Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 87 of 433
Found at i:25949301 original size:25 final size:25
Alignment explanation
Indices: 25949273--25949325 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
25949263 GAAATCCTTG
25949273 ATATGTAAGCATGAATTGATGAGAC
1 ATATGTAAGCATGAATTGATGAGAC
25949298 ATATGTAAGCATGAATTGATGAGAC
1 ATATGTAAGCATGAATTGATGAGAC
25949323 ATA
1 ATA
25949326 CATGGCATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.28
Consensus pattern (25 bp):
ATATGTAAGCATGAATTGATGAGAC
Found at i:25951795 original size:32 final size:33
Alignment explanation
Indices: 25951759--25951826 Score: 84
Period size: 32 Copynumber: 2.1 Consensus size: 33
25951749 AATATTGTAT
**
25951759 AATACATATTTATTAAGCATTAAA-TAAAATAA
1 AATACATATGCATTAAGCATTAAATTAAAATAA
* * *
25951791 AATACATATGCGTTAAGTATTAAATTAAATTAA
1 AATACATATGCATTAAGCATTAAATTAAAATAA
25951824 AAT
1 AAT
25951827 TAAAAATTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
32 20 0.67
33 10 0.33
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.35
Consensus pattern (33 bp):
AATACATATGCATTAAGCATTAAATTAAAATAA
Found at i:25952403 original size:149 final size:147
Alignment explanation
Indices: 25952223--25952489 Score: 399
Period size: 149 Copynumber: 1.8 Consensus size: 147
25952213 TTTAAAATAA
* ** * * *
25952223 AACATATAATAAATAAAGAAATGTATAGTTTGAAACTAACTAATAATAGCACACGGAATATGTAT
1 AACATACAATAAATAAAGAAACCTATAGTTTGAAACTAACTAATAATAACAAACGAAATATGTAT
*
25952288 GATATTAAAATGAAAAAAAAGAATAAATTAAATTGCGAGGGAAATGAATTTTAAACACGTAAATA
66 GATATTAAAATG--AAAAAAGAATAAATTAAATTGCGAGCGAAATGAATTTTAAACACGTAAATA
25952353 CATCATATTAAGAATAAAT
129 CATCATATTAAGAATAAAT
* * * *
25952372 AACATACAATAAATAAAGAAACCTATGGTTTGAAATTAATTAATAATAACAAATGAAATATGTAT
1 AACATACAATAAATAAAGAAACCTATAGTTTGAAACTAACTAATAATAACAAACGAAATATGTAT
* *
25952437 GATATTAAAATGAAAAAAGAATAAATTAAATTGTGAGCGACATGAATTTTAAA
66 GATATTAAAATGAAAAAAGAATAAATTAAATTGCGAGCGAAATGAATTTTAAA
25952490 TATATAAATA
Statistics
Matches: 105, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
147 38 0.36
149 67 0.64
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (147 bp):
AACATACAATAAATAAAGAAACCTATAGTTTGAAACTAACTAATAATAACAAACGAAATATGTAT
GATATTAAAATGAAAAAAGAATAAATTAAATTGCGAGCGAAATGAATTTTAAACACGTAAATACA
TCATATTAAGAATAAAT
Found at i:25953714 original size:30 final size:31
Alignment explanation
Indices: 25953678--25953743 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 31
25953668 TGTTTTTGTT
*
25953678 ATAAAATAAAGAGAGAAGGAAAGAATAAA-A
1 ATAAAATAAAAAGAGAAGGAAAGAATAAAGA
*
25953708 ATAAAATAAAAAGAGATGGAAAGAATAAAGA
1 ATAAAATAAAAAGAGAAGGAAAGAATAAAGA
25953739 ATAAA
1 ATAAA
25953744 GAAAATATGA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 27 0.82
31 6 0.18
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (31 bp):
ATAAAATAAAAAGAGAAGGAAAGAATAAAGA
Found at i:25955904 original size:46 final size:43
Alignment explanation
Indices: 25955806--25955934 Score: 140
Period size: 46 Copynumber: 3.0 Consensus size: 43
25955796 CTTTTATTCA
* * *
25955806 TTCACCGGCATT-TTGCCTACTAGGCTCG--AGGCCCGATATCAT
1 TTCACCGGCATTATAG-CTGCTAGGCTCGAAAGGCCCGA-ATAAT
25955848 TTCACCGGCATTATAGCATGCTAGGCTCGAAAGGCCCGAATAAT
1 TTCACCGGCATTATAGC-TGCTAGGCTCGAAAGGCCCGAATAAT
*
25955892 GTCTCACCGGCATAATAGTCTGCTAGGCTC-AAAGGCCCGAATA
1 -T-TCACCGGCATTATAG-CTGCTAGGCTCGAAAGGCCCGAATA
25955935 TAATACCAGT
Statistics
Matches: 76, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
42 13 0.17
43 12 0.16
44 4 0.05
45 22 0.29
46 24 0.32
47 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (43 bp):
TTCACCGGCATTATAGCTGCTAGGCTCGAAAGGCCCGAATAAT
Found at i:25955993 original size:38 final size:38
Alignment explanation
Indices: 25955927--25956087 Score: 223
Period size: 38 Copynumber: 4.2 Consensus size: 38
25955917 GGCTCAAAGG
* * * *
25955927 CCCGAATATAATACCAGTACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
25955965 CCCGGATATGATACTAGTACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
25956003 CCCGGATACAATACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
25956041 CCCTGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
25956079 CCCGAATAT
1 CCCGGATAT
25956088 CATATTTCGA
Statistics
Matches: 108, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 108 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:25972609 original size:40 final size:39
Alignment explanation
Indices: 25972428--25972609 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
25972418 GACTCGCTCA
** * **
25972428 AATGCCTTCGGGACGAAGCCCGGTTATAGCGACTTGCAC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * *
25972467 GAATGCCTTCGGGACTTAACCCGGGTTTAGTAACTTGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
* * * *
25972507 AATGCCTTCGGG-CTTAGCCCGGATTTATTAACTCGCATG
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA-C
* * *
25972546 AATGCCTTC-GGATCCTAGTCCGGATATAGTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTT-GCAC
*
25972586 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
25972610 CATCATTCGA
Statistics
Matches: 115, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
38 23 0.20
39 21 0.18
40 65 0.57
41 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCAC
Found at i:25974153 original size:29 final size:29
Alignment explanation
Indices: 25974063--25974222 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
25974053 ACTCGATTTC
* * **
25974063 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
25974092 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
25974120 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
25974150 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25974179 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
25974208 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
25974223 ATCTCGTCAC
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:25978714 original size:28 final size:27
Alignment explanation
Indices: 25978649--25978718 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
25978639 ATAGTGAGTC
*
25978649 CGCACACTTAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTATATAATCAACT
25978676 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
25978704 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25978719 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 23 0.56
28 18 0.44
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:25986523 original size:27 final size:28
Alignment explanation
Indices: 25986492--25986562 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 28
25986482 ATATAGTGAG
**
25986492 TCGCACACTTAGTGCTATATAATC-TGC
1 TCGCACACTTAGTGCTATATAATCAAAC
*
25986519 TCGCACACTTAGTGCTATATAATCAAAT
1 TCGCACACTTAGTGCTATATAATCAAAC
25986547 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
25986563 GTACAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.60
28 16 0.40
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.32
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATATAATCAAAC
Found at i:25992445 original size:15 final size:15
Alignment explanation
Indices: 25992403--25992448 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
25992393 TACTTACTAT
*
25992403 AAAATAAATAAATTTA
1 AAAATAAAT-AACTTA
*
25992419 AAACT-AAT-ACTTA
1 AAAATAAATAACTTA
25992432 AAAATAAATAACTTA
1 AAAATAAATAACTTA
25992447 AA
1 AA
25992449 TTATAGTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
13 8 0.32
14 3 0.12
15 10 0.40
16 4 0.16
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAATAAATAACTTA
Found at i:25993314 original size:31 final size:32
Alignment explanation
Indices: 25993279--25993339 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
25993269 AACATCTAAT
*
25993279 AAATATCTTTT-ATTAATTAATA-ATAAATATA
1 AAATATCTTTTCACTAATT-ATACATAAATATA
25993310 AAATATCTTTTCACTAATTATACATAAATA
1 AAATATCTTTTCACTAATTATACATAAATA
25993340 ATTCAAATGT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (32 bp):
AAATATCTTTTCACTAATTATACATAAATATA
Found at i:25996686 original size:13 final size:13
Alignment explanation
Indices: 25996668--25996702 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
25996658 TTACAAATGT
25996668 TTTTGAAAAGTGC
1 TTTTGAAAAGTGC
*
25996681 TTTTGAAAGGTGC
1 TTTTGAAAAGTGC
25996694 TTTTGAAAA
1 TTTTGAAAA
25996703 TTTTGATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.31, C:0.06, G:0.23, T:0.40
Consensus pattern (13 bp):
TTTTGAAAAGTGC
Found at i:25997574 original size:9 final size:9
Alignment explanation
Indices: 25997558--25997588 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
25997548 TAAATGAATT
25997558 AAAA-AGCC
1 AAAATAGCC
25997566 AAAATAGCC
1 AAAATAGCC
25997575 AAAATAGCC
1 AAAATAGCC
25997584 AAAAT
1 AAAAT
25997589 TTGGTCATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.18
9 18 0.82
ACGTcount: A:0.61, C:0.19, G:0.10, T:0.10
Consensus pattern (9 bp):
AAAATAGCC
Found at i:26001820 original size:40 final size:40
Alignment explanation
Indices: 26001775--26001851 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
26001765 GAAAAGAAAG
* *
26001775 TAAACTTTTAATATGGTTATTAAAAGCTTATGTACATATA
1 TAAACTTGTAATATGGTTATTAAAAGCTTATATACATATA
26001815 TAAACTTGTAATATGGTTATTAAAAGCTTATATACAT
1 TAAACTTGTAATATGGTTATTAAAAGCTTATATACAT
26001852 TTATGTTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (40 bp):
TAAACTTGTAATATGGTTATTAAAAGCTTATATACATATA
Found at i:26002344 original size:13 final size:13
Alignment explanation
Indices: 26002326--26002359 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26002316 GCTGTGTGAG
26002326 CCACACGGCTTAC
1 CCACACGGCTTAC
26002339 CCACACGGCTTAC
1 CCACACGGCTTAC
26002352 CCACACGG
1 CCACACGG
26002360 GCGTGTGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.24, C:0.47, G:0.18, T:0.12
Consensus pattern (13 bp):
CCACACGGCTTAC
Found at i:26005967 original size:15 final size:16
Alignment explanation
Indices: 26005947--26005983 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
26005937 CCACTATCAA
26005947 TAATAAAATGA-GACT
1 TAATAAAATGACGACT
*
26005962 TAAT-AATTGACGACT
1 TAATAAAATGACGACT
26005977 TAATAAA
1 TAATAAA
26005984 TGTATATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 5 0.26
15 12 0.63
16 2 0.11
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.30
Consensus pattern (16 bp):
TAATAAAATGACGACT
Found at i:26007799 original size:321 final size:316
Alignment explanation
Indices: 26007206--26008084 Score: 1052
Period size: 327 Copynumber: 2.7 Consensus size: 316
26007196 AATCCCTCTG
* * * *
26007206 TTATGCTTACATTTAAGATTTAAG-ATTTATATTTTAATTTCACATAATTTGATTTTCTACTTTT
1 TTATGCTCACATTTGAGATTT-AGTCTTTATATTTTAATTTGACATAATTTGATTTTCTACTTTT
* *
26007270 ACAATCACATTAGGTACTCCAAATAATTAACATCTTTAGCTATTCTGATTAAATTTGTTATTCTA
65 ACAATGACATTAGGTAGTCCAAATAATTAACATCTTTAGCTATTCTGATTAAA--T-TT-TT-TA
* * * * * *
26007335 TTTTTTTTAAAAAAATGCTATTCTATAAAAAAATTTATTTTGGTATGATGATTTGTAATAAGTAT
125 TTATTTTT-AAAAAATGCTATTATATAAAAAAA-TTATATTGGCATAATGATTTGGAATAAGTAT
* * * *
26007400 TAATAAAAAAAAATCACATAATCAACTAAAAATATTAAGGGTGTTAATTATTTAGATCAATAATG
188 T-ATTAAAAAAATTCACATCATCTACTAAAAATATTAAGGGTGTTAATTATTTAGATCAATAATG
* *
26007465 ACATGACTC-T-T-TTTTTTTAGCCATTATAAGATAATAATAAAATAGTAGTTTTGACCTTTCTA
252 ACATGACTCTTCTATTTTTTTAACCATTATAAGATAATAATAAAATAGTAATTTTGACCTTTCTA
* *
26007527 TTATGCTGACATTTGAGATTTAGTCTTTTTATTTTAATTTGACATAATTTGATTTTCTACTTTTA
1 TTATGCTCACATTTGAGATTTAGTCTTTATATTTTAATTTGACATAATTTGATTTTCTACTTTTA
* * * *
26007592 CAATGACATTAGGTAGTCCAACTAATTAACATATTTAAC-AGTTCTGATTAAATTTTTTAGTATT
66 CAATGACATTAGGTAGTCCAAATAATTAACATCTTTAGCTA-TTCTGATTAAATTTTTTATTATT
*
26007656 TTTAAAAAATGCTATTATATCAAAAAAATTATATTGGCATAATGATTTGGAATAAGCATTATTAA
130 TTTAAAAAATGCTATTATAT-AAAAAAATTATATTGGCATAATGATTTGGAATAAGTATTATTAA
* * * *
26007721 AAAAATTCACATCATTTATTAAAAATAGTTAAGGGT-TCTAATTATTTAGATCAATGATGACATT
194 AAAAATTCACATCATCTACTAAAAATA-TTAAGGGTGT-TAATTATTTAGATCAATAATGACATG
* * * *
26007785 ACTTCTTTTCTTTTTCTATTTTTTTAATCATTATAAGATAATGATAAAATGGTAATTTTGATCTT
257 A---C---TC---TTCTATTTTTTTAACCATTATAAGATAATAATAAAATAGTAATTTTGACCTT
26007850 TCTA
313 TCTA
* * * *
26007854 TTATGCTCACATTTGATATTTAGTCATTATATTTTAATTTGACATAATTTGGTTTTTTACTTTTA
1 TTATGCTCACATTTGAGATTTAGTCTTTATATTTTAATTTGACATAATTTGATTTTCTACTTTTA
* * * * *
26007919 CGATGACATTAGGTAGTCTAAATAATTAACAGCTTTAGCTATTTTGATTAAATTTTTTATTCAAT
66 CAATGACATTAGGTAGTCCAAATAATTAACATCTTTAGCTATTCTGATTAAATTTTTTATT-ATT
* ** * * *
26007984 TTTATTAAAATGCTATTATATAAAAAAATTATATTCACAAAATGATTTGGCATAAGTATTGTTAA
130 TTTA-AAAAATGCTATTATATAAAAAAATTATATTGGCATAATGATTTGGAATAAGTATTATTAA
26008049 AAATAATTCACATCATCTACT-AAAATATTAAGGGTG
194 AAA-AATTCACATCATCTACTAAAAATATTAAGGGTG
26008085 CTAGTTGTAA
Statistics
Matches: 480, Mismatches: 56, Indels: 37
0.84 0.10 0.06
Matches are distributed among these distances:
314 27 0.06
315 76 0.16
316 15 0.03
317 2 0.00
318 3 0.01
319 1 0.00
320 3 0.01
321 104 0.22
325 1 0.00
326 1 0.00
327 163 0.34
328 54 0.11
329 30 0.06
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (316 bp):
TTATGCTCACATTTGAGATTTAGTCTTTATATTTTAATTTGACATAATTTGATTTTCTACTTTTA
CAATGACATTAGGTAGTCCAAATAATTAACATCTTTAGCTATTCTGATTAAATTTTTTATTATTT
TTAAAAAATGCTATTATATAAAAAAATTATATTGGCATAATGATTTGGAATAAGTATTATTAAAA
AAATTCACATCATCTACTAAAAATATTAAGGGTGTTAATTATTTAGATCAATAATGACATGACTC
TTCTATTTTTTTAACCATTATAAGATAATAATAAAATAGTAATTTTGACCTTTCTA
Found at i:26009442 original size:43 final size:43
Alignment explanation
Indices: 26009395--26009476 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
26009385 GATACATGTG
*
26009395 GCATCCGAGCCCGTTGAATGG-TCTGAGTTCATTATGGATACGA
1 GCATCCGAGCCCGTTGAATGGTTC-GAGTTCATAATGGATACGA
** *
26009438 GCATCCGAGTTCGTTGAGTGGTTCGAGTTCATAATGGAT
1 GCATCCGAGCCCGTTGAATGGTTCGAGTTCATAATGGAT
26009477 GTGATACTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 32 0.94
44 2 0.06
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCCCGTTGAATGGTTCGAGTTCATAATGGATACGA
Found at i:26016805 original size:16 final size:16
Alignment explanation
Indices: 26016784--26016821 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
26016774 TTGATTTCTT
26016784 CAAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAAA
* *
26016800 CAAAAACAAAACAAAA
1 CAAAAAAAAAAAAAAA
26016816 CAAAAA
1 CAAAAA
26016822 TGTTGATCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAAAAAAA
Found at i:26016978 original size:15 final size:15
Alignment explanation
Indices: 26016960--26016997 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
26016950 AATGTGTTTG
26016960 ATATAAAAAAAATTT
1 ATATAAAAAAAATTT
*
26016975 ATAT-ATAAAAATTT
1 ATATAAAAAAAATTT
26016989 A-ATAAAAAA
1 ATATAAAAAA
26016998 TTATTGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
13 2 0.10
14 14 0.70
15 4 0.20
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATATAAAAAAAATTT
Found at i:26019275 original size:13 final size:13
Alignment explanation
Indices: 26019259--26019283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26019249 AATAAACATC
26019259 TTAAATTAATTTG
1 TTAAATTAATTTG
26019272 TTAAATTAATTT
1 TTAAATTAATTT
26019284 CTCAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (13 bp):
TTAAATTAATTTG
Found at i:26021677 original size:49 final size:49
Alignment explanation
Indices: 26021579--26021749 Score: 150
Period size: 49 Copynumber: 3.5 Consensus size: 49
26021569 AATGCTGACA
* * ** * * *
26021579 CCATGTCCCAGACATGGTCTTACACTGGCTAGCA-C-ATCGAAGTCGATG
1 CCATGTCCCAGATA-GGTCTTACACTGACTCTCATCTATCGATGCCAATG
* * *
26021627 CCATGTCCCAAATAGGTCTTACGCTGACTTTCATAC-ATCGATGCCAATG
1 CCATGTCCCAGATAGGTCTTACACTGACTCTCAT-CTATCGATGCCAATG
* * * * * * *
26021676 CCGTGTCACAGACAGGTCTTACACTGGCTCTCATCTATTGATGTCGATG
1 CCATGTCCCAGATAGGTCTTACACTGACTCTCATCTATCGATGCCAATG
26021725 CCATGTCCCAGATAGGTCTTACACT
1 CCATGTCCCAGATAGGTCTTACACT
26021750 AACACTCAAC
Statistics
Matches: 98, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
47 15 0.15
48 13 0.13
49 70 0.71
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
CCATGTCCCAGATAGGTCTTACACTGACTCTCATCTATCGATGCCAATG
Found at i:26021836 original size:48 final size:48
Alignment explanation
Indices: 26021762--26021890 Score: 149
Period size: 46 Copynumber: 2.7 Consensus size: 48
26021752 CACTCAACAA
* * *
26021762 GCTGATGCCATGTCCTAGACAGGTCTTACACTAGCTTGT-AT-ATCTTGAG
1 GCTGATG-CATGTCCTAGACATGTCTTACACTAGCTTCTCATAAT-ATG-G
*
26021811 GCTGATGTATGTCCTAGACATGTCTTACACTAG-TTCTCATAATATGG
1 GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTCTCATAATATGG
* *
26021858 TC-GATGCATGTCCCAGACATGTCTTACACTAGC
1 GCTGATGCATGTCCTAGACATGTCTTACACTAGC
26021891 ACACATATCA
Statistics
Matches: 70, Mismatches: 7, Indels: 8
0.82 0.08 0.09
Matches are distributed among these distances:
46 28 0.40
47 5 0.07
48 28 0.40
49 9 0.13
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (48 bp):
GCTGATGCATGTCCTAGACATGTCTTACACTAGCTTCTCATAATATGG
Found at i:26034065 original size:66 final size:66
Alignment explanation
Indices: 26033959--26034087 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
26033949 TAACATAACA
* * *
26033959 TACATGAGACTTCCTATAGCCAAAGCATACAAAACCTTTCTCATGTTTTCTTTTTCTTTCACTTT
1 TACATAAGACTTCCTATAGCCAAAGCATACAAAACCTTTCTCATGTTCTCTCTTTCTTTCACTTT
26034024 C
66 C
* * * *
26034025 TACATAAGTCTTCCTACT-GCCAAAGTATACAGAATCTTTCTCATGTTCTCTCTTTCTTTCACT
1 TACATAAGACTTCCTA-TAGCCAAAGCATACAAAACCTTTCTCATGTTCTCTCTTTCTTTCACT
26034088 GTATTAGGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 54 0.98
67 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.08, T:0.41
Consensus pattern (66 bp):
TACATAAGACTTCCTATAGCCAAAGCATACAAAACCTTTCTCATGTTCTCTCTTTCTTTCACTTT
C
Found at i:26036848 original size:38 final size:38
Alignment explanation
Indices: 26036806--26037008 Score: 370
Period size: 38 Copynumber: 5.3 Consensus size: 38
26036796 ATAGACATGC
26036806 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
26036844 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
*
26036882 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
*
26036920 ATGTTCGGCCATATGAATGAGTGCATAAGTTGATGTGT
1 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
* *
26036958 ATGTTTGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
26036996 ATGTTCGGCCATA
1 ATGTTCGGCCATA
26037009 GGTAAGCATA
Statistics
Matches: 157, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 157 1.00
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (38 bp):
ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
Found at i:26037694 original size:40 final size:40
Alignment explanation
Indices: 26037600--26037824 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 40
26037590 TATTCGAATG
* *
26037600 ATATCCAGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
26037641 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
26037681 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
26037721 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
26037761 ACATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
26037801 ATATCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
26037825 CTTGTGCAAG
Statistics
Matches: 156, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 1 0.01
40 126 0.81
41 28 0.18
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:26037771 original size:80 final size:80
Alignment explanation
Indices: 26037602--26037860 Score: 281
Period size: 80 Copynumber: 3.2 Consensus size: 80
26037592 TTCGAATGAT
* * * * *
26037602 ATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGCAT
* *
26037667 TCGTGCGAGTTGCTAT
65 TCGTGCGAGTCGCTAC
* * *
26037683 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
* *
26037748 TGTGCTAG-CGACTAC
66 CGTGCGAGTCG-CTAC
* * * * *
26037763 ATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGTTAAGACCCAAAGGCCTT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
* * * *
26037828 -GTGCAAGTAGTTAT
66 CGTGCGAGTCGCTAC
*
26037842 ATCC-GGCTAAATCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
26037861 ATTACTTGAG
Statistics
Matches: 151, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 95 0.63
81 29 0.19
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCGAGTCGCTAC
Found at i:26037815 original size:120 final size:121
Alignment explanation
Indices: 26037600--26037824 Score: 296
Period size: 120 Copynumber: 1.9 Consensus size: 121
26037590 TATTCGAATG
* * * *
26037600 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTACAACCGGACTAAGATCCGAAGGC
* *
26037665 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
* * *
26037721 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTACATCCGGGCTAAG-TCCCGAAGG
1 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTACAACCGGACTAAGAT-CCGAAGG
* *
26037784 CA-TCTGTGCTAG-TGACCATATCCGGGTTAAGACCCAAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCAAAGGC
26037825 CTTGTGCAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
119 5 0.06
120 54 0.60
121 31 0.34
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTACAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCAAAGGCATTTGTGCTAGCGATT
Found at i:26042741 original size:30 final size:30
Alignment explanation
Indices: 26042686--26042875 Score: 255
Period size: 30 Copynumber: 6.5 Consensus size: 30
26042676 GTAGTGAATC
26042686 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
26042715 CGCGCACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
26042745 CGCACACTTAGTGCCATGTAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26042775 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
26042804 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
26042832 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26042862 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26042876 CAATCTTGTC
Statistics
Matches: 144, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.01
28 22 0.15
29 47 0.33
30 72 0.50
31 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:26042856 original size:87 final size:87
Alignment explanation
Indices: 26042685--26042875 Score: 271
Period size: 89 Copynumber: 2.2 Consensus size: 87
26042675 TGTAGTGAAT
* *
26042685 CCGCACACTTAGTGCTATATATTTTCAGCTCGCGCACTTAGTGCTATATAATTTTCAGCTCGCAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA--TTCAACTCGCAC
* *
26042750 ACTTAGTGCCATGTAATTTTCAGC
64 ACTTAGTGCCATGTAATTTTAAAC
*
26042774 TCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TCAAACTCGCACA
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTC-AACTCGCACA
26042838 CTTAGTG-C-TGTACAATTTTAAAC
65 CTTAGTGCCATGT--AATTTTAAAC
26042861 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
26042876 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
85 3 0.03
86 3 0.03
87 38 0.41
89 49 0.53
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (87 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTCAACTCGCACAC
TTAGTGCCATGTAATTTTAAAC
Found at i:26050709 original size:30 final size:30
Alignment explanation
Indices: 26050654--26050842 Score: 246
Period size: 30 Copynumber: 6.5 Consensus size: 30
26050644 GTAGTGAATC
26050654 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
26050683 CGCGCACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
26050713 CGCACACTTAGTGCCATGTAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26050743 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
26050772 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
26050800 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
26050830 CGCACACTT-GTGC
1 CGCACACTTAGTGC
26050843 CAATCTTGTC
Statistics
Matches: 143, Mismatches: 11, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.01
28 22 0.15
29 51 0.36
30 67 0.47
31 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:26058233 original size:40 final size:40
Alignment explanation
Indices: 26058177--26058344 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
26058167 CAATTGAATG
* *
26058177 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
26058218 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
26058257 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
26058297 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
26058337 ATATCCGG
1 ATATCCGG
26058345 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:26058310 original size:80 final size:79
Alignment explanation
Indices: 26058177--26058344 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
26058167 CAATTGAATG
* *
26058177 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
26058242 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
26058257 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
26058321 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
26058337 ATATCCGG
1 ATATCCGG
26058345 TTGTATTCCG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:26065240 original size:38 final size:38
Alignment explanation
Indices: 26065198--26065322 Score: 232
Period size: 38 Copynumber: 3.3 Consensus size: 38
26065188 ATAGACATGC
*
26065198 ATGTTCGGCCATATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
26065236 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
*
26065274 ATGTTCGGCCACATGAATAAGTACATAAGTTGATGTGT
1 ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
26065312 ATGTTCGGCCA
1 ATGTTCGGCCA
26065323 TAGGTAAGCA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 85 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.32
Consensus pattern (38 bp):
ATGTTCGGCCACATGAATGAGTACATAAGTTGATGTGT
Found at i:26066009 original size:40 final size:40
Alignment explanation
Indices: 26065915--26066139 Score: 276
Period size: 40 Copynumber: 5.6 Consensus size: 40
26065905 TATTCGAATG
*
26065915 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * *
26065956 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
26065996 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
26066036 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
26066076 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
*
26066116 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
26066140 CTTGTGCAAG
Statistics
Matches: 161, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 130 0.81
41 29 0.18
42 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:26066089 original size:80 final size:80
Alignment explanation
Indices: 26065915--26066173 Score: 326
Period size: 80 Copynumber: 3.2 Consensus size: 80
26065905 TATTCGAATG
* * * *
26065915 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
26065980 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * *
26065996 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
26066061 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * *
26066076 ATATCCGGGCTAAGTCCCGAAGGCATCTGTGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
26066141 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
26066155 ATATCC-GGCTAAATCCCGA
1 ATATCCGGGCTAAGTCCCGA
26066174 GGATTACTTA
Statistics
Matches: 156, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
78 12 0.08
79 14 0.09
80 98 0.63
81 32 0.21
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:26066129 original size:120 final size:121
Alignment explanation
Indices: 26065915--26066139 Score: 332
Period size: 120 Copynumber: 1.9 Consensus size: 121
26065905 TATTCGAATG
* * *
26065915 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
26065980 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* *
26066036 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
26066099 CA-TCTGTGCTAG-TGACCATATCCGGGCTAAGACCCGAAGGC
65 CATTC-GTGCGAGTTG-CCATATCCGGGCTAAGACCCGAAGGC
26066140 CTTGTGCAAG
Statistics
Matches: 94, Mismatches: 7, Indels: 7
0.87 0.06 0.06
Matches are distributed among these distances:
119 5 0.05
120 57 0.61
121 32 0.34
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCCATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:26084233 original size:17 final size:17
Alignment explanation
Indices: 26084211--26084260 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
26084201 ACTCGTTAAA
26084211 GCCCGATAAATGA-AAGT
1 GCCCGATAAATGATAA-T
* *
26084228 GCCCGATCAATTATAAT
1 GCCCGATAAATGATAAT
*
26084245 GCCCGACAAATGATAA
1 GCCCGATAAATGATAA
26084261 ATGATAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.40, C:0.22, G:0.18, T:0.20
Consensus pattern (17 bp):
GCCCGATAAATGATAAT
Found at i:26085484 original size:124 final size:124
Alignment explanation
Indices: 26085264--26085510 Score: 415
Period size: 124 Copynumber: 2.0 Consensus size: 124
26085254 TTATGCTTAT
*
26085264 TTTTATTTCCCTGTTTTATAGTAAATCAGAAGCTCGTTGGTTTGGAAGCTTGGCAGAGATCACTC
1 TTTTATTTCCCTGTTTTATAGTAAATCAGAAGCTCGTTGGATTGGAAGCTTGGCAGAGATCACTC
* *
26085329 ACACTATCCGTCGGACTATATTGGTCTATATGGTAAATCAATTATGGTTGTAATGGCAG
66 ACACTATCCATCGGACTATATTGGTCTATATGGTAAATCAATTATGGTTGTAAGGGCAG
*
26085388 TTTTATTTCCCTGTTTTATAGTAAATC-GAAAGCTCGTTGGATTGGAAGCTTGGCGGAGATCACT
1 TTTTATTTCCCTGTTTTATAGTAAATCAG-AAGCTCGTTGGATTGGAAGCTTGGCAGAGATCACT
* * *
26085452 CACACTATCCATTGGCCTATGTTGGTCTATATGGTAAATCAATTATGGTTGTAAGGGCA
65 CACACTATCCATCGGACTATATTGGTCTATATGGTAAATCAATTATGGTTGTAAGGGCA
26085511 TGTATAGGAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
123 1 0.01
124 114 0.99
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (124 bp):
TTTTATTTCCCTGTTTTATAGTAAATCAGAAGCTCGTTGGATTGGAAGCTTGGCAGAGATCACTC
ACACTATCCATCGGACTATATTGGTCTATATGGTAAATCAATTATGGTTGTAAGGGCAG
Found at i:26088330 original size:93 final size:93
Alignment explanation
Indices: 26088219--26088391 Score: 285
Period size: 93 Copynumber: 1.9 Consensus size: 93
26088209 CGCCCATAAG
* * *
26088219 CGAACTCGGACTCAACTCAACTAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTC
*
26088283 AATGAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
26088312 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26088377 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
26088392 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:26088379 original size:46 final size:46
Alignment explanation
Indices: 26088212--26088387 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
26088202 TGTAACCCGC
* * *
26088212 CCATAAGCGAACTCGGACTCAACTCAACTAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCAT
* * * * *
26088258 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
*
26088308 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
26088351 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
26088388 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 16
0.77 0.12 0.12
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 3 0.03
46 63 0.59
47 30 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:26088406 original size:46 final size:45
Alignment explanation
Indices: 26088263--26088406 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
26088253 CGCATCCATA
* * * *
26088263 AGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
26088311 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
26088356 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
26088402 AGTGA
1 AGTGA
26088407 CATGTCACTT
Statistics
Matches: 76, Mismatches: 15, Indels: 12
0.74 0.15 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.49
47 29 0.38
48 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:26091402 original size:50 final size:48
Alignment explanation
Indices: 26091327--26091701 Score: 364
Period size: 48 Copynumber: 7.7 Consensus size: 48
26091317 GGGTAAAATA
* * * *
26091327 CCGATGCCATGTCTCAAACATGGTCTTACACAGGCTTTCATATATCGGTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGC--ACATATATCAGTG
* * * * *
26091377 CCGATGCCATGTCCCAGACATGGTCTTACACTGACACGTATAACAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAGTG
* * * *
26091425 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGTATATTGAG-G
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATA-TCAGTG
* * * * * *
26091473 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAGTG
* *
26091521 CCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATATATCAAG-G
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGG--CACATATATC-AGTG
* * * * *
26091571 CCGATACCATCTCCCAGACATGGTCTTACACTGGCTCACATATACCGGTG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGG--CACATATATCAGTG
* *
26091621 CCGATTCCATGTCCCAAACATGGTCTTACACT-G-ACACATATCAAG-G
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATC-AGTG
* *
26091667 CCGATGCCATGTCCCAAATAAGGTCTTACACTGGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTGGC
26091702 TCTCATATCG
Statistics
Matches: 268, Mismatches: 48, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
46 37 0.14
47 3 0.01
48 115 0.43
49 3 0.01
50 109 0.41
51 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTGGCACATATATCAGTG
Found at i:26091499 original size:96 final size:96
Alignment explanation
Indices: 26091327--26091699 Score: 430
Period size: 96 Copynumber: 3.8 Consensus size: 96
26091317 GGGTAAAATA
* *
26091327 CCGATGCCATG-TCTCAAACATGGTCTTACACAGGCTTTCATATATC-GGTGCCGATGCCATGTC
1 CCGATGCCATGTTC-CAAACATGGTCTTACACTGGC--TCATATATCAAG-GCCGATGCCATGTC
*
26091390 CCAGACATGGTCTTACACTGACACGTATAACAATG
62 CCAGACATGGTCTTACACTGACACATATAACAATG
* ** *
26091425 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCGTATATTGAGGCCAATGCCATGTCCCAG
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCAAGGCCGATGCCATGTCCCAG
* * *
26091490 ACATGGTCTTACACTGGCTCACATAACAATG
66 ACATGGTCTTACACTGACACATATAACAATG
* * *
26091521 CCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATATATCAAGGCCGATACCATCTCCC
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCT--CATATATCAAGGCCGATGCCATGTCCC
* * **
26091586 AGACATGGTCTTACACTGGCTCACATATACCGGTG
64 AGACATGGTCTTACACT-G-ACACATATAACAATG
* * * * *
26091621 CCGATTCCATGTCCCAAACATGGTCTTACACT-G-ACACATATCAAGGCCGATGCCATGTCCCAA
1 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCAAGGCCGATGCCATGTCCCAG
* *
26091684 ATAAGGTCTTACACTG
66 ACATGGTCTTACACTG
26091700 GCTCTCATAT
Statistics
Matches: 237, Mismatches: 32, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
95 1 0.00
96 124 0.52
97 1 0.00
98 69 0.29
99 4 0.02
100 38 0.16
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (96 bp):
CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCATATATCAAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACACATATAACAATG
Found at i:26091594 original size:146 final size:147
Alignment explanation
Indices: 26091330--26091709 Score: 430
Period size: 146 Copynumber: 2.6 Consensus size: 147
26091320 TAAAATACCG
* * * ** *
26091330 ATGCCATGTCTCAAACATGGTCTTACACAGGCTTTCATATATCGGTGCCGATGCCATGTCCCAGA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGC--TCACATATCAATGCCGATGCCATGTCCCAAA
* * * * * *
26091395 CATGGTCTTACACT-G-ACACGTATAACAATGCCGATGCCATGTTCCAAACATGGTCTTACACTG
64 CATGGTCTTACACTGGCTCACATATAACAAGGCCGATACCATCTCCCAAACATGGTCTTACACTG
* **
26091458 GCT-CGTATATTGAG-GCCA
129 GCTACATATACCG-GTGCCA
* * * *
26091476 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGCCGATGCCATGTTCTAAACA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGCCGATGCCATGTCCCAAACA
* *
26091541 TGGTCTTACACTGGCTCACATATATCAAGGCCGATACCATCTCCCAGACATGGTCTTACACTGGC
66 TGGTCTTACACTGGCTCACATATAACAAGGCCGATACCATCTCCCAAACATGGTCTTACACTGGC
*
26091606 TCACATATACCGGTGCCG
131 T-ACATATACCGGTGCCA
* * * *
26091624 ATTCCATGTCCCAAACATGGTCTTACACT-G-ACACATATCAAGGCCGATGCCATGTCCCAAATA
1 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGCCGATGCCATGTCCCAAACA
* *
26091687 AGGTCTTACACTGGCTCTCATAT
66 TGGTCTTACACTGGCTCACATAT
26091710 CGCCATGGTC
Statistics
Matches: 197, Mismatches: 32, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
144 38 0.19
145 1 0.01
146 120 0.61
147 2 0.01
148 36 0.18
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (147 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATATCAATGCCGATGCCATGTCCCAAACA
TGGTCTTACACTGGCTCACATATAACAAGGCCGATACCATCTCCCAAACATGGTCTTACACTGGC
TACATATACCGGTGCCA
Found at i:26095530 original size:35 final size:35
Alignment explanation
Indices: 26095484--26095554 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
26095474 TAAAGCATGA
26095484 CTTCTAATTATCTCTGGTTAATTTATGGTAAATTT
1 CTTCTAATTATCTCTGGTTAATTTATGGTAAATTT
26095519 CTTCTAATTATCTCTGGTTAATTTATGGTAAATTT
1 CTTCTAATTATCTCTGGTTAATTTATGGTAAATTT
26095554 C
1 C
26095555 CAAATTCAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (35 bp):
CTTCTAATTATCTCTGGTTAATTTATGGTAAATTT
Found at i:26096795 original size:42 final size:41
Alignment explanation
Indices: 26096686--26096888 Score: 173
Period size: 41 Copynumber: 4.9 Consensus size: 41
26096676 CGACTCTTAG
* *
26096686 CACTGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATGAC
** * * *
26096727 CACTGGCTCGCAGGCCCTTAGGAACTAAGTCCGGTTATGA-
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATGAC
* * *
26096767 CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTCGGTTATTAG
1 CACTGGCTC--AAAAGCCCTTCGAAACTAAGTCCGGTTATGAC
* *
26096810 CACTGGCTCAAAAGCCCTTCGAGACCAAG-CTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTC-CGG-TTATGAC
** * *
26096851 CACTGGCTCGCAGGCCCTTCGGAACTAAGTCCGGTTAT
1 CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTAT
26096889 CCACAAGATT
Statistics
Matches: 128, Mismatches: 25, Indels: 18
0.75 0.15 0.11
Matches are distributed among these distances:
40 15 0.12
41 75 0.59
42 29 0.23
43 9 0.07
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATGAC
Found at i:26101059 original size:42 final size:41
Alignment explanation
Indices: 26100958--26101160 Score: 159
Period size: 41 Copynumber: 4.9 Consensus size: 41
26100948 CGACTCTTAG
*
26100958 CACTGGCTCAAAAGCCCTT-GGAGACCAAG-CTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGGA-ACTAAGTC-CGG-TTATGAC
* **
26100999 CATTGGCTCGCAAGCCCTTCGGAACTAAGTCCGGTTATGA-
1 CACTGGCTCAAAAGCCCTTCGGAACTAAGTCCGGTTATGAC
* ** * *
26101039 CACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTTGGTTATTAG
1 CACTGGCTC--AAAAGCCCTTCGGAACTAAGTCCGGTTATGAC
26101082 CACTGGCTCAAAAGCCCTTC-GAGACTAAG-CTCGGATTA-GAC
1 CACTGGCTCAAAAGCCCTTCGGA-ACTAAGTC-CGG-TTATGAC
* ** * *
26101123 CACTGGCCCCCAGGGCCTTCGGAACTAAGTCCGGTTAT
1 CACTGGCTCAAAAGCCCTTCGGAACTAAGTCCGGTTAT
26101161 CCACAAGATT
Statistics
Matches: 129, Mismatches: 21, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
40 15 0.12
41 70 0.54
42 35 0.27
43 9 0.07
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (41 bp):
CACTGGCTCAAAAGCCCTTCGGAACTAAGTCCGGTTATGAC
Found at i:26101127 original size:41 final size:40
Alignment explanation
Indices: 26100954--26101129 Score: 164
Period size: 41 Copynumber: 4.3 Consensus size: 40
26100944 AGTCCGACTC
* *
26100954 TTAG-CACTGGCTCAAAAGCCCTTGGAGACCAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
* **
26100993 TTAGACCATTGGCTCGCAAGCCCTTCG-GAACTAAG-TCCGG-
1 TTAGA-CACTGGCTCAAAAGCCCTTCGAG-ACTAAGCT-CGGA
* * *
26101033 TTATGACACTGGCTCTAAAAAGCCCTTCGAAACTAAGTTTGGTTA
1 TTA-GACACTGGCTC--AAAAGCCCTTCGAGACTAAGCTCGG--A
26101078 TTAG-CACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
1 TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
26101117 TTAGACCACTGGC
1 TTAGA-CACTGGC
26101130 CCCCAGGGCC
Statistics
Matches: 110, Mismatches: 13, Indels: 26
0.74 0.09 0.17
Matches are distributed among these distances:
39 9 0.08
40 13 0.12
41 56 0.51
42 18 0.16
43 10 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
TTAGACACTGGCTCAAAAGCCCTTCGAGACTAAGCTCGGA
Found at i:26113869 original size:123 final size:123
Alignment explanation
Indices: 26113650--26113988 Score: 588
Period size: 123 Copynumber: 2.8 Consensus size: 123
26113640 GAATTATGTG
26113650 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
26113715 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGCAACGA
26113773 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
26113838 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGCAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGCAACGA
** * * * *
26113896 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
26113961 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
26113989 AATTATATCC
Statistics
Matches: 206, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
123 206 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGCAACGA
Found at i:26114012 original size:40 final size:40
Alignment explanation
Indices: 26113957--26114104 Score: 179
Period size: 40 Copynumber: 3.7 Consensus size: 40
26113947 TGAATGATAC
* * *
26113957 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
* * * *
26113997 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
* * **
26114037 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
* *
26114077 CCGGGCTAAGACCCGAGGGCATTCGTGC
1 CCGGGCTAAGACCCGAAGGCATTTGTGC
26114105 GTGTGGTTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAATTATAT
Found at i:26121141 original size:123 final size:123
Alignment explanation
Indices: 26120922--26121260 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
26120912 GAATTATGTG
26120922 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
*
26120987 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
26121045 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
26121110 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
** * * * *
26121168 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGCATGAGCAATTGAATGATACCCGG
1 AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
* *
26121233 GCTAAGTCCCGAAGACATTTATGCTAGT
66 GCTAAGTCCCGAAGGCAATTATGCTAGT
26121261 AATTATATCC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (123 bp):
AAATGAAATATGGATGTGTAATGATTATTGACATATGTGTGTATGAGTATTTGAATGGTACCCGG
GCTAAGTCCCGAAGGCAATTATGCTAGTGATATGTTTGTGTTCGAGCCTTAGTAACGA
Found at i:26121426 original size:40 final size:40
Alignment explanation
Indices: 26121229--26121432 Score: 237
Period size: 40 Copynumber: 5.1 Consensus size: 40
26121219 TGAATGATAC
* * * * **
26121229 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * * **
26121269 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
26121309 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* *
26121349 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
* * **
26121389 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
26121429 CCGG
1 CCGG
26121433 TTGTATTCCG
Statistics
Matches: 144, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 144 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGGTTATAT
Found at i:26126722 original size:28 final size:28
Alignment explanation
Indices: 26126690--26126797 Score: 90
Period size: 28 Copynumber: 3.9 Consensus size: 28
26126680 ATGTCATTGA
*
26126690 ATACTCGATATTTCGCACACTAAGGGCC
1 ATACTCGATATCTCGCACACTAAGGGCC
* * *
26126718 ATACTCGATGTCTCGCACACTATGTGCC
1 ATACTCGATATCTCGCACACTAAGGGCC
* * * * **
26126746 ATATTCAATGTCTCGTACACTAAATGCC
1 ATACTCGATATCTCGCACACTAAGGGCC
* * * *
26126774 ATATTCAATGTCTCTCACACTAAG
1 ATACTCGATATCTCGCACACTAAG
26126798 TGCTAAACTT
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (28 bp):
ATACTCGATATCTCGCACACTAAGGGCC
Found at i:26130110 original size:46 final size:46
Alignment explanation
Indices: 26130043--26130217 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
26130033 TGTAACCCGC
26130043 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
26130089 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * * *
26130139 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
26130182 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
26130218 ATGCCCAAAT
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:26130162 original size:93 final size:93
Alignment explanation
Indices: 26130050--26130222 Score: 301
Period size: 93 Copynumber: 1.9 Consensus size: 93
26130040 CGCCCATAAG
* * *
26130050 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
26130115 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
*
26130143 CGAACTCGGACTCAACTCAACGAGTTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
26130208 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
26130223 CAAATATCCA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:26137247 original size:45 final size:45
Alignment explanation
Indices: 26137183--26137269 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
26137173 CCAAAACATG
* *
26137183 TGTCACATATATCACGAACTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCACGAACTCAGACCACAACACAAGGAGTTCGGA
*
26137228 TGTCACATATATCATGAACTCAGACCACAACACAAGGAGTTC
1 TGTCACATATATCACGAACTCAGACCACAACACAAGGAGTTC
26137270 AGATTACATA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (45 bp):
TGTCACATATATCACGAACTCAGACCACAACACAAGGAGTTCGGA
Found at i:26141097 original size:39 final size:39
Alignment explanation
Indices: 26141016--26141178 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26141006 TATGGTAACC
* *
26141016 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
26141056 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26141095 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
26141134 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
26141173 CGCACA
1 CGCACA
26141179 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:26148854 original size:39 final size:39
Alignment explanation
Indices: 26148741--26148935 Score: 264
Period size: 39 Copynumber: 4.9 Consensus size: 39
26148731 CTCGTTCAAA
* * *** * *
26148741 TGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
*
26148781 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAAT
* * *
26148821 TGCCTTCGGGCTTAGCCCGGATATCATAGCTCGCACCAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
26148860 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
*
26148899 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
26148936 TTCATACACA
Statistics
Matches: 139, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 42 0.30
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAACTCGCACAAT
Found at i:26150644 original size:46 final size:45
Alignment explanation
Indices: 26150500--26150649 Score: 153
Period size: 46 Copynumber: 3.2 Consensus size: 45
26150490 GGCTATCACA
*
26150500 CAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACT
1 CAACGAGTTC-GGCATTCGCATCCATAAGTGAACTCGGACTCAACT
* * * * *
26150546 CAACGAGTTCGG-ATGC-CTAGTTACATTTCA-CGAACTCAGACTCAACT
1 CAACGAGTTCGGCATTCGC-A--TCCA--TAAGTGAACTCGGACTCAACT
*
26150593 CAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACT
1 CAACGAGTTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACT
26150639 CAACGAGTTCG
1 CAACGAGTTCG
26150650 AATGCTCAAC
Statistics
Matches: 83, Mismatches: 12, Indels: 18
0.73 0.11 0.16
Matches are distributed among these distances:
43 1 0.01
44 4 0.05
45 3 0.04
46 38 0.46
47 30 0.36
48 2 0.02
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
CAACGAGTTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACT
Found at i:26151108 original size:30 final size:30
Alignment explanation
Indices: 26151074--26151133 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26151064 ATTTAATACG
26151074 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * * *
26151104 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26151134 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26158122 original size:91 final size:92
Alignment explanation
Indices: 26158013--26158181 Score: 304
Period size: 91 Copynumber: 1.8 Consensus size: 92
26158003 GCCCCTAAGT
* *
26158013 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTC-GACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26158077 CGAGTTCGGATGCCTAGTTACATTCAC
66 CGAGTTCGGATGCCTAGTTACATTCAC
*
26158104 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26158169 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26158182 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 49 0.66
92 25 0.34
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTCAC
Found at i:26158154 original size:46 final size:46
Alignment explanation
Indices: 26158008--26158178 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
26157998 AACCCGCCCC
* * *
26158008 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
26158054 TAAGTGAACTC-GACTCAACTCAACGAGTTCGG--ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--TCCA
* *
26158099 TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
26158145 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26158179 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
45 31 0.29
46 66 0.62
48 4 0.04
49 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:26158197 original size:46 final size:46
Alignment explanation
Indices: 26158010--26158197 Score: 142
Period size: 46 Copynumber: 4.1 Consensus size: 46
26158000 CCCGCCCCTA
* ** * *
26158010 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC--GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCC-T
*
26158055 AAGTGAACTC-GACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATTC-
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCCT
* * * * *
26158102 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATCCT
26158147 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
26158193 AGTGA
1 AGTGA
26158198 CATGTCACTT
Statistics
Matches: 114, Mismatches: 13, Indels: 30
0.73 0.08 0.19
Matches are distributed among these distances:
44 10 0.09
45 28 0.25
46 67 0.59
48 4 0.04
49 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
Found at i:26158634 original size:30 final size:30
Alignment explanation
Indices: 26158600--26158659 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26158590 ATTTAATACG
26158600 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
26158630 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26158660 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26160019 original size:28 final size:28
Alignment explanation
Indices: 26159946--26160042 Score: 122
Period size: 28 Copynumber: 3.5 Consensus size: 28
26159936 TCGATATTTA
* ** *
26159946 GCACATTAAGTGCCATACCCAATATCTC
1 GCACACTAAGTGCCATATTCAATGTCTC
*
26159974 GCACACTAAGTGTCATATTCAATGTCTC
1 GCACACTAAGTGCCATATTCAATGTCTC
* *
26160002 GCACACTAAGTGCCATATTCAACGTCTT
1 GCACACTAAGTGCCATATTCAATGTCTC
*
26160030 GTACACTAAGTGC
1 GCACACTAAGTGC
26160043 TAAACTTAGT
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 60 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
GCACACTAAGTGCCATATTCAATGTCTC
Found at i:26168517 original size:40 final size:40
Alignment explanation
Indices: 26168471--26168691 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
26168461 ACTCGATTGT
* *
26168471 CTTCGGGA-TATAGCCCGG-TTATAGTAATTCGCACAAATGC
1 CTTCGGGACT-TAACCCGGATT-TAGTAACTCGCACAAATGC
* * *
26168511 CCTCGGGACTTAACCCGGCTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* *
26168551 CTTCGGGAATTAACCTGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
*
26168591 CTTCGGGAATTAACCCGGATTTAGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
* * *
26168631 CTTCGGGACTTAACCCGGATTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGATTTAGTAAC-TCGCACAAATGC
*
26168672 CTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGAT
26168692 ACCATTCAAA
Statistics
Matches: 163, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
40 131 0.80
41 32 0.20
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGC
Found at i:26169530 original size:2 final size:2
Alignment explanation
Indices: 26169523--26169558 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
26169513 ATGTGCAAAC
26169523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26169559 GTTCAAGAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26174940 original size:282 final size:282
Alignment explanation
Indices: 26174432--26174995 Score: 1058
Period size: 282 Copynumber: 2.0 Consensus size: 282
26174422 AAGTGGTTGA
*
26174432 TTATAGGGGAAATCGCATAGGAGATCTCGTCAAGGAATATCGCAAATCAGGTGTGTACCGAACAC
1 TTATAGGGGAAATCGCATAGGAGATCTCGTCAAGGAATATCACAAATCAGGTGTGTACCGAACAC
*
26174497 CCTTTCTTAGTTCAATTCGGTAAAAGCCGAAATGCCAAAATTTCGGCATTTCATGGTCATGTGAG
66 CCTTTCTTAGTTCAATTCGGCAAAAGCCGAAATGCCAAAATTTCGGCATTTCATGGTCATGTGAG
26174562 TATGCGAATGCTCTCAAGGCATAGAGTAATTGTTAGATCTGGCACCGCAAGGTGGTAAGCACGTT
131 TATGCGAATGCTCTCAAGGCATAGAGTAATTGTTAGATCTGGCACCGCAAGGTGGTAAGCACGTT
* *
26174627 CGCGTGACGTTTTGGCGTATTTCGGAAAAAGGGGCTCGATGGGCCAAAACTGGGCCCAATGGGCT
196 CGCGTGACATTTTGGCGTATTTCGAAAAAAGGGGCTCGATGGGCCAAAACTGGGCCCAATGGGCT
*
26174692 TATGGACCAATATGGGTAAGAG
261 TACGGACCAATATGGGTAAGAG
26174714 TTATAGGGGAAATCGCATAGGAGATCTCGTCAAGGAATATCACAAATCAGGTGTGTACCGAACAC
1 TTATAGGGGAAATCGCATAGGAGATCTCGTCAAGGAATATCACAAATCAGGTGTGTACCGAACAC
*
26174779 CCTTTCTTAGTTCAATTCGGCAAAAGCCGAAATGCCGAAA-TTCTGGCATTTCATGGTCATGTGA
66 CCTTTCTTAGTTCAATTCGGCAAAAGCCGAAATGCCAAAATTTC-GGCATTTCATGGTCATGTGA
26174843 GTATGCGAATGCTCTCAAGGCATAGAGTAATTGTTAGATCTGGCACCGCAAGGTGGTAAGCACGT
130 GTATGCGAATGCTCTCAAGGCATAGAGTAATTGTTAGATCTGGCACCGCAAGGTGGTAAGCACGT
26174908 TCGCGTGACATTTTGGCGTATTTCGAAAAAAGGGGCTCGATGGGCCAAAACTGGGCCCAATGGGC
195 TCGCGTGACATTTTGGCGTATTTCGAAAAAAGGGGCTCGATGGGCCAAAACTGGGCCCAATGGGC
26174973 TTACGGACCAATATGGGTAAGAG
260 TTACGGACCAATATGGGTAAGAG
26174996 ATGGGCAAAT
Statistics
Matches: 275, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
281 3 0.01
282 272 0.99
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (282 bp):
TTATAGGGGAAATCGCATAGGAGATCTCGTCAAGGAATATCACAAATCAGGTGTGTACCGAACAC
CCTTTCTTAGTTCAATTCGGCAAAAGCCGAAATGCCAAAATTTCGGCATTTCATGGTCATGTGAG
TATGCGAATGCTCTCAAGGCATAGAGTAATTGTTAGATCTGGCACCGCAAGGTGGTAAGCACGTT
CGCGTGACATTTTGGCGTATTTCGAAAAAAGGGGCTCGATGGGCCAAAACTGGGCCCAATGGGCT
TACGGACCAATATGGGTAAGAG
Found at i:26177574 original size:19 final size:19
Alignment explanation
Indices: 26177550--26177586 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
26177540 TATCATCAAT
26177550 TCATTTCATAC-ATCATATA
1 TCATTT-ATACAATCATATA
26177569 TCATTTATACAATCATAT
1 TCATTTATACAATCATAT
26177587 TGTACTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.43
Consensus pattern (19 bp):
TCATTTATACAATCATATA
Found at i:26179484 original size:43 final size:43
Alignment explanation
Indices: 26179320--26179475 Score: 249
Period size: 43 Copynumber: 3.6 Consensus size: 43
26179310 AACATTTTGT
*
26179320 GGCGCTTTTCCCACAAACGCCGCTAAAGGTCATGACCTTTAGC
1 GGCGCTTATCCCACAAACGCCGCTAAAGGTCATGACCTTTAGC
* *
26179363 GGCGCTTATCCCACAAACGCCACTAAAGGTCATGACCGTTAGC
1 GGCGCTTATCCCACAAACGCCGCTAAAGGTCATGACCTTTAGC
* *
26179406 AGCGCTTATCCCACAAACGCCGCTAAAGGTCATGACTTTTAGC
1 GGCGCTTATCCCACAAACGCCGCTAAAGGTCATGACCTTTAGC
* *
26179449 GGCGCTTTTCCTACAAACGCCGCTAAA
1 GGCGCTTATCCCACAAACGCCGCTAAA
26179476 AATGATGACC
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 103 1.00
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (43 bp):
GGCGCTTATCCCACAAACGCCGCTAAAGGTCATGACCTTTAGC
Found at i:26187013 original size:29 final size:29
Alignment explanation
Indices: 26186980--26187053 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
26186970 CCTTCGAGCT
* *
26186980 CGCACACCCAGTGCCGTATTTTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
* *
26187009 TGCACACCTAGTGCCATATATTTCCAGCA
1 CGCACACCCAGTGCCATATATTTCCAGCA
**
26187038 CGCACACTTAGTGCCA
1 CGCACACCCAGTGCCA
26187054 ATCTCATCAC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.24
Consensus pattern (29 bp):
CGCACACCCAGTGCCATATATTTCCAGCA
Found at i:26188906 original size:26 final size:26
Alignment explanation
Indices: 26188883--26188949 Score: 64
Period size: 26 Copynumber: 2.5 Consensus size: 26
26188873 ATGTTAAAAA
26188883 TTATTAGTTAAATAATTTTATAAAATAT
1 TTATTA-TT-AATAATTTTATAAAATAT
* * *
26188911 TTATTATTACTATTTTTATAAATTAGT
1 TTATTATTAATAATTTTATAAAATA-T
*
26188938 TT-TTATAAATAA
1 TTATTATTAATAA
26188950 AAAATTAAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
26 21 0.66
27 5 0.16
28 6 0.19
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (26 bp):
TTATTATTAATAATTTTATAAAATAT
Found at i:26189643 original size:7 final size:7
Alignment explanation
Indices: 26189633--26189693 Score: 52
Period size: 7 Copynumber: 8.7 Consensus size: 7
26189623 ATAAAACAAA
26189633 AACCCTT
1 AACCCTT
*
26189640 AACCCCT
1 AACCCTT
* * *
26189647 AAACATA
1 AACCCTT
26189654 AACCCTT
1 AACCCTT
26189661 AACCCTT
1 AACCCTT
*
26189668 AACCCCT
1 AACCCTT
*
26189675 AAACCTT
1 AACCCTT
26189682 AAACCC-T
1 -AACCCTT
26189689 AACCC
1 AACCC
26189694 CCTAAAACTT
Statistics
Matches: 41, Mismatches: 12, Indels: 3
0.73 0.21 0.05
Matches are distributed among these distances:
6 5 0.12
7 32 0.78
8 4 0.10
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.20
Consensus pattern (7 bp):
AACCCTT
Found at i:26189650 original size:21 final size:21
Alignment explanation
Indices: 26189626--26189665 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26189616 TTAAACAATA
26189626 AAACAAAAACCCTTAACCCCT
1 AAACAAAAACCCTTAACCCCT
*
26189647 AAACATAAACCCTTAACCC
1 AAACAAAAACCCTTAACCC
26189666 TTAACCCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.47, C:0.38, G:0.00, T:0.15
Consensus pattern (21 bp):
AAACAAAAACCCTTAACCCCT
Found at i:26189654 original size:28 final size:29
Alignment explanation
Indices: 26189617--26189678 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
26189607 CCCTAAACCT
26189617 TAAACAATAAAACAAAAACCCTTAACCCC
1 TAAACAATAAAACAAAAACCCTTAACCCC
* ***
26189646 TAAAC-ATAAACCCTTAACCCTTAACCCC
1 TAAACAATAAAACAAAAACCCTTAACCCC
26189674 TAAAC
1 TAAAC
26189679 CTTAAACCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 24 0.83
29 5 0.17
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (29 bp):
TAAACAATAAAACAAAAACCCTTAACCCC
Found at i:26189686 original size:22 final size:23
Alignment explanation
Indices: 26189652--26189710 Score: 79
Period size: 22 Copynumber: 2.7 Consensus size: 23
26189642 CCCCTAAACA
26189652 TAAACCCTT-AACCCTTAA-CCCC
1 TAAA-CCTTAAACCCTTAACCCCC
26189674 TAAACCTTAAACCC-TAACCCCC
1 TAAACCTTAAACCCTTAACCCCC
*
26189696 TAAAACTTAAACCCT
1 TAAACCTTAAACCCT
26189711 AACTTTTAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
21 7 0.21
22 26 0.79
ACGTcount: A:0.37, C:0.41, G:0.00, T:0.22
Consensus pattern (23 bp):
TAAACCTTAAACCCTTAACCCCC
Found at i:26189691 original size:28 final size:28
Alignment explanation
Indices: 26189633--26189693 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
26189623 ATAAAACAAA
26189633 AACCCTTAACCCCTAAACATAAACCCTT
1 AACCCTTAACCCCTAAACATAAACCCTT
*
26189661 AACCCTTAACCCCTAAACCTTAAACCC-T
1 AACCCTTAACCCCTAAA-CATAAACCCTT
26189689 AACCC
1 AACCC
26189694 CCTAAAACTT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 23 0.74
29 8 0.26
ACGTcount: A:0.38, C:0.43, G:0.00, T:0.20
Consensus pattern (28 bp):
AACCCTTAACCCCTAAACATAAACCCTT
Found at i:26189711 original size:22 final size:22
Alignment explanation
Indices: 26189661--26189713 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
26189651 ATAAACCCTT
*
26189661 AACCCTTAA-CCCCTAAACCTTA
1 AACCC-TAACCCCCTAAAACTTA
26189683 AACCCTAACCCCCTAAAACTTA
1 AACCCTAACCCCCTAAAACTTA
26189705 AACCCTAAC
1 AACCCTAAC
26189714 TTTTAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (22 bp):
AACCCTAACCCCCTAAAACTTA
Found at i:26189872 original size:49 final size:49
Alignment explanation
Indices: 26189815--26189912 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
26189805 TATCGTAAAC
*
26189815 CCTAAAATATAATGATAATTAATTCTATATTTTAAAATTAATACTATCT
1 CCTAAAATATAATGATAATTAATTCAATATTTTAAAATTAATACTATCT
26189864 CCTAAAATATAATGATAATTAATTCAATATTTTAAAATTAATACTATCT
1 CCTAAAATATAATGATAATTAATTCAATATTTTAAAATTAATACTATCT
26189913 TATTTACAAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (49 bp):
CCTAAAATATAATGATAATTAATTCAATATTTTAAAATTAATACTATCT
Found at i:26190092 original size:40 final size:41
Alignment explanation
Indices: 26190038--26190136 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 41
26190028 GGCGTTTTAA
*
26190038 AAAAAAACGCCGCTAAAGATCG-AGC-ATTAGCGGCGTTT-TT
1 AAAAAAGCGCCGCTAAAGAT-GTA-CTATTAGCGGCGTTTCTT
* * *
26190078 TAAAAAGCGCCGCTAAAGGTGTACTTTTAGCGGCGTTTCTT
1 AAAAAAGCGCCGCTAAAGATGTACTATTAGCGGCGTTTCTT
*
26190119 AAAAAAGCGCCACTAAAG
1 AAAAAAGCGCCGCTAAAG
26190137 CCACTAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.04
40 30 0.60
41 18 0.36
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (41 bp):
AAAAAAGCGCCGCTAAAGATGTACTATTAGCGGCGTTTCTT
Found at i:26190495 original size:39 final size:39
Alignment explanation
Indices: 26190418--26190524 Score: 133
Period size: 39 Copynumber: 2.7 Consensus size: 39
26190408 TTTACATATT
*
26190418 GCGGCGTTTTTAAAAAAGCGCCGCTAATACTCAATCTTTA
1 GCGGCGTTTTTCAAAAA-CGCCGCTAATACTCAATCTTTA
* **
26190458 GCGGCGTTTTTCAAAAACGCCGCTAATGCTCGTTCTTTA
1 GCGGCGTTTTTCAAAAACGCCGCTAATACTCAATCTTTA
* *
26190497 GTGGCGTTTTTCATTCAAACGCCGCTAA
1 GCGGCGTTTTTCA--AAAACGCCGCTAA
26190525 AAACCTGTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
39 31 0.53
40 16 0.27
41 12 0.20
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (39 bp):
GCGGCGTTTTTCAAAAACGCCGCTAATACTCAATCTTTA
Found at i:26198473 original size:27 final size:26
Alignment explanation
Indices: 26198421--26198473 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
26198411 TAATTTAAAA
* **
26198421 TTTAATTTTATACTTATTTTTCTGTT
1 TTTAATTTTATACTTATTCTAATGTT
26198447 TTTAATTTTATACTTTATTCTAATGTT
1 TTTAATTTTATAC-TTATTCTAATGTT
26198474 ATGAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.23, C:0.08, G:0.04, T:0.66
Consensus pattern (26 bp):
TTTAATTTTATACTTATTCTAATGTT
Found at i:26200321 original size:24 final size:24
Alignment explanation
Indices: 26200286--26200333 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
26200276 AAGACTCAAG
*
26200286 AGACACACTGCTTCTGTTCCACAT
1 AGACACACTGCTCCTGTTCCACAT
*
26200310 AGACACATTGCTCCTGTTCCACAT
1 AGACACACTGCTCCTGTTCCACAT
26200334 CTACGGATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.25, C:0.33, G:0.12, T:0.29
Consensus pattern (24 bp):
AGACACACTGCTCCTGTTCCACAT
Found at i:26200622 original size:77 final size:77
Alignment explanation
Indices: 26200495--26200649 Score: 292
Period size: 77 Copynumber: 2.0 Consensus size: 77
26200485 AGAGTGCATT
26200495 CATGTGTGTTATGGCATGAGATCAAATTTCTCAAAATGTATCTTTGGGTGACAAAACCTGATTGA
1 CATGTGTGTTATGGCATGAGATCAAATTTCTCAAAATGTATCTTTGGGTGACAAAACCTGATTGA
*
26200560 GACCTGTGATGG
66 GACATGTGATGG
*
26200572 CATGTGTGTTATGGCCTGAGATCAAATTTCTCAAAATGTATCTTTGGGTGACAAAACCTGATTGA
1 CATGTGTGTTATGGCATGAGATCAAATTTCTCAAAATGTATCTTTGGGTGACAAAACCTGATTGA
26200637 GACATGTGATGG
66 GACATGTGATGG
26200649 C
1 C
26200650 CCAAATAGAA
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 76 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (77 bp):
CATGTGTGTTATGGCATGAGATCAAATTTCTCAAAATGTATCTTTGGGTGACAAAACCTGATTGA
GACATGTGATGG
Found at i:26207550 original size:16 final size:16
Alignment explanation
Indices: 26207529--26207576 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
26207519 TCTTCAAACG
26207529 AAGAAAGAATACGCCT
1 AAGAAAGAATACGCCT
*
26207545 AAGAAAGAGTACGCCT
1 AAGAAAGAATACGCCT
*
26207561 AAGGAAA-ACTACGCCT
1 AA-GAAAGAATACGCCT
26207577 TTAAGTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 25 0.86
17 4 0.14
ACGTcount: A:0.46, C:0.21, G:0.21, T:0.12
Consensus pattern (16 bp):
AAGAAAGAATACGCCT
Found at i:26208529 original size:15 final size:15
Alignment explanation
Indices: 26208509--26208539 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26208499 TTGTTATGGG
26208509 TATGAGTGAAATCTA
1 TATGAGTGAAATCTA
26208524 TATGAGTGAAATCTA
1 TATGAGTGAAATCTA
26208539 T
1 T
26208540 GTAAATGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.35
Consensus pattern (15 bp):
TATGAGTGAAATCTA
Found at i:26213343 original size:28 final size:28
Alignment explanation
Indices: 26213312--26213397 Score: 91
Period size: 28 Copynumber: 3.1 Consensus size: 28
26213302 TTTTCAGAGA
*
26213312 TCACCACAGAGGTTGTTATTTTCATACT
1 TCACCACAGAGGTTGTTCTTTTCATACT
* * * *
26213340 TCACTATAGATGTTGTTCTTTTCACACT
1 TCACCACAGAGGTTGTTCTTTTCATACT
* * * *
26213368 TCGCCACAAAGGCTATTCTTTTCATACT
1 TCACCACAGAGGTTGTTCTTTTCATACT
26213396 TC
1 TC
26213398 GTTACAAAGG
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.23, C:0.24, G:0.12, T:0.41
Consensus pattern (28 bp):
TCACCACAGAGGTTGTTCTTTTCATACT
Found at i:26213398 original size:28 final size:27
Alignment explanation
Indices: 26213355--26213434 Score: 90
Period size: 28 Copynumber: 2.9 Consensus size: 27
26213345 ATAGATGTTG
*
26213355 TTCTTTTCACACTTCGCCACAAAGGCTA
1 TTCTTTTCATACTTCGCCACAAAGGC-A
**
26213383 TTCTTTTCATACTTCGTTACAAAGGCA
1 TTCTTTTCATACTTCGCCACAAAGGCA
* *
26213410 TTCATTTCATGA-TTCACCACAAAGG
1 TTCTTTTCAT-ACTTCGCCACAAAGG
26213435 ATTTCATTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 20 0.45
28 24 0.55
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (27 bp):
TTCTTTTCATACTTCGCCACAAAGGCA
Found at i:26218513 original size:26 final size:25
Alignment explanation
Indices: 26218484--26218535 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
26218474 ACTTTTGTTA
26218484 AGGGACT-TTTGATGAAAATGTGAAAT
1 AGGGACTATTTG-TG-AAATGTGAAAT
26218510 AGGGACTAATTTGTGAAATGTGAAAT
1 AGGGACT-ATTTGTGAAATGTGAAAT
26218536 TTATGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 18 0.75
27 2 0.08
28 4 0.17
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (25 bp):
AGGGACTATTTGTGAAATGTGAAAT
Found at i:26219147 original size:42 final size:42
Alignment explanation
Indices: 26219032--26219149 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
26219022 GAACTACCGA
* * * *
26219032 GATTTCGTATAAGACCCTATCTA-GAATATGGCATCGGTATAT
1 GATTTCATATAAGACCATATC-AGGGATATGGCATCGATATAT
* * *
26219074 GATTTCATATAAGACCATGTTAGGGACATGGCATCGATATGAT
1 GATTTCATATAAGACCATATCAGGGATATGGCATCGATAT-AT
* * *
26219117 -ATTTCATGTAAGGCCATATCCGGGATATGGCAT
1 GATTTCATATAAGACCATATCAGGGATATGGCAT
26219150 TAACACGGTA
Statistics
Matches: 61, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.02
42 58 0.95
43 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (42 bp):
GATTTCATATAAGACCATATCAGGGATATGGCATCGATATAT
Found at i:26222556 original size:85 final size:85
Alignment explanation
Indices: 26222396--26222558 Score: 188
Period size: 85 Copynumber: 1.9 Consensus size: 85
26222386 GTCTGAGACA
* * * * * *
26222396 TCGTGTAAGACCGTGTCTAGGACATAGGCCTCGATTGAGATTTATGTATACGACCATATCTGGGA
1 TCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATTGAGATTCATGTATACGACCACATCTGAGA
*
26222461 CATCGGCATTGTATTTGATT
66 CATCGACATTGTATTTGATT
*
26222481 TCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATATTGA-ATTACATGTA-A-GACCACGTCTG
1 TCGTGTAAGACCCTGTCTAGGACAGAGGCATCG--ATTGAGATT-CATGTATACGACCACATCTG
* *
26222543 ATACGTCGACATTGTA
63 AGACATCGACATTGTA
26222559 CTTGTTTATG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
85 51 0.78
86 4 0.06
87 10 0.15
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACCCTGTCTAGGACAGAGGCATCGATTGAGATTCATGTATACGACCACATCTGAGA
CATCGACATTGTATTTGATT
Found at i:26223334 original size:26 final size:26
Alignment explanation
Indices: 26223298--26223350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26223288 ATCACACAGC
26223298 CGTGGCACACGGGCGTGTCTGTTGGT
1 CGTGGCACACGGGCGTGTCTGTTGGT
*
26223324 CGTGGCACACGGGCTTGTCTGTTGGT
1 CGTGGCACACGGGCGTGTCTGTTGGT
26223350 C
1 C
26223351 ATGGGAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.08, C:0.25, G:0.40, T:0.28
Consensus pattern (26 bp):
CGTGGCACACGGGCGTGTCTGTTGGT
Found at i:26230527 original size:12 final size:12
Alignment explanation
Indices: 26230512--26230542 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26230502 GCCATATCGC
26230512 AGGCCATGTACT
1 AGGCCATGTACT
*
26230524 AGGCCGTGTACT
1 AGGCCATGTACT
26230536 AGGCCAT
1 AGGCCAT
26230543 TCTGACTTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.23
Consensus pattern (12 bp):
AGGCCATGTACT
Found at i:26232139 original size:26 final size:26
Alignment explanation
Indices: 26232110--26232217 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26232100 TGGTACAAAT
26232110 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26232136 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26232162 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26232188 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26232214 TGAT
1 TGAT
26232218 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26233679 original size:28 final size:27
Alignment explanation
Indices: 26233647--26233707 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
26233637 AAGAATAGTT
26233647 AAATTACTTG-AATACCCCTATGTATGGA
1 AAATTACTTGTAATACCCCTA-G-ATGGA
* *
26233675 AAATTA-TTGTTATACCCCTAGATGTA
1 AAATTACTTGTAATACCCCTAGATGGA
26233701 AAATTAC
1 AAATTAC
26233708 CATTATACCC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
26 10 0.34
27 4 0.14
28 15 0.52
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.34
Consensus pattern (27 bp):
AAATTACTTGTAATACCCCTAGATGGA
Found at i:26233868 original size:27 final size:26
Alignment explanation
Indices: 26233826--26233966 Score: 147
Period size: 27 Copynumber: 5.2 Consensus size: 26
26233816 AGGAAGCGTC
*
26233826 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* * *
26233853 CTGGTGGCTTTTCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
26233880 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* * * *
26233907 CTGGTGGCTCTACTACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
* *
26233934 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACATTATCTG-AT
26233961 CTGGTG
1 CTGGTG
26233967 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
26 10 0.11
27 83 0.87
28 2 0.02
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:26233908 original size:54 final size:53
Alignment explanation
Indices: 26233826--26233966 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 53
26233816 AGGAAGCGTC
* * *
26233826 CTGGTGGCTATGCCACAATTATTTGATCTGGTGGCTTTTCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
*
26233880 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTACTACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* *
26233934 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
26233967 ACTTCGTCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 7 0.09
54 72 0.91
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.38
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:26233977 original size:27 final size:26
Alignment explanation
Indices: 26233826--26233984 Score: 113
Period size: 27 Copynumber: 5.9 Consensus size: 26
26233816 AGGAAGCGTC
* * * *
26233826 CTGGTGGCTATGCCACAATTATTTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* * *
26233853 CTGGTGGCTTTTCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
* * * *
26233880 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGACTCTGCCAC-AATATCTGTT
* * *
26233907 CTGGTGGCTCTACTACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
26233934 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
26233961 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
26233985 GCAGCCTCGC
Statistics
Matches: 110, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
26 10 0.09
27 98 0.89
28 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:26236990 original size:10 final size:10
Alignment explanation
Indices: 26236977--26237010 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26236967 TTACTTCTAT
26236977 TTATCTTTAA
1 TTATCTTTAA
26236987 TTATCTTTAA
1 TTATCTTTAA
* *
26236997 TTGTCTTTAT
1 TTATCTTTAA
26237007 TTAT
1 TTAT
26237011 TTGTGTTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.65
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:26246539 original size:6 final size:6
Alignment explanation
Indices: 26246538--26246602 Score: 130
Period size: 6 Copynumber: 10.8 Consensus size: 6
26246528 TCTTTTTATT
26246538 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
26246586 TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTT
26246603 ATTATTTATT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:26248400 original size:10 final size:10
Alignment explanation
Indices: 26248385--26248434 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
26248375 TAAATTTAAG
26248385 ATTTAT-TTCT
1 ATTTATCTT-T
26248395 ATTTATCTTT
1 ATTTATCTTT
*
26248405 AATTATCTTT
1 ATTTATCTTT
26248415 ATTTAT-TTGT
1 ATTTATCTT-T
26248425 ATTTATCTTT
1 ATTTATCTTT
26248435 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 29 0.83
11 4 0.11
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:26250893 original size:26 final size:26
Alignment explanation
Indices: 26250837--26250900 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
26250827 TACATCAATG
* *
26250837 CTCACACGAGCTGTGAAATGGGTCTG
1 CTCACACGAGCTGTGAAATGGGCCTA
* *
26250863 TTCACACGAGCTGTGGAATGGGCCTA
1 CTCACACGAGCTGTGAAATGGGCCTA
*
26250889 CTCACATGAGCT
1 CTCACACGAGCT
26250901 ACGGGTCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (26 bp):
CTCACACGAGCTGTGAAATGGGCCTA
Found at i:26254999 original size:52 final size:49
Alignment explanation
Indices: 26254816--26255008 Score: 191
Period size: 47 Copynumber: 4.0 Consensus size: 49
26254806 TGCACATAGT
* * ** * *
26254816 CACATATCACA-TACCAAGGCCATAGCCCAGCCATGGTCTTACACGG-AT
1 CACATATCACACT-CCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* * *
26254864 CACATATCACACT--GATGCCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
26254911 CACATATCACA--CCGATGCCATATCCCGGATATGGTCTTATACGGAAG
1 CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
* *
26254958 CACATATCACATTTCTCCGAAGCCATAGCCCAGCTATGGTCTTATACGGAA
1 CACATATCACA---CTCCGATGCCATAGCCCAGATATGGTCTTATACGGAA
26255009 ATCACATTTC
Statistics
Matches: 121, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
46 24 0.20
47 54 0.45
48 11 0.09
49 1 0.01
52 31 0.26
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
CACATATCACACTCCGATGCCATAGCCCAGATATGGTCTTATACGGAAG
Found at i:26261092 original size:15 final size:14
Alignment explanation
Indices: 26261048--26261118 Score: 56
Period size: 15 Copynumber: 4.8 Consensus size: 14
26261038 TTTGAGGGCC
26261048 ATATTATTTTTTAA-
1 ATATTA-TTTTTAAT
26261062 ATATT-TTTTTAAAAT
1 ATATTATTTTT--AAT
26261077 ATATTATTTATTAAT
1 ATATTATTT-TTAAT
*
26261092 ATAATATATTTTAAT
1 ATATTAT-TTTTAAT
*
26261107 TTATTACTTTTT
1 ATATTA-TTTTT
26261119 TGGTGAATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
12 5 0.11
14 7 0.15
15 27 0.57
16 6 0.13
17 2 0.04
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.62
Consensus pattern (14 bp):
ATATTATTTTTAAT
Found at i:26263625 original size:14 final size:14
Alignment explanation
Indices: 26263604--26263672 Score: 75
Period size: 14 Copynumber: 4.9 Consensus size: 14
26263594 CTTACCTAAT
26263604 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTGA
* **
26263618 TTTGCAAGTTGCAA
1 TGTGCAAGTTGTGA
*
26263632 TGTGTAAGTTGTGA
1 TGTGCAAGTTGTGA
* * *
26263646 TTTGCAAGTCGTAA
1 TGTGCAAGTTGTGA
26263660 TGTGCAAGTTGTG
1 TGTGCAAGTTGTG
26263673 CAAGTTGCAA
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 41 1.00
ACGTcount: A:0.23, C:0.09, G:0.30, T:0.38
Consensus pattern (14 bp):
TGTGCAAGTTGTGA
Found at i:26263644 original size:28 final size:28
Alignment explanation
Indices: 26263604--26263672 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
26263594 CTTACCTAAT
*
26263604 TGTGCAAGTTGTGATTTGCAAGTTGCAA
1 TGTGCAAGTTGTGATTTGCAAGTCGCAA
* *
26263632 TGTGTAAGTTGTGATTTGCAAGTCGTAA
1 TGTGCAAGTTGTGATTTGCAAGTCGCAA
26263660 TGTGCAAGTTGTG
1 TGTGCAAGTTGTG
26263673 CAAGTTGCAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.09, G:0.30, T:0.38
Consensus pattern (28 bp):
TGTGCAAGTTGTGATTTGCAAGTCGCAA
Found at i:26268429 original size:50 final size:50
Alignment explanation
Indices: 26268311--26268704 Score: 364
Period size: 50 Copynumber: 7.8 Consensus size: 50
26268301 ATTGTGAGAA
* * * *
26268311 CACATATGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--T-A-CCAGATTGTTAGGT
* * *
26268363 CTCGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * * * * *
26268413 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC-GATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TTAGGT
* *
26268463 CACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * ** * * *
26268513 CGCATGTGCAGTACTAAGTGCAGGCTACTATGCATACTC-GATAGCTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATTG-TTAGGT
* * * *
26268564 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
26268614 CACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
26268664 CGCATATGTAGAACTAAGTGTAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
26268705 GAACTTCAGT
Statistics
Matches: 277, Mismatches: 58, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
48 3 0.01
49 7 0.03
50 197 0.71
51 42 0.15
52 28 0.10
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:26268496 original size:100 final size:101
Alignment explanation
Indices: 26268365--26268643 Score: 443
Period size: 101 Copynumber: 2.8 Consensus size: 101
26268355 TTTTAGGTCT
* *
26268365 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTTGCATGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAA
*
26268430 GTGCAGGCTACTATGCGTAC-CGATAGCTTCGATCA
66 GTGCAGGCTACTATGCATACTCGATAGCTTCGATCA
* *
26268465 CGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGCAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAA
*
26268530 GTGCAGGCTACTATGCATACTCGATAGCTTTGATCA
66 GTGCAGGCTACTATGCATACTCGATAGCTTCGATCA
* * * * *
26268566 CGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAA
1 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAA
*
26268631 GTGTAGGCTACTA
66 GTGCAGGCTACTA
26268644 CATGTACCAG
Statistics
Matches: 164, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
100 80 0.49
101 84 0.51
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (101 bp):
CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAA
GTGCAGGCTACTATGCATACTCGATAGCTTCGATCA
Found at i:26268617 original size:151 final size:151
Alignment explanation
Indices: 26268417--26268696 Score: 418
Period size: 151 Copynumber: 1.9 Consensus size: 151
26268407 TTAGGTTGCA
* * * *
26268417 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGATAGCTTCGATCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTACAGATAGCTTAGATCACGTGTGTAGTACTAAGT
* * *
26268482 ACAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGCAGTACTAAGTGCAGGCTACTATGCA
66 ACAGGCTACTACATGTACCAGATTGTTAGGTCGCATATGCAGAACTAAGTGCAGGCTACTATGCA
26268547 TACTCGATAGCTTTGATCACG
131 TACTCGATAGCTTTGATCACG
* * *
26268568 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAGAT-GGTTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAAGCTACTACGCGTA-CAGATAGCTTAGATCACGTGTGTAGTACTAAG
** * *
26268632 TGTAGGCTACTACATGTACCAGATTGTTAGGTCGCATATGTAGAACTAAGTGTAGGCTACTATGC
65 TACAGGCTACTACATGTACCAGATTGTTAGGTCGCATATGCAGAACTAAGTGCAGGCTACTATGC
26268697 GTACCAGAGA
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
151 110 0.96
152 4 0.04
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TGTGTAGTACTAAGTGCAAGCTACTACGCGTACAGATAGCTTAGATCACGTGTGTAGTACTAAGT
ACAGGCTACTACATGTACCAGATTGTTAGGTCGCATATGCAGAACTAAGTGCAGGCTACTATGCA
TACTCGATAGCTTTGATCACG
Found at i:26271960 original size:14 final size:14
Alignment explanation
Indices: 26271939--26271979 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
26271929 CTTACCTAAT
26271939 TGTGCAAGTTGTGA
1 TGTGCAAGTTGTGA
* **
26271953 TTTGCAAGTTGCAA
1 TGTGCAAGTTGTGA
26271967 TGTGCAAGTTGTG
1 TGTGCAAGTTGTG
26271980 CAAGTTGCAA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.22, C:0.10, G:0.32, T:0.37
Consensus pattern (14 bp):
TGTGCAAGTTGTGA
Found at i:26282204 original size:25 final size:25
Alignment explanation
Indices: 26282170--26282219 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
26282160 TAATACAAGC
*
26282170 TTACATACCAAATTTGACTCTCTCT
1 TTACATACCAAATTTGACGCTCTCT
26282195 TTACATACCAAATTTGACGCTCTCT
1 TTACATACCAAATTTGACGCTCTCT
26282220 CTCTCTCTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.38
Consensus pattern (25 bp):
TTACATACCAAATTTGACGCTCTCT
Found at i:26289769 original size:11 final size:11
Alignment explanation
Indices: 26289737--26289770 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
26289727 TGCTTCTCTG
*
26289737 TTTCTATTCTA
1 TTTCTATTCTT
*
26289748 TTTCTTTTCTT
1 TTTCTATTCTT
26289759 TTTCTATTCTT
1 TTTCTATTCTT
26289770 T
1 T
26289771 ATTTGTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTCTATTCTT
Found at i:26295138 original size:27 final size:27
Alignment explanation
Indices: 26295080--26295207 Score: 100
Period size: 27 Copynumber: 4.7 Consensus size: 27
26295070 CCTCACGATC
* *
26295080 TTCCACCAAAAGATAGTCCT-AGCAGACC
1 TTCCA-CAAAAGATAGTCATGA-CAGACT
* *
26295108 TTCCATATAAA-ATAGTCATGACTGACT
1 TTCCACA-AAAGATAGTCATGACAGACT
*
26295135 TTCCACAAAAGATAGTCTTGACAGACT
1 TTCCACAAAAGATAGTCATGACAGACT
* * *
26295162 TTCTACCAAAGATAGTCCTGAC-GAACT
1 TTCCACAAAAGATAGTCATGACAG-ACT
* **
26295189 TCCCACATTAGATAGTCAT
1 TTCCACAAAAGATAGTCAT
26295208 TGTGGACTTC
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
26 4 0.05
27 67 0.84
28 9 0.11
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (27 bp):
TTCCACAAAAGATAGTCATGACAGACT
Found at i:26295216 original size:27 final size:26
Alignment explanation
Indices: 26295186--26295257 Score: 81
Period size: 26 Copynumber: 2.7 Consensus size: 26
26295176 GTCCTGACGA
* **
26295186 ACTTCCCACATTAGATAGTCATTGTGG
1 ACTTCCCGCATTAGATAGTC-TTGCAG
* *
26295213 ACTTCCTGCATAAGATAGTCTTGCAG
1 ACTTCCCGCATTAGATAGTCTTGCAG
*
26295239 ACTTCCCGCATTACATAGT
1 ACTTCCCGCATTAGATAGT
26295258 TATTACAAAC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
26 20 0.54
27 17 0.46
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (26 bp):
ACTTCCCGCATTAGATAGTCTTGCAG
Found at i:26295249 original size:26 final size:26
Alignment explanation
Indices: 26295143--26295249 Score: 76
Period size: 27 Copynumber: 4.0 Consensus size: 26
26295133 CTTTCCACAA
*
26295143 AAGATAGTCTTGACAGACTTTCTAC-CA-
1 AAGATAGTCTTG-CAGAC-TTC-CCGCAT
* *
26295170 AAGATAGTCCTG-ACGAACTTCCCACAT
1 AAGATAGTCTTGCA-G-ACTTCCCGCAT
* ** *
26295197 TAGATAGTCATTGTGGACTTCCTGCAT
1 AAGATAGTC-TTGCAGACTTCCCGCAT
26295224 AAGATAGTCTTGCAGACTTCCCGCAT
1 AAGATAGTCTTGCAGACTTCCCGCAT
26295250 TACATAGTTA
Statistics
Matches: 63, Mismatches: 11, Indels: 13
0.72 0.13 0.15
Matches are distributed among these distances:
25 2 0.03
26 20 0.32
27 38 0.60
28 3 0.05
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
AAGATAGTCTTGCAGACTTCCCGCAT
Found at i:26295256 original size:26 final size:27
Alignment explanation
Indices: 26295186--26295277 Score: 87
Period size: 27 Copynumber: 3.4 Consensus size: 27
26295176 GTCCTGACGA
* **
26295186 ACTTCCCACATTAGATAGTCATTGTGG
1 ACTTCCCGCATTAGATAGTCATTGCAG
* *
26295213 ACTTCCTGCATAAGATAGTC-TTGCAG
1 ACTTCCCGCATTAGATAGTCATTGCAG
* * * *
26295239 ACTTCCCGCATTACATAGTTATTACAA
1 ACTTCCCGCATTAGATAGTCATTGCAG
*
26295266 ACTTCCCACATT
1 ACTTCCCGCATT
26295278 TACGGTAATG
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 20 0.38
27 32 0.62
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (27 bp):
ACTTCCCGCATTAGATAGTCATTGCAG
Found at i:26296855 original size:97 final size:99
Alignment explanation
Indices: 26296727--26296922 Score: 342
Period size: 98 Copynumber: 2.0 Consensus size: 99
26296717 AAAAAGTATA
* *
26296727 AATAAATTATACTAAAAAAATCAAAACATATTGTATTAAAAAAATTAAAAAT-AAAGAATAAGAA
1 AATAAATTATACTAAAAAAATCAAAACATATTGTATTAAAAAAATTAAAAATAAAAAAAGAAGAA
*
26296791 AAATGTATCAAATGATTCGAAAAGAAATGAACAC
66 AAATGTATCAAATGATTCAAAAAGAAATGAACAC
*
26296825 AATAAGTTATACT-AAAAAATCAAAACATATTGTATTAAAAAAATTAAAAATAAAAAAAGAAGAA
1 AATAAATTATACTAAAAAAATCAAAACATATTGTATTAAAAAAATTAAAAATAAAAAAAGAAGAA
26296889 AAATGTATCAAATGATTCAAAAAGAAATGAACAC
66 AAATGTATCAAATGATTCAAAAAGAAATGAACAC
26296923 GAAATAGATT
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 38 0.41
98 55 0.59
ACGTcount: A:0.62, C:0.07, G:0.08, T:0.23
Consensus pattern (99 bp):
AATAAATTATACTAAAAAAATCAAAACATATTGTATTAAAAAAATTAAAAATAAAAAAAGAAGAA
AAATGTATCAAATGATTCAAAAAGAAATGAACAC
Found at i:26297237 original size:60 final size:60
Alignment explanation
Indices: 26297144--26297274 Score: 165
Period size: 60 Copynumber: 2.2 Consensus size: 60
26297134 TCCTTTTTGA
** *
26297144 AATTTTT-GAAATTTGAACTAATTTGAGAAATTTTGTAAATGTTGAGAGCTAAATTTATTG
1 AATTTTTAG-AATTTGAACTAAAATGAGAAATTTTGTAAATATTGAGAGCTAAATTTATTG
* * * * *
26297204 AATTTTTAGAATTTGGACTAAAATGATAAATTTTGTAAATATTGAGGGTTAAATTTGTTG
1 AATTTTTAGAATTTGAACTAAAATGAGAAATTTTGTAAATATTGAGAGCTAAATTTATTG
26297264 AACTTTTTAGA
1 AA-TTTTTAGA
26297275 TTTAACATCA
Statistics
Matches: 61, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
60 52 0.85
61 9 0.15
ACGTcount: A:0.37, C:0.03, G:0.17, T:0.44
Consensus pattern (60 bp):
AATTTTTAGAATTTGAACTAAAATGAGAAATTTTGTAAATATTGAGAGCTAAATTTATTG
Done.