Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 88 of 433
Found at i:26298541 original size:24 final size:24
Alignment explanation
Indices: 26298470--26298542 Score: 69
Period size: 30 Copynumber: 2.9 Consensus size: 24
26298460 TTTTTAGTAA
26298470 TATTTTTAAAT-TA-AATTATAAT
1 TATTTTTAAATGTATAATTATAAT
*
26298492 TATTTTTAAATGTGGAATTATCATTATAGT
1 TATTTTTAAATGT---A-TA--ATTATAAT
26298522 TATTTTTAAATGTATAATTAT
1 TATTTTTAAATGTATAATTAT
26298543 TACAAATTCT
Statistics
Matches: 42, Mismatches: 1, Indels: 14
0.74 0.02 0.25
Matches are distributed among these distances:
22 11 0.26
23 1 0.02
24 5 0.12
26 3 0.07
27 1 0.02
28 1 0.02
30 20 0.48
ACGTcount: A:0.38, C:0.01, G:0.07, T:0.53
Consensus pattern (24 bp):
TATTTTTAAATGTATAATTATAAT
Found at i:26298541 original size:30 final size:30
Alignment explanation
Indices: 26298484--26298542 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
26298474 TTTAAATTAA
*
26298484 ATTATAATTATTTTTAAATGTGGAATTATC
1 ATTATAATTATTTTTAAATGTAGAATTATC
* *
26298514 ATTATAGTTATTTTTAAATGTATAATTAT
1 ATTATAATTATTTTTAAATGTAGAATTAT
26298543 TACAAATTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (30 bp):
ATTATAATTATTTTTAAATGTAGAATTATC
Found at i:26300606 original size:29 final size:27
Alignment explanation
Indices: 26300572--26300630 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 27
26300562 ATATTTAATA
*
26300572 TATATTATTTTTTATTTAAAAATTATTAT
1 TATATTATTTTTTA-ATAAAAATTA-TAT
*
26300601 TATATTATTTTTTAATAAATATTATAT
1 TATATTATTTTTTAATAAAAATTATAT
26300628 TAT
1 TAT
26300631 TATTTTCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 6 0.21
28 8 0.29
29 14 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TATATTATTTTTTAATAAAAATTATAT
Found at i:26300623 original size:25 final size:24
Alignment explanation
Indices: 26300568--26300636 Score: 72
Period size: 25 Copynumber: 2.8 Consensus size: 24
26300558 CCGAATATTT
26300568 AATATATATTAT-TT-TTTATTTAAA
1 AATAT-TATTATATTATTT-TTTAAA
26300592 AATTATTATTATATTATTTTTTAATA
1 AA-TATTATTATATTATTTTTTAA-A
26300618 AATATTA-TATTATTATTTT
1 AATATTATTA-TATTATTTT
26300637 CATTATTATG
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
24 10 0.25
25 24 0.60
26 6 0.15
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
AATATTATTATATTATTTTTTAAA
Found at i:26301232 original size:22 final size:21
Alignment explanation
Indices: 26301196--26301236 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
26301186 AAAATTGTTT
26301196 TAATGTTGCACGTAATTTTCA
1 TAATGTTGCACGTAATTTTCA
*
26301217 TAATAGTTGCATGTAATTTT
1 TAAT-GTTGCACGTAATTTT
26301237 TTATTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (21 bp):
TAATGTTGCACGTAATTTTCA
Found at i:26303925 original size:43 final size:43
Alignment explanation
Indices: 26303789--26303939 Score: 132
Period size: 43 Copynumber: 3.5 Consensus size: 43
26303779 CATAAACTCG
* * *
26303789 TACAATGCC-ATATCCCAGACATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAA
* * * * * *
26303830 TATCGATGCCACTATCACGGACAGGGTCTTACACG-AA-ATCAA
1 TA-CAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAA
*
26303872 TTA-ATGATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCAA
1 -TACA--ATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAA
*
26303917 TACAATGCCAATGTCCCAGACAT
1 TACAATGCCAATATCCCAGACAT
26303940 AGTGTTACTT
Statistics
Matches: 85, Mismatches: 16, Indels: 16
0.73 0.14 0.14
Matches are distributed among these distances:
41 3 0.04
42 8 0.09
43 65 0.76
44 4 0.05
45 5 0.06
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
TACAATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAA
Found at i:26308099 original size:24 final size:24
Alignment explanation
Indices: 26308071--26308124 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
26308061 ATATATTAGA
*
26308071 ATATTTAATATTTGTTAGTATAAT
1 ATATTTAACATTTGTTAGTATAAT
* *
26308095 ATATTTAGCATTTTTTAGTATAAT
1 ATATTTAACATTTGTTAGTATAAT
*
26308119 TTATTT
1 ATATTT
26308125 GACCTACGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.57
Consensus pattern (24 bp):
ATATTTAACATTTGTTAGTATAAT
Found at i:26309381 original size:19 final size:19
Alignment explanation
Indices: 26309330--26309400 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
26309320 AAATTACAAA
* * *
26309330 AAAAATCAAAGTAATTTTC
1 AAAATTCAAAATAATTTTT
*
26309349 AAAATTTGAAAATAATTTTT
1 AAAA-TTCAAAATAATTTTT
*
26309369 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
26309387 AGAAATTCTAAAAT
1 A-AAATTC-AAAAT
26309401 TTATATTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 6 0.14
19 17 0.40
20 20 0.47
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:26309402 original size:18 final size:19
Alignment explanation
Indices: 26309357--26309405 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
26309347 TCAAAATTTG
*
26309357 AAAATAATTTTTA-AAATTC
1 AAAAT-ATTTATAGAAATTC
26309376 AAAATATTTATAGAAATTC
1 AAAATATTTATAGAAATTC
*
26309395 TAAA-ATTTATA
1 AAAATATTTATA
26309406 TTTAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (19 bp):
AAAATATTTATAGAAATTC
Found at i:26309783 original size:21 final size:21
Alignment explanation
Indices: 26309759--26309798 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26309749 ACCTTTTCTA
*
26309759 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
26309780 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
26309799 CATTGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.12, G:0.12, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:26313694 original size:17 final size:17
Alignment explanation
Indices: 26313672--26313724 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 17
26313662 TCAAACAATA
26313672 ATAAAAATTATAAAAAT
1 ATAAAAATTATAAAAAT
*
26313689 ATAAAAATTATTAAGAATT
1 ATAAAAATTA-TAA-AAAT
26313708 ATAAGAAATTATAAAAA
1 ATAA-AAATTATAAAAA
26313725 GATTATTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 10 0.32
18 5 0.16
19 10 0.32
20 6 0.19
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (17 bp):
ATAAAAATTATAAAAAT
Found at i:26313701 original size:20 final size:20
Alignment explanation
Indices: 26313678--26313724 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
26313668 AATAATAAAA
26313678 ATTATAAAAATATAA-AAATT
1 ATTA-AAAAATATAAGAAATT
* *
26313698 ATTAAGAATTATAAGAAATT
1 ATTAAAAAATATAAGAAATT
26313718 A-TAAAAA
1 ATTAAAAA
26313725 GATTATTGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (20 bp):
ATTAAAAAATATAAGAAATT
Found at i:26313720 original size:10 final size:9
Alignment explanation
Indices: 26313672--26313724 Score: 72
Period size: 10 Copynumber: 5.8 Consensus size: 9
26313662 TCAAACAATA
26313672 ATAAAAATT
1 ATAAAAATT
26313681 ATAAAAA-T
1 ATAAAAATT
26313689 ATAAAAATT
1 ATAAAAATT
*
26313698 ATTAAGAATT
1 A-TAAAAATT
26313708 ATAAGAAATT
1 ATAA-AAATT
26313718 ATAAAAA
1 ATAAAAA
26313725 GATTATTGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
8 8 0.21
9 15 0.38
10 16 0.41
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (9 bp):
ATAAAAATT
Found at i:26314094 original size:10 final size:10
Alignment explanation
Indices: 26314079--26314145 Score: 59
Period size: 10 Copynumber: 6.6 Consensus size: 10
26314069 TCTGGACATT
26314079 ATTTTTAATA
1 ATTTTTAATA
26314089 ATTTTTAGATA
1 ATTTTTA-ATA
*
26314100 A-GTTTAATA
1 ATTTTTAATA
26314109 ATTTATT-ATAA
1 ATTT-TTAAT-A
*
26314120 ATTTTAAATA
1 ATTTTTAATA
26314130 ATTCTTT-ATA
1 ATT-TTTAATA
26314140 ATTTTT
1 ATTTTT
26314146 TTTAAAAAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
9 7 0.15
10 25 0.53
11 15 0.32
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:26314131 original size:21 final size:19
Alignment explanation
Indices: 26314081--26314144 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 19
26314071 TGGACATTAT
*
26314081 TTTTAATAATTTTTAGATAA
1 TTTTAATAATTTTTATA-AA
*
26314101 GTTTAATAATTTATTATAAA
1 TTTTAATAATTT-TTATAAA
26314121 TTTTAAATAATTCTTTAT-AA
1 TTTT-AATAATT-TTTATAAA
26314141 TTTT
1 TTTT
26314145 TTTTAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
20 22 0.58
21 15 0.39
22 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTTAATAATTTTTATAAA
Found at i:26314145 original size:21 final size:21
Alignment explanation
Indices: 26314079--26314145 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
26314069 TCTGGACATT
* *
26314079 ATTTTTAATAATTT-TTAGATA
1 ATTTTAAATAATTTATTATA-A
*
26314100 AGTTT-AATAATTTATTATAA
1 ATTTTAAATAATTTATTATAA
26314120 ATTTTAAATAATTCT-TTATAA
1 ATTTTAAATAATT-TATTATAA
*
26314141 TTTTT
1 ATTTT
26314146 TTTAAAAAAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
20 13 0.33
21 25 0.64
22 1 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (21 bp):
ATTTTAAATAATTTATTATAA
Found at i:26314256 original size:17 final size:18
Alignment explanation
Indices: 26314234--26314281 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
26314224 TATTAAGGAA
*
26314234 TTTTATTTTTT-TAGATT
1 TTTTATTTTTTAAAGATT
*
26314251 TTTTATTTCTTTAAATATT
1 TTTTATTT-TTTAAAGATT
26314270 TTTTATTTTTTA
1 TTTTATTTTTTA
26314282 TTAGATGGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 8 0.30
18 7 0.26
19 12 0.44
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTATTTTTTAAAGATT
Found at i:26316202 original size:12 final size:12
Alignment explanation
Indices: 26316185--26316228 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
26316175 AGGAATAACC
26316185 AAATAAAAAATT
1 AAATAAAAAATT
*
26316197 AAATAAAAAAAT
1 AAATAAAAAATT
*
26316209 AACAAAAAATAATT
1 AA-ATAAAA-AATT
26316223 AAATAA
1 AAATAA
26316229 GGTTAATAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 13 0.50
13 8 0.31
14 5 0.19
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.20
Consensus pattern (12 bp):
AAATAAAAAATT
Found at i:26324471 original size:29 final size:29
Alignment explanation
Indices: 26324439--26324683 Score: 173
Period size: 29 Copynumber: 8.4 Consensus size: 29
26324429 GGTTGTAACT
* **
26324439 ATCCTTTTTCATATTCGATGGTCAAAACC
1 ATCCCTTTTCATATTCGATGGTCATCACC
* * *
26324468 ATCCCTTTTCATTAATCGACGGCCATCACC
1 ATCCCTTTTCA-TATTCGATGGTCATCACC
*
26324498 ATCCCTTTTCATAGTT-GATGGTCGTCACC
1 ATCCCTTTTCATA-TTCGATGGTCATCACC
* * * *
26324527 ATCCCTTTTCATAATT-AATAG-C-TGAAGCT
1 ATCCCTTTTCAT-ATTCGATGGTCAT-CA-CC
* **
26324556 ATCCCTTTTCATATTCGATAGTTGTCACC
1 ATCCCTTTTCATATTCGATGGTCATCACC
26324585 ATCCCTTTTCATAGTT-GATGGTCATCACC
1 ATCCCTTTTCATA-TTCGATGGTCATCACC
* * * * *
26324614 TTCCCATTTCATAATT-AATAGTCGA--AGCT
1 ATCCCTTTTCAT-ATTCGATGGTC-ATCA-CC
*
26324643 ATCCCTTTTCATATTCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCATCACC
26324672 ATCCCTTTTCAT
1 ATCCCTTTTCAT
26324684 TGGTCGATGA
Statistics
Matches: 169, Mismatches: 32, Indels: 30
0.73 0.14 0.13
Matches are distributed among these distances:
27 1 0.01
28 9 0.05
29 126 0.75
30 32 0.19
31 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.11, T:0.38
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATGGTCATCACC
Found at i:26324605 original size:87 final size:87
Alignment explanation
Indices: 26324493--26324683 Score: 321
Period size: 87 Copynumber: 2.2 Consensus size: 87
26324483 TCGACGGCCA
* *
26324493 TCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAATTAATAG-CTGAAGCTA
1 TCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCATTTCATAATTAATAGTC-GAAGCTA
*
26324557 TCCCTTTTCATATTCGATAGTTG
65 TCCCTTTTCATATTCGATAGTCG
*
26324580 TCACCATCCCTTTTCATAGTTGATGGTCATCACCTTCCCATTTCATAATTAATAGTCGAAGCTAT
1 TCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCATTTCATAATTAATAGTCGAAGCTAT
*
26324645 CCCTTTTCATATTCGATGGTCG
66 CCCTTTTCATATTCGATAGTCG
26324667 TCACCATCCCTTTTCAT
1 TCACCATCCCTTTTCAT
26324684 TGGTCGATGA
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
87 97 0.99
88 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.39
Consensus pattern (87 bp):
TCACCATCCCTTTTCATAGTTGATGGTCATCACCATCCCATTTCATAATTAATAGTCGAAGCTAT
CCCTTTTCATATTCGATAGTCG
Found at i:26324624 original size:58 final size:57
Alignment explanation
Indices: 26324465--26324683 Score: 194
Period size: 58 Copynumber: 3.8 Consensus size: 57
26324455 GATGGTCAAA
* * * *
26324465 ACCATCCCTTTTCATTAATCGACGGCCATCACCATCCCTTTTCATAGTTGATGGTCGTC
1 ACCATCCCTTTTCA-TAATTGATGGTCATCACCATCCCTTTTCATA-TTGATAGTCGTC
* * * * *
26324524 ACCATCCCTTTTCATAATTAATAG-C-TGAAGCTATCCCTTTTCATATTCGATAGTTGTC
1 ACCATCCCTTTTCATAATTGATGGTCAT-CA-CCATCCCTTTTCATATT-GATAGTCGTC
* * * * *
26324582 ACCATCCCTTTTCATAGTTGATGGTCATCACCTTCCCATTTCATAATTAATAGTCG-A
1 ACCATCCCTTTTCATAATTGATGGTCATCACCATCCCTTTTCAT-ATTGATAGTCGTC
* *
26324639 AGCTATCCCTTTTCAT-ATTCGATGGTCGTCACCATCCCTTTTCAT
1 A-CCATCCCTTTTCATAATT-GATGGTCATCACCATCCCTTTTCAT
26324684 TGGTCGATGA
Statistics
Matches: 129, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
56 1 0.01
57 7 0.05
58 101 0.78
59 19 0.15
60 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.11, T:0.37
Consensus pattern (57 bp):
ACCATCCCTTTTCATAATTGATGGTCATCACCATCCCTTTTCATATTGATAGTCGTC
Found at i:26324758 original size:2 final size:2
Alignment explanation
Indices: 26324751--26324788 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
26324741 GTATAATAAC
26324751 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26324789 TGATTCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26329082 original size:40 final size:40
Alignment explanation
Indices: 26329012--26329105 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
26329002 CTATTTGTGG
** *
26329012 CACTTAGTGTGCGATTCGGCATAGTTTCGGCTATATATGA
1 CACTTAGTGTGCGATTCGGCATAGCGTCGGCTATATACGA
* * *
26329052 CACTTAGTGTGCGATTTGAG-ATAGCGTCGGCTATGTACGG
1 CACTTAGTGTGCGATTCG-GCATAGCGTCGGCTATATACGA
*
26329092 CACTTAGTTTGCGA
1 CACTTAGTGTGCGA
26329106 GATATCAAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 45 0.98
41 1 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (40 bp):
CACTTAGTGTGCGATTCGGCATAGCGTCGGCTATATACGA
Found at i:26329132 original size:28 final size:28
Alignment explanation
Indices: 26329090--26329162 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
26329080 GGCTATGTAC
* *
26329090 GGCACTTAGTTTGCGAGATATCAAGTGT
1 GGCACTTAGTGTGCGAGATATCAAGTAT
* **
26329118 GGCACTTAGTGTGCGAAATATTGAGTAT
1 GGCACTTAGTGTGCGAGATATCAAGTAT
*
26329146 GGCACTAAGTGTGCGAG
1 GGCACTTAGTGTGCGAG
26329163 GCATTGAGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.29
Consensus pattern (28 bp):
GGCACTTAGTGTGCGAGATATCAAGTAT
Found at i:26329168 original size:28 final size:28
Alignment explanation
Indices: 26329117--26329173 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
26329107 ATATCAAGTG
* *
26329117 TGGCACTTAGTGTGCGAAATATTGAGTA
1 TGGCACTAAGTGTGCGAAACATTGAGTA
**
26329145 TGGCACTAAGTGTGCGAGGCATTGAGTA
1 TGGCACTAAGTGTGCGAAACATTGAGTA
26329173 T
1 T
26329174 TCAACGACAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.30
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAAACATTGAGTA
Found at i:26330766 original size:29 final size:29
Alignment explanation
Indices: 26330727--26330805 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
26330717 CTTAATAATC
* *
26330727 AACCACGCACACCTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26330757 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26330786 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26330806 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 37 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.34, G:0.15, T:0.23
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26342237 original size:46 final size:44
Alignment explanation
Indices: 26342097--26342237 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 44
26342087 GCCCATAAGC
* *
26342097 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
26342144 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
26342190 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
26342236 GA
1 GA
26342238 CATGTCACTT
Statistics
Matches: 78, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 33 0.42
47 30 0.38
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:26342672 original size:30 final size:30
Alignment explanation
Indices: 26342638--26342697 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26342628 ATTTAATACG
26342638 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
26342668 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
26342698 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:26346050 original size:24 final size:24
Alignment explanation
Indices: 26346023--26346071 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
26346013 ACTGAGCTGT
*
26346023 AAGGTTATGACTAATTTGAGGGCA
1 AAGGTTATGAATAATTTGAGGGCA
26346047 AAGGTTATGAATAATTTGAGGGCA
1 AAGGTTATGAATAATTTGAGGGCA
26346071 A
1 A
26346072 TGTTTGCTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.29, T:0.29
Consensus pattern (24 bp):
AAGGTTATGAATAATTTGAGGGCA
Found at i:26348491 original size:12 final size:12
Alignment explanation
Indices: 26348474--26348505 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26348464 GCCACACGGG
26348474 CATGTGGTCGCC
1 CATGTGGTCGCC
26348486 CATGTGGTCGCC
1 CATGTGGTCGCC
26348498 CATGTGGT
1 CATGTGGT
26348506 AGGCCGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.28, G:0.34, T:0.28
Consensus pattern (12 bp):
CATGTGGTCGCC
Found at i:26351161 original size:71 final size:71
Alignment explanation
Indices: 26351077--26351240 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26351067 CGATTTGTCT
26351077 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26351142 CTTTCA
66 CTTTCA
26351148 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26351213 CTTTCA
66 CTTTCA
26351219 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26351241 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26351278 original size:71 final size:70
Alignment explanation
Indices: 26351077--26351274 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
26351067 CGATTTGTCT
* * * *
26351077 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26351142 CTTTCA
65 CTTTCA
* * * *
26351148 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26351213 CTTTCA
65 CTTTCA
* *
26351219 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
26351275 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26358728 original size:71 final size:71
Alignment explanation
Indices: 26358644--26358807 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26358634 CGATTTGTCT
26358644 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26358709 CTTTCA
66 CTTTCA
26358715 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26358780 CTTTCA
66 CTTTCA
26358786 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26358808 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26358845 original size:71 final size:70
Alignment explanation
Indices: 26358644--26358841 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
26358634 CGATTTGTCT
* * * *
26358644 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26358709 CTTTCA
65 CTTTCA
* * * *
26358715 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26358780 CTTTCA
65 CTTTCA
* *
26358786 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
26358842 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26367890 original size:40 final size:39
Alignment explanation
Indices: 26367764--26367908 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
26367754 TGCTGGAAAT
* * * * *
26367764 TATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * * *
26367803 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 -TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTC-G
* *
26367844 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
* * *
26367883 TGATATCCGGGTTAAGTCCCGTAGGC
1 T-ATATCCGGGCTAAGACCCGAAGGC
26367909 CTTGGTGCGG
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.99
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTCG
Found at i:26367933 original size:80 final size:81
Alignment explanation
Indices: 26367765--26367953 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
26367755 GCTGGAAATT
* * * *
26367765 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
26367830 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
26367846 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
26367909 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
26367925 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
26367954 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:26383955 original size:17 final size:18
Alignment explanation
Indices: 26383929--26383962 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26383919 TTTTTGTTTA
26383929 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
26383946 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
26383963 ATATTAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:26384161 original size:16 final size:16
Alignment explanation
Indices: 26384142--26384183 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
26384132 GCAAACCCCT
26384142 AGCCTAGCAACCATTC
1 AGCCTAGCAACCATTC
26384158 AGCCTAGCAACCATTC
1 AGCCTAGCAACCATTC
* *
26384174 GGCCAAGCAA
1 AGCCTAGCAA
26384184 ACATCCAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.33, C:0.36, G:0.17, T:0.14
Consensus pattern (16 bp):
AGCCTAGCAACCATTC
Found at i:26393720 original size:40 final size:40
Alignment explanation
Indices: 26393655--26393770 Score: 135
Period size: 40 Copynumber: 2.9 Consensus size: 40
26393645 ATTATGTTTG
* *
26393655 GCACTTAGTGTGCGTATCGAGATAGCTTCGGCTATATAAA
1 GCACTTAGTGTGCGAATCGAGATAGCTTCAGCTATATAAA
* * **
26393695 GCACTTAGTGTGCGAATCG-GAATAGCTTTAGTTATATATG
1 GCACTTAGTGTGCGAATCGAG-ATAGCTTCAGCTATATAAA
* *
26393735 GCACTTAGTGTGTGAGATTGAGATAGCTTCAGCTAT
1 GCACTTAGTGTGCGA-ATCGAGATAGCTTCAGCTAT
26393771 GTTTTGGCAC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.02
40 46 0.73
41 15 0.24
42 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (40 bp):
GCACTTAGTGTGCGAATCGAGATAGCTTCAGCTATATAAA
Found at i:26396141 original size:51 final size:50
Alignment explanation
Indices: 26396011--26396196 Score: 204
Period size: 50 Copynumber: 3.7 Consensus size: 50
26396001 ATTGTGAATA
*
26396011 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-AT-ACTGTTA-AGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAATGAC--TTAGA-T
* * * *
26396061 CGCCTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAATGACTTAGAT
*
26396112 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG--TTAG-T
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCA-A-TGACTTAGAT
* *
26396161 CACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTA
26396197 TCAGATAGCT
Statistics
Matches: 117, Mismatches: 13, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
49 34 0.29
50 38 0.32
51 38 0.32
52 5 0.04
53 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAATGACTTAGAT
Found at i:26396188 original size:49 final size:47
Alignment explanation
Indices: 26396015--26396190 Score: 217
Period size: 51 Copynumber: 3.6 Consensus size: 47
26396005 TGAATACACG
* *
26396015 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCC
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-A-TGTT-AGTCACA
* * * *
26396065 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAATGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAATG--TTAG-TCACA
26396116 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-A-TGTTAGTCACA
26396165 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26396191 TGCGTATCAG
Statistics
Matches: 111, Mismatches: 9, Indels: 13
0.83 0.07 0.10
Matches are distributed among these distances:
49 32 0.29
50 38 0.34
51 39 0.35
52 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (47 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAATGTTAGTCACA
Found at i:26396202 original size:49 final size:49
Alignment explanation
Indices: 26396015--26396202 Score: 218
Period size: 49 Copynumber: 3.8 Consensus size: 49
26396005 TGAATACACG
* * * * *
26396015 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCC
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGTT-AGTCACA
* * *
26396065 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-A-TGACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTAC-CAGATTG--TTAG-TCACA
*
26396116 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGTTAGTCACA
* *
26396165 TGTGTAGTACTAAGTGCAGGCTACTATGCGTATCAGAT
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGAT
26396203 AGCTTCGGCT
Statistics
Matches: 120, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
49 41 0.34
50 38 0.32
51 39 0.32
52 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATTGTTAGTCACA
Found at i:26396320 original size:27 final size:26
Alignment explanation
Indices: 26396290--26396341 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
26396280 GGGAAAATCA
26396290 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
26396317 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
26396342 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:26399495 original size:40 final size:40
Alignment explanation
Indices: 26399441--26399594 Score: 139
Period size: 40 Copynumber: 3.9 Consensus size: 40
26399431 CCGCACCAAG
* * * * * *
26399441 GCCTACGGGACTTAACCCGAATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATATAACAACTTGCACAAAT
* *
26399481 GCCTTCGGGTCTTAACCCGGATTTAACAACTTGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATATAACAACTTGCACAAAT
* ** * *
26399521 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAACCCGGATATAACAACTTGCACAAAT
* * * *
26399561 GTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAACCCGGATATAACAACTTGC
26399595 TCATGCACAC
Statistics
Matches: 92, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 90 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAACCCGGATATAACAACTTGCACAAAT
Found at i:26407602 original size:40 final size:40
Alignment explanation
Indices: 26407503--26407701 Score: 148
Period size: 40 Copynumber: 5.0 Consensus size: 40
26407493 GCTACTCGTT
* * * *** **
26407503 CAAATGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAACAACTTGCA
* * * * * *
26407543 CCAAGGCCTACGGGACTTAACCCGGATATCACGATTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAACAACTTGCA
* *
26407583 CAAATGCCTTCGGGTCTTAACCCGGATTTAACAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAACAACTTGCA
* * * ** *
26407623 CGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATATAACAACTTGCA
* * * *
26407663 TAAATGTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 CAAATG-CCTTCGGGACTTAACCCGGATATAACAACTTGC
26407702 TCATGCACAC
Statistics
Matches: 123, Mismatches: 35, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
40 121 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAACAACTTGCA
Found at i:26410772 original size:68 final size:67
Alignment explanation
Indices: 26410700--26410849 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
26410690 CATCATGTGT
* * * *
26410700 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
26410762 ATGTAG
62 ATGTAG
** * *
26410768 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
26410833 AG
66 AG
26410835 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
26410850 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:26410805 original size:64 final size:64
Alignment explanation
Indices: 26410724--26410907 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
26410714 AGACATTATG
* *
26410724 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
26410788 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26410853 AA
63 AA
* * * *
26410855 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
26410908 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26411990 original size:2 final size:2
Alignment explanation
Indices: 26411983--26412015 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26411973 TCATGACATG
26411983 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26412016 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26418046 original size:28 final size:27
Alignment explanation
Indices: 26418014--26418097 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
26418004 TGACTTCGAT
26418014 CACGTGTGTAGTACTAAGTGCAGGCTA
1 CACGTGTGTAGTACTAAGTGCAGGCTA
* *
26418041 CTACGTGTATCAG-A-T-GGTG-AGG-T-
1 C-ACGTGTGT-AGTACTAAGTGCAGGCTA
26418064 CACGTGTGTAGTACTAAGTGCAGGCTA
1 CACGTGTGTAGTACTAAGTGCAGGCTA
26418091 CCACGTG
1 -CACGTG
26418098 CACCAGATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 17
0.68 0.06 0.26
Matches are distributed among these distances:
21 2 0.05
22 8 0.18
23 2 0.05
24 4 0.09
25 6 0.14
26 4 0.09
27 2 0.05
28 14 0.32
29 2 0.05
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (27 bp):
CACGTGTGTAGTACTAAGTGCAGGCTA
Found at i:26418088 original size:50 final size:49
Alignment explanation
Indices: 26417963--26418154 Score: 215
Period size: 50 Copynumber: 3.9 Consensus size: 49
26417953 ATTGTGAATA
* * * * *
26417963 CACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCA-ATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATG--GTAGGT
26418014 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGT-AGGT
* * * * *
26418064 CACGTGTGTAGTACTAAGTGCAGGCTACCACGTGCACCAGATTGTTGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTAGGT
* * * *
26418113 CGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT
26418155 AGCTTCGGCT
Statistics
Matches: 122, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
49 39 0.32
50 46 0.38
51 37 0.30
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (49 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTAGGT
Found at i:26418272 original size:27 final size:26
Alignment explanation
Indices: 26418242--26418293 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
26418232 GGGAAAATCG
26418242 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGTGG--ATATGTGCAAAGTTATT
* *
26418269 ATAAGGTGGATATGTGCAAATTTAT
1 ATAAAGTGGATATGTGCAAAGTTAT
26418294 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 7 0.32
26 7 0.32
27 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.37
Consensus pattern (26 bp):
ATAAAGTGGATATGTGCAAAGTTATT
Found at i:26421119 original size:68 final size:66
Alignment explanation
Indices: 26421047--26421217 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
26421037 CATCATGTGT
* * * *
26421047 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
26421110 TGTAG
62 TGTAG
** * *
26421115 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
26421180 AG
65 AG
* * *
26421182 ACAAGAGAGCTACGAGATAAATG--GCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
26421218 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
64 24 0.27
65 15 0.17
66 4 0.04
67 33 0.37
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:26421152 original size:64 final size:64
Alignment explanation
Indices: 26421071--26421253 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
26421061 AGACATTATG
* * *
26421071 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
26421135 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
26421200 AA
63 AA
* *
26421202 ATG--GCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
26421254 CGAACTATAT
Statistics
Matches: 99, Mismatches: 15, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
61 1 0.01
62 19 0.19
63 1 0.01
64 24 0.24
65 18 0.18
66 3 0.03
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26438684 original size:62 final size:62
Alignment explanation
Indices: 26438609--26438750 Score: 257
Period size: 62 Copynumber: 2.3 Consensus size: 62
26438599 TGACAATCTA
*
26438609 TTCGGGAGGTAGAGTTTACCACCCGGATGTTTTTCCCGAAGAATTACCGGGTTTACCACTTG
1 TTCGGGAGGTAGAGTTTACCACCCGGATGTTTTTCCCGAAGAATTACCGGGTTTACCACCTG
* *
26438671 TTCGGGAGGTAGAGTTTACCACCCTGATGTTTTTCCCGAAGAATTACTGGGTTTACCACCTG
1 TTCGGGAGGTAGAGTTTACCACCCGGATGTTTTTCCCGAAGAATTACCGGGTTTACCACCTG
26438733 TTCGGGAGGTAGAGTTTA
1 TTCGGGAGGTAGAGTTTA
26438751 GTATTGAGCT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 77 1.00
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (62 bp):
TTCGGGAGGTAGAGTTTACCACCCGGATGTTTTTCCCGAAGAATTACCGGGTTTACCACCTG
Found at i:26443356 original size:40 final size:40
Alignment explanation
Indices: 26443299--26443489 Score: 240
Period size: 40 Copynumber: 4.8 Consensus size: 40
26443289 CGGATGATAA
* * * *
26443299 CCGGGCTAAGTCTCGAAGGCAGTTGTGCGCGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
*
26443339 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * * * *
26443379 CTGGGCTGAGTCCCAAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* * *
26443419 CCGGGCTAAGTCCTGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
* *
26443459 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26443490 AGTTATATCC
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
39 8 0.06
40 124 0.94
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
Found at i:26446613 original size:40 final size:39
Alignment explanation
Indices: 26446569--26446761 Score: 260
Period size: 39 Copynumber: 4.9 Consensus size: 39
26446559 GTTCAAAACA
* * ** * *
26446569 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
26446609 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
26446649 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
26446688 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
26446727 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
26446762 TTCATTCTCA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:26452618 original size:1 final size:1
Alignment explanation
Indices: 26452612--26452641 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
26452602 ACTGGTATAC
26452612 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
26452642 GGAACTTGGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:26454739 original size:40 final size:39
Alignment explanation
Indices: 26454695--26454887 Score: 260
Period size: 39 Copynumber: 4.9 Consensus size: 39
26454685 GTTCAAAACA
* * ** * *
26454695 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
26454735 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
26454775 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
26454814 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
26454853 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
26454888 TTCATTCTCA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:26467134 original size:18 final size:18
Alignment explanation
Indices: 26467111--26467152 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
26467101 ATCGCGAGGG
26467111 CGATGAAATAGGAAAGGT
1 CGATGAAATAGGAAAGGT
26467129 CGATGAAATAGGAAAGGT
1 CGATGAAATAGGAAAGGT
26467147 CGATGA
1 CGATGA
26467153 CGTGCCCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.33, T:0.17
Consensus pattern (18 bp):
CGATGAAATAGGAAAGGT
Found at i:26481634 original size:47 final size:46
Alignment explanation
Indices: 26481520--26481883 Score: 242
Period size: 47 Copynumber: 7.8 Consensus size: 46
26481510 TGATTTGTGC
* * * *
26481520 GCCAGTGTAAGACATGTCTAGGACATGCTTCTG--TCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATC-CA-GATGAGA
* * *
26481566 GCCAGTGTAAGACCATTTCTGGGACATGGCATCGGCATCCAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCCAGATGAGA
* ** * * *
26481614 GCTAGTGTAAGACATGTCTGGGACATGCATCATCTATAC-TATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ATCCAGATGAGA
* * *
26481660 GCCAGTGTAAGACTATGTCTGGGACATGGCATTGGCA-CAGAGATGAGT
1 GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATC-CAGATGAGA
* * * *
26481708 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTTGACAGA-GATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCAT-CCAGATGAGA
** * * * *
26481755 GCCAGTGTAAGATGTGTCTGGGACACGCATCGGC-T-AAGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGATG-AGA
* * * *
26481799 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCGCA-CGTATATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATC-G-GCATC-CAGATGAGA
*
26481847 GCCAGTGGAAGACCATGTCTGGGACATGGCATCGGCA
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
26481884 ATATATCCCA
Statistics
Matches: 245, Mismatches: 52, Indels: 40
0.73 0.15 0.12
Matches are distributed among these distances:
43 4 0.02
44 26 0.11
45 2 0.01
46 41 0.17
47 87 0.36
48 61 0.25
49 17 0.07
50 7 0.03
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCCAGATGAGA
Found at i:26481684 original size:94 final size:93
Alignment explanation
Indices: 26481523--26481883 Score: 355
Period size: 94 Copynumber: 3.9 Consensus size: 93
26481513 TTTGTGCGCC
* * * * * *
26481523 AGTGTAAGACATGTCTAGGACATGCTTC-TGTCACATTATGAGAGCCAGTGTAAGACCATTTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCATCT-ATACTATGAGAGCCAGTGTAAGACCATGTCTG
* *
26481587 GGACATGGCATCGGCATCCAGACGAGGGCT
65 GGACATGGCATCGGCATCAAGA-GAGTGCT
* *
26481617 AGTGTAAGACATGTCTGGGACATGCATCATCTATACTATGATAGCCAGTGTAAGACTATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCATCTATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* *
26481682 GACATGGCATTGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCA-AGA-GAGTGCT
* **
26481711 AGTGTAAGACATGTCTGGGACATGCATCAGCCT-TGAC-A-GAGATAGCCAGTGTAAGA-TGTGT
1 AGTGTAAGACATGTCTGGGACATGCATCA-TCTAT-ACTATGAG--AGCCAGTGTAAGACCATGT
* *
26481772 CTGGGACA-CGCATCGGC-T-AAGAGTTGTGCT
62 CTGGGACATGGCATCGGCATCAAGAG-AGTGCT
* * * *
26481802 AGTGTAAGACATGTCTGAGACATGCATCAGCGCACGTA-TATGAGAGCCAGTGGAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCATC-TA--TACTATGAGAGCCAGTGTAAGACCATGTC
26481866 TGGGACATGGCATCGGCA
63 TGGGACATGGCATCGGCA
26481884 ATATATCCCA
Statistics
Matches: 223, Mismatches: 27, Indels: 33
0.79 0.10 0.12
Matches are distributed among these distances:
90 2 0.01
91 35 0.16
92 13 0.06
93 23 0.10
94 131 0.59
95 19 0.09
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCATCTATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAAGAGAGTGCT
Found at i:26481773 original size:141 final size:139
Alignment explanation
Indices: 26481520--26481880 Score: 376
Period size: 141 Copynumber: 2.6 Consensus size: 139
26481510 TGATTTGTGC
* * * * *
26481520 GCCAGTGTAAGACATGTCTAGGACATGCTTCTGTCACA-TTATGAGAGCCAGTGTAAGACCATTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCTGGCACAGATATGAGAGCCAGTGTAAGACCATGT
* * * * * *
26481584 CTGGGACATGGCATCGGCATCCAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCATCT
66 CTGGGACATGGCATCGCCATACAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCATCAGCT
*
26481649 -ATACTATGAT
131 AAGACT-TG-T
* *
26481659 AGCCAGTGTAAGACTATGTCTGGGACATGGCAT-TGGCACAGAGATGAGTGCCAGTGTAAGA-CA
1 -GCCAGTGTAAGAC-ATGTCTGGGACAT-GCATCTGGCACAGATATGAGAGCCAGTGTAAGACCA
* * **
26481722 TGTCTGGGACAT-GCATCAGCCTTGACAGA-GATAGCCAGTGTAAGATGTGTCTGGGACACGCAT
63 TGTCTGGGACATGGCATC-GCCAT-ACAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCAT
* *
26481785 CGGCTAAGAGTTGT
126 CAGCTAAGACTTGT
* * * *
26481799 GCTAGTGTAAGACATGTCTGAGACATGCATCAGCGCAC-GTATATGAGAGCCAGTGGAAGACCAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCTG-GCACAG-ATATGAGAGCCAGTGTAAGACCAT
26481863 GTCTGGGACATGGCATCG
64 GTCTGGGACATGGCATCG
26481881 GCAATATATC
Statistics
Matches: 184, Mismatches: 26, Indels: 22
0.79 0.11 0.09
Matches are distributed among these distances:
137 4 0.02
138 14 0.08
139 33 0.18
140 34 0.18
141 72 0.39
142 27 0.15
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCTGGCACAGATATGAGAGCCAGTGTAAGACCATGT
CTGGGACATGGCATCGCCATACAGACGAGAGCCAGTGTAAGACATGTCTGGGACACGCATCAGCT
AAGACTTGT
Found at i:26484716 original size:47 final size:47
Alignment explanation
Indices: 26484565--26484924 Score: 256
Period size: 47 Copynumber: 7.7 Consensus size: 47
26484555 ATATATTACC
* * ** *
26484565 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTGTGAG-GCT
* * * * * *
26484615 GATGCATGTCCCAGACATGTCTAACACTAGC-A-CAACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGTGAGGCT
* * *
26484659 GATGCGTGTCCTAGACACGTCTTACACTGGCTATC-TCTGTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGT-GAGGCT
* * *
26484706 GATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATCTATG-TGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCTGTGAGGCT
* *
26484752 GGTGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT-ATGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTGTGA-GGCT
* * ** * * *
26484800 GATGCATGTCCTAGACATGTCTTACACTAGCCCTCGTCTG-GATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGTGAGGCT
* * * *
26484846 GATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGT--GGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CTGTGAGGCT
* *
26484894 GAAGCATGTCCCAGACATGACTTACACTGGC
1 GATGCATGTCCCAGACATGTCTTACACTGGC
26484925 GCACAAATCA
Statistics
Matches: 244, Mismatches: 49, Indels: 38
0.74 0.15 0.11
Matches are distributed among these distances:
44 28 0.11
45 4 0.02
46 43 0.18
47 90 0.37
48 58 0.24
49 17 0.07
50 4 0.02
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTGTGAGGCT
Found at i:26484816 original size:94 final size:93
Alignment explanation
Indices: 26484563--26484921 Score: 390
Period size: 94 Copynumber: 3.8 Consensus size: 93
26484553 GGATATATTA
* *
26484563 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCTGATGCATGTCCC
* * *
26484627 AGACATGTCTAACACTAGCAC-AACTCTT-AG
63 AGACATGTCTTACACTAGCACTCA-TCTTGTG
* * * *
26484657 CCGATG-CGTGTCCTAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCTGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCTGATGCATGTCCC
*
26484718 AGACATGTCTTACACTGGCACTCATCTATGTG
63 AGACATGTCTTACACTAGCACTCATCT-TGTG
* *
26484750 CCGGTGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGA
* * *
26484815 CATGTCTTACACTAGCCCTCGTCTGGATG
66 CATGTCTTACACTAGCACTCATCTTG-TG
* * * * * *
26484844 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGA
*
26484909 CATGACTTACACT
66 CATGTCTTACACT
26484922 GGCGCACAAA
Statistics
Matches: 225, Mismatches: 28, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
91 38 0.17
92 19 0.08
93 20 0.09
94 127 0.56
95 20 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.27
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGA
CATGTCTTACACTAGCACTCATCTTGTG
Found at i:26484822 original size:141 final size:137
Alignment explanation
Indices: 26484563--26484924 Score: 399
Period size: 141 Copynumber: 2.6 Consensus size: 137
26484553 GGATATATTA
* *
26484563 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TA--TGTGCCGATGCATGTCCCA
* * * * * *
26484628 GACATGTCTAACACTAGCACAACTCTTAGCCGATGCGTGTCCTAGACACGTCTTACACTGGCTAT
63 GACATGTCTTACACTGGCACAACTCATAGCCGATGCATGTCCTAGACACGTCTTACACTAGCCAT
26484693 C-TCTGTCGAGG
128 CGTCTG--GAGG
* * *
26484704 CTGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTATGTGCCGGTGCCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TATGTGCCGATG-CATGTCCCAG
* * * *
26484767 ACATGGTCTTACACTGGCTATCATAGT-ATGGCTGATGCATGTCCTAGACATGTCTTACACTAGC
64 ACAT-GTCTTACACTGGC-A-CA-ACTCATAGCCGATGCATGTCCTAGACACGTCTTACACTAGC
* *
26484831 CCTCGTCTGGATG
125 CATCGTCTGGAGG
* * *
26484844 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTATGT-GCCGATGCATGTCCCAGA
*
26484909 CATGACTTACACTGGC
65 CATGTCTTACACTGGC
26484925 GCACAAATCA
Statistics
Matches: 187, Mismatches: 25, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
137 7 0.04
138 14 0.07
139 31 0.17
140 35 0.19
141 72 0.39
142 28 0.15
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (137 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTATGTGCCGATGCATGTCCCAGAC
ATGTCTTACACTGGCACAACTCATAGCCGATGCATGTCCTAGACACGTCTTACACTAGCCATCGT
CTGGAGG
Found at i:26485297 original size:30 final size:30
Alignment explanation
Indices: 26485263--26485320 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
26485253 AAATTTACAT
* * *
26485263 CTTTGGTAAAATGATCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
26485293 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
26485321 TGCTTGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:26493657 original size:350 final size:353
Alignment explanation
Indices: 26493010--26493716 Score: 1339
Period size: 350 Copynumber: 2.0 Consensus size: 353
26493000 ATTGTTCTTC
*
26493010 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACGAGGTTTGTATTCTTTACTTAACGATT
1 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACAAGGTTTGTATTCTTTACTTAACGATT
26493075 TCTGGTCATTGTGGTCCACCTCACCTTCACCCTTACCTTTACTTACTACTGTTTCTTGCCTCGAT
66 TCTGGTCATTGTGGT---CCTCACCTTCACCCTTACCTTTACTTACTACTGTTTCTTGCCTCGAT
26493140 TCTGGTTCAAGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTAG
128 TCTGGTTCAAGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTAG
26493205 GTTAGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGAC
193 GTTAGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGAC
26493270 CTATCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGA
258 CTATCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGA
26493335 AAATGAGTTTCTGACACTGAGATGAATTTTG
323 AAATGAGTTTCTGACACTGAGATGAATTTTG
26493366 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACAAGGTTTGTATTCTTTACTTAACGATT
1 TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACAAGGTTTGTATTCTTTACTTAACGATT
26493431 TCTGGTCATTGTGGT-C-CACC-TCACCCTTACCTTTACTTACTACTGTTTCTTGCCTCGATTCT
66 TCTGGTCATTGTGGTCCTCACCTTCACCCTTACCTTTACTTACTACTGTTTCTTGCCTCGATTCT
* *
26493493 GGTTCAGGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTGGGTT
131 GGTTCAAGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTAGGTT
26493558 AGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGACCTA
196 AGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGACCTA
26493623 TCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGAAAA
261 TCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGAAAA
26493688 TGAGTTTCTGACACTGAGATGAATTTTG
326 TGAGTTTCTGACACTGAGATGAATTTTG
26493716 T
1 T
26493717 TAGCATCTCC
Statistics
Matches: 348, Mismatches: 3, Indels: 6
0.97 0.01 0.02
Matches are distributed among these distances:
350 264 0.76
351 4 0.01
352 1 0.00
356 79 0.23
ACGTcount: A:0.19, C:0.21, G:0.20, T:0.40
Consensus pattern (353 bp):
TGTGCAGTCTTTCCTTGTCCCATTTGGGTGTGGCACACAAGGTTTGTATTCTTTACTTAACGATT
TCTGGTCATTGTGGTCCTCACCTTCACCCTTACCTTTACTTACTACTGTTTCTTGCCTCGATTCT
GGTTCAAGTGTAACTAACCTTTCCTCATCTTGAATGGTAATTGCATTGATTTTCTCCCTTAGGTT
AGATTCAGTGTTACTCGAGAGGCTACCTTGTGGTCGTTCAGATATCAATTTACCGAGTTGACCTA
TCTGAGTTTCGAGCCCTTAGATCGATGCTTGTTGATTTTTAAGTGCTGTCTTGGTATTTTGAAAA
TGAGTTTCTGACACTGAGATGAATTTTG
Found at i:26494955 original size:20 final size:19
Alignment explanation
Indices: 26494917--26494956 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
26494907 ACCTGTAAGA
* *
26494917 AGAAAATAAATGAAGAATT
1 AGAAAATAAATAAAAAATT
26494936 AGAAAATAAAATAAAAAATT
1 AGAAAAT-AAATAAAAAATT
26494956 A
1 A
26494957 AATTGCAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.70, C:0.00, G:0.10, T:0.20
Consensus pattern (19 bp):
AGAAAATAAATAAAAAATT
Found at i:26497559 original size:21 final size:20
Alignment explanation
Indices: 26497535--26497574 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26497525 CGCAGGGCTC
26497535 ACACGCCCGTATGGTCTAGGG
1 ACACGCCCGTATGGT-TAGGG
*
26497556 ACACGCCCGTGTGGTTAGG
1 ACACGCCCGTATGGTTAGG
26497575 CTGTGTACTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.17, C:0.28, G:0.35, T:0.20
Consensus pattern (20 bp):
ACACGCCCGTATGGTTAGGG
Found at i:26500338 original size:29 final size:29
Alignment explanation
Indices: 26500304--26500399 Score: 115
Period size: 29 Copynumber: 3.3 Consensus size: 29
26500294 CTGACGAATG
*
26500304 AAAAGGGATAGCTTTGGCTATCGAAT-TCA
1 AAAAGGGATAGCTTCGGCTATCGAATAT-A
* * *
26500333 AAAAGGAATAGCTTCAGCTATCGAATATG
1 AAAAGGGATAGCTTCGGCTATCGAATATA
*
26500362 AAAAGGGATAGCTTCGGCTATC-AATGATG
1 AAAAGGGATAGCTTCGGCTATCGAAT-ATA
26500391 AAAAGGGAT
1 AAAAGGGAT
26500400 GGTGATGACC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
28 3 0.05
29 55 0.93
30 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (29 bp):
AAAAGGGATAGCTTCGGCTATCGAATATA
Found at i:26502197 original size:43 final size:43
Alignment explanation
Indices: 26502149--26502245 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 43
26502139 TTGTGATTCG
*
26502149 TGTAAGACCATGCCTAGGACATTGGCATCGA-AGTGAGAAAACA
1 TGTAAGACCATGCCTAGGACAGTGGCATCGATA-TGAGAAAACA
* * * * * * *
26502192 TGTAAGACCCTGTCTGGGACAGTGGCATTGATATGTGATAGCA
1 TGTAAGACCATGCCTAGGACAGTGGCATCGATATGAGAAAACA
26502235 TGTAAGACCAT
1 TGTAAGACCAT
26502246 ATCCGGGATA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
43 43 0.98
44 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (43 bp):
TGTAAGACCATGCCTAGGACAGTGGCATCGATATGAGAAAACA
Found at i:26515875 original size:27 final size:26
Alignment explanation
Indices: 26515837--26515919 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
26515827 TGGAGGAAGC
26515837 GTTCTGGTGGCTAC-ACCACAAATATCT
1 GTTCTGGTGGCT-CTACCAC-AATATCT
*
26515864 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTACCACAATATCT
* * **
26515890 GTATCTAGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTACCACAATATCT
26515917 GTT
1 GTT
26515920 ATGGCAGCCA
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
26 11 0.22
27 39 0.78
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (26 bp):
GTTCTGGTGGCTCTACCACAATATCT
Found at i:26523225 original size:27 final size:26
Alignment explanation
Indices: 26523180--26523252 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 26
26523170 CAGTGGCTAC
26523180 GCCACAAATATCTGTTCTGGCAACTCT
1 GCCAC-AATATCTGTTCTGGCAACTCT
* **
26523207 GCCATAATATCTGTATCTGGTGACTCT
1 GCCACAATATCTGT-TCTGGCAACTCT
26523234 GCCACAATATCTGTTCTGG
1 GCCACAATATCTGTTCTGG
26523253 TAGCCATGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 14 0.34
27 27 0.66
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGCAACTCT
Found at i:26524288 original size:55 final size:55
Alignment explanation
Indices: 26524182--26524294 Score: 127
Period size: 55 Copynumber: 2.1 Consensus size: 55
26524172 CGAGCCTGCC
* * * **
26524182 AAAACAACACGGGCGTGCGACACGCCCGTGTAGAAGACTCATGGTTGAACCTGTT
1 AAAACAACACGGGAGTGCGACACGCCCGTGTAGAACACCCATGGTCAAACCTGTT
* * ** * *
26524237 AAAACAGCACGGGAGTGTGACACGCCCGTGTCTAACACCCGTGGTCAAACCTTTT
1 AAAACAACACGGGAGTGCGACACGCCCGTGTAGAACACCCATGGTCAAACCTGTT
26524292 AAA
1 AAA
26524295 TTGACACGGA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.19
Consensus pattern (55 bp):
AAAACAACACGGGAGTGCGACACGCCCGTGTAGAACACCCATGGTCAAACCTGTT
Found at i:26533408 original size:25 final size:23
Alignment explanation
Indices: 26533368--26533415 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 23
26533358 TGCATTATGG
26533368 AAGGAAAATAAAGAAATGAAAAAAA
1 AAGGAAAATAAAGAAA--AAAAAAA
* *
26533393 AAGGAAAATGATGAAAAAAAAAA
1 AAGGAAAATAAAGAAAAAAAAAA
26533416 GAGTGTGGAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
25 14 0.67
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (23 bp):
AAGGAAAATAAAGAAAAAAAAAA
Found at i:26534738 original size:29 final size:29
Alignment explanation
Indices: 26534705--26534835 Score: 122
Period size: 29 Copynumber: 4.5 Consensus size: 29
26534695 GTGACGAGAT
26534705 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
26534734 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
26534763 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
26534792 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
26534821 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
26534836 GAAATCGAGT
Statistics
Matches: 82, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
28 2 0.02
29 79 0.96
30 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:26541826 original size:63 final size:64
Alignment explanation
Indices: 26541712--26541839 Score: 186
Period size: 63 Copynumber: 2.0 Consensus size: 64
26541702 CGCCAAAAAC
* * * *
26541712 TTGATACGTGATATTCGCGATAGGTTTTAAAAATTTATAATTAATCGTTCTTGAAACTAACTAT
1 TTGATACGTGATATTCGCGACAGGTTTTAAAAATTTATAATGAATCATTCTTAAAACTAACTAT
* * *
26541776 TTGAT-CGTGATTTTCGTGACAGGTTTTAAATATTTATAATGAATCATTCTTAAAACTAACTAT
1 TTGATACGTGATATTCGCGACAGGTTTTAAAAATTTATAATGAATCATTCTTAAAACTAACTAT
26541839 T
1 T
26541840 GTCACGATGT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
63 52 0.91
64 5 0.09
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (64 bp):
TTGATACGTGATATTCGCGACAGGTTTTAAAAATTTATAATGAATCATTCTTAAAACTAACTAT
Found at i:26551620 original size:27 final size:28
Alignment explanation
Indices: 26551589--26551656 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 28
26551579 ATAGTGAGTC
*
26551589 CACACTTAGTGCTATATAATC-AACTTG
1 CACACTTAGTGCTATATAATCAAACTCG
26551616 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
26551644 CACACTTAGTGCT
1 CACACTTAGTGCT
26551657 GTACAAATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:26557387 original size:71 final size:71
Alignment explanation
Indices: 26557224--26557387 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
26557214 GAGATGTATC
*
26557224 CCATGTAGACAAGAGAGCTACATGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26557289 AGGACA
66 AGGACA
26557295 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26557360 AGGACA
66 AGGACA
26557366 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
26557388 AGACAAATCG
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 92 1.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:26570613 original size:41 final size:41
Alignment explanation
Indices: 26570568--26570685 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
26570558 TGAAAGATAA
26570568 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
26570609 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26570639 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26570680 ATGTAG
1 ATGTAG
26570686 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:26570624 original size:71 final size:71
Alignment explanation
Indices: 26570536--26570699 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26570526 GAGATGTATC
26570536 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26570601 AGGACA
66 AGGACA
26570607 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26570672 AGGACA
66 AGGACA
26570678 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
26570700 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:26583123 original size:26 final size:28
Alignment explanation
Indices: 26583093--26583161 Score: 124
Period size: 26 Copynumber: 2.5 Consensus size: 28
26583083 ATAGTGAGTC
26583093 CGCACACTTAGTGCTATAT-ATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26583119 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
26583147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26583162 GTACAAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 19 0.46
27 3 0.07
28 19 0.46
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26587680 original size:46 final size:45
Alignment explanation
Indices: 26587624--26587790 Score: 169
Period size: 46 Copynumber: 3.6 Consensus size: 45
26587614 TGGTTGAGCA
*
26587624 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-CTATGGATGCAAATG
* * * *
26587670 TCCGAGCTCGTTGAGTTGAGTCCGAGTT--C-GTGAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATG-GATGCAA--ATG
* *
26587715 CACCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACG
1 -TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-ATGGATGCAAATG
* * *
26587762 CCCGAGCTCGTTGAGTTGAGTCTGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
26587791 GCTTATGGGC
Statistics
Matches: 100, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
45 2 0.02
46 79 0.79
47 2 0.02
48 1 0.01
49 6 0.06
50 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCAAATG
Found at i:26592797 original size:43 final size:43
Alignment explanation
Indices: 26592706--26592810 Score: 113
Period size: 43 Copynumber: 2.4 Consensus size: 43
26592696 GTGTGATTCG
26592706 TGTAAGACCATGTCTGGGACATTGGCATGGAAGTGAGAAAACA
1 TGTAAGACCATGTCTGGGACATTGGCATGGAAGTGAGAAAACA
* * * * * * * *
26592749 CGTAAGGCCCTGTCTGGTACATTGGCATTGATA-TGTGATAGCA
1 TGTAAGACCATGTCTGGGACATTGGCATGGA-AGTGAGAAAACA
*
26592792 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
26592811 TATAGCATAG
Statistics
Matches: 48, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
43 47 0.98
44 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATGGAAGTGAGAAAACA
Found at i:26594474 original size:27 final size:28
Alignment explanation
Indices: 26594425--26594505 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
26594415 ACCCCTACAT
* *
26594425 ACATGCATATGGCCCA-CTTGGCCCA-TC
1 ACATTCATATGGCCCATC-AGGCCCATTC
*
26594452 TCATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCC-ATTC
* *
26594481 ACATTCATATGGGCCATTAGGCCCA
1 ACATTCATATGGCCCATCAGGCCCA
26594506 AATCACCTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
27 19 0.42
28 3 0.07
29 23 0.51
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATCAGGCCCATTC
Found at i:26594497 original size:29 final size:29
Alignment explanation
Indices: 26594453--26594540 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
26594443 TGGCCCATCT
*
26594453 CATTCATATGGCCCATCAGGCCCAATTCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
* *
26594482 CATTCATATGGGCCATTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
* * * * *
26594511 CCTTTATATAGCCCGTTAGGCCCAAATCA
1 CATTCATATGGCCCATCAGGCCCAAATCA
26594540 C
1 C
26594541 CTTATATTCA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
CATTCATATGGCCCATCAGGCCCAAATCA
Found at i:26594771 original size:8 final size:8
Alignment explanation
Indices: 26594758--26594792 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
26594748 GTAGCCAAAC
26594758 TTTCGGCT
1 TTTCGGCT
26594766 TTTCGGCAT
1 TTTCGGC-T
26594775 TTT-GGCT
1 TTTCGGCT
26594782 TTTCGGCT
1 TTTCGGCT
26594790 TTT
1 TTT
26594793 GCCGATCTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 4 0.16
8 17 0.68
9 4 0.16
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.54
Consensus pattern (8 bp):
TTTCGGCT
Found at i:26601555 original size:40 final size:40
Alignment explanation
Indices: 26601506--26601788 Score: 374
Period size: 40 Copynumber: 7.1 Consensus size: 40
26601496 CGGAATTTCG
* * * *
26601506 CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
26601546 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26601586 CTGGTTATAGTGACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26601626 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26601666 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTGGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26601706 CCGGATATAGTAACTCGCACAAATGCCTTCAGG-TTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * * *
26601745 CCAGA-ATTAGTCACTAGCACAAATGCTTTCTGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
26601785 CCGG
1 CCGG
26601789 TTATCATCCG
Statistics
Matches: 217, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
38 1 0.00
39 31 0.14
40 185 0.85
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26607760 original size:32 final size:32
Alignment explanation
Indices: 26607719--26607782 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26607709 CTATGTCAGC
26607719 GCAAAAGTATGTAAGGAAAGGTTGCAATGCTT
1 GCAAAAGTATGTAAGGAAAGGTTGCAATGCTT
26607751 GCAAAAGTATGTAAGGAAAGGTTGCAATGCTT
1 GCAAAAGTATGTAAGGAAAGGTTGCAATGCTT
26607783 ACCTTGCCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.25
Consensus pattern (32 bp):
GCAAAAGTATGTAAGGAAAGGTTGCAATGCTT
Found at i:26616453 original size:28 final size:27
Alignment explanation
Indices: 26616410--26616496 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
26616400 GGAGGAAGCA
*
26616410 TTCTGGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTCTGCCAC-AATATCTAT
* * *
26616438 TTCTGGTGGCTCTGCCATAATATTTGT
1 TTCTGGTGGCTCTGCCACAATATCTAT
* * * *
26616465 ATCTGGTGACTCTGTCACAATAGCTA-
1 TTCTGGTGGCTCTGCCACAATATCTAT
26616491 TTCTGG
1 TTCTGG
26616497 CAGCCATGCT
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
26 5 0.11
27 26 0.55
28 16 0.34
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTAT
Found at i:26626827 original size:14 final size:13
Alignment explanation
Indices: 26626807--26626838 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
26626797 AATATTTAAC
26626807 TTGTTCTTAATTA
1 TTGTTCTTAATTA
26626820 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
26626834 TTGTT
1 TTGTT
26626839 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:26637973 original size:13 final size:13
Alignment explanation
Indices: 26637955--26637982 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26637945 TCTCACTCTA
26637955 ACATGTACTTATG
1 ACATGTACTTATG
26637968 ACATGTACTTATG
1 ACATGTACTTATG
26637981 AC
1 AC
26637983 CATTAGGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (13 bp):
ACATGTACTTATG
Found at i:26642484 original size:27 final size:26
Alignment explanation
Indices: 26642353--26642876 Score: 291
Period size: 27 Copynumber: 19.5 Consensus size: 26
26642343 AGAATTACTG
**
26642353 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTT-GTTTGTAAAATTACCA
*
26642380 AAATACCCTTGATTAGTAAAATTACCA
1 AAATACCCTTG-TTTGTAAAATTACCA
* * **
26642407 AAATACCCCTAGTTTGGAAAATTACTG
1 AAATA-CCCTTGTTTGTAAAATTACCA
** *
26642434 AAATACCCTAATTTGTAAAATTACTA
1 AAATACCCTTGTTTGTAAAATTACCA
* * *
26642460 AAATACCCTTGTAATGTAGAATTACCG
1 AAATACCCTTGT-TTGTAAAATTACCA
* *
26642487 AAATA-CCTTCGATTTGTAAAATTAACG
1 AAATACCCTT-G-TTTGTAAAATTACCA
* * * *
26642514 AGATACCTTTGATTTGTAAAATAACCG
1 AAATACCCTTG-TTTGTAAAATTACCA
* * * * *
26642541 AAACACCCTCGTAGTGTAAAATTATCG
1 AAATACCCTTGT-TTGTAAAATTACCA
* *
26642568 AAATA-CCTTCAATTTGTAAAATTACCG
1 AAATACCCTT--GTTTGTAAAATTACCA
* *
26642595 AAATA-CCTTCAATTTGTAAAATTATCA
1 AAATACCCTT--GTTTGTAAAATTACCA
* * * *
26642622 AAATACCCTTGTAGTGTAGAATTATCG
1 AAATACCCTTGT-TTGTAAAATTACCA
** *
26642649 AAATACCCTTGATTTGTAAAATTTTCG
1 AAATACCCTTG-TTTGTAAAATTACCA
*** *
26642676 AAATACCCCCAATTTGTAAAATTATCA
1 AAATA-CCCTTGTTTGTAAAATTACCA
* * *
26642703 AAATGTCCC-TGATTTGTAAAATTATCG
1 AAAT-ACCCTTG-TTTGTAAAATTACCA
** * * *
26642730 AAATACCCTTGCAGTGTAGAATTATCG
1 AAATACCCTTG-TTTGTAAAATTACCA
* *
26642757 AAATACCCTCGATTTGTAAAATTACCG
1 AAATACCCTTG-TTTGTAAAATTACCA
* * *
26642784 AAATACTCTTGATTTGTAAAATTATCG
1 AAATACCCTTG-TTTGTAAAATTACCA
* * *
26642811 AAATACCCTCGATTTATAAAATTATCA
1 AAATACCCTTG-TTTGTAAAATTACCA
* * *
26642838 AAATACCCTTTTTGTGTAGAATTACCG
1 AAATACCCTTGTT-TGTAAAATTACCA
*
26642865 AAATACCTTTGT
1 AAATACCCTTGT
26642877 AGTCTAAAAT
Statistics
Matches: 400, Mismatches: 80, Indels: 34
0.78 0.16 0.07
Matches are distributed among these distances:
26 43 0.11
27 339 0.85
28 18 0.05
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.33
Consensus pattern (26 bp):
AAATACCCTTGTTTGTAAAATTACCA
Found at i:26642570 original size:81 final size:81
Alignment explanation
Indices: 26642370--26642886 Score: 471
Period size: 81 Copynumber: 6.4 Consensus size: 81
26642360 CTTGGTTTAC
* * * * * *
26642370 AAAATTACCAAAATACCCTTG-ATTAGTAAAATTACCAAAATACC-CCTAGTTTGGAAAATTA-C
1 AAAATTACCAAAATACCCTTGTAGT-GTAAAATTATCGAAATACCTTCGA-TTTGTAAAATTATC
26642432 TGAAATACCCT-AATTTGT
64 -GAAATACCCTCAATTTGT
* * * * *
26642450 AAAATTACTAAAATACCCTTGTAATGTAGAATTACCGAAATACCTTCGATTTGTAAAATTAACGA
1 AAAATTACCAAAATACCCTTGTAGTGTAAAATTATCGAAATACCTTCGATTTGTAAAATTATCGA
* * **
26642515 GATACCTTTGATTTGT
66 AATACCCTCAATTTGT
* * * * * *
26642531 AAAATAACCGAAACACCCTCGTAGTGTAAAATTATCGAAATACCTTCAATTTGTAAAATTACCGA
1 AAAATTACCAAAATACCCTTGTAGTGTAAAATTATCGAAATACCTTCGATTTGTAAAATTATCGA
*
26642596 AATACCTTCAATTTGT
66 AATACCCTCAATTTGT
* * *
26642612 AAAATTATCAAAATACCCTTGTAGTGTAGAATTATCGAAATACCCTT-GATTTGTAAAATTTTCG
1 AAAATTACCAAAATACCCTTGTAGTGTAAAATTATCGAAATA-CCTTCGATTTGTAAAATTATCG
*
26642676 AAATACCCCCAATTTGT
65 AAATACCCTCAATTTGT
* * * * *
26642693 AAAATTATCAAAATGTCCC-TG-ATTTGTAAAATTATCGAAATACCCTT-GCA-GTGTAGAATTA
1 AAAATTACCAAAAT-ACCCTTGTA-GTGTAAAATTATCGAAATA-CCTTCG-ATTTGTAAAATTA
*
26642754 TCGAAATACCCTCGATTTGT
62 TCGAAATACCCTCAATTTGT
* * * * * *
26642774 AAAATTACCGAAATACTCTTG-ATTTGTAAAATTATCGAAATACCCTCGATTTATAAAATTATCA
1 AAAATTACCAAAATACCCTTGTA-GTGTAAAATTATCGAAATACCTTCGATTTGTAAAATTATCG
**
26642838 AAATACCCT-TTTTGTGT
65 AAATACCCTCAATT-TGT
* * * *
26642855 AGAATTACCGAAATACCTTTGTAGTCTAAAAT
1 AAAATTACCAAAATACCCTTGTAGTGTAAAAT
26642887 GACCAGCATA
Statistics
Matches: 366, Mismatches: 58, Indels: 25
0.82 0.13 0.06
Matches are distributed among these distances:
80 65 0.18
81 292 0.80
82 9 0.02
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGTAGTGTAAAATTATCGAAATACCTTCGATTTGTAAAATTATCGA
AATACCCTCAATTTGT
Found at i:26642886 original size:54 final size:53
Alignment explanation
Indices: 26642352--26642871 Score: 440
Period size: 54 Copynumber: 9.6 Consensus size: 53
26642342 TAGAATTACT
* ** * * * *
26642352 GAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGATTAGTAAAATTACC
1 GAAATACCCTT-ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
* * * * *
26642406 AAAATACCCCTAGTTTGGAAAATTACTGAAATACCCT-AATTTGTAAAATTA-C
1 GAAATACCCTTA-TTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
* * * * * *
26642458 TAAAATACCCTTGTAATGTAGAATTACCGAAATACCTTCGATTTGTAAAATTAAC
1 -GAAATACCCTTAT-TTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
* * * * *
26642513 GAGATACCTTTGATTTGTAAAATAACCGAAACACCCTCG-TAGTGTAAAATTATC
1 GAAATACCCTT-ATTTGTAAAATTACCGAAATACCCTCGAT-TTGTAAAATTATC
* *
26642567 GAAATA-CCTTCAATTTGTAAAATTACCGAAATACCTTCAATTTGTAAAATTATC
1 GAAATACCCTT--ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
* * * * * * *
26642621 AAAATACCCTTGTAGTGTAGAATTATCGAAATACCCTTGATTTGTAAAATTTTC
1 GAAATACCCTTAT-TTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
** * * *
26642675 GAAATACCCCCAATTTGTAAAATTATCAAAATGTCCCT-GATTTGTAAAATTATC
1 GAAATA-CCCTTATTTGTAAAATTACCGAAAT-ACCCTCGATTTGTAAAATTATC
* * * *
26642729 GAAATACCCTTGCA-GTGTAGAATTATCGAAATACCCTCGATTTGTAAAATTACC
1 GAAATACCCTT--ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
* * *
26642783 GAAATACTCTTGATTTGTAAAATTATCGAAATACCCTCGATTTATAAAATTATC
1 GAAATACCCTT-ATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
* * *
26642837 AAAATACCCTTTTTGTGTAGAATTACCGAAATACC
1 GAAATACCCTTATT-TGTAAAATTACCGAAATACC
26642872 TTTGTAGTCT
Statistics
Matches: 376, Mismatches: 72, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
52 2 0.01
53 55 0.15
54 303 0.81
55 16 0.04
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.33
Consensus pattern (53 bp):
GAAATACCCTTATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC
Found at i:26643198 original size:41 final size:41
Alignment explanation
Indices: 26643152--26643253 Score: 168
Period size: 41 Copynumber: 2.5 Consensus size: 41
26643142 GAAGTATATG
26643152 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
* * * *
26643193 AGGATCACATGGTTGCTTGACGACTGTGGATCCACTGATTG
1 AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
26643234 AGGATCGCATGGTTGCTTGA
1 AGGATCGCATGGTTGCTTGA
26643254 TAATGTGGAT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (41 bp):
AGGATCGCATGGTTGCTTGACGACCGTGGATCCACCGATTA
Found at i:26643466 original size:22 final size:22
Alignment explanation
Indices: 26643441--26643495 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
26643431 CCTAAATATT
*
26643441 GCTTTGTGCCATCTTGACTATG
1 GCTTCGTGCCATCTTGACTATG
26643463 GCTTCGTGCCATCTTGACTATG
1 GCTTCGTGCCATCTTGACTATG
26643485 GCTTCGTGCCA
1 GCTTCGTGCCA
26643496 AACGTATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.13, C:0.27, G:0.24, T:0.36
Consensus pattern (22 bp):
GCTTCGTGCCATCTTGACTATG
Found at i:26645689 original size:34 final size:34
Alignment explanation
Indices: 26645651--26645738 Score: 167
Period size: 34 Copynumber: 2.6 Consensus size: 34
26645641 GTACTGATAT
26645651 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
1 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
*
26645685 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAT
1 GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
26645719 GGGCTAAGGCCCAGACTGCT
1 GGGCTAAGGCCCAGACTGCT
26645739 ACTGTTACTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 53 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (34 bp):
GGGCTAAGGCCCAGACTGCTTTTATCACTGAAAA
Found at i:26645749 original size:34 final size:34
Alignment explanation
Indices: 26645643--26645751 Score: 146
Period size: 34 Copynumber: 3.2 Consensus size: 34
26645633 TGCATACTGT
* **
26645643 ACTGATATGGGCTAAGGCCCAGACTGCTTTTATC
1 ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
* **
26645677 ACTGAAAAGGGCTAAGGCCCAGACTGCTTTTATC
1 ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
* *
26645711 ACTGAAATGGGCTAAGGCCCAGACTGCTACTGTT
1 ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
26645745 ACTGAAA
1 ACTGAAA
26645752 AGGGGTTAAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (34 bp):
ACTGAAATGGGCTAAGGCCCAGACTGCTACTATC
Found at i:26646623 original size:36 final size:36
Alignment explanation
Indices: 26646572--26646644 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
26646562 AGTAGCGAAA
26646572 ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
1 ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
* *
26646608 ATGTACCATTGCTAGTTAAATTATTAATTTAGCCAT
1 ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
26646644 A
1 A
26646645 CATCATGCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.40
Consensus pattern (36 bp):
ATGTACCATTACTAGTCAAATTATTAATTTAGCCAT
Found at i:26650369 original size:28 final size:28
Alignment explanation
Indices: 26650323--26650391 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
26650313 TTTAAAACCC
*
26650323 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
26650350 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
26650378 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
26650392 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:26652030 original size:20 final size:20
Alignment explanation
Indices: 26652007--26652044 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26651997 CACATCCAAA
*
26652007 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
26652027 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
26652045 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:26658346 original size:28 final size:28
Alignment explanation
Indices: 26658300--26658368 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
26658290 TTTAAAACCC
*
26658300 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
26658327 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
26658355 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
26658369 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:26660605 original size:47 final size:46
Alignment explanation
Indices: 26660533--26660989 Score: 242
Period size: 47 Copynumber: 9.9 Consensus size: 46
26660523 TGGGGTTATG
* *
26660533 TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA
* * * **
26660581 TGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-TGTGTCA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGA
* * * * * *
26660627 TGATTGCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGG
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGA
* *
26660675 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GA
* * * * * *
26660722 TG-TTAGCCAGTGTAAGACGTGT-TCGGGACATGCAT-TG-AGTAAGT
1 TGAGT-GCCAGTGTAAGACATGTCT-GGGACATGCATCGGCATTGAGA
** * * *
26660766 TTCGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA-GA
* * * * *
26660813 TG-TTAGCCAGTGTAAGACGTGTCT-GGACATGCAT-TG-AGT-AAA
1 TGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
** * * * * *
26660855 TTTCGTGCTAGTGTAAGACATGTCTTGGACATGCATCAGCATGTATACA
1 -TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-T-GAGA
* * * * *
26660904 CGAGAGCTAGTGTAAGACCATGTCTGGGACATTGACCTC-G-ATGGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACA-TG-CATCGGCATTGAGA
* *
26660951 T-A--GCCAGTGTAAGACCATGTCTGGAACATGGCAGCGGCA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA
26660990 ACTTAACCCA
Statistics
Matches: 312, Mismatches: 70, Indels: 57
0.71 0.16 0.13
Matches are distributed among these distances:
42 1 0.00
43 22 0.07
44 65 0.21
45 8 0.03
46 51 0.16
47 92 0.29
48 50 0.16
49 17 0.05
50 3 0.01
51 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (46 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA
Found at i:26660690 original size:48 final size:45
Alignment explanation
Indices: 26660533--26660891 Score: 246
Period size: 47 Copynumber: 7.8 Consensus size: 45
26660523 TGGGGTTATG
* * *
26660533 TGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-GTGAGA
* * * **
26660581 TGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTGTGTCA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-GTGAGA
* * * *
26660627 TGATTGCCCGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGG
1 TGAGTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGT-GAGA
*
26660675 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGT-GA-GA
* * * * * *
26660722 TG-TTAGCCAGTGTAAGACGTGT-TCGGGACATGCAT-TGAGTAAGT
1 TGAGT-GCCAGTGTAAGACATGTCT-GGGACATGCATCGGCGTGAGA
** * *
26660766 TTCGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGA
1 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGT-GA-GA
* * * * *
26660813 TG-TTAGCCAGTGTAAGACGTGTCT-GGACATGCAT-TGAGT-AAA
1 TGAGT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTGAGA
** * *
26660855 TTTCGTGCTAGTGTAAGACATGTCTTGGACATGCATC
1 -TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATC
26660892 AGCATGTATA
Statistics
Matches: 244, Mismatches: 51, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
42 1 0.00
43 19 0.08
44 39 0.16
45 7 0.03
46 50 0.20
47 91 0.37
48 37 0.15
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (45 bp):
TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTGAGA
Found at i:26660750 original size:94 final size:90
Alignment explanation
Indices: 26660581--26660891 Score: 360
Period size: 91 Copynumber: 3.4 Consensus size: 90
26660571 GGCATTGAGA
* * *
26660581 TGAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CT-G-TGTCATGATT-GCCCGTGTAA
1 TGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATG--ATG-TTAGCCAGTGTAA
** * *
26660642 GACCACGTCTGGGACATGGCATCGGCGTAGAGG
63 GA-CGTGTC-GGGACAT-GCAT-GGAGTA-AGT
*
26660675 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGAC
1 TGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGAC
*
26660740 GTGTTCGGGACATGCATTGAGTAAGT
66 GTG-TCGGGACATGCATGGAGTAAGT
**
26660766 TTCGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGAC
1 TGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGAC
* * *
26660831 GTGTCTGGACATGCATTGAGTAAAT
66 GTGTCGGGACATGCATGGAGTAAGT
** *
26660856 TTCGTGCTAGTGTAAGACATGTCTTGGACATGCATC
1 TGAGTGCTAGTGTAAGACATGTCTGGGACATGCATC
26660892 AGCATGTATA
Statistics
Matches: 197, Mismatches: 15, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
90 55 0.28
91 67 0.34
92 4 0.02
93 4 0.02
94 46 0.23
95 18 0.09
96 1 0.01
97 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (90 bp):
TGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGAC
GTGTCGGGACATGCATGGAGTAAGT
Found at i:26660794 original size:44 final size:44
Alignment explanation
Indices: 26660730--26660890 Score: 152
Period size: 44 Copynumber: 3.6 Consensus size: 44
26660720 GATGTTAGCC
*
26660730 AGTGTAAGACGTGT-TCGGGACATGCATTGAGTAAGTTTCGTGCT
1 AGTGTAAGACATGTCT-GGGACATGCATTGAGTAAGTTTCGTGCT
* * * *
26660774 AGTGTAAGACATGTCTGGGACATGCATCG-GCCTCGATGATGTT--AGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGAG--T--AAG-T-TTCGTGCT
* *
26660821 AGTGTAAGACGTGTCT-GGACATGCATTGAGTAAATTTCGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATTGAGTAAGTTTCGTGCT
*
26660864 AGTGTAAGACATGTCTTGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
26660891 CAGCATGTAT
Statistics
Matches: 94, Mismatches: 12, Indels: 22
0.73 0.09 0.17
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 19 0.20
44 35 0.37
45 3 0.03
46 11 0.12
47 20 0.21
48 1 0.01
49 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATTGAGTAAGTTTCGTGCT
Found at i:26660921 original size:91 final size:90
Alignment explanation
Indices: 26660678--26660891 Score: 383
Period size: 91 Copynumber: 2.4 Consensus size: 90
26660668 GTAGAGGTGA
*
26660678 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTG
* *
26660743 TTCGGGACATGCATTGAGTAAGTTTC
66 -TCTGGACATGCATTGAGTAAATTTC
26660769 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTG
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTG
26660834 TCTGGACATGCATTGAGTAAATTTC
66 TCTGGACATGCATTGAGTAAATTTC
*
26660859 GTGCTAGTGTAAGACATGTCTTGGACATGCATC
1 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
26660892 AGCATGTATA
Statistics
Matches: 119, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
90 55 0.46
91 64 0.54
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (90 bp):
GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGTTAGCCAGTGTAAGACGTG
TCTGGACATGCATTGAGTAAATTTC
Found at i:26661158 original size:19 final size:19
Alignment explanation
Indices: 26661134--26661171 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26661124 TGGTAATGAG
26661134 TAAGTCCAGTTTATACTTA
1 TAAGTCCAGTTTATACTTA
26661153 TAAGTCCAGTTTATACTTA
1 TAAGTCCAGTTTATACTTA
26661172 CCTTTGAGCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (19 bp):
TAAGTCCAGTTTATACTTA
Found at i:26661822 original size:55 final size:55
Alignment explanation
Indices: 26661717--26661835 Score: 127
Period size: 55 Copynumber: 2.2 Consensus size: 55
26661707 CTTAAACTTT
* * * * *
26661717 TAAA-TCAGTATTGTCCATGGTTAGGCCACACGATCATGTGCCATAGCCGTG-TC
1 TAAAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGCCATAGCCGTGCCC
* * *
26661770 TATAAGTCAGTATTGCCCACGGGTAGGCCACACGGGCGTGTGTCAT-GCCCGTGCCC
1 TA-AAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGCCATAG-CCGTGCCC
26661826 TAAAGTCAGT
1 TAAAGTCAGT
26661836 GTCGCACAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
53 2 0.04
54 3 0.06
55 46 0.85
56 3 0.06
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.25
Consensus pattern (55 bp):
TAAAGTCAGTATTGCCCACGGGTAGGCCACACGAGCATGTGCCATAGCCGTGCCC
Found at i:26664342 original size:47 final size:48
Alignment explanation
Indices: 26664273--26664505 Score: 249
Period size: 47 Copynumber: 4.8 Consensus size: 48
26664263 AGCCGAAGCT
* * * *
26664273 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATG-GCTAATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGCCAATA
* *
26664320 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATC-ATA
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCG-CCAATA
* * * * * *
26664368 GTTTTCGGTACGCATAGTAGCCTGCACTTAGTACTACACAAGCGGCCAATT
1 -ATCT-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGC-GCCAATA
* * * *
26664419 A-C-GGTACACGTAGTAGCCTGCACTTAGTACTTCAAATGCGACCAATT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCG-CCAATA
26664466 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
26664506 TGACCTCACA
Statistics
Matches: 154, Mismatches: 23, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
46 1 0.01
47 76 0.49
48 5 0.03
49 35 0.23
50 34 0.22
51 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGCCAATA
Found at i:26664387 original size:97 final size:95
Alignment explanation
Indices: 26664272--26664503 Score: 306
Period size: 97 Copynumber: 2.4 Consensus size: 95
26664262 TAGCCGAAGC
* *
26664272 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA-TGGCTAATAATCTGGTACACGTAGT
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACAGCGGCCAATAA-C-GGTACACGTAGT
* * *
26664336 AGCCTGCACTTAGTACTACACACGTGATCATAGT
64 AGCCTGCACTTAGTACTACAAACGCGACCA-A-T
* *
26664370 TTTC-GGTACGCATAGTAGCCTGCACTTAGTACTACACAAGCGGCCAATTACGGTACACGTAGTA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACAC-AGCGGCCAATAACGGTACACGTAGTA
* *
26664434 GCCTGCACTTAGTACTTCAAATGCGACCAAT
65 GCCTGCACTTAGTACTACAAACGCGACCAAT
* *
26664465 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACA
26664504 CGTGACCTCA
Statistics
Matches: 119, Mismatches: 12, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
95 5 0.04
96 32 0.27
97 70 0.59
98 5 0.04
99 7 0.06
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (95 bp):
TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACAGCGGCCAATAACGGTACACGTAGTAG
CCTGCACTTAGTACTACAAACGCGACCAAT
Found at i:26670041 original size:49 final size:49
Alignment explanation
Indices: 26669964--26670151 Score: 214
Period size: 49 Copynumber: 3.8 Consensus size: 49
26669954 GTAGCCGAAC
* * *
26669964 TATCTGGTACGCATAGTAACCTGTACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * * *
26670013 AATCTGGTACACGTAGTAGCTTGCACTTAGTACTACACACGTGATCATAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCA-A-T
* * * * * *
26670064 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTTCAAATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
26670113 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
26670152 CGTGACCTCA
Statistics
Matches: 109, Mismatches: 28, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
49 71 0.65
50 2 0.02
51 36 0.33
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:26670092 original size:100 final size:100
Alignment explanation
Indices: 26669969--26670156 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
26669959 CGAACTATCT
** * *
26669969 GGTACGCATAGTAACCTGTACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCT
1 GGTACGCATAGTAACCTACACTTAGTACTACAAATGCGACCAATAATCTGGTACACGTAGTAGCC
26670034 TGCACTTAGTACTACACACGTGATCATAGTTTTCG
66 TGCACTTAGTACTACACACGTGATCATAGTTTTCG
* * *
26670069 GGTACGCATAGTAGCCTACACTTAGTACTTCAAATGCGACCAATTATCTGGTACACGTAGTAGCC
1 GGTACGCATAGTAACCTACACTTAGTACTACAAATGCGACCAATAATCTGGTACACGTAGTAGCC
26670134 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
26670157 CCTCACAATA
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (100 bp):
GGTACGCATAGTAACCTACACTTAGTACTACAAATGCGACCAATAATCTGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCATAGTTTTCG
Found at i:26672885 original size:29 final size:29
Alignment explanation
Indices: 26672850--26672907 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26672840 TGAAATAATT
26672850 TTTAGCGTTTGAATGCTTAATTTGAAAAA
1 TTTAGCGTTTGAATGCTTAATTTGAAAAA
*
26672879 TTTAGCGTTTGAATGTTTAATTTGAAAAA
1 TTTAGCGTTTGAATGCTTAATTTGAAAAA
26672908 AGGACTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.05, G:0.17, T:0.43
Consensus pattern (29 bp):
TTTAGCGTTTGAATGCTTAATTTGAAAAA
Found at i:26673057 original size:13 final size:14
Alignment explanation
Indices: 26673038--26673070 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
26673028 TTAAATGGGC
26673038 ATTAAATGGATTTT
1 ATTAAATGGATTTT
*
26673052 -TTAAATGGTTTTT
1 ATTAAATGGATTTT
26673065 ATTAAA
1 ATTAAA
26673071 AGTTAATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (14 bp):
ATTAAATGGATTTT
Found at i:26674278 original size:21 final size:21
Alignment explanation
Indices: 26674248--26674336 Score: 81
Period size: 21 Copynumber: 4.1 Consensus size: 21
26674238 CTCACAGAGA
* *
26674248 AAAAAG-GAAGTGAGTTAGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
26674268 AAAAAGAGAAGCAACTTGGAC
1 AAAAAGAGAAGTAACTTAGAC
* *
26674289 AAAAAGAGAAGTAACTTGGAA
1 AAAAAGAGAAGTAACTTAGAC
*
26674310 AAAAAGAAACGAAGTGACTTAGAC
1 AAAAAG--A-GAAGTAACTTAGAC
26674334 AAA
1 AAA
26674337 TATTTTTTGT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
20 6 0.11
21 35 0.62
23 1 0.02
24 14 0.25
ACGTcount: A:0.55, C:0.09, G:0.24, T:0.12
Consensus pattern (21 bp):
AAAAAGAGAAGTAACTTAGAC
Found at i:26676346 original size:40 final size:40
Alignment explanation
Indices: 26676302--26676411 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
26676292 TTCACAATTT
* *
26676302 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
26676342 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
26676382 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
26676412 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:26683886 original size:40 final size:40
Alignment explanation
Indices: 26683842--26683951 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
26683832 TTCACAATTT
* *
26683842 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
26683882 GCACAATTGCCTTCGGGTCTTAACCCGGATGTAATTACCA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
* * *
26683922 GCATAAATGTCTTCGGGACTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
26683952 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATGTAATCACCA
Found at i:26687798 original size:47 final size:47
Alignment explanation
Indices: 26687744--26687867 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 47
26687734 GTGCAAATAA
* *
26687744 TACCTTGATTTGGCTACGGGGCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGAAGT
* * *
26687791 TACCTTGATTTGGCTACTGGCCATGGTATAGGTATTCCGAGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGAAGT
26687838 TACCTTGATTTGGCTACGGGCCATGGTATA
1 TACCTTGATTTGGCTACGGGCCATGGTATA
26687868 AGTACTTAGC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGAAGT
Done.