices: 25654672--25654698 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
25654662 CAAAATTAAT
25654672 ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATA
25654699 CGAACCGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:25656719 original size:14 final size:14
Alignment explanation
Indices: 25656700--25656729 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25656690 TTATCAAATC
25656700 AACATAAACATCCA
1 AACATAAACATCCA
25656714 AACATAAACATCCA
1 AACATAAACATCCA
25656728 AA
1 AA
25656730 TCCCTATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (14 bp):
AACATAAACATCCA
Found at i:25657047 original size:40 final size:40
Alignment explanation
Indices: 25657010--25657146 Score: 204
Period size: 40 Copynumber: 3.4 Consensus size: 40
25657000 TATAAACAAG
* * *
25657010 GGCATGTAAGTGCATTCAGGGGTACCGAAGTACAAACAGA
1 GGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGA
*
25657050 GGCACGTATGTGCATTCAGGGGTACCAAAGTACAAATA-A
1 GGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGA
* *
25657089 GGGCACGTATGTGCATTGAGGGGTACCAAAGTACAAACAGT
1 -GGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGA
25657130 GGCACGTATGTGCATTC
1 GGCACGTATGTGCATTC
25657147 GTTCAATAGT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 86 0.99
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.20
Consensus pattern (40 bp):
GGCACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGA
Found at i:25657121 original size:80 final size:80
Alignment explanation
Indices: 25656998--25657146 Score: 235
Period size: 80 Copynumber: 1.9 Consensus size: 80
25656988 GAGTTACTGG
* * *
25656998 AGTATAAACAAGGGCATGTAAGTGCATTCAGGGGTACCGAAGTACAAACAGAGGCACGTATGTGC
1 AGTACAAACAAGGGCACGTAAGTGCATTCAGGGGTACCAAAGTACAAACAGAGGCACGTATGTGC
25657063 ATTCAGGGGTACCAA
66 ATTCAGGGGTACCAA
* * * *
25657078 AGTACAAATAAGGGCACGTATGTGCATTGAGGGGTACCAAAGTACAAACAGTGGCACGTATGTGC
1 AGTACAAACAAGGGCACGTAAGTGCATTCAGGGGTACCAAAGTACAAACAGAGGCACGTATGTGC
25657143 ATTC
66 ATTC
25657147 GTTCAATAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 62 1.00
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (80 bp):
AGTACAAACAAGGGCACGTAAGTGCATTCAGGGGTACCAAAGTACAAACAGAGGCACGTATGTGC
ATTCAGGGGTACCAA
Found at i:25669349 original size:31 final size:31
Alignment explanation
Indices: 25669314--25669385 Score: 135
Period size: 31 Copynumber: 2.3 Consensus size: 31
25669304 GGTTAGGGAA
25669314 ACGGGCGTGTGTGTCCACACAGCCTACCTAC
1 ACGGGCGTGTGTGTCCACACAGCCTACCTAC
*
25669345 ACGGGCGTGTGTGTCCACACGGCCTACCTAC
1 ACGGGCGTGTGTGTCCACACAGCCTACCTAC
25669376 ACGGGCGTGT
1 ACGGGCGTGT
25669386 CCCAAAGTCA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (31 bp):
ACGGGCGTGTGTGTCCACACAGCCTACCTAC
Found at i:25678626 original size:2 final size:2
Alignment explanation
Indices: 25678619--25678654 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
25678609 TTTGGAAGTG
*
25678619 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25678655 CATAAGTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:25678659 original size:10 final size:10
Alignment explanation
Indices: 25678620--25678659 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
25678610 TTGGAAGTGT
*
25678620 ATATATATAT
1 ATATATATAA
*
25678630 ATATATATAT
1 ATATATATAA
25678640 ATATATATAA
1 ATATATATAA
*
25678650 ATATACATAA
1 ATATATATAA
25678660 GTATGCCGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (10 bp):
ATATATATAA
Found at i:25679123 original size:29 final size:28
Alignment explanation
Indices: 25679089--25679188 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 28
25679079 GTGACAAGAT
25679089 TGGCACTAAGTGTGCAAGCTTGAAATATA
1 TGGCACTAAGTGTGCAAGCTT-AAATATA
25679118 TGGCACTAAGTGTGCGAA-CTTAAATTATA
1 TGGCACTAAGTGTGC-AAGCTTAAA-TATA
* * *
25679147 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCAAGCTTAAAT-ATA
25679176 TGGCACTAAGTGT
1 TGGCACTAAGTGT
25679189 ACGAAATCGA
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
28 5 0.08
29 56 0.89
30 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCAAGCTTAAATATA
Found at i:25679219 original size:57 final size:57
Alignment explanation
Indices: 25679091--25679226 Score: 150
Period size: 58 Copynumber: 2.4 Consensus size: 57
25679081 GACAAGATTG
* * * * * *
25679091 GCACTAAGTGTGCAAGCTTGAAATATATGGCACTAAGTGTGCGAACTTAAATTATATG
1 GCACTATGTGTGCGAGCTT-AAATACATGGCACTAAGTGTACGAACATAAATTATATA
**
25679149 GCACTATGTGTGCGAGCTTAAATCACATGGCACTAAGTGTACGAA-ATCGATTAT-TAA
1 GCACTATGTGTGCGAGCTTAAAT-ACATGGCACTAAGTGTACGAACATAAATTATAT-A
*
25679206 GCACTATGTGTGCGAACTTAA
1 GCACTATGTGTGCGAGCTTAA
25679227 TGTATATATC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
56 1 0.01
57 30 0.45
58 36 0.54
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (57 bp):
GCACTATGTGTGCGAGCTTAAATACATGGCACTAAGTGTACGAACATAAATTATATA
Found at i:25681890 original size:19 final size:19
Alignment explanation
Indices: 25681866--25681902 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25681856 ACACCTTTGA
*
25681866 AAAACTCCTTCATAACGAT
1 AAAACTCCTTCAGAACGAT
25681885 AAAACTCCTTCAGAACGA
1 AAAACTCCTTCAGAACGA
25681903 CATTCTTCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (19 bp):
AAAACTCCTTCAGAACGAT
Found at i:25681935 original size:13 final size:13
Alignment explanation
Indices: 25681917--25681942 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25681907 CTTCCCAACA
25681917 ATCATGAATTTGG
1 ATCATGAATTTGG
25681930 ATCATGAATTTGG
1 ATCATGAATTTGG
25681943 TATACTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
ATCATGAATTTGG
Found at i:25684012 original size:9 final size:9
Alignment explanation
Indices: 25683998--25686466 Score: 3435
Period size: 9 Copynumber: 275.2 Consensus size: 9
25683988 AGTTCGTGTG
25683998 ATAATAATA
1 ATAATAATA
25684007 ATAATAATA
1 ATAATAATA
25684016 ATAATAATA
1 ATAATAATA
25684025 ATAATAATA
1 ATAATAATA
25684034 ATAATAATA
1 ATAATAATA
25684043 ATAATAATA
1 ATAATAATA
25684052 ATAATAATA
1 ATAATAATA
25684061 ATAATAATA
1 ATAATAATA
*
25684070 ATAATGATA
1 ATAATAATA
*
25684079 ATAATGATA
1 ATAATAATA
*
25684088 ATAATGATA
1 ATAATAATA
*
25684097 ATAATGATA
1 ATAATAATA
25684106 ATAATAATA
1 ATAATAATA
25684115 ATAATAATA
1 ATAATAATA
25684124 ATAATAATA
1 ATAATAATA
25684133 ATAATAATA
1 ATAATAATA
25684142 ATAATAATA
1 ATAATAATA
25684151 ATAATAATA
1 ATAATAATA
25684160 ATAATAATA
1 ATAATAATA
*
25684169 ATAATGATA
1 ATAATAATA
* *
25684178 ATGATAACA
1 ATAATAATA
*
25684187 ATAATGATA
1 ATAATAATA
*
25684196 ATAATAATG
1 ATAATAATA
25684205 ATAATAATA
1 ATAATAATA
* *
25684214 ATGATAATG
1 ATAATAATA
*
25684223 ATAATAATG
1 ATAATAATA
25684232 ATAATAATA
1 ATAATAATA
25684241 ATAATAATA
1 ATAATAATA
25684250 ATAATAATA
1 ATAATAATA
25684259 ATAATAATA
1 ATAATAATA
25684268 ATAATAATA
1 ATAATAATA
25684277 ATAATAATA
1 ATAATAATA
25684286 ATAATAATA
1 ATAATAATA
*
25684295 ATAATAATG
1 ATAATAATA
25684304 ATAATAATA
1 ATAATAATA
*
25684313 ATGATAA-A
1 ATAATAATA
*
25684321 ATAATGATA
1 ATAATAATA
*
25684330 A-AATAATG
1 ATAATAATA
*
25684338 ATAATGATA
1 ATAATAATA
*
25684347 ATAATAATG
1 ATAATAATA
25684356 ATAATAATA
1 ATAATAATA
*
25684365 ATGATAATA
1 ATAATAATA
*
25684374 ATAATGATA
1 ATAATAATA
*
25684383 ATGATAATA
1 ATAATAATA
*
25684392 ATGATAATA
1 ATAATAATA
*
25684401 ATGATAATA
1 ATAATAATA
* *
25684410 ATTATAATG
1 ATAATAATA
*
25684419 ATAATAATT
1 ATAATAATA
*
25684428 ATAATGATA
1 ATAATAATA
*
25684437 ATAATTATA
1 ATAATAATA
*
25684446 ATGATAATA
1 ATAATAATA
*
25684455 ATAATAATG
1 ATAATAATA
*
25684464 ATAATAATT
1 ATAATAATA
*
25684473 ATAATGATA
1 ATAATAATA
25684482 ATAATAATA
1 ATAATAATA
25684491 ATAATAATA
1 ATAATAATA
25684500 ATAATAATA
1 ATAATAATA
25684509 ATAATAATA
1 ATAATAATA
25684518 ATAATAATA
1 ATAATAATA
25684527 ATAATAATA
1 ATAATAATA
25684536 ATAATAATA
1 ATAATAATA
25684545 ATAATAATA
1 ATAATAATA
25684554 ATAATAATA
1 ATAATAATA
25684563 ATAATAATA
1 ATAATAATA
25684572 ATAATAATA
1 ATAATAATA
* *
25684581 ATGATAATG
1 ATAATAATA
*
25684590 ATGATAATA
1 ATAATAATA
25684599 ATAATAATA
1 ATAATAATA
25684608 ATAATAATA
1 ATAATAATA
25684617 ATAATAATA
1 ATAATAATA
* *
25684626 ATGATAATG
1 ATAATAATA
*
25684635 ATGATAATA
1 ATAATAATA
25684644 ATAATAATA
1 ATAATAATA
*
25684653 ATGATAATA
1 ATAATAATA
* *
25684662 ATGATAATG
1 ATAATAATA
25684671 ATAATAATA
1 ATAATAATA
25684680 ATAATAATA
1 ATAATAATA
25684689 ATAATAATA
1 ATAATAATA
25684698 ATAATAATA
1 ATAATAATA
*
25684707 ATAATGATA
1 ATAATAATA
25684716 ATAATAATA
1 ATAATAATA
25684725 ATAATAATA
1 ATAATAATA
25684734 ATAATAATA
1 ATAATAATA
25684743 ATAATAATA
1 ATAATAATA
25684752 ATAATAATA
1 ATAATAATA
25684761 ATAATAATA
1 ATAATAATA
*
25684770 ATAATGATA
1 ATAATAATA
*
25684779 ATAATGATA
1 ATAATAATA
*
25684788 ATGATAATA
1 ATAATAATA
*
25684797 ATGATAA-A
1 ATAATAATA
*
25684805 ATAATGATA
1 ATAATAATA
*
25684814 ATGATAATA
1 ATAATAATA
*
25684823 ATAATGATA
1 ATAATAATA
*
25684832 ATAATAATG
1 ATAATAATA
25684841 ATAATAATA
1 ATAATAATA
*
25684850 ATGATAATA
1 ATAATAATA
*
25684859 ATAATAATG
1 ATAATAATA
25684868 ATAATAATA
1 ATAATAATA
*
25684877 ATAATGATA
1 ATAATAATA
*
25684886 ATAATGATA
1 ATAATAATA
*
25684895 ATGATAATA
1 ATAATAATA
25684904 ATAATAATA
1 ATAATAATA
*
25684913 ATAATGATA
1 ATAATAATA
*
25684922 ATAATGATA
1 ATAATAATA
*
25684931 ATGATAATA
1 ATAATAATA
*
25684940 ATGATAA-A
1 ATAATAATA
*
25684948 ATAATGATA
1 ATAATAATA
*
25684957 ATGATAATA
1 ATAATAATA
*
25684966 ATAATGATA
1 ATAATAATA
*
25684975 ATAATAATG
1 ATAATAATA
25684984 ATAATAATA
1 ATAATAATA
*
25684993 ATGATAATA
1 ATAATAATA
25685002 ATAATAATA
1 ATAATAATA
25685011 ATAATAATA
1 ATAATAATA
25685020 ATAATAATA
1 ATAATAATA
25685029 ATAATAATA
1 ATAATAATA
*
25685038 ATAATAATG
1 ATAATAATA
25685047 ATAATAATA
1 ATAATAATA
25685056 ATAATAATA
1 ATAATAATA
25685065 ATAATAATA
1 ATAATAATA
25685074 ATAATAATA
1 ATAATAATA
25685083 ATAATAATA
1 ATAATAATA
25685092 ATAATAATA
1 ATAATAATA
25685101 ATAATAATA
1 ATAATAATA
25685110 ATAATAATA
1 ATAATAATA
25685119 ATAATAATA
1 ATAATAATA
*
25685128 ATAATGATA
1 ATAATAATA
*
25685137 A-AATAATG
1 ATAATAATA
*
25685145 ATAATGATA
1 ATAATAATA
*
25685154 ATGATAATA
1 ATAATAATA
*
25685163 ATAATGATA
1 ATAATAATA
*
25685172 ATGATAATA
1 ATAATAATA
*
25685181 ATGATAATA
1 ATAATAATA
* *
25685190 ATGATAATG
1 ATAATAATA
25685199 ATAATAATA
1 ATAATAATA
25685208 ATAATAATA
1 ATAATAATA
25685217 ATAATAATA
1 ATAATAATA
25685226 ATAATAATA
1 ATAATAATA
25685235 ATAATAATA
1 ATAATAATA
25685244 ATAATAATA
1 ATAATAATA
25685253 ATAATAATA
1 ATAATAATA
25685262 ATAATAATA
1 ATAATAATA
25685271 ATAATAATA
1 ATAATAATA
25685280 ATAATAATA
1 ATAATAATA
25685289 ATAATAA-A
1 ATAATAATA
*
25685297 ATAATGATA
1 ATAATAATA
*
25685306 ATGATAATA
1 ATAATAATA
*
25685315 ATGATAATA
1 ATAATAATA
*
25685324 ATAATGATA
1 ATAATAATA
*
25685333 ATGATAATA
1 ATAATAATA
*
25685342 ATGATAATA
1 ATAATAATA
*
25685351 ATGATAATA
1 ATAATAATA
* *
25685360 ATTATAATG
1 ATAATAATA
*
25685369 ATAATAATT
1 ATAATAATA
*
25685378 ATAATGATA
1 ATAATAATA
*
25685387 ATAATTATA
1 ATAATAATA
*
25685396 ATGATAATA
1 ATAATAATA
*
25685405 ATAATAATG
1 ATAATAATA
25685414 ATAATAATA
1 ATAATAATA
* *
25685423 ATGATAATG
1 ATAATAATA
*
25685432 ATAATAATG
1 ATAATAATA
*
25685441 ATAATAATG
1 ATAATAATA
*
25685450 ATAATAATT
1 ATAATAATA
*
25685459 ATAATGATA
1 ATAATAATA
*
25685468 ATAATTATA
1 ATAATAATA
*
25685477 ATGATAATA
1 ATAATAATA
25685486 ATAATAATA
1 ATAATAATA
*
25685495 ATAATAATG
1 ATAATAATA
*
25685504 ATAATGATA
1 ATAATAATA
*
25685513 ATAATAATG
1 ATAATAATA
*
25685522 ATAATAATG
1 ATAATAATA
*
25685531 ATAATAATG
1 ATAATAATA
*
25685540 ATGATAATA
1 ATAATAATA
25685549 ATAATAATA
1 ATAATAATA
25685558 ATAATAATA
1 ATAATAATA
25685567 ATAATAATA
1 ATAATAATA
25685576 ATAATAATA
1 ATAATAATA
25685585 ATAATAATA
1 ATAATAATA
25685594 ATAATAATA
1 ATAATAATA
25685603 ATAATAATA
1 ATAATAATA
25685612 ATAATAATA
1 ATAATAATA
25685621 ATAATAATA
1 ATAATAATA
25685630 AT-ATAATA
1 ATAATAATA
* *
25685638 ATGATAATG
1 ATAATAATA
*
25685647 ATAATGATA
1 ATAATAATA
25685656 ATAATAATA
1 ATAATAATA
25685665 ATAATAATA
1 ATAATAATA
25685674 ATAATAATA
1 ATAATAATA
25685683 ATAATAATA
1 ATAATAATA
25685692 ATAATAATA
1 ATAATAATA
25685701 ATAATAATA
1 ATAATAATA
25685710 ATAATAATA
1 ATAATAATA
25685719 ATAATAAATA
1 ATAAT-AATA
25685729 ATAATAATA
1 ATAATAATA
*
25685738 ATGATAATA
1 ATAATAATA
25685747 ATAATAATA
1 ATAATAATA
25685756 ATAATAATA
1 ATAATAATA
25685765 ATAATAATA
1 ATAATAATA
25685774 ATAATAATA
1 ATAATAATA
25685783 ATAATAATA
1 ATAATAATA
25685792 ATAATAATA
1 ATAATAATA
25685801 ATAATAATA
1 ATAATAATA
25685810 ATAATAATA
1 ATAATAATA
*
25685819 AAAATAA-A
1 ATAATAATA
*
25685827 ATAATGATA
1 ATAATAATA
*
25685836 ATGATAATA
1 ATAATAATA
*
25685845 ATAATGATA
1 ATAATAATA
*
25685854 ATAATAATG
1 ATAATAATA
25685863 ATAATAATA
1 ATAATAATA
* *
25685872 ATGATAATG
1 ATAATAATA
*
25685881 ATAATAATG
1 ATAATAATA
*
25685890 ATAATAATG
1 ATAATAATA
*
25685899 ATAATGATA
1 ATAATAATA
*
25685908 ATAATGATA
1 ATAATAATA
*
25685917 ATAATTATA
1 ATAATAATA
*
25685926 ATGATAATA
1 ATAATAATA
* *
25685935 ATTATAATG
1 ATAATAATA
*
25685944 ATAATAATT
1 ATAATAATA
*
25685953 ATAATGATA
1 ATAATAATA
25685962 ATAATAATA
1 ATAATAATA
*
25685971 ATGATAATA
1 ATAATAATA
*
25685980 ATAATGATA
1 ATAATAATA
*
25685989 ATGATAATA
1 ATAATAATA
*
25685998 ATGATAATA
1 ATAATAATA
*
25686007 ATGATAATA
1 ATAATAATA
* *
25686016 ATTATAATG
1 ATAATAATA
*
25686025 ATAATAATT
1 ATAATAATA
*
25686034 ATAATGATA
1 ATAATAATA
25686043 ATAATAATA
1 ATAATAATA
25686052 ATAATAATA
1 ATAATAATA
25686061 ATAATAATA
1 ATAATAATA
*
25686070 ATTATAATA
1 ATAATAATA
* *
25686079 ATTATAATG
1 ATAATAATA
*
25686088 ATAATAATT
1 ATAATAATA
*
25686097 ATAATAATT
1 ATAATAATA
*
25686106 ATAATGATA
1 ATAATAATA
25686115 ATAATAATA
1 ATAATAATA
25686124 ATAATAATA
1 ATAATAATA
25686133 ATAATAATA
1 ATAATAATA
25686142 ATAATAATA
1 ATAATAATA
* *
25686151 ATTATAATG
1 ATAATAATA
*
25686160 ATAATAATG
1 ATAATAATA
*
25686169 ATAATAATT
1 ATAATAATA
**
25686178 ATAATGGTA
1 ATAATAATA
25686187 ATAATAATA
1 ATAATAATA
25686196 ATAATAATA
1 ATAATAATA
25686205 ATAATAATA
1 ATAATAATA
25686214 ATAATAATA
1 ATAATAATA
25686223 ATAATAATA
1 ATAATAATA
25686232 ATAATAATA
1 ATAATAATA
25686241 ATAATAATA
1 ATAATAATA
25686250 ATAATAA-A
1 ATAATAATA
*
25686258 ATAATGATA
1 ATAATAATA
*
25686267 ATGATAATA
1 ATAATAATA
*
25686276 ATAATGATA
1 ATAATAATA
*
25686285 ATAATAATG
1 ATAATAATA
25686294 ATAATAATA
1 ATAATAATA
** *
25686303 ACGATAATG
1 ATAATAATA
*
25686312 ATAATAATG
1 ATAATAATA
*
25686321 ATAATAATG
1 ATAATAATA
*
25686330 ATAATAATT
1 ATAATAATA
*
25686339 ATAATAATT
1 ATAATAATA
*
25686348 ATAATGATA
1 ATAATAATA
*
25686357 ATAATTATA
1 ATAATAATA
*
25686366 ATGATAATA
1 ATAATAATA
25686375 ATAATAATA
1 ATAATAATA
25686384 ATAATAATA
1 ATAATAATA
25686393 ATAATAATA
1 ATAATAATA
25686402 ATAATAATA
1 ATAATAATA
25686411 ATAATAATA
1 ATAATAATA
25686420 ATAATAATA
1 ATAATAATA
25686429 ATAATAATA
1 ATAATAATA
25686438 ATAATAATA
1 ATAATAATA
25686447 ATAATAATA
1 ATAATAATA
*
25686456 ATAATGATA
1 ATAATAATA
25686465 AT
1 AT
25686467 GTAATGCCAT
Statistics
Matches: 2220, Mismatches: 230, Indels: 20
0.90 0.09 0.01
Matches are distributed among these distances:
8 58 0.03
9 2153 0.97
10 9 0.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (9 bp):
ATAATAATA
Found at i:25684018 original size:15 final size:15
Alignment explanation
Indices: 25683998--25686466 Score: 3435
Period size: 15 Copynumber: 165.1 Consensus size: 15
25683988 AGTTCGTGTG
25683998 ATAATAATAATAATA
1 ATAATAATAATAATA
25684013 ATAATAATAATAATA
1 ATAATAATAATAATA
25684028 ATAATAATAATAATA
1 ATAATAATAATAATA
25684043 ATAATAATAATAATA
1 ATAATAATAATAATA
25684058 ATAATAATAATAATA
1 ATAATAATAATAATA
* *
25684073 ATGATAATAATGATA
1 ATAATAATAATAATA
* *
25684088 ATAATGATAATAATG
1 ATAATAATAATAATA
25684103 ATAATAATAATAATA
1 ATAATAATAATAATA
25684118 ATAATAATAATAATA
1 ATAATAATAATAATA
25684133 ATAATAATAATAATA
1 ATAATAATAATAATA
25684148 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25684163 ATAATAATAATGATA
1 ATAATAATAATAATA
* * *
25684178 ATGATAACAATAATG
1 ATAATAATAATAATA
*
25684193 ATAATAATAATGATA
1 ATAATAATAATAATA
* *
25684208 ATAATAATGATAATG
1 ATAATAATAATAATA
*
25684223 ATAATAATGATAATA
1 ATAATAATAATAATA
25684238 ATAATAATAATAATA
1 ATAATAATAATAATA
25684253 ATAATAATAATAATA
1 ATAATAATAATAATA
25684268 ATAATAATAATAATA
1 ATAATAATAATAATA
25684283 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25684298 ATAATGATAATAATA
1 ATAATAATAATAATA
* *
25684313 ATGATAA-AATAATG
1 ATAATAATAATAATA
*
25684327 ATAA-AATAATGATA
1 ATAATAATAATAATA
* *
25684341 ATGATAATAATAATG
1 ATAATAATAATAATA
*
25684356 ATAATAATAATGATA
1 ATAATAATAATAATA
* *
25684371 ATAATAATGATAATG
1 ATAATAATAATAATA
*
25684386 ATAATAATGATAATA
1 ATAATAATAATAATA
* *
25684401 ATGATAATAATTATA
1 ATAATAATAATAATA
* *
25684416 ATGATAATAATTATA
1 ATAATAATAATAATA
* *
25684431 ATGATAATAATTATA
1 ATAATAATAATAATA
*
25684446 ATGATAATAATAATA
1 ATAATAATAATAATA
* *
25684461 ATGATAATAATTATA
1 ATAATAATAATAATA
*
25684476 ATGATAATAATAATA
1 ATAATAATAATAATA
25684491 ATAATAATAATAATA
1 ATAATAATAATAATA
25684506 ATAATAATAATAATA
1 ATAATAATAATAATA
25684521 ATAATAATAATAATA
1 ATAATAATAATAATA
25684536 ATAATAATAATAATA
1 ATAATAATAATAATA
25684551 ATAATAATAATAATA
1 ATAATAATAATAATA
25684566 ATAATAATAATAATA
1 ATAATAATAATAATA
* * *
25684581 ATGATAATGATGATA
1 ATAATAATAATAATA
25684596 ATAATAATAATAATA
1 ATAATAATAATAATA
25684611 ATAATAATAATAATA
1 ATAATAATAATAATA
* * *
25684626 ATGATAATGATGATA
1 ATAATAATAATAATA
*
25684641 ATAATAATAATAATG
1 ATAATAATAATAATA
* *
25684656 ATAATAATGATAATG
1 ATAATAATAATAATA
25684671 ATAATAATAATAATA
1 ATAATAATAATAATA
25684686 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25684701 ATAATAATAATGATA
1 ATAATAATAATAATA
25684716 ATAATAATAATAATA
1 ATAATAATAATAATA
25684731 ATAATAATAATAATA
1 ATAATAATAATAATA
25684746 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25684761 ATAATAATAATAATG
1 ATAATAATAATAATA
* *
25684776 ATAATAATGATAATG
1 ATAATAATAATAATA
*
25684791 ATAATAATGATAA-A
1 ATAATAATAATAATA
* *
25684805 ATAATGATAATGATA
1 ATAATAATAATAATA
*
25684820 ATAATAATGATAATA
1 ATAATAATAATAATA
*
25684835 ATAATGATAATAATA
1 ATAATAATAATAATA
*
25684850 ATGATAATAATAATA
1 ATAATAATAATAATA
*
25684865 ATGATAATAATAATA
1 ATAATAATAATAATA
* *
25684880 ATGATAATAATGATA
1 ATAATAATAATAATA
*
25684895 ATGATAATAATAATA
1 ATAATAATAATAATA
*
25684910 ATAATAATGATAATA
1 ATAATAATAATAATA
* *
25684925 ATGATAATGATAATA
1 ATAATAATAATAATA
* *
25684940 ATGATAA-AATAATG
1 ATAATAATAATAATA
*
25684954 ATAATGATAATAATA
1 ATAATAATAATAATA
* *
25684969 ATGATAATAATAATG
1 ATAATAATAATAATA
*
25684984 ATAATAATAATGATA
1 ATAATAATAATAATA
25684999 ATAATAATAATAATA
1 ATAATAATAATAATA
25685014 ATAATAATAATAATA
1 ATAATAATAATAATA
25685029 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25685044 ATGATAATAATAATA
1 ATAATAATAATAATA
25685059 ATAATAATAATAATA
1 ATAATAATAATAATA
25685074 ATAATAATAATAATA
1 ATAATAATAATAATA
25685089 ATAATAATAATAATA
1 ATAATAATAATAATA
25685104 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25685119 ATAATAATAATAATG
1 ATAATAATAATAATA
*
25685134 ATAA-AATAATGATA
1 ATAATAATAATAATA
* *
25685148 ATGATAATGATAATA
1 ATAATAATAATAATA
* *
25685163 ATAATGATAATGATA
1 ATAATAATAATAATA
* *
25685178 ATAATGATAATAATG
1 ATAATAATAATAATA
*
25685193 ATAATGATAATAATA
1 ATAATAATAATAATA
25685208 ATAATAATAATAATA
1 ATAATAATAATAATA
25685223 ATAATAATAATAATA
1 ATAATAATAATAATA
25685238 ATAATAATAATAATA
1 ATAATAATAATAATA
25685253 ATAATAATAATAATA
1 ATAATAATAATAATA
25685268 ATAATAATAATAATA
1 ATAATAATAATAATA
25685283 ATAATAATAATAA-A
1 ATAATAATAATAATA
* *
25685297 ATAATGATAATGATA
1 ATAATAATAATAATA
*
25685312 ATAATGATAATAATA
1 ATAATAATAATAATA
* *
25685327 ATGATAATGATAATA
1 ATAATAATAATAATA
* *
25685342 ATGATAATAATGATA
1 ATAATAATAATAATA
* *
25685357 ATAATTATAATGATA
1 ATAATAATAATAATA
* *
25685372 ATAATTATAATGATA
1 ATAATAATAATAATA
* *
25685387 ATAATTATAATGATA
1 ATAATAATAATAATA
*
25685402 ATAATAATAATGATA
1 ATAATAATAATAATA
* *
25685417 ATAATAATGATAATG
1 ATAATAATAATAATA
*
25685432 ATAATAATGATAATA
1 ATAATAATAATAATA
* *
25685447 ATGATAATAATTATA
1 ATAATAATAATAATA
* *
25685462 ATGATAATAATTATA
1 ATAATAATAATAATA
*
25685477 ATGATAATAATAATA
1 ATAATAATAATAATA
*
25685492 ATAATAATAATGATA
1 ATAATAATAATAATA
* *
25685507 ATGATAATAATAATG
1 ATAATAATAATAATA
*
25685522 ATAATAATGATAATA
1 ATAATAATAATAATA
* *
25685537 ATGATGATAATAATA
1 ATAATAATAATAATA
25685552 ATAATAATAATAATA
1 ATAATAATAATAATA
25685567 ATAATAATAATAATA
1 ATAATAATAATAATA
25685582 ATAATAATAATAATA
1 ATAATAATAATAATA
25685597 ATAATAATAATAATA
1 ATAATAATAATAATA
25685612 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25685627 ATAAT-ATAATAATG
1 ATAATAATAATAATA
* *
25685641 ATAATGATAATGATA
1 ATAATAATAATAATA
25685656 ATAATAATAATAATA
1 ATAATAATAATAATA
25685671 ATAATAATAATAATA
1 ATAATAATAATAATA
25685686 ATAATAATAATAATA
1 ATAATAATAATAATA
25685701 ATAATAATAATAATA
1 ATAATAATAATAATA
25685716 ATAATAATAAATAATA
1 ATAATAAT-AATAATA
*
25685732 ATAATAATGATAATA
1 ATAATAATAATAATA
25685747 ATAATAATAATAATA
1 ATAATAATAATAATA
25685762 ATAATAATAATAATA
1 ATAATAATAATAATA
25685777 ATAATAATAATAATA
1 ATAATAATAATAATA
25685792 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25685807 ATAATAATAATAAAA
1 ATAATAATAATAATA
*
25685822 ATAA-AATAATGATA
1 ATAATAATAATAATA
* *
25685836 ATGATAATAATAATG
1 ATAATAATAATAATA
*
25685851 ATAATAATAATGATA
1 ATAATAATAATAATA
* *
25685866 ATAATAATGATAATG
1 ATAATAATAATAATA
*
25685881 ATAATAATGATAATA
1 ATAATAATAATAATA
* *
25685896 ATGATAATGATAATA
1 ATAATAATAATAATA
* *
25685911 ATGATAATAATTATA
1 ATAATAATAATAATA
* *
25685926 ATGATAATAATTATA
1 ATAATAATAATAATA
* *
25685941 ATGATAATAATTATA
1 ATAATAATAATAATA
*
25685956 ATGATAATAATAATA
1 ATAATAATAATAATA
* *
25685971 ATGATAATAATAATG
1 ATAATAATAATAATA
* *
25685986 ATAATGATAATAATG
1 ATAATAATAATAATA
*
25686001 ATAATAATGATAATA
1 ATAATAATAATAATA
* *
25686016 ATTATAATGATAATA
1 ATAATAATAATAATA
* *
25686031 ATTATAATGATAATA
1 ATAATAATAATAATA
25686046 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25686061 ATAATAATAATTATA
1 ATAATAATAATAATA
* *
25686076 ATAATTATAATGATA
1 ATAATAATAATAATA
* *
25686091 ATAATTATAATAATT
1 ATAATAATAATAATA
*
25686106 ATAATGATAATAATA
1 ATAATAATAATAATA
25686121 ATAATAATAATAATA
1 ATAATAATAATAATA
25686136 ATAATAATAATAATA
1 ATAATAATAATAATA
* *
25686151 ATTATAATGATAATA
1 ATAATAATAATAATA
* *
25686166 ATGATAATAATTATA
1 ATAATAATAATAATA
**
25686181 ATGGTAATAATAATA
1 ATAATAATAATAATA
25686196 ATAATAATAATAATA
1 ATAATAATAATAATA
25686211 ATAATAATAATAATA
1 ATAATAATAATAATA
25686226 ATAATAATAATAATA
1 ATAATAATAATAATA
25686241 ATAATAATAATAATA
1 ATAATAATAATAATA
* *
25686256 A-AATAATGATAATG
1 ATAATAATAATAATA
*
25686270 ATAATAATAATGATA
1 ATAATAATAATAATA
*
25686285 ATAATAATGATAATA
1 ATAATAATAATAATA
** *
25686300 ATAACGATAATGATA
1 ATAATAATAATAATA
* *
25686315 ATAATGATAATAATG
1 ATAATAATAATAATA
*
25686330 ATAATAATTATAATA
1 ATAATAATAATAATA
* *
25686345 ATTATAATGATAATA
1 ATAATAATAATAATA
* *
25686360 ATTATAATGATAATA
1 ATAATAATAATAATA
25686375 ATAATAATAATAATA
1 ATAATAATAATAATA
25686390 ATAATAATAATAATA
1 ATAATAATAATAATA
25686405 ATAATAATAATAATA
1 ATAATAATAATAATA
25686420 ATAATAATAATAATA
1 ATAATAATAATAATA
25686435 ATAATAATAATAATA
1 ATAATAATAATAATA
*
25686450 ATAATAATAATGATA
1 ATAATAATAATAATA
25686465 AT
1 AT
25686467 GTAATGCCAT
Statistics
Matches: 2230, Mismatches: 214, Indels: 20
0.91 0.09 0.01
Matches are distributed among these distances:
13 2 0.00
14 96 0.04
15 2117 0.95
16 15 0.01
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (15 bp):
ATAATAATAATAATA
Found at i:25686467 original size:6 final size:6
Alignment explanation
Indices: 25683998--25686466 Score: 3435
Period size: 6 Copynumber: 412.8 Consensus size: 6
25683988 AGTTCGTGTG
25683998 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25684046 ATAATA ATAATA ATAATA ATAATA ATAATG ATAATA ATGATA ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
*
25684094 ATAATA ATGATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25684142 ATAATA ATAATA ATAATA ATAATA ATAATA ATGATA ATGATA ACAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25684190 ATGATA ATAATA ATGATA ATAATA ATGATA ATGATA ATAATG ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25684238 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25684286 ATAATA ATAATA ATAATG ATAATA ATAATG ATAA-A ATAATG ATAA-A
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25684332 ATAATG ATAATG ATAATA ATAATG ATAATA ATAATG ATAATA ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * * *
25684380 ATAATG ATAATA ATGATA ATAATG ATAATA ATTATA ATGATA ATAATT
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25684428 ATAATG ATAATA ATTATA ATGATA ATAATA ATAATG ATAATA ATTATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
*
25684476 ATGATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25684524 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25684572 ATAATA ATAATG ATAATG ATGATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25684620 ATAATA ATGATA ATGATG ATAATA ATAATA ATAATG ATAATA ATGATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* *
25684668 ATGATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATGATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25684716 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25684764 ATAATA ATAATG ATAATA ATGATA ATGATA ATAATG ATAA-A ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25684811 ATAATG ATAATA ATAATG ATAATA ATAATG ATAATA ATAATG ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25684859 ATAATA ATGATA ATAATA ATAATG ATAATA ATGATA ATGATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25684907 ATAATA ATAATG ATAATA ATGATA ATGATA ATAATG ATAA-A ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25684954 ATAATG ATAATA ATAATG ATAATA ATAATG ATAATA ATAATG ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
*
25685002 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATGATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25685050 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* *
25685098 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATG ATAA-A ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * * *
25685145 ATAATG ATAATG ATAATA ATAATG ATAATG ATAATA ATGATA ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
*
25685193 ATAATG ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25685241 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25685289 ATAATA A-AATA ATGATA ATGATA ATAATG ATAATA ATAATG ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * * *
25685336 ATAATA ATGATA ATAATG ATAATA ATTATA ATGATA ATAATT ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25685384 ATAATA ATTATA ATGATA ATAATA ATAATG ATAATA ATAATG ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * * *
25685432 ATAATA ATGATA ATAATG ATAATA ATTATA ATGATA ATAATT ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25685480 ATAATA ATAATA ATAATA ATAATG ATAATG ATAATA ATAATG ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25685528 ATGATA ATAATG ATGATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25685576 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
25685624 ATAATA AT-ATA ATAATG ATAATG ATAATG ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25685671 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
*
25685719 ATAATAA ATAATA ATAATA ATGATA ATAATA ATAATA ATAATA ATAATA
1 ATAAT-A ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25685768 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25685816 ATAAAA ATAA-A ATAATG ATAATG ATAATA ATAATG ATAATA ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25685863 ATAATA ATAATG ATAATG ATAATA ATGATA ATAATG ATAATG ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * * * *
25685911 ATGATA ATAATT ATAATG ATAATA ATTATA ATGATA ATAATT ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25685959 ATAATA ATAATA ATGATA ATAATA ATGATA ATGATA ATAATG ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * *
25686007 ATGATA ATAATT ATAATG ATAATA ATTATA ATGATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25686055 ATAATA ATAATA ATAATT ATAATA ATTATA ATGATA ATAATT ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* *
25686103 ATTATA ATGATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * * **
25686151 ATTATA ATGATA ATAATG ATAATA ATTATA ATGGTA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25686199 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25686247 ATAATA ATAA-A ATAATG ATAATG ATAATA ATAATG ATAATA ATAATG
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
** * * * *
25686294 ATAATA ATAACG ATAATG ATAATA ATGATA ATAATG ATAATA ATTATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * * *
25686342 ATAATT ATAATG ATAATA ATTATA ATGATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
25686390 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
*
25686438 ATAATA ATAATA ATAATA ATAATG ATAAT
1 ATAATA ATAATA ATAATA ATAATA ATAAT
25686467 GTAATGCCAT
Statistics
Matches: 2213, Mismatches: 240, Indels: 20
0.89 0.10 0.01
Matches are distributed among these distances:
5 40 0.02
6 2167 0.98
7 6 0.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (6 bp):
ATAATA
Found at i:25687006 original size:48 final size:48
Alignment explanation
Indices: 25686895--25687117 Score: 279
Period size: 48 Copynumber: 4.6 Consensus size: 48
25686885 ATGAGATCCC
* * * * * *
25686895 GTGTAAGACCATGTTTGGGACATGGCGTCGGCATCCGAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGTGTGCCA
*
25686944 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCA
* * * *
25686992 GTGTAAGACCATGTCTGGGACATGGCATTGGTATTGATATTTGTCCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCA
* *
25687040 GTGTAAGACCATGTCTGGGACATGGCATCGGTGA-TGATATGTGTGCAA
1 GTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGTGTGCCA
*
25687088 GTGTAAGACCATGT-TGGGGGCATGGCATCG
1 GTGTAAGACCATGTCT-GGGACATGGCATCG
25687118 TCACCGATAT
Statistics
Matches: 154, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 121 0.79
49 32 0.21
ACGTcount: A:0.23, C:0.17, G:0.33, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCA
Found at i:25693699 original size:95 final size:95
Alignment explanation
Indices: 25693503--25693773 Score: 332
Period size: 95 Copynumber: 2.8 Consensus size: 95
25693493 TGAGATCCCA
* * * * * ** *
25693503 TGTAAGATCATGTTTGGGACATGGCATCAGC-ATCCGAGATGAGAGCCAGTGTAAGACCACGTCT
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATGTGTCCCAGTGTAAGACCATGTCT
25693567 GGGACATGGCATCGACGTTGATATGTGTGCCAG
64 GGGACAT-GCATCGACGTTGATATGTGTGCCAG
* *
25693600 TGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTCCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTCCCAGTGTAAGACCATGTCTGG
**
25693665 GACATGCATCGGTGTTGATATGTGT-CACAG
66 GACATGCATCGACGTTGATATGTGTGC-CAG
* * *
25693695 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTAGTGCAAGACCATGTC-GG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTCCCAGTGTAAGACCATGTCTGG
25693759 GAGCATGTCATCGAC
66 GA-CATG-CATCGAC
25693774 ACCGATATGA
Statistics
Matches: 151, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
94 5 0.03
95 82 0.54
96 36 0.24
97 27 0.18
98 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTCCCAGTGTAAGACCATGTCTGG
GACATGCATCGACGTTGATATGTGTGCCAG
Found at i:25693782 original size:48 final size:48
Alignment explanation
Indices: 25693503--25693771 Score: 337
Period size: 48 Copynumber: 5.6 Consensus size: 48
25693493 TGAGATCCCA
* * * * * * * *
25693503 TGTAAGATCATGTTTGGGACATGGCATCAGCATCCGAGATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGT-TGATATGTGTGCCAG
* *
25693552 TGTAAGACCACGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* *
25693600 TGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTCCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
*
25693648 TGTAAGACCATGTCTGGGACAT-GCATCGGTGTTGATATGTGT-CACAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGC-CAG
* *
25693695 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
* *
25693743 TGCAAGACCATGTC-GGGAGCATGTCATCG
1 TGTAAGACCATGTCTGGGA-CATGGCATCG
25693772 ACACCGATAT
Statistics
Matches: 197, Mismatches: 19, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
46 1 0.01
47 49 0.25
48 119 0.60
49 28 0.14
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCAG
Found at i:25693809 original size:143 final size:143
Alignment explanation
Indices: 25693549--25693809 Score: 328
Period size: 143 Copynumber: 1.8 Consensus size: 143
25693539 AGATGAGAGC
* *
25693549 CAGTGTAAGACCACGTCTGGGACATGGCATCGACGTTGATATGTGTGCCAGTGTAAGACCATGTC
1 CAGTGTAAGACCACGTCTGGGACATGGCATCGACGATGATATGTGTGCCAGTGCAAGACCATGTC
***** * * * *
25693614 TGGGACATGGCATCGGTGTTGATATGTGTCCCAGTGTAAGACCATGTCTGGGACATGCATCGGTG
66 TGGGACATGGCATCGACACCGATATGAGGCCCAGTATAAGACCATATCTGGGACATGCATCGGTG
25693679 TTGATATGTGTCA
131 TTGATATGTGTCA
* * *
25693692 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATGTGTGCTAGTGCAAGACCATGTC
1 CAGTGTAAGACCACGTCTGGGACATGGCATCGACGATGATATGTGTGCCAGTGCAAGACCATGTC
* * * *
25693757 -GGGAGCATGTCATCGACACCGATATGAGGCTTC-GTATAAGACCTTATTTGGGA
66 TGGGA-CATGGCATCGACACCGATATGAGGC-CCAGTATAAGACCATATCTGGGA
25693810 TATGGCGTCC
Statistics
Matches: 98, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
142 4 0.04
143 93 0.95
144 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (143 bp):
CAGTGTAAGACCACGTCTGGGACATGGCATCGACGATGATATGTGTGCCAGTGCAAGACCATGTC
TGGGACATGGCATCGACACCGATATGAGGCCCAGTATAAGACCATATCTGGGACATGCATCGGTG
TTGATATGTGTCA
Found at i:25693827 original size:20 final size:20
Alignment explanation
Indices: 25693798--25693838 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
25693788 TCGTATAAGA
*
25693798 CCTTATTTGGGATATGGCGT
1 CCTTAGTTGGGATATGGCGT
25693818 CCTTAGTTGGGATATGGCGT
1 CCTTAGTTGGGATATGGCGT
25693838 C
1 C
25693839 GACATGTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.17, G:0.32, T:0.37
Consensus pattern (20 bp):
CCTTAGTTGGGATATGGCGT
Found at i:25701593 original size:34 final size:34
Alignment explanation
Indices: 25701550--25701620 Score: 133
Period size: 34 Copynumber: 2.1 Consensus size: 34
25701540 TATGACTAGA
*
25701550 AGAAACCCGTCAGGATCATTACTTTTTGATAGTG
1 AGAAACCCGTCAAGATCATTACTTTTTGATAGTG
25701584 AGAAACCCGTCAAGATCATTACTTTTTGATAGTG
1 AGAAACCCGTCAAGATCATTACTTTTTGATAGTG
25701618 AGA
1 AGA
25701621 TTGAACACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (34 bp):
AGAAACCCGTCAAGATCATTACTTTTTGATAGTG
Found at i:25735448 original size:26 final size:26
Alignment explanation
Indices: 25735419--25735526 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
25735409 TGATACAAAT
25735419 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
25735445 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25735471 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
25735497 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
25735523 TGAT
1 TGAT
25735527 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:25737223 original size:54 final size:54
Alignment explanation
Indices: 25737141--25737284 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
25737131 TGGAGGAAGC
25737141 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
25737195 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
25737249 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
25737285 ACTTCGTCAC
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:25737295 original size:27 final size:27
Alignment explanation
Indices: 25737144--25737302 Score: 193
Period size: 27 Copynumber: 5.9 Consensus size: 27
25737134 AGGAAGCGTC
*
25737144 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
25737171 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
25737198 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
25737225 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
25737252 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
25737279 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
25737303 GCAGCCTCGC
Statistics
Matches: 117, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
26 10 0.09
27 105 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:25737296 original size:81 final size:80
Alignment explanation
Indices: 25737144--25737302 Score: 216
Period size: 81 Copynumber: 2.0 Consensus size: 80
25737134 AGGAAGCGTC
*
25737144 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
25737209 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
25737225 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
25737288 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
25737303 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 17 0.24
81 53 0.76
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:25745607 original size:31 final size:32
Alignment explanation
Indices: 25745572--25745632 Score: 99
Period size: 31 Copynumber: 1.9 Consensus size: 32
25745562 AACATCTTAT
25745572 AAATATCTTTT-ACTAATTAATA-ATAAATATA
1 AAATATCTTTTCACTAATT-ATACATAAATATA
25745603 AAATATCTTTTCACTAATTATACATAAATA
1 AAATATCTTTTCACTAATTATACATAAATA
25745633 ATACAAATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (32 bp):
AAATATCTTTTCACTAATTATACATAAATATA
Found at i:25745750 original size:3 final size:3
Alignment explanation
Indices: 25745742--25745778 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
25745732 AATTATAGCT
25745742 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
25745779 TTTTTACTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:25749830 original size:28 final size:27
Alignment explanation
Indices: 25749764--25749833 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
25749754 ATAGTGAGTC
**
25749764 CGCACACTTAGTGCTATATAATCTGCT
1 CGCACACTTAGTGCTATATAATCAACT
*
25749791 CGCACACTTAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATC-AACT
25749819 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25749834 GTACAAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:25758664 original size:41 final size:40
Alignment explanation
Indices: 25758585--25758681 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 40
25758575 AATATATCGA
* * *
25758585 GCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGG
1 GCTAAGACCCGAAGGCATTCGTGCAAATCGTGAAATCCGG
* *
25758625 GCTAAGACCCGAAGGCATTTTGTGCAAATCGTGATATCCGG
1 GCTAAGACCCGAAGGCA-TTCGTGCAAATCGTGAAATCCGG
* * *
25758666 GTTAAGTCCCGTAGGC
1 GCTAAGACCCGAAGGC
25758682 CTTGGTGCGG
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 17 0.35
41 31 0.65
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
GCTAAGACCCGAAGGCATTCGTGCAAATCGTGAAATCCGG
Found at i:25769893 original size:24 final size:23
Alignment explanation
Indices: 25769861--25770070 Score: 293
Period size: 24 Copynumber: 9.0 Consensus size: 23
25769851 TGCTTTATCA
*
25769861 TATAACTGGAGGCCT-AGCCTCTTT
1 TATAACTGG-GGCATAAGCC-CTTT
*
25769885 TATAACT-GGGCAAAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
25769907 T-TAACT-GGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
*
25769928 TGATCACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
25769952 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
25769975 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
25769999 TAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
25770023 TGATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTT
*
25770047 AATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
25770070 T
1 T
25770071 GCACTTCCTC
Statistics
Matches: 170, Mismatches: 11, Indels: 11
0.89 0.06 0.06
Matches are distributed among these distances:
21 20 0.12
22 8 0.05
23 52 0.31
24 90 0.53
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (23 bp):
TATAACTGGGGCATAAGCCCTTT
Found at i:25769973 original size:47 final size:47
Alignment explanation
Indices: 25769862--25770071 Score: 322
Period size: 47 Copynumber: 4.5 Consensus size: 47
25769852 GCTTTATCAT
* *
25769862 ATAACTGGAGGCCT-AGCCTCTTTT-ATAACT-GGGCAAAAGCCCTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTGATAACTGGGGCATAAGCCCTTTA
* *
25769907 TTAACT-GGGCATAAGCCCTTTTGATCACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
25769953 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTA
25770001 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
25770048 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
25770072 CACTTCCTCC
Statistics
Matches: 153, Mismatches: 6, Indels: 10
0.91 0.04 0.06
Matches are distributed among these distances:
43 9 0.06
44 10 0.07
45 19 0.12
46 5 0.03
47 63 0.41
48 47 0.31
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
Found at i:25770142 original size:9 final size:9
Alignment explanation
Indices: 25770128--25770184 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
25770118 ATCTCATGTG
25770128 CATATCATA
1 CATATCATA
*
25770137 CATATCATGTG
1 CATATCA--TA
25770148 CATATCATA
1 CATATCATA
* *
25770157 CATGTCATGTG
1 CATATCA--TA
25770168 CATATCATA
1 CATATCATA
25770177 CATATCAT
1 CATATCAT
25770185 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:25770144 original size:20 final size:20
Alignment explanation
Indices: 25770116--25770186 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
25770106 GCATTTATGA
*
25770116 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
25770136 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
25770156 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
25770176 ACATATCATGT
1 ACATATCATGT
25770187 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:25770151 original size:11 final size:11
Alignment explanation
Indices: 25770121--25770175 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
25770111 TATGAACATC
25770121 TCATGTGCATA
1 TCATGTGCATA
*
25770132 TCA--TACATA
1 TCATGTGCATA
25770141 TCATGTGCATA
1 TCATGTGCATA
* *
25770152 TCA--TACATG
1 TCATGTGCATA
25770161 TCATGTGCATA
1 TCATGTGCATA
25770172 TCAT
1 TCAT
25770176 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:25770249 original size:25 final size:25
Alignment explanation
Indices: 25770221--25770268 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25770211 TCATATAAAC
* * *
25770221 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
25770246 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
25770269 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:25771474 original size:27 final size:27
Alignment explanation
Indices: 25771412--25771476 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
25771402 GGGCATATTC
25771412 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
25771439 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
25771466 GTCTTTTTACC
1 GTCATTTTACC
25771477 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:25771560 original size:27 final size:27
Alignment explanation
Indices: 25771530--25771581 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
25771520 GTAAATCAAC
25771530 AAACCAAAGGTATTTC-AGTAATTTTGT
1 AAACCAAAGGTATTTCTA-TAATTTTGT
*
25771557 AAACCAATGGTATTTCTATAATTTT
1 AAACCAAAGGTATTTCTATAATTTT
25771582 TAGAAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (27 bp):
AAACCAAAGGTATTTCTATAATTTTGT
Found at i:25771699 original size:39 final size:40
Alignment explanation
Indices: 25771632--25771712 Score: 119
Period size: 39 Copynumber: 2.0 Consensus size: 40
25771622 GTATTTTGGT
**
25771632 AATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACC
1 AATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACC
* *
25771672 AATTTTACAAA-CAAGGGTATTTTGGTAATTTTACAAACC
1 AATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACC
25771711 AA
1 AA
25771713 GGGTATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
39 26 0.70
40 11 0.30
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (40 bp):
AATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACC
Found at i:25771708 original size:26 final size:27
Alignment explanation
Indices: 25771672--25771730 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
25771662 TTCACAAACC
*
25771672 AATTTTACAAA-CAAGGGTATTTTGGT
1 AATTTTACAAACCAAGGGTATTTTAGT
25771698 AATTTTACAAACCAAGGGTATTTTAGT
1 AATTTTACAAACCAAGGGTATTTTAGT
25771725 AATTTT
1 AATTTT
25771731 GTAAATCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 11 0.35
27 20 0.65
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (27 bp):
AATTTTACAAACCAAGGGTATTTTAGT
Found at i:25771742 original size:27 final size:27
Alignment explanation
Indices: 25771683--25771767 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
25771673 ATTTTACAAA
* ** *
25771683 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTGTAAAT
25771710 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
* *** *
25771737 CGAGGGTAAAATAGTAATTCTGTAAAT
1 CAAGGGTATTTTAGTAATTTTGTAAAT
25771764 CAAG
1 CAAG
25771768 TACAGTAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTGTAAAT
Found at i:25771803 original size:27 final size:27
Alignment explanation
Indices: 25771772--25772051 Score: 376
Period size: 27 Copynumber: 10.5 Consensus size: 27
25771762 ATCAAGTACA
**
25771772 GTAAATCGAGGGTAAAATAGTAATTCT
1 GTAAATCGAGGGTAAAACGGTAATTCT
*
25771799 GTAAATCGAGGGTAAAACAGTAATTCT
1 GTAAATCGAGGGTAAAACGGTAATTCT
25771826 GTAAATCGAGGGTAAAACGGTAATTCT
1 GTAAATCGAGGGTAAAACGGTAATTCT
*
25771853 GTAAATCGAGGGTAAAACGGTAATTAT
1 GTAAATCGAGGGTAAAACGGTAATTCT
*
25771880 GTAAATCAGAGGGTAAAAC-GTAATTAT
1 GTAAATC-GAGGGTAAAACGGTAATTCT
*
25771907 GTAAATC-AGGGTAAAACGGTAATT-A
1 GTAAATCGAGGGTAAAACGGTAATTCT
*
25771932 GTAAAT-TAGGGTAAAACGGTAATTCT
1 GTAAATCGAGGGTAAAACGGTAATTCT
* * *
25771958 GTAAGTCGAGGGTAAAACGATAATTAT
1 GTAAATCGAGGGTAAAACGGTAATTCT
*
25771985 GTAAATC-AGGGGTAAAACGGTAATTAT
1 GTAAATCGA-GGGTAAAACGGTAATTCT
*
25772012 GTAAAT-TAGGGGTAAAACGGTAATTCT
1 GTAAATCGA-GGGTAAAACGGTAATTCT
25772039 GTAAATCG-GGGTA
1 GTAAATCGAGGGTA
25772052 CTTTGGTAAT
Statistics
Matches: 232, Mismatches: 13, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
25 33 0.14
26 17 0.07
27 171 0.74
28 11 0.05
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (27 bp):
GTAAATCGAGGGTAAAACGGTAATTCT
Found at i:25771969 original size:132 final size:134
Alignment explanation
Indices: 25771772--25772051 Score: 406
Period size: 132 Copynumber: 2.1 Consensus size: 134
25771762 ATCAAGTACA
* *
25771772 GTAAATCGAGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGG
1 GTAAATC-AGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGG
* *
25771837 GTAAAACGGTAATTCTGTAAATC-GAGGGTAAAACGGTAATTATGTAAATCAGAGGGTAAAAC-G
65 GTAAAACGATAATTATGTAAATCAG-GGGTAAAACGGTAATTATGTAAATCAG-GGGTAAAACGG
25771900 TAATTAT
128 TAATTAT
* * * *
25771907 GTAAATCAGGGTAAAACGGTAATT-AGTAAAT-TAGGGTAAAACGGTAATTCTGTAAGTCGAGGG
1 GTAAATCAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGG
*
25771970 TAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATTAGGGGTAAAACGGTAA
66 TAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACGGTAA
*
25772035 TTCT
131 TTAT
*
25772039 GTAAATCGGGGTA
1 GTAAATCAGGGTA
25772052 CTTTGGTAAT
Statistics
Matches: 132, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
131 9 0.07
132 94 0.71
133 7 0.05
134 15 0.11
135 7 0.05
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (134 bp):
GTAAATCAGGGTAAAACAGTAATTCAGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGG
TAAAACGATAATTATGTAAATCAGGGGTAAAACGGTAATTATGTAAATCAGGGGTAAAACGGTAA
TTAT
Found at i:25772118 original size:26 final size:25
Alignment explanation
Indices: 25772041--25772144 Score: 100
Period size: 26 Copynumber: 4.0 Consensus size: 25
25772031 GTAATTCTGT
* *
25772041 AAATCGGGGTACTTTGGTAATTTTAC
1 AAATCAGGGTA-TTTCGTAATTTTAC
* * *
25772067 AAGTCGAAGGTATTTCGGTAAATTTAC
1 AAATC-AGGGTATTTC-GTAATTTTAC
*
25772094 AAATCAGGGTATTTCAGTATTTTTAC
1 AAATCAGGGTATTTC-GTAATTTTAC
*
25772120 AAACTAAGGGTATTTCGTAATTTTA
1 AAA-TCAGGGTATTTCGTAATTTTA
25772145 GTAAACTAAA
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
26 35 0.56
27 28 0.44
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (25 bp):
AAATCAGGGTATTTCGTAATTTTAC
Found at i:25772150 original size:27 final size:27
Alignment explanation
Indices: 25772057--25772153 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
25772047 GGGTACTTTG
* * *
25772057 GTAATTTTACAAGTCGAA-GGTATTTCG
1 GTAATTTTACAA-ACTAAGGGTATTTCA
* *
25772084 GTAAATTTACAAA-TCAGGGTATTTCA
1 GTAATTTTACAAACTAAGGGTATTTCA
*
25772110 GTATTTTTACAAACTAAGGGTATTTC-
1 GTAATTTTACAAACTAAGGGTATTTCA
*
25772136 GTAATTTTAGTAAACTAA
1 GTAATTTTA-CAAACTAA
25772154 AGTATTCTAA
Statistics
Matches: 57, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.02
26 27 0.47
27 29 0.51
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGGGTATTTCA
Found at i:25772158 original size:26 final size:27
Alignment explanation
Indices: 25772057--25772159 Score: 79
Period size: 26 Copynumber: 3.9 Consensus size: 27
25772047 GGGTACTTTG
* * *
25772057 GTAATTTTACAAGTCGAAG-GTATTTCG
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
25772084 GTAAATTTACAAA-TCAGGGTATTTCA
1 GTAATTTTACAAACTAAGAGTATTTCA
* *
25772110 GTATTTTTACAAACTAAGGGTATTTC-
1 GTAATTTTACAAACTAAGAGTATTTCA
*
25772136 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
25772160 CTAAACAGGA
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.03
26 31 0.50
27 29 0.47
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:25775274 original size:23 final size:24
Alignment explanation
Indices: 25775192--25775451 Score: 365
Period size: 23 Copynumber: 11.0 Consensus size: 24
25775182 GCTTTATCAT
*
25775192 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
25775216 AGTAACTGGGGCAAAAGCCCTTTTTG
1 A-TAACTGGGGCATAAGCCC-TTTTG
25775242 -TAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
25775265 ATCACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
25775287 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
25775311 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
25775334 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
25775358 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
25775381 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
25775405 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
25775428 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
25775452 CACTTCCTCC
Statistics
Matches: 213, Mismatches: 13, Indels: 20
0.87 0.05 0.08
Matches are distributed among these distances:
22 8 0.04
23 95 0.45
24 95 0.45
25 15 0.07
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:25775282 original size:47 final size:47
Alignment explanation
Indices: 25775192--25775451 Score: 418
Period size: 47 Copynumber: 5.5 Consensus size: 47
25775182 GCTTTATCAT
* * *
25775192 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTGA-TAACTGGGGCATAAGCCC-TTTA
* *
25775241 GTAACTGGGGCATAAGCCCTTTTGATCACT-GGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
25775287 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
25775334 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
25775381 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
25775428 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
25775452 CACTTCCTCC
Statistics
Matches: 201, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
46 31 0.15
47 145 0.72
48 13 0.06
49 12 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
ATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTA
Found at i:25775522 original size:9 final size:9
Alignment explanation
Indices: 25775507--25775565 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
25775497 CATCTCATGC
25775507 GCATATCAT
1 GCATATCAT
*
25775516 ACATATCATGT
1 GCATATCA--T
25775527 GCATATCAT
1 GCATATCAT
* *
25775536 ACATGTCATGT
1 GCATATCA--T
25775547 GCATATCAT
1 GCATATCAT
25775556 GCATATCAT
1 GCATATCAT
25775565 G
1 G
25775566 TTTATCAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 25 0.62
11 15 0.38
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (9 bp):
GCATATCAT
Found at i:25775524 original size:20 final size:20
Alignment explanation
Indices: 25775496--25775566 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
25775486 GCATTTATGA
* *
25775496 ACATCTCATGCGCATATCAT
1 ACATATCATGTGCATATCAT
25775516 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
25775536 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
25775556 GCATATCATGT
1 ACATATCATGT
25775567 TTATCAAAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:25776860 original size:27 final size:27
Alignment explanation
Indices: 25776798--25776862 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
25776788 GGGCATATTC
25776798 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
25776825 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
*
25776852 GTCTTTTTACC
1 GTCATTTTACC
25776863 TTTTAGGGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:25776946 original size:27 final size:27
Alignment explanation
Indices: 25776914--25777131 Score: 184
Period size: 27 Copynumber: 8.0 Consensus size: 27
25776904 TGGTAAATCA
* *
25776914 ACAAACCAAAGGTATTTCAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
** * **
25776941 GTAAACCAATGGTATTTCTATAATTTTT
1 ACAAACCAAGGGTATTTCGGTAA-TTTT
* * * *
25776969 AGAAAGTCAAGGGTATTTCTGTAACTTT
1 ACAAA-CCAAGGGTATTTCGGTAATTTT
** * * *
25776997 GTAAATCAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
*** *
25777024 ACAAATTGAGGGTATTTCGGTAATTTC
1 ACAAACCAAGGGTATTTCGGTAATTTT
*
25777051 ACAAACCAAGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
* * *
25777078 ACAAACTAGGGGTATTTTGGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
**
25777105 ACAAACCAAGGGTATTTTAGTAATTTT
1 ACAAACCAAGGGTATTTCGGTAATTTT
25777132 GTAAATCGAG
Statistics
Matches: 155, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 127 0.82
28 13 0.08
29 15 0.10
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
ACAAACCAAGGGTATTTCGGTAATTTT
Found at i:25777143 original size:27 final size:27
Alignment explanation
Indices: 25776924--25777199 Score: 162
Period size: 27 Copynumber: 10.1 Consensus size: 27
25776914 ACAAACCAAA
* * * *
25776924 GGTATTTCAGTAATTTTGTAAACCAAT
1 GGTATTTTAGTAATTTTATAAATCAAG
*
25776951 GGTATTTCTA-TAATTTTTAGAAAGTCAAG
1 GGTATTT-TAGTAA-TTTTATAAA-TCAAG
* * *
25776980 GGTATTTCT-GTAACTTTGTAAATCAGG
1 GGTATTT-TAGTAATTTTATAAATCAAG
* * **
25777007 GGTATTTTGGTAATTTTACAAATTGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
** * * *
25777034 GGTATTTCGGTAATTTCACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* * *
25777061 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTTAGTAATTTTATAAATC-AAG
* * *
25777088 GGTATTTTGGTAATTTTACAAACCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
* *
25777115 GGTATTTTAGTAATTTTGTAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
*** * *
25777142 GGTAAAATAGTAATTCTGTAAATCAAG
1 GGTATTTTAGTAATTTTATAAATCAAG
**** * *
25777169 GGTAAAACAGTAATTCTATAAATCGAG
1 GGTATTTTAGTAATTTTATAAATCAAG
25777196 GGTA
1 GGTA
25777200 AAACGGTAAT
Statistics
Matches: 205, Mismatches: 37, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
26 2 0.01
27 173 0.84
28 15 0.07
29 15 0.07
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTATTTTAGTAATTTTATAAATCAAG
Found at i:25777155 original size:81 final size:81
Alignment explanation
Indices: 25777004--25777156 Score: 180
Period size: 81 Copynumber: 1.9 Consensus size: 81
25776994 TTTGTAAATC
*** * ***
25777004 AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAAT
*
25777069 GGTAATTTTACAAACT
66 AGTAATTTTACAAACT
* *** * *
25777085 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAAT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAAT
25777150 AGTAATT
66 AGTAATT
25777157 CTGTAAATCA
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
81 58 1.00
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.38
Consensus pattern (81 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTAAAAT
AGTAATTTTACAAACT
Found at i:25777200 original size:27 final size:27
Alignment explanation
Indices: 25777124--25777415 Score: 367
Period size: 27 Copynumber: 10.8 Consensus size: 27
25777114 GGGTATTTTA
* **
25777124 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
25777151 GTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
25777178 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
25777205 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
25777232 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
25777259 GTAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* *
25777286 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
25777313 GTAATTCTGTAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
25777340 ATAATTATGTAAATC-AGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
* * *
25777367 GTAATTATGTAACT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGA-GGGTAAAACG
*
25777394 GTAATTCTGTAAATCGGGGGTA
1 GTAATTCTGTAAATCGAGGGTA
25777416 CTTTGGTAAT
Statistics
Matches: 237, Mismatches: 22, Indels: 12
0.87 0.08 0.04
Matches are distributed among these distances:
26 2 0.01
27 234 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.09, G:0.25, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:25777464 original size:27 final size:27
Alignment explanation
Indices: 25777412--25777510 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
25777402 GTAAATCGGG
**
25777412 GGTACTTT-GGTAATTTTACATGTCGAA
1 GGTA-TTTCGGTAATTTTACAAATCGAA
* *
25777439 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAA
* * *
25777466 GGTATTTCAGTATTTTTACAAA-CTAA
1 GGTATTTCGGTAATTTTACAAATCGAA
*
25777492 GGGTATTTCGATAATTTTA
1 -GGTATTTCGGTAATTTTA
25777511 GTAAACTAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
26 5 0.09
27 53 0.91
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAA
Found at i:25777517 original size:28 final size:27
Alignment explanation
Indices: 25777439--25777519 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
25777429 ACATGTCGAA
* * *
25777439 GGTATTTCGGTAAATTTACAAA-TCGAG
1 GGTATTTCAGTAATTTTACAAACT-AAG
*
25777466 GGTATTTCAGTATTTTTACAAACTAAG
1 GGTATTTCAGTAATTTTACAAACTAAG
*
25777493 GGTATTTC-GATAATTTTAGTAAACTAA
1 GGTATTTCAG-TAATTTTA-CAAACTAA
25777520 AGTATTCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.02
27 36 0.80
28 8 0.18
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTACAAACTAAG
Found at i:25781969 original size:16 final size:16
Alignment explanation
Indices: 25781950--25781980 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25781940 CTTCTTCACT
25781950 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
25781966 TACTTACTTACTTAA
1 TACTCACTTACTTAA
25781981 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:25781986 original size:20 final size:20
Alignment explanation
Indices: 25781947--25781986 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
25781937 AAACTTCTTC
* *
25781947 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
25781967 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
25781987 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:25782326 original size:55 final size:49
Alignment explanation
Indices: 25782196--25782326 Score: 154
Period size: 55 Copynumber: 2.6 Consensus size: 49
25782186 ACTTGTCATA
* * *
25782196 CTTGTCATGGTCTTACGTGGTATCCTTTTGAAACTTACCATTGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTTTGAAACTTACCATTGCCATGC
* *
25782245 CTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAATTGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTT---TT-GAAA-CTTACC-ATTGCCATGC
*
25782300 CTTGGCATGGTCTTACATGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
25782327 AAACCCTAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
49 23 0.34
52 2 0.03
53 4 0.06
54 6 0.09
55 33 0.49
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (49 bp):
CTTGACATGGTCTTACATGGTATCCTTTTGAAACTTACCATTGCCATGC
Found at i:25794385 original size:40 final size:40
Alignment explanation
Indices: 25794186--25794371 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
25794176 TATTTGGATG
* * *
25794186 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
25794226 A-ATTC-GGCTAAG-CCCGAAGGCATTTGTGCGAGCTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** **
25794263 ATATTCGGGCTAAGTCCCGAAGTTATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
25794303 ATAACCGGGCTATGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
25794343 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
25794372 AGCAAGTAGC
Statistics
Matches: 126, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
37 22 0.17
38 11 0.09
39 9 0.07
40 84 0.67
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:25794385 original size:80 final size:79
Alignment explanation
Indices: 25794186--25794394 Score: 239
Period size: 80 Copynumber: 2.7 Consensus size: 79
25794176 TATTTGGATG
* * *
25794186 ATAACCGGGCTAAGTCCTGAAGGCATTTGTGCTAGT-GACTA-ATTC-GGCTAAGCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATATCCGGGCTAAGCCCGAAGGCA
25794248 TTTGTGCGAGCTACT
65 TTTGTGCGAGCTACT
** ** * * * *
25794263 ATATTCGGGCTAAGTCCCGAAGTTATTTGTGCGAGTTA-CTATAACCGGGCTATGTCTCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATCCGGGCTAAG-CCCGAAGGC
*
25794327 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGCTACT
*
25794343 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAA
25794395 ATTCCGAAGA
Statistics
Matches: 107, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
77 32 0.30
78 3 0.03
79 13 0.12
80 59 0.55
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGGCTAAGCCCGAAGGCAT
TTGTGCGAGCTACT
Found at i:25802269 original size:40 final size:40
Alignment explanation
Indices: 25802163--25802348 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
25802153 TATTCGGATG
* *
25802163 ATAACCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
**
25802202 A-ATTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
25802240 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
25802280 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
25802320 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
25802349 AGCAAGTAGC
Statistics
Matches: 138, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
38 33 0.24
39 12 0.09
40 93 0.67
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:25809003 original size:40 final size:40
Alignment explanation
Indices: 25808949--25809106 Score: 253
Period size: 40 Copynumber: 4.0 Consensus size: 40
25808939 CGGATGTAAC
* *
25808949 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
25808989 AACCCACACGAATGCCTTTGGGACTTAACTCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
25809029 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
25809069 AACCCGCACAAATGCCTTCGAGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
25809107 TTTTTTTTTC
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:25811904 original size:27 final size:28
Alignment explanation
Indices: 25811867--25811979 Score: 112
Period size: 27 Copynumber: 4.2 Consensus size: 28
25811857 AACATGGCTG
*
25811867 CCAGA-ACAGATATTGTGA-CAGAGTCA
1 CCAGATACAGATATTGTGAGCAGAGCCA
**
25811893 CCAGATACAGATATTGT-AGCAGAGTAA
1 CCAGATACAGATATTGTGAGCAGAGCCA
* * *
25811920 TCAGAAACAGATATT-TCTAGCAGAGCCA
1 CCAGATACAGATATTGT-GAGCAGAGCCA
25811948 CCAGAT-CAGATATTTGTG-GCAGAGCCA
1 CCAGATACAGATA-TTGTGAGCAGAGCCA
25811975 CCAGA
1 CCAGA
25811980 ACGCTTCCTC
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.10
27 51 0.70
28 14 0.19
29 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (28 bp):
CCAGATACAGATATTGTGAGCAGAGCCA
Found at i:25826908 original size:27 final size:27
Alignment explanation
Indices: 25826870--25826981 Score: 170
Period size: 27 Copynumber: 4.1 Consensus size: 27
25826860 GGTCATTATT
*
25826870 TGACCGTAATGCCCCTGTAGGGTAAAA
1 TGACCGTAATGCCCCTATAGGGTAAAA
25826897 TGACCGTAATGCCCCTATAGGGTAAAA
1 TGACCGTAATGCCCCTATAGGGTAAAA
25826924 TGACCGTAATGCCCCTATAGGGTAAAA
1 TGACCGTAATGCCCCTATAGGGTAAAA
* * * * *
25826951 TGATCGTAATACACCTGTATGGTAAAA
1 TGACCGTAATGCCCCTATAGGGTAAAA
25826978 TGAC
1 TGAC
25826982 GATTATTCCC
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (27 bp):
TGACCGTAATGCCCCTATAGGGTAAAA
Found at i:25827362 original size:28 final size:30
Alignment explanation
Indices: 25827331--25827397 Score: 75
Period size: 33 Copynumber: 2.2 Consensus size: 30
25827321 TTAGGCACAC
* *
25827331 ACTGTT-AT-TGTATAGGGCTAAGGCCCAG
1 ACTGTTGATATGTATAGGGCTAAAGCCAAG
25827359 ACTGTACTGATACTGTATAGGGCTAAAGCCAAG
1 ACTGT--TGATA-TGTATAGGGCTAAAGCCAAG
25827392 ACTGTT
1 ACTGTT
25827398 TTGCATATTC
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
28 5 0.16
30 1 0.03
31 3 0.09
33 23 0.72
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (30 bp):
ACTGTTGATATGTATAGGGCTAAAGCCAAG
Found at i:25831548 original size:54 final size:53
Alignment explanation
Indices: 25831360--25831548 Score: 189
Period size: 55 Copynumber: 3.5 Consensus size: 53
25831350 ATTGCTATGT
** * * *
25831360 CTTGACATGGTCTTATGTGGTATCCTTGCCTTATGAACTCACCATTGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAAACTTACCAATGCCATGC
* * * * ** * *
25831413 CTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTAT--AAACTTACCAATGCCATGC
* * *
25831468 CTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTAT-AAACTTACCAATGCCATGC
* *
25831522 CTTGGCATGGTCTTACTTGGTATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
25831549 AAACCCTAAT
Statistics
Matches: 106, Mismatches: 28, Indels: 3
0.77 0.20 0.02
Matches are distributed among these distances:
53 29 0.27
54 37 0.35
55 40 0.38
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (53 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATAAACTTACCAATGCCATGC
Found at i:25837575 original size:55 final size:52
Alignment explanation
Indices: 25837428--25837613 Score: 151
Period size: 55 Copynumber: 3.5 Consensus size: 52
25837418 AACTTACGAT
* * *
25837428 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCAT
1 TGCCATGTCTTGACATGGTCTTACATGAT-TCCTTGCCTTATGAACTCACCAA
* * ** * *
25837481 TGCCATGCCTTGGCATGGTCTTACATAGGA-T-CTTGGCCTTATCGTAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACAT--GATTCCTT-GCCTTAT-G-AACTCACCAA
* * *
25837536 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAA
1 TGCCATGTCTTGACATGGTCTTACATGA-TTCCTTGCCTTAT-GAACTCACCAA
* * *
25837590 TGCTATGCCTTGGCATGGTCTTAC
1 TGCCATGTCTTGACATGGTCTTAC
25837614 TTGGTATCCT
Statistics
Matches: 105, Mismatches: 20, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
52 3 0.03
53 33 0.31
54 29 0.28
55 37 0.35
56 3 0.03
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (52 bp):
TGCCATGTCTTGACATGGTCTTACATGATTCCTTGCCTTATGAACTCACCAA
Found at i:25841595 original size:29 final size:28
Alignment explanation
Indices: 25841561--25841663 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
25841551 TAATCGATCA
*
25841561 CGCACACTTAGTGCCATGTGATTTAAGCT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
* **
25841590 CGCACACATAGTGCCATATAATTTAAATT
1 CGCACACTTAGTGCCATAT-ATTTAAGCT
25841619 CGCACACTTAGTGCCATACT-TTTCAAGCT
1 CGCACACTTAGTGCCATA-TATTT-AAGCT
*
25841648 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
25841664 ATCTTGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
28 3 0.05
29 59 0.94
30 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTTAAGCT
Found at i:25848794 original size:29 final size:29
Alignment explanation
Indices: 25848752--25848809 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
25848742 CTAGGTTATT
25848752 TTCCAAGCCATTTCCACCCTTAAACACTC
1 TTCCAAGCCATTTCCACCCTTAAACACTC
25848781 TTCCAAGCCATTTCCACCCTTAAACACTC
1 TTCCAAGCCATTTCCACCCTTAAACACTC
25848810 ACATACTTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.41, G:0.03, T:0.28
Consensus pattern (29 bp):
TTCCAAGCCATTTCCACCCTTAAACACTC
Found at i:25849938 original size:45 final size:45
Alignment explanation
Indices: 25849888--25849978 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
25849878 CCAAAACATG
* *
25849888 TGTCACATACATCATGAACCCAGACCATAACTCAATGAGTTTAGA
1 TGTCACATACATCATGAACCCAGACCACAACTCAATGAGTTCAGA
* * *
25849933 TGTCACATATATCATGAACTCATACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACCCAGACCACAACTCAATGAGTTCAGA
25849978 T
1 T
25849979 CACATAGTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.26
Consensus pattern (45 bp):
TGTCACATACATCATGAACCCAGACCACAACTCAATGAGTTCAGA
Found at i:25852167 original size:39 final size:40
Alignment explanation
Indices: 25852112--25852297 Score: 297
Period size: 39 Copynumber: 4.7 Consensus size: 40
25852102 GCTACTTGCT
25852112 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
25852152 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
25852191 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
25852231 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
25852269 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
25852298 CATCCAAATA
Statistics
Matches: 135, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 23 0.17
39 60 0.44
40 52 0.39
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:25852211 original size:79 final size:78
Alignment explanation
Indices: 25852112--25852297 Score: 300
Period size: 79 Copynumber: 2.4 Consensus size: 78
25852102 GCTACTTGCT
**
25852112 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGGT
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGAA
*
25852177 TATAGTAACTCGCA
66 T-TAGTAACTAGCA
* * *
25852191 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGCTTAGCCCGAA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGAA
*
25852256 TTAGTCACTAGCA
66 TTAGTAACTAGCA
25852269 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
25852298 CATCCAAATA
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 38 0.38
79 61 0.62
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGAA
TTAGTAACTAGCA
Found at i:25860134 original size:39 final size:40
Alignment explanation
Indices: 25860079--25860224 Score: 208
Period size: 40 Copynumber: 3.6 Consensus size: 40
25860069 GCTACTTGCT
25860079 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
25860119 CAAATGCCTTC-GGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
25860158 CAAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 C-AAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
25860198 CAAATTGCCTTCGGGACTTAGACCCGG
1 CAAA-TGCCTTCGGGACTTAG-CCCGG
25860225 ATTAATTTCA
Statistics
Matches: 97, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
39 33 0.34
40 52 0.54
41 7 0.07
42 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:25861859 original size:40 final size:40
Alignment explanation
Indices: 25861731--25861881 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
25861721 GATATCACGT
* * *
25861731 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
25861771 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
25861811 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* * *
25861851 GCATAATTGTCTTCGGG-ATTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
25861882 CATTCAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 14 0.16
40 74 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:25861865 original size:80 final size:79
Alignment explanation
Indices: 25861731--25861879 Score: 194
Period size: 80 Copynumber: 1.9 Consensus size: 79
25861721 GATATCACGT
* *
25861731 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-ATTAGCC
25861796 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
25861811 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTAGC
25861874 CCGGAT
64 CCGGAT
25861880 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
79 14 0.23
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTAGCCC
GGATGTAGCCACTA
Found at i:25869756 original size:40 final size:39
Alignment explanation
Indices: 25869711--25869837 Score: 121
Period size: 40 Copynumber: 3.2 Consensus size: 39
25869701 CGGAACATAA
25869711 CCGGATACAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATACAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
25869751 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATACAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
** * * * *
25869791 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATACAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
25869831 CCGGATA
1 CCGGATA
25869838 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATACAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:25869855 original size:40 final size:40
Alignment explanation
Indices: 25869727--25869877 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
25869717 ACAACCATGT
* * *
25869727 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
25869767 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
25869807 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
25869847 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
25869878 TCATTCAATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:25869861 original size:80 final size:80
Alignment explanation
Indices: 25869727--25869876 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
25869717 ACAACCATGT
* *
25869727 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
25869791 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
25869807 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
25869870 CCCGGAT
64 CCCGGAT
25869877 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:25869924 original size:21 final size:21
Alignment explanation
Indices: 25869898--25869957 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
25869888 TCCCATGAAC
25869898 ACATACATCAATTATCATTGG
1 ACATACATCAATTATCATTGG
*
25869919 ACATACAT-AA-T-TCATT-T
1 ACATACATCAATTATCATTGG
*
25869936 TCATACATCAATTATCATTGG
1 ACATACATCAATTATCATTGG
25869957 A
1 A
25869958 TATCCGTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
17 7 0.23
18 7 0.23
19 2 0.06
20 7 0.23
21 8 0.26
ACGTcount: A:0.38, C:0.18, G:0.07, T:0.37
Consensus pattern (21 bp):
ACATACATCAATTATCATTGG
Found at i:25879773 original size:16 final size:16
Alignment explanation
Indices: 25879752--25879791 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
25879742 CCCCCTAAAT
*
25879752 ACCTAAGGGGAATGAA
1 ACCTAAGAGGAATGAA
25879768 ACCTAAGAGGAATGAA
1 ACCTAAGAGGAATGAA
25879784 ACCTAAGA
1 ACCTAAGA
25879792 CGGATCTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.47, C:0.15, G:0.25, T:0.12
Consensus pattern (16 bp):
ACCTAAGAGGAATGAA
Found at i:25883761 original size:43 final size:42
Alignment explanation
Indices: 25883713--25883850 Score: 141
Period size: 43 Copynumber: 3.2 Consensus size: 42
25883703 TACCCCATAT
* *
25883713 ATGGTCTTACATGTTATCACACATCGATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACA-ATCGATGCCAATGTCCCAGAC
* * * * *
25883756 ATGGTCTTACACGAAATCATATAACGAAGCCAATCTCCCAGAC
1 ATGGTCTTACACGTAATCACA-ATCGATGCCAATGTCCCAGAC
* * * **
25883799 ATGGTCTTACACATAAACACAATACAATGCCAATGTCCTGGAC
1 ATGGTCTTACACGTAATCACAAT-CGATGCCAATGTCCCAGAC
25883842 ATGGTCTTA
1 ATGGTCTTA
25883851 TATAACATAT
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 1 0.01
43 75 0.99
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACAATCGATGCCAATGTCCCAGAC
Found at i:25889569 original size:21 final size:20
Alignment explanation
Indices: 25889526--25889569 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
25889516 ATTTCCCACG
* *
25889526 TTGGCCCATTTTCTCTGTTT
1 TTGGCCCATTTTCGCTCTTT
*
25889546 TTGGCTCATTTCTCGCTCTTT
1 TTGGCCCATTT-TCGCTCTTT
25889567 TTG
1 TTG
25889570 CCCTCCTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.05, C:0.25, G:0.16, T:0.55
Consensus pattern (20 bp):
TTGGCCCATTTTCGCTCTTT
Found at i:25892222 original size:46 final size:46
Alignment explanation
Indices: 25892172--25892344 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
25892162 TGGTTGAGCA
*
25892172 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
25892218 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
25892265 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
25892311 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
25892345 GGGGCGGTTA
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:25892328 original size:93 final size:93
Alignment explanation
Indices: 25892169--25892339 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
25892159 GGATGGTTGA
* *
25892169 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
25892234 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
25892262 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
25892327 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
25892340 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:25892605 original size:19 final size:20
Alignment explanation
Indices: 25892568--25892605 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
25892558 ATAAGGTGGT
25892568 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
25892588 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
25892606 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:25898705 original size:40 final size:40
Alignment explanation
Indices: 25898646--25898786 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
25898636 AAATTGAATG
* * *
25898646 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * ***
25898686 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
25898726 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAG-TATT
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTAGAAACT
*
25898765 CTATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
25898787 GCATTTGTGC
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
39 25 0.29
40 60 0.71
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:25898780 original size:39 final size:39
Alignment explanation
Indices: 25898685--25898796 Score: 145
Period size: 40 Copynumber: 2.8 Consensus size: 39
25898675 TGCTGGAAAT
* * *
25898685 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
*
25898725 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGT-AT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
*
25898764 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGC
25898797 ACGTGATATC
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
39 32 0.49
40 33 0.51
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:25906679 original size:40 final size:40
Alignment explanation
Indices: 25906613--25906779 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
25906603 AAATTGAATG
* * *
25906613 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
25906652 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
25906692 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
25906732 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
25906772 ATATCCGG
1 ATATCCGG
25906780 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:25909038 original size:2 final size:2
Alignment explanation
Indices: 25909031--25909072 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
25909021 TCAGGTGATT
25909031 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25909073 CACGTTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25909391 original size:42 final size:42
Alignment explanation
Indices: 25909299--25909394 Score: 104
Period size: 42 Copynumber: 2.3 Consensus size: 42
25909289 TTACAATTAT
* * *
25909299 CATGTAAGACCATATCTGAGATATGGTATTGATATGAGATAT
1 CATGTAAGACCATATCTGAGATATGGCATCGATATGAGATAC
** * * *
25909341 TGTATAAGACCATATCT-AGTATATGGCATCGATGTGAGATCC
1 CATGTAAGACCATATCTGAG-ATATGGCATCGATATGAGATAC
25909383 CATGTAAGACCA
1 CATGTAAGACCA
25909395 CATATGGGAC
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
41 2 0.05
42 40 0.95
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCATATCTGAGATATGGCATCGATATGAGATAC
Found at i:25910203 original size:5 final size:5
Alignment explanation
Indices: 25910193--25910221 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
25910183 TTAGCCGAAC
25910193 CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
1 CTCTT CTCTT CTCTT CTCTT CTCTT CTCT
25910222 CCCCCCTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (5 bp):
CTCTT
Found at i:25911307 original size:2 final size:2
Alignment explanation
Indices: 25911302--25911330 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
25911292 TATGCCATTC
25911302 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25911331 TGTATACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25911613 original size:34 final size:33
Alignment explanation
Indices: 25911569--25911647 Score: 81
Period size: 33 Copynumber: 2.4 Consensus size: 33
25911559 TGCATATCTG
* *
25911569 CACTGCTACT-GTCACTGAAATGGGCTCAGGCCCA
1 CACTGATACTGGT-ACTGAAAT-GGCTAAGGCCCA
*
25911603 CACTGATACTGGTACTGTAATGGCTAAGGCCCTA
1 CACTGATACTGGTACTGAAATGGCTAAGGCCC-A
*
25911637 -ACTGAAACTGG
1 CACTGATACTGG
25911648 ATTATTATTG
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
33 20 0.51
34 17 0.44
35 2 0.05
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.23
Consensus pattern (33 bp):
CACTGATACTGGTACTGAAATGGCTAAGGCCCA
Found at i:25911641 original size:33 final size:34
Alignment explanation
Indices: 25911582--25911647 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
25911572 TGCTACTGTC
* *
25911582 ACTGAAATGGGCTCAGGCCCACACTGATACTGGT
1 ACTGAAATGGGCTAAGGCCCACACTGAAACTGGT
*
25911616 ACTGTAAT-GGCTAAGGCCCTA-ACTGAAACTGG
1 ACTGAAATGGGCTAAGGCCC-ACACTGAAACTGG
25911648 ATTATTATTG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 20 0.71
34 8 0.29
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (34 bp):
ACTGAAATGGGCTAAGGCCCACACTGAAACTGGT
Found at i:25922558 original size:6 final size:6
Alignment explanation
Indices: 25922547--25922578 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
25922537 AATTGAGAAT
*
25922547 TGTGTA TGTGTA TATGTA TGTGTA TGTGTA TG
1 TGTGTA TGTGTA TGTGTA TGTGTA TGTGTA TG
25922579 AAAATGCATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (6 bp):
TGTGTA
Found at i:25926390 original size:42 final size:43
Alignment explanation
Indices: 25926289--25926448 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
25926279 AGCTCATACA
* * *
25926289 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATCG
* * * *
25926332 ATGCCACTATCCCAGACAGGGTTTTACACGAAATCATATAT-G
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
* *
25926374 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAA-ATCG
1 ATGCCAATGTCCCAGACAGGGTCTTACAC-GAAATCA-AATATCG
* * *
25926418 ATGCCAACGTCTCAGA-TGTGGTCTTACACGA
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGA
25926449 TAACACATAT
Statistics
Matches: 94, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
42 26 0.28
43 41 0.44
44 27 0.29
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATCG
Found at i:25932541 original size:176 final size:176
Alignment explanation
Indices: 25932242--25932594 Score: 688
Period size: 176 Copynumber: 2.0 Consensus size: 176
25932232 TCGGGACCAC
25932242 GAATTTGAGTTAAAAAATTATTTTAATATTATTTTCTATGTTTACAGCATGGTTTGTGATATGTG
1 GAATTTGAGTTAAAAAATTATTTTAATATTATTTTCTATGTTTACAGCATGGTTTGTGATATGTG
25932307 TGAAAGTTTCGTGTGCTAATTTTACCCTTTGTGTGTTTAAATTGTAAAAAGAACTTAATCGCGTA
66 TGAAAGTTTCGTGTGCTAATTTTACCCTTTGTGTGTTTAAATTGTAAAAAGAACTTAATCGCGTA
25932372 AAATGCGAAAGTGGCATTCCATAAGTTAAAGGTGTTTATTTTCAAT
131 AAATGCGAAAGTGGCATTCCATAAGTTAAAGGTGTTTATTTTCAAT
25932418 GAATTTGAGTTAAAAAATTATTTTAATATTATTTTCTATGTTTACAGCATGGTTTGTGATATGTG
1 GAATTTGAGTTAAAAAATTATTTTAATATTATTTTCTATGTTTACAGCATGGTTTGTGATATGTG
*
25932483 TGAAAGTTTCGTGTGCTAATTTTACCCTTTGTGTGTTTAAATTGTAAAAAGGACTTAATCGCGTA
66 TGAAAGTTTCGTGTGCTAATTTTACCCTTTGTGTGTTTAAATTGTAAAAAGAACTTAATCGCGTA
*
25932548 AAATGCGAAAGTGGCATTCCATAAGTTAAAGGTGTTTCTTTTCAAT
131 AAATGCGAAAGTGGCATTCCATAAGTTAAAGGTGTTTATTTTCAAT
25932594 G
1 G
25932595 GCTTATTAAA
Statistics
Matches: 175, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
176 175 1.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (176 bp):
GAATTTGAGTTAAAAAATTATTTTAATATTATTTTCTATGTTTACAGCATGGTTTGTGATATGTG
TGAAAGTTTCGTGTGCTAATTTTACCCTTTGTGTGTTTAAATTGTAAAAAGAACTTAATCGCGTA
AAATGCGAAAGTGGCATTCCATAAGTTAAAGGTGTTTATTTTCAAT
Found at i:25939366 original size:4 final size:4
Alignment explanation
Indices: 25939353--25939392 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
25939343 AGATTCTTCA
25939353 AATT -ATT AATT AATT AATT AATT AATT AATT AATT AATT A
1 AATT AATT AATT AATT AATT AATT AATT AATT AATT AATT A
25939393 GAGTTCGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 3 0.09
4 32 0.91
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
AATT
Found at i:25939531 original size:16 final size:18
Alignment explanation
Indices: 25939504--25939536 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25939494 TAGAATTAGG
25939504 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
25939521 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
25939537 TTTAGTTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:25939551 original size:18 final size:17
Alignment explanation
Indices: 25939528--25939567 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
25939518 TAATTGAGAA
* *
25939528 ATTAATTTATTTAGTTTG
1 ATTAATTAAATTAG-TTG
25939546 ATTAATTAAATTAGTTG
1 ATTAATTAAATTAGTTG
25939563 ATTAA
1 ATTAA
25939568 ATAATATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.53
Consensus pattern (17 bp):
ATTAATTAAATTAGTTG
Found at i:25940809 original size:23 final size:24
Alignment explanation
Indices: 25940770--25940814 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
25940760 TTGAACATAT
*
25940770 AAACCCAATATATAAACTCATTTA
1 AAACCCAAAATATAAACTCATTTA
25940794 AAACCCAAAATA-AAACTCATT
1 AAACCCAAAATATAAACTCATT
25940815 AATTCTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.24
Consensus pattern (24 bp):
AAACCCAAAATATAAACTCATTTA
Done.