Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 89 of 433
Found at i:26688580 original size:22 final size:23
Alignment explanation
Indices: 26688541--26688593 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
26688531 TATAAGTTTT
* *
26688541 TGAATA-GGTATTTGGCTTGAAT
1 TGAATATGGAATTTGGCTTGAAA
*
26688563 TGATTATGGAATTT-GCTTGAAA
1 TGAATATGGAATTTGGCTTGAAA
26688585 TGAATATGG
1 TGAATATGG
26688594 TATGAATTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 20 0.77
23 6 0.23
ACGTcount: A:0.30, C:0.04, G:0.26, T:0.40
Consensus pattern (23 bp):
TGAATATGGAATTTGGCTTGAAA
Found at i:26690136 original size:34 final size:34
Alignment explanation
Indices: 26690093--26690161 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
26690083 AGCTCCAGTG
*
26690093 TTAGTACAGATAGAATCGGGTAAAGAATTTGTGA
1 TTAGTACAGACAGAATCGGGTAAAGAATTTGTGA
26690127 TTAGTACAGACAGAATCGGGTAAAGAATTTGTGA
1 TTAGTACAGACAGAATCGGGTAAAGAATTTGTGA
26690161 T
1 T
26690162 CTATAGTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (34 bp):
TTAGTACAGACAGAATCGGGTAAAGAATTTGTGA
Found at i:26695020 original size:2 final size:2
Alignment explanation
Indices: 26695013--26695044 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26695003 ACATTCGGCA
26695013 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26695045 TAATGACTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26695268 original size:20 final size:19
Alignment explanation
Indices: 26695245--26695291 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 19
26695235 TATTTCTTAA
26695245 AATTAAAACTCAATTCTACC
1 AATTAAAACTCAATTC-ACC
* *
26695265 AATTCAAAACTCCATTCAGC
1 AATT-AAAACTCAATTCACC
26695285 AATTAAA
1 AATTAAA
26695292 CATGAATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.47, C:0.23, G:0.02, T:0.28
Consensus pattern (19 bp):
AATTAAAACTCAATTCACC
Found at i:26698621 original size:26 final size:25
Alignment explanation
Indices: 26698578--26698684 Score: 169
Period size: 26 Copynumber: 4.2 Consensus size: 25
26698568 TGGTACAAAT
*
26698578 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATATTCCA
26698603 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATATTCCA
26698629 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAAT-GGTTAGGTAAATATTCCA
*
26698655 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATATTCCA
26698681 TGAT
1 TGAT
26698685 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
25 11 0.14
26 64 0.83
27 2 0.03
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATATTCCA
Found at i:26700356 original size:27 final size:27
Alignment explanation
Indices: 26700290--26700420 Score: 189
Period size: 27 Copynumber: 4.9 Consensus size: 27
26700280 AGGAAGCGTC
*
26700290 CTGGTGGCTATGCCACA-ATTATCTG-T
1 CTGGTGGCTCTGCCACATA-TATCTGTT
26700316 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
* *
26700343 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGTT
26700370 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
26700397 CTGGTGGCTCTGCCACA-ATATCTG
1 CTGGTGGCTCTGCCACATATATCTG
26700421 GCAGCCTCGC
Statistics
Matches: 96, Mismatches: 5, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
26 31 0.32
27 63 0.66
28 2 0.02
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:26700392 original size:54 final size:52
Alignment explanation
Indices: 26700290--26700420 Score: 217
Period size: 54 Copynumber: 2.5 Consensus size: 52
26700280 AGGAAGCGTC
26700290 CTGGTGGCTATGCCACAATTATCTGTCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGTCTGGTGGCTCTGCCACATATATCTGTT
26700343 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTG-TCTGGTGGCTCTGCCACATATATCTGTT
* *
26700397 CTGGTGGCTCTGCCACAATATCTG
1 CTGGTGGCTATGCCACATTATCTG
26700421 GCAGCCTCGC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
53 31 0.42
54 43 0.58
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (52 bp):
CTGGTGGCTATGCCACATTATCTGTCTGGTGGCTCTGCCACATATATCTGTT
Found at i:26705556 original size:40 final size:40
Alignment explanation
Indices: 26705500--26705667 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
26705490 CAATTGAATG
* *
26705500 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
26705541 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
26705580 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
26705620 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
26705660 ATATCCGG
1 ATATCCGG
26705668 TTGTATCTGA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:26705633 original size:80 final size:79
Alignment explanation
Indices: 26705500--26705667 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
26705490 CAATTGAATG
* *
26705500 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
26705565 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
26705580 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
26705644 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
26705660 ATATCCGG
1 ATATCCGG
26705668 TTGTATCTGA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:26713564 original size:40 final size:40
Alignment explanation
Indices: 26713508--26713675 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
26713498 CAATTGAATG
* *
26713508 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
26713549 -TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
26713588 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
26713628 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
26713668 ATATCCGG
1 ATATCCGG
26713676 TTGTATCCGA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:26713641 original size:80 final size:79
Alignment explanation
Indices: 26713508--26713675 Score: 239
Period size: 80 Copynumber: 2.1 Consensus size: 79
26713498 CAATTGAATG
* *
26713508 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
26713573 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
26713588 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
26713652 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
26713668 ATATCCGG
1 ATATCCGG
26713676 TTGTATCCGA
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 2 0.03
80 76 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:26717629 original size:40 final size:40
Alignment explanation
Indices: 26717572--26717757 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
26717562 TCGAATGATG
* * * *
26717572 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
26717612 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26717652 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
** *
26717692 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
26717733 -CCGGGCTATGTCCCGAAGGTATTTG
1 TCCGGACTAAGTCCCGAAGGCATTTG
26717758 AACGAGTAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26719283 original size:44 final size:44
Alignment explanation
Indices: 26719230--26719760 Score: 278
Period size: 44 Copynumber: 11.8 Consensus size: 44
26719220 AATCTAATCA
* *
26719230 CCCTAAAGTTACAGTGGAG-AGAGATGAAGCTACAAATCTTATCT
1 CCCTAAAGTTGCAGTGGAGCA-AGATGAAGCTACAAATCTTATAT
*
26719274 CCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATAT
1 CCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATAT
* * * * *
26719318 CCCTGAAGTTGCAGTGGATC-GGATTGAAGCTTC-AAT-TTCTAT
1 CCCTAAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCTTATAT
* * * * * * *
26719360 ACCCTTGAAGTTGTAGTGGGTTGGAATGAAACT-ACGATGACAAATCTTATCT
1 -CCC-TAAAGTTGCAGT-GG-AGCAA-G--A-TGAAGCT-ACAAATCTTATAT
* * * *
26719412 CCCTAAAGTTGTAGTGGGGCAAGATGAAG-TGACGAATCCTATAT
1 CCCTAAAGTTGCAGTGGAGCAAGATGAAGCT-ACAAATCTTATAT
* *
26719456 CCTTAAAGTTGCAGTGGATCAA-ATTGAAGCTA-AAATCTCTATA-
1 CCCTAAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCT-TATAT
* * * ** * * * * ** *
26719499 CCCTTGAATTTGTAGTAGGTTGGAATAAAATTACGATGGTAAATCTTATCT
1 CCC-T-AA--AGTTGCA-G-TGGAGCAAGATGAAGCT-ACAAATCTTATAT
* * * * *
26719550 CCCTGAAGTTGCAGTGGAG-TAGATTGCAGTTACAAATCTTATCT
1 CCCTAAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCTTATAT
* * *
26719594 CCCTAAACTTGCAGTGGAGCAA-ATTGAAGATACAAATCTTATAC
1 CCCTAAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCTTATAT
* * *
26719638 CCCTAAAGTTGCAGTCGAAC-AGATTGAAGCTACAAATCTTATCT
1 CCCTAAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCTTATAT
* * * *
26719682 CCCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAACTCCTATAT
1 CCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATAT
* * * *
26719726 CCCTGAAGTTACAGTGGATC-AGATTGAAACTACAA
1 CCCTAAAGTTGCAGTGGAGCAAGA-TGAAGCTACAA
26719761 TTTTTATACC
Statistics
Matches: 375, Mismatches: 80, Indels: 64
0.72 0.15 0.12
Matches are distributed among these distances:
42 5 0.01
43 19 0.05
44 262 0.70
45 20 0.05
46 1 0.00
47 9 0.02
48 5 0.01
49 16 0.04
50 19 0.05
51 15 0.04
52 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (44 bp):
CCCTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATAT
Found at i:26719389 original size:88 final size:89
Alignment explanation
Indices: 26719149--26719396 Score: 220
Period size: 88 Copynumber: 2.7 Consensus size: 89
26719139 TGTTACAGTT
* *
26719149 GTGGATCGGATTGAAGCTACAATTTTTATACCCTTGAAGTTGCAGTAGGTTGGAATGAAACTACG
1 GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTGGGTTGGAATGAAACTAC-
*
26719214 GTGGTGAATCTAATCACCCTAAAGTTACA
65 ---G-AAATCTAATCACCCTAAAGTTACA
** * * *** *
26719243 GTGGAGAGAGA-TGAAGCTACAA-ATCT-TATCTCCTTAAAGTTGCAGTGGAGCAAG-ATGAAGC
1 GTGGATCG-GATTGAAGCTACAATTTCTATA-C-CCTTGAAGTTGCAGTGG-GTTGGAATGAAAC
* * *
26719304 TAC-AAATCTTAT-ATCCCTGAAGTTGCA
62 TACGAAATCTAATCA-CCCTAAAGTTACA
* *
26719331 GTGGATCGGATTGAAGCTTCAATTTCTATACCCTTGAAGTTGTAGTGGGTTGGAATGAAACTACG
1 GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTGGGTTGGAATGAAACTACG
26719396 A
66 A
26719397 TGACAAATCT
Statistics
Matches: 120, Mismatches: 24, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
87 5 0.04
88 58 0.48
89 5 0.04
90 2 0.02
92 2 0.02
93 3 0.03
94 41 0.34
95 4 0.03
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (89 bp):
GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTGGGTTGGAATGAAACTACG
AAATCTAATCACCCTAAAGTTACA
Found at i:26719403 original size:138 final size:138
Alignment explanation
Indices: 26719261--26719848 Score: 564
Period size: 138 Copynumber: 4.3 Consensus size: 138
26719251 AGATGAAGCT
* * * *
26719261 ACAAATCTTATCTCCTTAAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCTTATATCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAG
** * * *
26719326 TTGCAGTGGATCGGATTGAAGCTTCAATTTCTATACCCTTGAAGTTGTAGTGGGTTGGAATGAAA
66 TTGCAGTGGATCAAATTGAAGCTACAATTTCTATACCCCTGAAGTTGTAGTGGGTTAGAATGAAA
26719391 CTACGATG
131 CTACGATG
* * * * *
26719399 ACAAATCTTATCTCCCTAAAGTTGTAGTGGGGCAAGATGAAG-TGACGAATCCTATATCCTTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCT-ACAAATCCTATATCCCTAAA
* * * * * * *
26719463 GTTGCAGTGGATCAAATTGAAGCTAAAATCTCTATACCCTTGAATTTGTAGTAGGTTGGAATAAA
65 GTTGCAGTGGATCAAATTGAAGCTACAATTTCTATACCCCTGAAGTTGTAGTGGGTTAGAATGAA
*
26719528 ATTACGATG
130 ACTACGATG
** * * * * *
26719537 GTAAATCTTATCTCCCTGAAGTTGCAGTGGAG-TAGATTGCAGTTACAAATCTTATCTCCCTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCCTATATCCCTAAA
* * * * * * * *** *
26719601 CTTGCAGTGGAGCAAATTGAAGATACAA-ATCTTATACCCCTAAAGTTGCAGTCGAACAGATTG-
65 GTTGCAGTGGATCAAATTGAAGCTACAATTTC-TATACCCCTGAAGTTGTAGTGGGTTAGAATGA
*
26719664 -A--A-GCT-
129 AACTACGATG
* * *
26719669 ACAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAAGATGAAGCTACAACTCCTATATCCCTGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAG
* * * * * *
26719734 TTACAGTGGATCAGATTGAAACTACAATTTTTATACCCCTGAGGTTGTAGTGGGTTAGAATGAAG
66 TTGCAGTGGATCAAATTGAAGCTACAATTTCTATACCCCTGAAGTTGTAGTGGGTTAGAATGAAA
** *
26719799 CTATAATA
131 CTACGATG
* * * * *
26719807 ACAAACCTTATCTCCTTGAAGTTGTAATAGAGCAAGATGAAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAG
26719849 TCGTGATACT
Statistics
Matches: 361, Mismatches: 77, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
132 95 0.26
133 6 0.02
134 1 0.00
136 2 0.01
137 7 0.02
138 249 0.69
139 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.29
Consensus pattern (138 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTACAAATCCTATATCCCTAAAG
TTGCAGTGGATCAAATTGAAGCTACAATTTCTATACCCCTGAAGTTGTAGTGGGTTAGAATGAAA
CTACGATG
Found at i:26719428 original size:94 final size:93
Alignment explanation
Indices: 26719149--26719428 Score: 254
Period size: 94 Copynumber: 3.0 Consensus size: 93
26719139 TGTTACAGTT
*
26719149 GTGGATCGGATTGAAGCTACAATTTTTATACCCTTGAAGTTGCAGTAGGTTGGAATGAAACTACG
1 GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGT-GGTTGGAATGAAACTACG
* *** * * *
26719214 GTGGTGAATCTAATCACCCTAAAGTTACA
65 ATGACAAATCTTATCTCCCTAAAGTTGCA
** * * * *
26719243 GTGGAGAGAGA-TGAAGCTACAA-ATCT-TATCTCCTTAAAGTTGCAGTGG-AGCAA-G--A-TG
1 GTGGATCG-GATTGAAGCTACAATTTCTATA-C-CCTTGAAGTTGCAGTGGTTGGAATGAAACT-
* * * *
26719300 AAGCT-ACAAATCTTATATCCCTGAAGTTGCA
62 ACGATGACAAATCTTATCTCCCTAAAGTTGCA
* *
26719331 GTGGATCGGATTGAAGCTTCAATTTCTATACCCTTGAAGTTGTAGTGGGTTGGAATGAAACTACG
1 GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGT-GGTTGGAATGAAACTACG
*
26719396 ATGACAAATCTTATCTCCCTAAAGTTGTA
65 ATGACAAATCTTATCTCCCTAAAGTTGCA
26719425 GTGG
1 GTGG
26719429 GGCAAGATGA
Statistics
Matches: 142, Mismatches: 30, Indels: 28
0.71 0.15 0.14
Matches are distributed among these distances:
87 2 0.01
88 48 0.34
89 10 0.07
90 5 0.04
91 2 0.01
92 5 0.04
93 9 0.06
94 59 0.42
95 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (93 bp):
GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTGGTTGGAATGAAACTACGA
TGACAAATCTTATCTCCCTAAAGTTGCA
Found at i:26719461 original size:182 final size:181
Alignment explanation
Indices: 26719149--26719502 Score: 482
Period size: 182 Copynumber: 2.0 Consensus size: 181
26719139 TGTTACAGTT
*
26719149 GTGGATCGGATTGAAGCTACAATTTTTATACCCTTGAAGTTGCAGTAGGTTGGAATGAAACTACG
1 GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTAGGTTGGAATGAAACTACG
* *** * *
26719214 GTGGTGAATCTAATCACCCTAAAGTTACAGTGGAGAGAGATGAAGCTACAAATCTTATCTCCTTA
66 ATGACAAATCTAATCACCCTAAAGTTACAGTGGAGAGAGATGAAGCTACAAATCCTATATCCTTA
26719279 AAGTTGCAGTGGAGCAAGA-TGAAGCTACAAATCT-TATATCCCTGAAGTTGCA
131 AAGTTGCAGTGGAGCAA-ATTGAAGCTA-AAATCTCTATA-CCCTGAAGTTGCA
* * *
26719331 GTGGATCGGATTGAAGCTTCAATTTCTATACCCTTGAAGTTGTAGTGGGTTGGAATGAAACTACG
1 GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTAGGTTGGAATGAAACTACG
* * ** * *
26719396 ATGACAAATCTTATCTCCCTAAAGTTGTAGTGGGGCA-AGATGAAG-TGACGAATCCTATATCCT
66 ATGACAAATCTAATCACCCTAAAGTTACAGTGGAG-AGAGATGAAGCT-ACAAATCCTATATCCT
*
26719459 TAAAGTTGCAGTGGATCAAATTGAAGCTAAAATCTCTATACCCT
129 TAAAGTTGCAGTGGAGCAAATTGAAGCTAAAATCTCTATACCCT
26719503 TGAATTTGTA
Statistics
Matches: 151, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
181 12 0.08
182 138 0.91
183 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (181 bp):
GTGGATCGGATTGAAGCTACAATTTCTATACCCTTGAAGTTGCAGTAGGTTGGAATGAAACTACG
ATGACAAATCTAATCACCCTAAAGTTACAGTGGAGAGAGATGAAGCTACAAATCCTATATCCTTA
AAGTTGCAGTGGAGCAAATTGAAGCTAAAATCTCTATACCCTGAAGTTGCA
Found at i:26719774 original size:44 final size:44
Alignment explanation
Indices: 26719539--26719786 Score: 218
Period size: 44 Copynumber: 5.6 Consensus size: 44
26719529 TTACGATGGT
* * **
26719539 AAATCTTAT-CTCCCTGAAGTTGCAGTGGAGTAGATTGCAGTTAC
1 AAATCTTATAC-CCCTGAAGTTGCAGTGGAGCAGATTGAAACTAC
* * *
26719583 AAATCTTAT-CTCCCTAAACTTGCAGTGGAGCAAATTGAAGA-TAC
1 AAATCTTATAC-CCCTGAAGTTGCAGTGGAGCAGATTGAA-ACTAC
* * * *
26719627 AAATCTTATACCCCTAAAGTTGCAGTCGAACAGATTGAAGCTAC
1 AAATCTTATACCCCTGAAGTTGCAGTGGAGCAGATTGAAACTAC
* *
26719671 AAATCTTAT-CTCCCTGAAGTTGCAGTAGAGCAAGA-TGAAGCTAC
1 AAATCTTATAC-CCCTGAAGTTGCAGTGGAGC-AGATTGAAACTAC
* * * * *
26719715 AACTCCTATATCCCTGAAGTTACAGTGGATCAGATTGAAACTAC
1 AAATCTTATACCCCTGAAGTTGCAGTGGAGCAGATTGAAACTAC
* * * *
26719759 AATTTTTATACCCCTGAGGTTGTAGTGG
1 AAATCTTATACCCCTGAAGTTGCAGTGG
26719787 GTTAGAATGA
Statistics
Matches: 169, Mismatches: 28, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
43 4 0.02
44 161 0.95
45 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (44 bp):
AAATCTTATACCCCTGAAGTTGCAGTGGAGCAGATTGAAACTAC
Found at i:26720732 original size:115 final size:116
Alignment explanation
Indices: 26720504--26720719 Score: 355
Period size: 115 Copynumber: 1.9 Consensus size: 116
26720494 TAACATCCTG
26720504 ATTTTGGGCTTAGTCAGAACAGTGGTTTCGGGACCACAAATTCGATGAAAAAAATTTCATTTTTA
1 ATTTTGGGCTTAGTCAGAACAGTGGTTTCGGGACCACAAATTCGATGAAAAAAATTTCATTTTTA
* *
26720569 TTATATTTTTATGGTCTACGATTTCACGGAATGATTCCGTAAAAATTTCTA
66 TTATATTTTTATGGTCTAAGATTTCACAGAATGATTCCGTAAAAATTTCTA
* *
26720620 ATTTTGGGCTTAGT-GGAACAGTGGTTTCGGGACCACAAA-TCTGATGAGAAAAATTTCATTTTT
1 ATTTTGGGCTTAGTCAGAACAGTGGTTTCGGGACCACAAATTC-GATGAAAAAAATTTCATTTTT
* *
26720683 ATTTTATTTTTATGGTCTAAGATTTTACAGAATGATT
65 ATTATATTTTTATGGTCTAAGATTTCACAGAATGATT
26720720 TCTTGAAAAT
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
114 2 0.02
115 77 0.83
116 14 0.15
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (116 bp):
ATTTTGGGCTTAGTCAGAACAGTGGTTTCGGGACCACAAATTCGATGAAAAAAATTTCATTTTTA
TTATATTTTTATGGTCTAAGATTTCACAGAATGATTCCGTAAAAATTTCTA
Found at i:26721902 original size:49 final size:49
Alignment explanation
Indices: 26721825--26722054 Score: 207
Period size: 49 Copynumber: 4.7 Consensus size: 49
26721815 TCTATTGTGA
* **
26721825 GGTCGCGTGTGTAGTACTAAGTATAGGCTACTACGTGTACCAGATAATT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
26721874 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCGGCTAACT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * **
26721923 --TCGATCATGTCTGTAGTACTAAGTGGAGGCTACTACGTGTATCAGATGGTT
1 GGTCG--CATG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
26721974 AG-CTCACGTGGTAGTACTAAGTGTAGGCTACTACGTGCAAC-GAATAATT
1 GGTCGCATGT-GTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATT
*
26722023 GGTTGCATGTGTAGTACTAAGTGCAGGCTACT
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACT
26722055 GTGCATACCA
Statistics
Matches: 143, Mismatches: 29, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
47 3 0.02
48 2 0.01
49 99 0.69
50 7 0.05
51 31 0.22
52 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:26722032 original size:100 final size:98
Alignment explanation
Indices: 26721832--26722054 Score: 234
Period size: 100 Copynumber: 2.3 Consensus size: 98
26721822 TGAGGTCGCG
** * *
26721832 TGTGTAGTACTAAGTATAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGCTCACATGTGTAGTACTAAGTG
* * * **
26721897 CAGGCTACTATGCGTACCGGCTAACTTCGATCA
66 CAGGCTACTACGCGCAACGAATAACTTCGATCA
* * ** *
26721930 TGTCTGTAGTACTAAGTGGAGGCTACTACGTGTATCAGATGGTTAGCTCACGTG-GTAGTACTAA
1 TG--TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GCTCACATGTGTAGTACTAA
* * * *
26721994 GTGTAGGCTACTACGTGCAACGAATAA-TTGGTTGCA
63 GTGCAGGCTACTACGCGCAACGAATAACTTCGAT-CA
26722030 TGTGTAGTACTAAGTGCAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
26722055 GTGCATACCA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
98 24 0.23
99 4 0.04
100 69 0.67
101 6 0.06
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (98 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGCTCACATGTGTAGTACTAAGTG
CAGGCTACTACGCGCAACGAATAACTTCGATCA
Found at i:26724871 original size:15 final size:15
Alignment explanation
Indices: 26724842--26724886 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
26724832 AGTGCTGTAA
26724842 ATGGTATTTCCTTATC
1 ATGG-ATTTCCTTATC
*
26724858 ATGGATTTCTTTATC
1 ATGGATTTCCTTATC
*
26724873 TTGGATTTCCTTAT
1 ATGGATTTCCTTAT
26724887 TCTGGGCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (15 bp):
ATGGATTTCCTTATC
Found at i:26727476 original size:51 final size:49
Alignment explanation
Indices: 26727346--26727577 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
26727336 TCTATTGTGA
* *
26727346 GGTCATGTGTGTAGTGCTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
26727395 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA--TT
* * * **
26727446 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
26727495 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
26727545 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
26727578 TGCGTACTAG
Statistics
Matches: 152, Mismatches: 28, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 71 0.47
50 41 0.27
51 40 0.26
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:26727623 original size:150 final size:150
Alignment explanation
Indices: 26727345--26727623 Score: 418
Period size: 150 Copynumber: 1.9 Consensus size: 150
26727335 ATCTATTGTG
*
26727345 AGGTCATGTGTGTAGTGCTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * * * *
26727410 ACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAAGTCCAGGCT
26727475 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* *
26727495 AGGTCATGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACTGGATAATTGGTCGCATGTGTAGT
1 AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
* * * *
26727560 ACTAAGTGCAGGCTACTATGCGTACTAGATAGCTTTGGCTACAAGTGTG-A-AAATATGTCCAGG
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTT-GAT-CAAGTGTGTAGAAATAAGTCCAGG
26727623 C
129 C
26727624 AACTGAGTAT
Statistics
Matches: 115, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
150 105 0.91
151 3 0.03
152 7 0.06
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (150 bp):
AGGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTTGATCAAGTGTGTAGAAATAAGTCCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:26732953 original size:16 final size:16
Alignment explanation
Indices: 26732932--26732974 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
26732922 GTAGATCGGC
*
26732932 AAAAGCTGAAATGCCG
1 AAAAGCCGAAATGCCG
26732948 AAAAGCCGAAATGCCG
1 AAAAGCCGAAATGCCG
26732964 AAAAGCCGAAA
1 AAAAGCCGAAA
26732975 GTTTGGCTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.49, C:0.21, G:0.23, T:0.07
Consensus pattern (16 bp):
AAAAGCCGAAATGCCG
Found at i:26732955 original size:8 final size:8
Alignment explanation
Indices: 26732932--26732974 Score: 59
Period size: 8 Copynumber: 5.4 Consensus size: 8
26732922 GTAGATCGGC
*
26732932 AAAAGCTG
1 AAAAGCCG
*
26732940 AAATGCCG
1 AAAAGCCG
26732948 AAAAGCCG
1 AAAAGCCG
*
26732956 AAATGCCG
1 AAAAGCCG
26732964 AAAAGCCG
1 AAAAGCCG
26732972 AAA
1 AAA
26732975 GTTTGGCTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.49, C:0.21, G:0.23, T:0.07
Consensus pattern (8 bp):
AAAAGCCG
Found at i:26733267 original size:29 final size:29
Alignment explanation
Indices: 26733193--26733337 Score: 127
Period size: 29 Copynumber: 5.1 Consensus size: 29
26733183 TGAATATAAA
* * *
26733193 GTGATTTGGGTCGGATGGGCCATATAAAT
1 GTGAATTGGGTCTGATGGGCCATATGAAT
* * * *
26733222 GAG-ATTGGGCCTAATGGGCCATACGAAT
1 GTGAATTGGGTCTGATGGGCCATATGAAT
* *
26733250 GTGAATTGGGTCTGATGGGGCATATGAAC
1 GTGAATTGGGTCTGATGGGCCATATGAAT
*
26733279 GTGAATTGGG-CTGGATGGGCCATATAAAT
1 GTGAATTGGGTCT-GATGGGCCATATGAAT
* * *
26733308 GAG-ATTGGGCCT-AGTGGGCCATATGCAT
1 GTGAATTGGGTCTGA-TGGGCCATATGAAT
26733336 GT
1 GT
26733338 ATGTAGGGGT
Statistics
Matches: 92, Mismatches: 20, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
27 1 0.01
28 42 0.46
29 49 0.53
ACGTcount: A:0.25, C:0.13, G:0.35, T:0.27
Consensus pattern (29 bp):
GTGAATTGGGTCTGATGGGCCATATGAAT
Found at i:26740493 original size:40 final size:40
Alignment explanation
Indices: 26740448--26740614 Score: 239
Period size: 40 Copynumber: 4.2 Consensus size: 40
26740438 TTCGAATGAT
26740448 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAA
26740488 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAA
* * *
26740528 ATCTGGGTTAATT-CTCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCT-GAAGGCATTTGTGCGAGTTACTAA
* * * *
26740568 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTA-A
26740609 A-CCGGG
1 ATCCGGG
26740615 CTATGTCCCG
Statistics
Matches: 114, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.02
40 109 0.96
41 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (40 bp):
ATCCGGGTTAATTCCTGAAGGCATTTGTGCGAGTTACTAA
Found at i:26744593 original size:29 final size:29
Alignment explanation
Indices: 26744560--26744662 Score: 125
Period size: 29 Copynumber: 3.6 Consensus size: 29
26744550 GTGACGAGAT
26744560 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
26744589 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* ** * * ***
26744618 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
26744647 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
26744663 GGCTTAAATT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.22, C:0.17, G:0.36, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:26751454 original size:40 final size:40
Alignment explanation
Indices: 26751388--26751554 Score: 237
Period size: 40 Copynumber: 4.2 Consensus size: 40
26751378 TTCGAATGAT
* *
26751388 ATCCGAGTTAATTCCCGAAGGAATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
*
26751428 ATTCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
26751468 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTGCCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
26751508 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
26751549 A-CCGGG
1 ATCCGGG
26751555 CTATGTCCTG
Statistics
Matches: 113, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 111 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:26751592 original size:80 final size:80
Alignment explanation
Indices: 26751426--26751597 Score: 188
Period size: 80 Copynumber: 2.2 Consensus size: 80
26751416 GCGAGTTACT
* * * * * *
26751426 AAATTCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCA
1 AAATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACA
* * *
26751491 ATTGTGCGAGTTGCC
66 ATCGAGCGAGTAGCC
*
26751506 AAATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCTGAAGA
1 AAATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAGA
* *
26751569 CAATCGAGTGAGTAGCT
64 CAATCGAGCGAGTAGCC
*
26751586 ATATCC-GGTTAA
1 AAATCCGGGTTAA
26751598 ATTTCGAAGG
Statistics
Matches: 77, Mismatches: 13, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
79 8 0.10
80 67 0.87
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (80 bp):
AAATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACA
ATCGAGCGAGTAGCC
Found at i:26756929 original size:25 final size:25
Alignment explanation
Indices: 26756895--26756945 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26756885 CTCCGCCTTT
26756895 TGAAGTTATGTGCGATGCAAGCGAC
1 TGAAGTTATGTGCGATGCAAGCGAC
26756920 TGAAGTTATGTGCGATGCAAGCGAC
1 TGAAGTTATGTGCGATGCAAGCGAC
26756945 T
1 T
26756946 TTCCTGTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (25 bp):
TGAAGTTATGTGCGATGCAAGCGAC
Found at i:26758069 original size:79 final size:80
Alignment explanation
Indices: 26757922--26758073 Score: 279
Period size: 79 Copynumber: 1.9 Consensus size: 80
26757912 GCCTGCTGTG
* *
26757922 GCACACCAAAGGCATTAATTAGTGATCAGGGTACACACTTTCATTGCAACCAAGTGGCAGCCATA
1 GCACACCAAAGGCATTAATTAGTGATCAGGGTACACACTTTCACTGCAACCAAGTGGCAGCCACA
26757987 TTGAAGAGCGCTTTA
66 TTGAAGAGCGCTTTA
26758002 GCACACCAAAGGCATTAATTAGTGATCA-GGTACACACTTTCACTGCAACCAAGTGGCAGCCACA
1 GCACACCAAAGGCATTAATTAGTGATCAGGGTACACACTTTCACTGCAACCAAGTGGCAGCCACA
26758066 TTGAAGAG
66 TTGAAGAG
26758074 ATATGAGTTA
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
79 42 0.60
80 28 0.40
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.22
Consensus pattern (80 bp):
GCACACCAAAGGCATTAATTAGTGATCAGGGTACACACTTTCACTGCAACCAAGTGGCAGCCACA
TTGAAGAGCGCTTTA
Found at i:26781530 original size:47 final size:47
Alignment explanation
Indices: 26781452--26781676 Score: 142
Period size: 47 Copynumber: 4.8 Consensus size: 47
26781442 GGGTAAGGTA
* * *
26781452 CCGATGCCTTGTCCTAGACACGGTCTTACACTAGCTCATATCTCAAG
1 CCGAAGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAG
* *
26781499 TCGAAGCCATGTCCTAGACATGGTCTTACACT-GACT-ATCATCTCGTAG
1 CCGAAGCCATGTCCTAGACATGGTCTTACACTAG-CTCAT-ATCTC-AAG
** * * * * * *** *
26781547 CCGAA-AAATGTCCCAGACAT-GTCTTATATTGGCTTACGCCTCGAGG
1 CCGAAGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTC-AAG
* * *
26781593 CTGATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCGT-T-TCAATG
1 CCGAAGCCATGTCCTAGACATGGTCTTACACTAG--CTCATATCTCAA-G
* *
26781639 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA
1 CCGAAGCCATGTCCTAGACATGGTCTTACACTAGCTCA
26781677 CACAAATGAC
Statistics
Matches: 136, Mismatches: 31, Indels: 23
0.72 0.16 0.12
Matches are distributed among these distances:
45 1 0.01
46 53 0.39
47 62 0.46
48 20 0.15
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
CCGAAGCCATGTCCTAGACATGGTCTTACACTAGCTCATATCTCAAG
Found at i:26786721 original size:39 final size:40
Alignment explanation
Indices: 26786591--26786769 Score: 215
Period size: 40 Copynumber: 4.5 Consensus size: 40
26786581 ATGATGTCCA
* * *
26786591 GGCTAAGTCCCGAAAGC-TTTGTGCTAAGTGACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* *
26786631 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
26786671 GGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
26786709 GGTTAGGTCCCGAAGGCATTTGTACGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
26786749 GGCTATGTCCCGAAGGCATTT
1 GGCTAAGTCCCGAAGGCATTT
26786770 TTAAAATGAA
Statistics
Matches: 121, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
38 25 0.21
39 19 0.16
40 67 0.55
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:26786722 original size:78 final size:80
Alignment explanation
Indices: 26786591--26786768 Score: 220
Period size: 78 Copynumber: 2.2 Consensus size: 80
26786581 ATGATGTCCA
* * *
26786591 GGCTAAGTCCCGAAAGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTAC
*
26786656 GAGTTACTA-ATTCCG
66 GAGTTACTATA-ACCG
* * * * *
26786671 GGCTAAG-CCCGAAGGCATTGTGC-GAGTTACTAAATCCGG-GTTAGGTCCCGAAGGCATTTGTA
1 GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTA
26786733 CGAGTTACTATAACCG
65 CGAGTTACTATAACCG
*
26786749 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
26786769 TTTAAAATGA
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
77 4 0.05
78 47 0.55
79 27 0.32
80 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTAC
GAGTTACTATAACCG
Found at i:26793370 original size:40 final size:40
Alignment explanation
Indices: 26793296--26793475 Score: 226
Period size: 40 Copynumber: 4.5 Consensus size: 40
26793286 AATGATGTCT
*
26793296 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTAAATCCG
* * *
26793336 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
*
26793376 GGCTAAG-CCCGAAGGCA-TTGTGCAAGTTACTAAATCTG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
* *
26793414 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTA-AATCCG
*
26793454 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
26793476 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 24 0.20
39 19 0.16
40 68 0.56
41 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTAAATCCG
Found at i:26793429 original size:78 final size:80
Alignment explanation
Indices: 26793296--26793473 Score: 247
Period size: 78 Copynumber: 2.2 Consensus size: 80
26793286 AATGATGTCT
*
26793296 GGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
*
26793361 GAGTTACTA-ATTCCG
66 GAGTTACTATA-ACCG
* * **
26793376 GGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAATCTGGGTTAAG-TCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTG
26793438 CGAGTTACTATAACCG
65 CGAGTTACTATAACCG
*
26793454 GGCTATGTCCCGAAGGCATT
1 GGCTAAGTCCCGAAGGCATT
26793474 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
77 1 0.01
78 52 0.59
79 28 0.32
80 7 0.08
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTGTGC
GAGTTACTATAACCG
Found at i:26817263 original size:29 final size:28
Alignment explanation
Indices: 26817229--26817331 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
26817219 TACTCAATCA
*
26817229 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
26817258 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
26817287 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
26817316 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
26817332 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:26825295 original size:28 final size:29
Alignment explanation
Indices: 26825227--26825298 Score: 92
Period size: 28 Copynumber: 2.5 Consensus size: 29
26825217 TACTCAATCA
* * *
26825227 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAAGATCCAAACC
* *
26825256 CGCACACATAGTGCCATAAG-TCCAAACT
1 CGCACACTTAGTGCCATAAGATCCAAACC
26825284 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
26825299 GAAGCAAACT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATAAGATCCAAACC
Found at i:26828931 original size:29 final size:28
Alignment explanation
Indices: 26828897--26828999 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
26828887 TACTCAATCA
*
26828897 CGCACACTTAGTGCCATATGATTCAAGCC
1 CGCACACTTAGTGCCATAT-ATTCAAGCT
* * *
26828926 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATA-TTCAAGCT
* *
26828955 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCATATATT-CAAGCT
*
26828984 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
26829000 ATCTCGTCAC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCATATATTCAAGCT
Found at i:26836926 original size:29 final size:29
Alignment explanation
Indices: 26836892--26836964 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 29
26836882 TACTCAATCA
* *
26836892 CGCACACTTAGTGCCATAT-GATTCAAGCC
1 CGCACACTTAGTGCCATATAG-TCCAAACC
* *
26836921 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCATATAGTCCAAACC
26836950 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
26836965 GAAGCAAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
29 37 0.97
30 1 0.03
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATAGTCCAAACC
Found at i:26850698 original size:12 final size:11
Alignment explanation
Indices: 26850676--26850721 Score: 51
Period size: 12 Copynumber: 4.3 Consensus size: 11
26850666 AAGTAATTTC
*
26850676 AAAATATAAAT
1 AAAATAAAAAT
26850687 AAAGATAAAAAT
1 AAA-ATAAAAAT
26850699 AAAAT-AAAA-
1 AAAATAAAAAT
*
26850708 AAATTAAAAAT
1 AAAATAAAAAT
26850719 AAA
1 AAA
26850722 TAATAGGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 4 0.13
10 8 0.27
11 8 0.27
12 10 0.33
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:26858958 original size:13 final size:13
Alignment explanation
Indices: 26858940--26858969 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26858930 CTGACTTGTG
26858940 CACACGACCATGC
1 CACACGACCATGC
*
26858953 CACACGGCCATGC
1 CACACGACCATGC
26858966 CACA
1 CACA
26858970 TGCCCGTGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.47, G:0.17, T:0.07
Consensus pattern (13 bp):
CACACGACCATGC
Found at i:26866507 original size:18 final size:18
Alignment explanation
Indices: 26866484--26866519 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26866474 ACAGCAGGGT
26866484 TAACAACCCCTATTAATA
1 TAACAACCCCTATTAATA
26866502 TAACAACCCCTATTAATA
1 TAACAACCCCTATTAATA
26866520 CTTATTCCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.28, G:0.00, T:0.28
Consensus pattern (18 bp):
TAACAACCCCTATTAATA
Found at i:26871162 original size:40 final size:40
Alignment explanation
Indices: 26871069--26871323 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
26871059 AAGCCAAGTA
* * *
26871069 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26871107 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26871147 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26871187 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26871227 CCTTCGGCACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
26871267 CCTTCAGGACTTAGCCTGGA-ACTAGTCACTAG--CAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26871305 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26871324 TTATCATCCG
Statistics
Matches: 193, Mismatches: 20, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
38 35 0.18
39 17 0.09
40 141 0.73
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26879220 original size:40 final size:40
Alignment explanation
Indices: 26879127--26879380 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
26879117 AAGCCAAGTA
* * *
26879127 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26879165 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26879205 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26879244 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26879284 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26879324 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAG--CAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26879362 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26879381 TTATCATCCG
Statistics
Matches: 199, Mismatches: 12, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
38 37 0.19
39 53 0.27
40 109 0.55
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26879259 original size:79 final size:78
Alignment explanation
Indices: 26879127--26879380 Score: 345
Period size: 79 Copynumber: 3.2 Consensus size: 78
26879117 AAGCCAAGTA
* * * *
26879127 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
26879190 TAACTCGCACCAATG
65 TAACTCGCA-CAATG
* *
26879205 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAAT
1 CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
26879270 AACTCGCACAAATG
66 AACTCGCAC-AATG
* *
26879284 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
* *
26879348 GTCACTAGCA-AATG
64 GTAACTCGCACAATG
26879362 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
26879381 TTATCATCCG
Statistics
Matches: 159, Mismatches: 12, Indels: 10
0.88 0.07 0.06
Matches are distributed among these distances:
78 44 0.28
79 73 0.46
80 42 0.26
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTCGCACAATG
Found at i:26880683 original size:12 final size:12
Alignment explanation
Indices: 26880666--26880694 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
26880656 AACATGAGAG
26880666 CTTTTTTTTTCT
1 CTTTTTTTTTCT
26880678 CTTTTTTTTTCT
1 CTTTTTTTTTCT
26880690 -TTTTT
1 CTTTTT
26880695 CATCATCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
CTTTTTTTTTCT
Found at i:26884597 original size:26 final size:27
Alignment explanation
Indices: 26884562--26884622 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
26884552 AATCATATAT
26884562 CACATAAGGGC-ATAATAGTCATTTTAC
1 CACATAAGGGCAAT-ATAGTCATTTTAC
26884589 CACAT-AGGGCAATATAGTCATTTTAC
1 CACATAAGGGCAATATAGTCATTTTAC
26884615 CACA-AAGG
1 CACATAAGG
26884623 TGTCTAGGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
26 25 0.78
27 7 0.22
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (27 bp):
CACATAAGGGCAATATAGTCATTTTAC
Found at i:26891014 original size:43 final size:43
Alignment explanation
Indices: 26890966--26891128 Score: 152
Period size: 43 Copynumber: 3.8 Consensus size: 43
26890956 ACCGAGATGT
* *
26890966 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGA
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
* * * * * *
26891009 GATTACGTGTAAAACCATGTATGGGACATTAGCATCGTTAAT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTGA
* * * *
26891052 GATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCG-ATATGT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TGA
* * *
26891095 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCAT
26891129 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 22, Indels: 7
0.77 0.18 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 84 0.88
44 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTGA
Found at i:26898105 original size:40 final size:40
Alignment explanation
Indices: 26898061--26898191 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
26898051 GCTACTCGTT
* * * *
26898061 CAAATACCTTCGGGACATAGCCCAG-TTATAGTAGCTCGGA
1 CAAATGCCTTCGGGACATAACCCAGATT-TAGTAACTCGCA
* *
26898101 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
* ** *
26898141 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCAGATTTAGTAACTCGCA
26898181 CAAATGCCTTC
1 CAAATGCCTTC
26898192 AGATCTTAGT
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 3 0.04
40 76 0.94
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCAGATTTAGTAACTCGCA
Found at i:26898197 original size:40 final size:40
Alignment explanation
Indices: 26898089--26898246 Score: 187
Period size: 40 Copynumber: 4.0 Consensus size: 40
26898079 AGCCCAGTTA
* * **
26898089 TAGTAGCTCGGACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATT
26898129 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* *
26898169 TAGTAACTCGCACAAATGCCTTCAGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
26898209 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
26898247 CATCATTCGA
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.03
40 92 0.88
41 10 0.10
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:26898206 original size:80 final size:80
Alignment explanation
Indices: 26898067--26898246 Score: 197
Period size: 80 Copynumber: 2.2 Consensus size: 80
26898057 CGTTCAAATA
* * * * * *
26898067 CCTTCGGGACATAGCCCAG-TTATAGTAGCTCGGACAAATGCCTTCGGGACTTAACCCGGATTTA
1 CCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGATATA
*
26898131 GTAAC-TCGCACAAATG
65 GTAACTTAGCACAAA-G
* **
26898147 CCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTC-AGATCTTAGTCCGGATAT
1 CCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGGATAT
*
26898210 AGTCACTTAGCACAAAG
64 AGTAACTTAGCACAAAG
26898227 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
26898247 CATCATTCGA
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
79 5 0.06
80 65 0.78
81 13 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGATATAG
TAACTTAGCACAAAG
Found at i:26900570 original size:40 final size:40
Alignment explanation
Indices: 26900519--26900612 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
26900509 CTCAGTACCA
* **
26900519 CACACTTAGTGCCACATATAGCCA-AAGCTAT-TCCAATTCG
1 CACACTAAGTGCCACATATAG-CAGAAGCTATCT-CAAAACG
* * *
26900559 CACACTAAGTGCTATATATAGTAGAAGCTATCTCAAAACG
1 CACACTAAGTGCCACATATAGCAGAAGCTATCTCAAAACG
26900599 CACACTAAGTGCCA
1 CACACTAAGTGCCA
26900613 ACACAGTTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 43 0.96
41 1 0.02
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.23
Consensus pattern (40 bp):
CACACTAAGTGCCACATATAGCAGAAGCTATCTCAAAACG
Found at i:26901083 original size:29 final size:29
Alignment explanation
Indices: 26901019--26901084 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
26901009 TTTTCATTTA
* *
26901019 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
26901048 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
26901076 TTTACTCAA
1 TTT-CTCAA
26901085 ATCACTTTAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:26906488 original size:28 final size:28
Alignment explanation
Indices: 26906423--26906523 Score: 123
Period size: 28 Copynumber: 3.5 Consensus size: 28
26906413 ATAGTGAATC
*
26906423 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
26906452 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * *
26906480 CGCACACTTAGTGCTGTATAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
26906510 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26906524 CAATCTTGTC
Statistics
Matches: 65, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
27 4 0.06
28 24 0.37
29 18 0.28
30 19 0.29
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26908228 original size:29 final size:29
Alignment explanation
Indices: 26908152--26908252 Score: 143
Period size: 28 Copynumber: 3.6 Consensus size: 29
26908142 CCTCCGAACT
** * *
26908152 CGCACACCCAGTGCCGTAT-TTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
26908180 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26908208 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26908237 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26908253 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 2 0.03
28 35 0.54
29 28 0.43
ACGTcount: A:0.25, C:0.34, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:26908271 original size:57 final size:56
Alignment explanation
Indices: 26908161--26908271 Score: 125
Period size: 57 Copynumber: 2.0 Consensus size: 56
26908151 TCGCACACCC
* ** * * *
26908161 AGTGCCGTATTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCACGCACACTT
1 AGTGCCATATTTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
* *
26908217 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATCTCGT-CACCATACACAC
1 AGTGCCATAT-TTTCCAGCACGCACACTTAGTGCCAATAT-GTCCACCACACACAC
26908272 GTATTGCCCG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
56 9 0.20
57 35 0.78
58 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.27
Consensus pattern (56 bp):
AGTGCCATATTTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
Found at i:26916175 original size:29 final size:29
Alignment explanation
Indices: 26916142--26916244 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
26916132 CCTCCGAACT
** * * *
26916142 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
26916171 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26916200 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26916229 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26916245 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 65 1.00
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:26924265 original size:29 final size:29
Alignment explanation
Indices: 26924164--26924265 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
26924154 ACCCTCGACT
** * * *
26924164 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
26924193 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26924221 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
26924250 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
26924266 ATCTCGTCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:26924284 original size:57 final size:57
Alignment explanation
Indices: 26924173--26924284 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 57
26924163 TCGCACACCC
* * ** * * *
26924173 AGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
* *
26924230 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATCTCGT-CACCATACACAC
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATAT-GTCCACCACACACAC
26924285 GTATTGCCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
57 44 0.98
58 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (57 bp):
AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATGTCCACCACACACACTT
Found at i:26932955 original size:40 final size:39
Alignment explanation
Indices: 26932796--26932957 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26932786 TGTGTATGAA
*
26932796 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26932835 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26932873 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26932912 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26932952 TGTGCG
1 TGTGCG
26932958 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 36 0.32
39 61 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26932973 original size:40 final size:39
Alignment explanation
Indices: 26932796--26932988 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
26932786 TGTGTATGAA
* *
26932796 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26932835 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAA-
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26932873 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26932912 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26932952 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
26932989 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 36 0.26
39 61 0.44
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26940540 original size:15 final size:16
Alignment explanation
Indices: 26940520--26940552 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26940510 ATATATTTTT
26940520 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
26940535 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
26940552 T
1 T
26940553 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:26940639 original size:22 final size:22
Alignment explanation
Indices: 26940600--26940658 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
26940590 GTTTTAAAAA
*
26940600 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
26940621 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
26940643 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
26940659 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:26940675 original size:26 final size:24
Alignment explanation
Indices: 26940629--26940688 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
26940619 ATTTGTTTTA
*
26940629 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
26940653 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
26940679 TTTTTTATTT
1 ATATTTATTT
26940689 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:26941589 original size:40 final size:39
Alignment explanation
Indices: 26941429--26941591 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
26941419 TGTGTATGAA
*
26941429 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
26941468 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26941507 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26941546 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
26941586 TGTGCG
1 TGTGCG
26941592 GGTTACCATA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26941607 original size:40 final size:39
Alignment explanation
Indices: 26941429--26941622 Score: 253
Period size: 39 Copynumber: 4.9 Consensus size: 39
26941419 TGTGTATGAA
* *
26941429 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
26941468 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
26941507 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
26941546 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
26941586 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
26941623 GTTTGAACGA
Statistics
Matches: 138, Mismatches: 16, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 97 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.22, G:0.32, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:26945645 original size:28 final size:28
Alignment explanation
Indices: 26945580--26945680 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
26945570 ATAGTGAATC
*
26945580 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
26945609 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26945637 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
26945667 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26945681 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26948966 original size:17 final size:17
Alignment explanation
Indices: 26948931--26948966 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26948921 ATTAATTCTA
*
26948931 TTTTAATTATTTATCTT
1 TTTTAATTATTTATATT
*
26948948 TTTTAATTATTTCTATT
1 TTTTAATTATTTATATT
26948965 TT
1 TT
26948967 CAATTTAGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAATTATTTATATT
Found at i:26952748 original size:2 final size:2
Alignment explanation
Indices: 26952741--26952779 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
26952731 AAGAAAGTAG
26952741 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26952780 TATCAACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:26959655 original size:13 final size:15
Alignment explanation
Indices: 26959637--26959668 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
26959627 TGTGAAGAAG
26959637 ATTA-TTTAAAA-TT
1 ATTATTTTAAAATTT
26959650 ATTATTTTAAAATTT
1 ATTATTTTAAAATTT
26959665 ATTA
1 ATTA
26959669 ATAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.24
14 7 0.41
15 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTATTTTAAAATTT
Found at i:26959678 original size:18 final size:18
Alignment explanation
Indices: 26959659--26959722 Score: 50
Period size: 18 Copynumber: 3.7 Consensus size: 18
26959649 TATTATTTTA
26959659 AAATT-TATTAATAAAAT
1 AAATTATATTAATAAAAT
*
26959676 AAAATTCA-ATT-ATTAAAT
1 -AAATT-ATATTAATAAAAT
26959694 -AATT-TATTAA-AATAAT
1 AAATTATATTAATAA-AAT
26959710 AAATTATATTAAT
1 AAATTATATTAAT
26959723 TATATTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 15
0.68 0.04 0.28
Matches are distributed among these distances:
15 4 0.11
16 8 0.22
17 4 0.11
18 17 0.47
19 3 0.08
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATTATATTAATAAAAT
Found at i:26959698 original size:34 final size:37
Alignment explanation
Indices: 26959660--26959740 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 37
26959650 ATTATTTTAA
26959660 AATTTATTAATAA-AATAAA-AT-TCAATTAT-TAAAT
1 AATTTATTAA-AATAATAAATATATCAATTATATAAAT
* *
26959694 AATTTATTAAAATAATAAATTATATTAATTATATTAAT
1 AATTTATTAAAATAATAAA-TATATCAATTATATAAAT
26959732 AATTTATTA
1 AATTTATTA
26959741 TATGACTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
33 2 0.05
34 16 0.40
36 2 0.05
37 7 0.17
38 13 0.32
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (37 bp):
AATTTATTAAAATAATAAATATATCAATTATATAAAT
Found at i:26959710 original size:16 final size:19
Alignment explanation
Indices: 26959686--26959740 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 19
26959676 AAAATTCAAT
26959686 TATTAAATAATTTATTAA-A
1 TATT-AATAATTTATTAATA
26959705 -A-TAATAAATTATATTAATTA
1 TATTAAT-AATT-TATTAA-TA
26959725 TATTAATAATTTATTA
1 TATTAATAATTTATTA
26959741 TATGACTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
16 3 0.10
17 5 0.17
18 7 0.23
20 6 0.20
21 5 0.17
22 4 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTAATAATTTATTAATA
Found at i:26992789 original size:18 final size:18
Alignment explanation
Indices: 26992766--26992817 Score: 70
Period size: 18 Copynumber: 2.8 Consensus size: 18
26992756 ATGACAAAGT
*
26992766 TGAGAAATGAATATGATA
1 TGAGAAATGAATATGAAA
26992784 TGAGAAATGAAATATGAAA
1 TGAGAAATG-AATATGAAA
26992803 TGATGAAATG-ATATG
1 TGA-GAAATGAATATG
26992818 TGAATTTTGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 14 0.45
19 11 0.35
20 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.23, T:0.27
Consensus pattern (18 bp):
TGAGAAATGAATATGAAA
Found at i:26992799 original size:19 final size:19
Alignment explanation
Indices: 26992766--26992813 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
26992756 ATGACAAAGT
*
26992766 TGAGAAATG-AATATGATA
1 TGAGAAATGAAATATGAAA
26992784 TGAGAAATGAAATATGAAA
1 TGAGAAATGAAATATGAAA
26992803 TGATGAAATGA
1 TGA-GAAATGA
26992814 TATGTGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 9 0.33
19 11 0.41
20 7 0.26
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.25
Consensus pattern (19 bp):
TGAGAAATGAAATATGAAA
Found at i:26994475 original size:43 final size:42
Alignment explanation
Indices: 26994369--26994486 Score: 121
Period size: 42 Copynumber: 2.8 Consensus size: 42
26994359 ACTACCATTT
** * * *
26994369 TGCTAAAGAACATGACTTTTAGCGGCTTTTTTAATAAAGCGC
1 TGCTAAAGAACATGACTTTTAGCGGCACTTTTCATAAAACAC
* * *
26994411 TGTTAAAGAACGTCACTTTTAGCGGCACTTTTCATACAAACAAC
1 TGCTAAAGAACATGACTTTTAGCGGCACTTTTCATA-AAAC-AC
* *
26994455 -GCTAAAGAACATGACCTTTAGCGGCGCTTTTC
1 TGCTAAAGAACATGACTTTTAGCGGCACTTTTC
26994487 TCAAAAACGC
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
42 30 0.49
43 30 0.49
44 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (42 bp):
TGCTAAAGAACATGACTTTTAGCGGCACTTTTCATAAAACAC
Found at i:26994502 original size:43 final size:42
Alignment explanation
Indices: 26994370--26994504 Score: 118
Period size: 43 Copynumber: 3.2 Consensus size: 42
26994360 CTACCATTTT
*
26994370 GCTAAAGAACATGACTTTTAGC-G-GCTTTT-TTAATAAAGCGC
1 GCTAAAGAACATGACTTTTAGCGGCGCTTTTCTCAA-AAA-CGC
* * * *
26994411 TGTTAAAGAACGTCACTTTTAGCGGCACTTTTCATACAAACAA--C
1 -GCTAAAGAACATGACTTTTAGCGGCGCTTTTC-T-CAAA-AACGC
*
26994455 GCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAAACGC
1 GCTAAAGAACATGACTTTTAGCGGCGCTTTTCTCAAAAACGC
26994497 AGCTAAAG
1 -GCTAAAG
26994505 GTCATGTTCT
Statistics
Matches: 74, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
40 2 0.03
41 4 0.05
42 21 0.28
43 35 0.47
44 6 0.08
46 2 0.03
47 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.27
Consensus pattern (42 bp):
GCTAAAGAACATGACTTTTAGCGGCGCTTTTCTCAAAAACGC
Found at i:26995319 original size:14 final size:14
Alignment explanation
Indices: 26995300--26995342 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
26995290 ACTAACGATG
26995300 AATTAAACCATTAT
1 AATTAAACCATTAT
26995314 AATTAAACCATTAT
1 AATTAAACCATTAT
*
26995328 GATTAAA-CATTAT
1 AATTAAACCATTAT
26995341 AA
1 AA
26995343 ATATATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 7 0.26
14 20 0.74
ACGTcount: A:0.51, C:0.12, G:0.02, T:0.35
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:26997381 original size:2 final size:2
Alignment explanation
Indices: 26997374--26997403 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
26997364 ACTAGAGAAA
26997374 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26997404 GCGTATGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26997972 original size:40 final size:40
Alignment explanation
Indices: 26997917--26998138 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
26997907 TATTCGAATG
* *
26997917 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
26997957 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
26997997 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
26998037 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
26998077 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
26998117 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26998139 TACTTGGGTT
Statistics
Matches: 169, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 153 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:27003987 original size:82 final size:81
Alignment explanation
Indices: 27003802--27004000 Score: 233
Period size: 82 Copynumber: 2.4 Consensus size: 81
27003792 CGATTGGATA
* * * *
27003802 AAAAATGCCACTATAGCTCAACCTTTTATGGCGTTTGGACAAAAACGCCACAATTGCTCAGTTTT
1 AAAAACGCCACTATTGCTCAACTTTTTGTGGCGTTTGGACAAAAACGCCACAATTGCTCAGTTTT
*
27003867 TAGTAGTGTTTGAAAC
66 TAGTAGCGTTTGAAAC
* * *
27003883 AAAAACACCACAATTGAC-CAACTTTTTGTGGCGTTTGGACCAAAAACGCCACTATTGCTCAGTT
1 AAAAACGCCACTATTG-CTCAACTTTTTGTGGCGTTTGGA-CAAAAACGCCACAATTGCTCAGTT
**
27003947 TTTAGT-GACGTTTG-GTC
64 TTTAGTAG-CGTTTGAAAC
* *
27003964 TAAAAGCGCCACTATTGCTCAACTTTTTGCGGCGTTT
1 -AAAAACGCCACTATTGCTCAACTTTTTGTGGCGTTT
27004001 TCTTACAAAC
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
81 34 0.34
82 65 0.66
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (81 bp):
AAAAACGCCACTATTGCTCAACTTTTTGTGGCGTTTGGACAAAAACGCCACAATTGCTCAGTTTT
TAGTAGCGTTTGAAAC
Found at i:27004000 original size:41 final size:41
Alignment explanation
Indices: 27003802--27004000 Score: 181
Period size: 41 Copynumber: 4.9 Consensus size: 41
27003792 CGATTGGATA
* * * *
27003802 AAAAATGCCACTATAGCTCAACCTTTTATGGCGTTTGGA-C
1 AAAAACGCCACTATTGCTCAACTTTTTGTGGCGTTTGGACC
* * * * * *
27003842 AAAAACGCCACAATTGCTC-AGTTTTTAGTAGTGTTTGAAAC
1 AAAAACGCCACTATTGCTCAACTTTTT-GTGGCGTTTGGACC
* *
27003883 AAAAACACCACAATTGAC-CAACTTTTTGTGGCGTTTGGACC
1 AAAAACGCCACTATTG-CTCAACTTTTTGTGGCGTTTGGACC
* * * *
27003924 AAAAACGCCACTATTGCTC-AGTTTTTAGTGACGTTTGGTCT
1 AAAAACGCCACTATTGCTCAACTTTTT-GTGGCGTTTGGACC
* *
27003965 AAAAGCGCCACTATTGCTCAACTTTTTGCGGCGTTT
1 AAAAACGCCACTATTGCTCAACTTTTTGTGGCGTTT
27004001 TCTTACAAAC
Statistics
Matches: 127, Mismatches: 25, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
39 5 0.04
40 31 0.24
41 78 0.61
42 13 0.10
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (41 bp):
AAAAACGCCACTATTGCTCAACTTTTTGTGGCGTTTGGACC
Found at i:27006165 original size:20 final size:21
Alignment explanation
Indices: 27006129--27006167 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
27006119 AACTAATCTT
27006129 AATTTCTATCAAATTCTCACA
1 AATTTCTATCAAATTCTCACA
*
27006150 AATTTC-ATCAATTTCTCA
1 AATTTCTATCAAATTCTCA
27006168 ACTATGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.36, C:0.23, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTTCTATCAAATTCTCACA
Found at i:27017481 original size:22 final size:22
Alignment explanation
Indices: 27017455--27017504 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
27017445 AACAATTAGA
27017455 CTTAAA-ATAAAGAA-ACTAAATT
1 CTTAAATATAAA-AATA-TAAATT
27017477 CTTAAATATAAAAATATAAATT
1 CTTAAATATAAAAATATAAATT
27017499 -TTAAAT
1 CTTAAAT
27017505 TTTAAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
21 6 0.23
22 14 0.54
23 6 0.23
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
CTTAAATATAAAAATATAAATT
Found at i:27019716 original size:11 final size:11
Alignment explanation
Indices: 27019700--27019745 Score: 65
Period size: 11 Copynumber: 4.1 Consensus size: 11
27019690 TATTGTAATC
27019700 AACATTAATAT
1 AACATTAATAT
27019711 AACATTAATAT
1 AACATTAATAT
27019722 AACATTAAATAT
1 AACATT-AATAT
* *
27019734 AATATTGATAT
1 AACATTAATAT
27019745 A
1 A
27019746 TTTCCAACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
11 22 0.69
12 10 0.31
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (11 bp):
AACATTAATAT
Found at i:27019732 original size:23 final size:22
Alignment explanation
Indices: 27019700--27019745 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
27019690 TATTGTAATC
27019700 AACATTAATATAACATTAATAT
1 AACATTAATATAACATTAATAT
* *
27019722 AACATTAAATATAATATTGATAT
1 AACATT-AATATAACATTAATAT
27019745 A
1 A
27019746 TTTCCAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (22 bp):
AACATTAATATAACATTAATAT
Found at i:27020001 original size:20 final size:19
Alignment explanation
Indices: 27019978--27020067 Score: 69
Period size: 20 Copynumber: 4.7 Consensus size: 19
27019968 GTTTAGAGTG
27019978 TAATTTTATTTTATAGTAAT
1 TAATTTTATTTTATAGT-AT
* * *
27019998 TAATTTTGTTTTTATTGTGT
1 TAATTTT-ATTTTATAGTAT
** *
27020018 T--TTAAAGTTTATAGT-T
1 TAATTTTATTTTATAGTAT
27020034 TAATTTTATTTTATAGGTAT
1 TAATTTTATTTTATA-GTAT
*
27020054 TAATTTTTTTTTAT
1 TAATTTTATTTTAT
27020068 CTTTTAAGAT
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
16 2 0.04
17 7 0.13
18 11 0.21
19 2 0.04
20 23 0.43
21 8 0.15
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (19 bp):
TAATTTTATTTTATAGTAT
Found at i:27020023 original size:56 final size:56
Alignment explanation
Indices: 27019947--27020067 Score: 201
Period size: 56 Copynumber: 2.2 Consensus size: 56
27019937 AATTTTACAA
27019947 TTGTTTTTATTGTGTTTTAAAGTTTAGAGTGTAATTTTATTTTATA-GTAATTAATT
1 TTGTTTTTATTGTGTTTTAAAGTTTAGAGTGTAATTTTATTTTATAGGT-ATTAATT
* *
27020003 TTGTTTTTATTGTGTTTTAAAGTTTATAGTTTAATTTTATTTTATAGGTATTAATT
1 TTGTTTTTATTGTGTTTTAAAGTTTAGAGTGTAATTTTATTTTATAGGTATTAATT
27020059 TT-TTTTTAT
1 TTGTTTTTAT
27020068 CTTTTAAGAT
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
55 7 0.11
56 53 0.85
57 2 0.03
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.63
Consensus pattern (56 bp):
TTGTTTTTATTGTGTTTTAAAGTTTAGAGTGTAATTTTATTTTATAGGTATTAATT
Found at i:27020041 original size:30 final size:29
Alignment explanation
Indices: 27019951--27020043 Score: 75
Period size: 30 Copynumber: 3.2 Consensus size: 29
27019941 TTACAATTGT
*
27019951 TTTTATTGTGTTTTAAAGTTTAGAGTGTAA
1 TTTTATTGTGTTTTAAAGTTTA-AGTTTAA
* * ** * **
27019981 TTTTATTTTATAGT-AA--TTAATTTTGT
1 TTTTATTGTGTTTTAAAGTTTAAGTTTAA
27020007 TTTTATTGTGTTTTAAAGTTTATAGTTTAA
1 TTTTATTGTGTTTTAAAGTTTA-AGTTTAA
27020037 TTTTATT
1 TTTTATT
27020044 TTATAGGTAT
Statistics
Matches: 44, Mismatches: 15, Indels: 8
0.66 0.22 0.12
Matches are distributed among these distances:
26 13 0.30
27 5 0.11
29 5 0.11
30 21 0.48
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (29 bp):
TTTTATTGTGTTTTAAAGTTTAAGTTTAA
Found at i:27022467 original size:39 final size:39
Alignment explanation
Indices: 27022386--27022548 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
27022376 TATGGTAACC
* *
27022386 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
27022426 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
27022465 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
27022504 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
27022543 CGCACA
1 CGCACA
27022549 TTCATACACA
Statistics
Matches: 114, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 97 0.85
40 17 0.15
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:27029085 original size:40 final size:40
Alignment explanation
Indices: 27029021--27029211 Score: 208
Period size: 39 Copynumber: 4.8 Consensus size: 40
27029011 GCTACTCGTT
* * * ***
27029021 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
27029061 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *** *
27029101 CAATTGCCTTCGGG-CTTAGCCCGGATATCATGGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* * *
27029140 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
27029179 CAATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
27029212 TTCGCACATT
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.66
40 45 0.34
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:27029138 original size:39 final size:39
Alignment explanation
Indices: 27029057--27029219 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
27029047 TATGGTAACC
* *
27029057 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
***
27029097 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATGGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
27029136 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
27029175 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
27029214 CGCACA
1 CGCACA
27029220 TTCATACACA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:27032832 original size:23 final size:22
Alignment explanation
Indices: 27032788--27032838 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
27032778 GAACAAATAT
27032788 AAATATAAATAATTATATAAAC
1 AAATATAAATAATTATATAAAC
27032810 AAATA-AAATAAATTAATATAAAC
1 AAATATAAAT-AATT-ATATAAAC
27032833 AAATAT
1 AAATAT
27032839 TTATATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 4 0.15
22 9 0.35
23 13 0.50
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (22 bp):
AAATATAAATAATTATATAAAC
Found at i:27036077 original size:46 final size:46
Alignment explanation
Indices: 27036024--27036199 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
27036014 TATTTGGGCA
27036024 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
27036070 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
27036115 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
27036163 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27036200 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:27036179 original size:93 final size:93
Alignment explanation
Indices: 27036020--27036192 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
27036010 GGGATATTTG
* *
27036020 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
27036085 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
27036113 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
27036178 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
27036193 CTTATGGGCG
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:27051691 original size:81 final size:81
Alignment explanation
Indices: 27051388--27051820 Score: 530
Period size: 82 Copynumber: 5.3 Consensus size: 81
27051378 TTCTCAGGAT
* * *
27051388 TAAATCCTGAAACAGGATTGTTTAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
1 TAAATCCCGAAACA-GATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
27051453 CTGTTAAATGGCGGTAA
65 CTGTTAAATGGCGGTAA
* * *
27051470 TAAATTCCGAAATAGAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
1 TAAATCCCGAAACAG-ATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
** *
27051535 CTGTTAAACAGCGGGAA
65 CTGTTAAATGGCGGTAA
* * *
27051552 TAAATCCCGAAACAAAATTATTTAATTAAATCTTGTTTGGAAACAAAATCAGAATCGAATAAAAT
1 TAAATCCCGAAAC-AGATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAAT
* *
27051617 CTATTAAATGGTGGTAA
65 CTGTTAAATGGCGGTAA
* * * *
27051634 TAAATCCTGAAACAGATTATTCAATT-AATTTTCTTTTGGAAACAAAATCAAAATCGAATAAAAC
1 TAAATCCCGAAACAGATTATTCAATTAAATCTT-GTTTGGAAACAAAATCAAAATCGAATAAAAT
* *
27051698 CTATTAAATGGTGGTAA
65 CTGTTAAATGGCGGTAA
** * * * *
27051715 TAAATCCCGAAACAGATTATTCAATTATTTCTGGTTTTGAAACAAAATCAAAATTG-ATAAATTC
1 TAAATCCCGAAACAGATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
* *
27051779 TGTTAAATAGAGAG-AA
66 TGTTAAATGGCG-GTAA
* *
27051795 TATATCCCAAAACAGATTATTCAATT
1 TAAATCCCGAAACAGATTATTCAATT
27051821 TTAATTTTTA
Statistics
Matches: 308, Mismatches: 38, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
80 46 0.15
81 103 0.33
82 158 0.51
83 1 0.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (81 bp):
TAAATCCCGAAACAGATTATTCAATTAAATCTTGTTTGGAAACAAAATCAAAATCGAATAAAATC
TGTTAAATGGCGGTAA
Found at i:27052553 original size:16 final size:17
Alignment explanation
Indices: 27052522--27052568 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
27052512 CAATTTGAAT
27052522 AAAATCAAATCAAATTG
1 AAAATCAAATCAAATTG
*
27052539 AAAATC-AATCTAATTG
1 AAAATCAAATCAAATTG
* *
27052555 -GAATAAAATCAAAT
1 AAAATCAAATCAAAT
27052569 CAAGATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 3 0.12
16 16 0.64
17 6 0.24
ACGTcount: A:0.57, C:0.11, G:0.06, T:0.26
Consensus pattern (17 bp):
AAAATCAAATCAAATTG
Found at i:27058654 original size:29 final size:29
Alignment explanation
Indices: 27058614--27058692 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27058604 CTTAATAATC
*
27058614 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27058644 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27058673 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27058693 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27059825 original size:17 final size:18
Alignment explanation
Indices: 27059788--27059825 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
27059778 CACTTTTTTT
27059788 TTCCTTTGTTTTCATCATA
1 TTCCTTTGTTTTCAT-ATA
*
27059807 TTCCTTTTTTTTCAT-TA
1 TTCCTTTGTTTTCATATA
27059824 TT
1 TT
27059826 TTATTCTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.13, C:0.18, G:0.03, T:0.66
Consensus pattern (18 bp):
TTCCTTTGTTTTCATATA
Found at i:27062636 original size:28 final size:28
Alignment explanation
Indices: 27062567--27062667 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
27062557 GACAAGATTG
* * * *
27062567 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
27062597 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
27062625 GCACTAAGTGTGCGAG-CTGAATATATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
27062654 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27062668 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:27062661 original size:29 final size:28
Alignment explanation
Indices: 27062596--27062667 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
27062586 AAAATTGTAC
*
27062596 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
27062624 AGCACTAAGTGTGCGAG-CTGAATATATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
27062653 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
27062668 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:27070436 original size:28 final size:28
Alignment explanation
Indices: 27070367--27070467 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
27070357 GACAAGATTG
* * * *
27070367 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
27070397 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
27070425 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
27070454 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27070468 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:27070461 original size:29 final size:28
Alignment explanation
Indices: 27070396--27070467 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
27070386 AAAATTGTAC
*
27070396 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
27070424 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
27070453 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
27070468 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:27074801 original size:28 final size:29
Alignment explanation
Indices: 27074734--27074834 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
27074724 ATAGTGAATC
*
27074734 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
27074763 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
27074791 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
27074821 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27074835 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:27081818 original size:29 final size:29
Alignment explanation
Indices: 27081779--27081857 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27081769 CTTAATAATC
*
27081779 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27081809 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27081838 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27081858 ATCTCAAAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27084169 original size:28 final size:26
Alignment explanation
Indices: 27084072--27084182 Score: 143
Period size: 27 Copynumber: 4.1 Consensus size: 26
27084062 AGCATGGCTG
* *
27084072 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
27084098 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
27084125 CCAGAACAGATATTTGTGGC-GTAGCCA
1 CCAGAACAGATA-TTGTGGCAG-AGCCA
*
27084152 CCAGAAACAGATATTTGTGGCATAGCCA
1 CCAG-AACAGATA-TTGTGGCAGAGCCA
27084180 CCA
1 CCA
27084183 TAACGCTTCC
Statistics
Matches: 77, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
26 13 0.17
27 40 0.52
28 24 0.31
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:27093497 original size:30 final size:30
Alignment explanation
Indices: 27093461--27093561 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
27093451 GACAAGATTG
* * *
27093461 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
27093491 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
27093519 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
27093548 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
27093562 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:27093573 original size:29 final size:28
Alignment explanation
Indices: 27093490--27093565 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
27093480 AAAATTGTAC
* *
27093490 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
27093518 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
27093547 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
27093566 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:27095147 original size:27 final size:26
Alignment explanation
Indices: 27095075--27095189 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 26
27095065 AGCATGGCTG
* * *
27095075 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAATAGATATTGTGGCAGAGCCA
*
27095101 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ATAGATATTGTGGCAGAGCCA
*
27095128 CCAGAATAGATATTTATGGC-GTAGCCA
1 CCAGAATAGATA-TTGTGGCAG-AGCCA
* *
27095155 CCAGAAATAGATATTTGTGGCATAGTCA
1 CCAG-AATAGATA-TTGTGGCAGAGCCA
27095183 CCAGAAT
1 CCAGAAT
27095190 GATTCCTCCA
Statistics
Matches: 77, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
26 12 0.16
27 42 0.55
28 23 0.30
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (26 bp):
CCAGAATAGATATTGTGGCAGAGCCA
Found at i:27095175 original size:28 final size:28
Alignment explanation
Indices: 27095099--27095188 Score: 105
Period size: 28 Copynumber: 3.3 Consensus size: 28
27095089 GTGACAGAGT
* *
27095099 CACCAGATACAGATA-TTGTGGCAG-AGC
1 CACCAGAAATAGATATTTGTGGC-GTAGC
*
27095126 CACCAG-AATAGATATTTATGGCGTAGC
1 CACCAGAAATAGATATTTGTGGCGTAGC
* *
27095153 CACCAGAAATAGATATTTGTGGCATAGT
1 CACCAGAAATAGATATTTGTGGCGTAGC
27095181 CACCAGAA
1 CACCAGAA
27095189 TGATTCCTCC
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.13
27 21 0.39
28 26 0.48
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (28 bp):
CACCAGAAATAGATATTTGTGGCGTAGC
Found at i:27095320 original size:26 final size:26
Alignment explanation
Indices: 27095291--27095365 Score: 141
Period size: 26 Copynumber: 2.9 Consensus size: 26
27095281 CAAAATTAAC
27095291 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTCATTTTGCA
27095317 CCTAGGGGTATAATGGTCATTTTGCA
1 CCTAGGGGTATAATGGTCATTTTGCA
*
27095343 CCTAGGGGTATAATGGTAATTTT
1 CCTAGGGGTATAATGGTCATTTT
27095366 CATTCTTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.24, C:0.13, G:0.27, T:0.36
Consensus pattern (26 bp):
CCTAGGGGTATAATGGTCATTTTGCA
Found at i:27107523 original size:48 final size:48
Alignment explanation
Indices: 27107448--27107629 Score: 260
Period size: 48 Copynumber: 3.8 Consensus size: 48
27107438 ACCGTACTAA
27107448 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
* * *
27107496 ATATGCCTGTGTAAGACCATG-CTTGGGACATTGAATCGGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTC-TGGGACATGGCATCGGTGATGATAT
* * * *
27107544 ATGTGTCAGTGCAAGACCATGTCTGGGACATGGCATCTGTGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
*
27107592 GTGTG-CTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATCG
27107630 ACGATGGTAT
Statistics
Matches: 117, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
47 2 0.02
48 114 0.97
49 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.29
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
Found at i:27107641 original size:48 final size:47
Alignment explanation
Indices: 27107448--27107675 Score: 253
Period size: 48 Copynumber: 4.7 Consensus size: 47
27107438 ACCGTACTAA
27107448 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
1 ATGTG-CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
* * *
27107496 ATATGCCTGTGTAAGACCATG-CTTGGGACATTGAATCGGTGATGATAT
1 ATGTG-CTGTGTAAGACCATGTC-TGGGACATGGCATCGGTGATGATAT
* * *
27107544 ATGTGTCAGTGCAAGACCATGTCTGGGACATGGCATCTGTGATGATAT
1 ATGTG-CTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
* ** *
27107592 GTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGGTAT
1 ATGTGCT-GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
* * * *
27107640 GTGGATTCT-TGTAAGATCATGTCGGGGACATGGCAT
1 AT-G-TGCTGTGTAAGACCATGTCTGGGACATGGCAT
27107676 TGGTACTTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
47 2 0.01
48 148 0.95
49 2 0.01
50 3 0.02
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (47 bp):
ATGTGCTGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATAT
Found at i:27110395 original size:12 final size:12
Alignment explanation
Indices: 27110378--27110404 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
27110368 ACAGGTTTGG
27110378 CACGGCCTAGCA
1 CACGGCCTAGCA
27110390 CACGGCCTAGCA
1 CACGGCCTAGCA
27110402 CAC
1 CAC
27110405 AGGCGTGCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.44, G:0.22, T:0.07
Consensus pattern (12 bp):
CACGGCCTAGCA
Found at i:27113288 original size:43 final size:43
Alignment explanation
Indices: 27113241--27113335 Score: 163
Period size: 43 Copynumber: 2.2 Consensus size: 43
27113231 ATGTGATTAT
27113241 GTGTAAGACCATGTCTGGGACATTGACACCGTTATTTGATTTC
1 GTGTAAGACCATGTCTGGGACATTGACACCGTTATTTGATTTC
* * *
27113284 GTGTAAGACCATGTTTGGGACATTGGCATCGTTATTTGATTTC
1 GTGTAAGACCATGTCTGGGACATTGACACCGTTATTTGATTTC
27113327 GTGTAAGAC
1 GTGTAAGAC
27113336 AATAGCTAGG
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATTGACACCGTTATTTGATTTC
Found at i:27115714 original size:28 final size:29
Alignment explanation
Indices: 27115663--27115718 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 29
27115653 GCACGAATAC
*
27115663 AAGGTGATTTGGGCCTAGCGGGCCATATA
1 AAGGTGATTTGGGCCTAACGGGCCATATA
*
27115692 AAGGTGATTT-GGCCTAATGGGCCATAT
1 AAGGTGATTTGGGCCTAACGGGCCATAT
27115719 GAGTATGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.27
Consensus pattern (29 bp):
AAGGTGATTTGGGCCTAACGGGCCATATA
Found at i:27115731 original size:28 final size:28
Alignment explanation
Indices: 27115702--27115805 Score: 97
Period size: 29 Copynumber: 3.6 Consensus size: 28
27115692 AAGGTGATTT
27115702 GGCCTAATGGGCCATATGAGTATGAATTG
1 GGCCTAATGGGCCATATGA-TATGAATTG
* * *
27115731 GGCCTGATGGGTCGA-ATGAATGTGAATTG
1 GGCCTAATGGG-CCATATG-ATATGAATTG
* *
27115760 GGCCTGATGGACCATATGA-ATGAGATTG
1 GGCCTAATGGGCCATATGATATGA-ATTG
27115788 GGCC-AAGTGGGCCATATG
1 GGCCTAA-TGGGCCATATG
27115806 CATGTATGTA
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
27 4 0.06
28 21 0.34
29 34 0.55
30 3 0.05
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (28 bp):
GGCCTAATGGGCCATATGATATGAATTG
Done.