Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 9 of 433
Found at i:2668083 original size:14 final size:14
Alignment explanation
Indices: 2668066--2668093 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2668056 TTTTGAACTT
2668066 ATTAAATTGAAATA
1 ATTAAATTGAAATA
2668080 ATTAAATTGAAATA
1 ATTAAATTGAAATA
2668094 TTGTTACAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
ATTAAATTGAAATA
Found at i:2668439 original size:10 final size:8
Alignment explanation
Indices: 2668403--2668443 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
2668393 AAATTGACAT
*
2668403 AAATAAAA
1 AAATTAAA
2668411 AAATTAAA
1 AAATTAAA
2668419 AAATTAAA
1 AAATTAAA
2668427 AAATTAATCA
1 AAATTAA--A
2668437 AAATTAA
1 AAATTAA
2668444 CTCAAAATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
8 22 0.73
10 8 0.27
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:2672247 original size:30 final size:30
Alignment explanation
Indices: 2672206--2672266 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
2672196 ATTATAATTA
*
2672206 GATACTAGTATACAATCTATGTTTAAACTT
1 GATACTAGTATACAATCTACGTTTAAACTT
* *
2672236 GATATTAGTATATAATCTACGTTTAAACTT
1 GATACTAGTATACAATCTACGTTTAAACTT
2672266 G
1 G
2672267 TAAATTTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (30 bp):
GATACTAGTATACAATCTACGTTTAAACTT
Found at i:2673300 original size:31 final size:32
Alignment explanation
Indices: 2673262--2673338 Score: 97
Period size: 29 Copynumber: 2.5 Consensus size: 32
2673252 ACGATTCAAA
*
2673262 TTATATATATATAATTACAC-TAAATTAAA-T
1 TTATATATATATAATTACACATAAATAAAAGT
*
2673292 TT-TATATATAAAATTACACATTAAATAAAAGT
1 TTATATATATATAATTACACA-TAAATAAAAGT
*
2673324 TTATATATATTTAAT
1 TTATATATATATAAT
2673339 ATTTATCCTC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 16 0.41
30 2 0.05
31 8 0.21
32 3 0.08
33 10 0.26
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.44
Consensus pattern (32 bp):
TTATATATATATAATTACACATAAATAAAAGT
Found at i:2675329 original size:19 final size:20
Alignment explanation
Indices: 2675293--2675339 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
2675283 TACAAAATAG
2675293 TCAAAATAATTTTCAAAAAT
1 TCAAAATAATTTTCAAAAAT
2675313 TCAAAAT-ATTTAT-AAAAAT
1 TCAAAATAATTT-TCAAAAAT
2675332 TCTAAAAT
1 TC-AAAAT
2675340 TTGTATTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (20 bp):
TCAAAATAATTTTCAAAAAT
Found at i:2675382 original size:18 final size:17
Alignment explanation
Indices: 2675348--2675420 Score: 56
Period size: 17 Copynumber: 4.0 Consensus size: 17
2675338 ATTTGTATTC
*
2675348 TTAAAAAAATTATAAAT
1 TTAAAAAAATTAAAAAT
2675365 TTAAAAAAATCTAAAAAT
1 TTAAAAAAAT-TAAAAAT
* *
2675383 ATATATAAAAAGTTTAAAAT
1 -T-TA-AAAAAATTAAAAAT
* *
2675403 TTATAAAATTTATAAAAT
1 TTAAAAAAATTA-AAAAT
2675421 AATAATTTTG
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
17 16 0.36
18 13 0.29
19 2 0.04
20 8 0.18
21 6 0.13
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (17 bp):
TTAAAAAAATTAAAAAT
Found at i:2678550 original size:19 final size:19
Alignment explanation
Indices: 2678526--2678582 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
2678516 TTAATGATTT
2678526 TTTATTAATAAATTATTAG
1 TTTATTAATAAATTATTAG
* ***
2678545 TTTATTCAGCTATTATT--
1 TTTATTAATAAATTATTAG
2678562 TTT-TTAATAAATTATTAG
1 TTTATTAATAAATTATTAG
2678580 TTT
1 TTT
2678583 GAACAAAGAT
Statistics
Matches: 28, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
16 9 0.32
17 3 0.11
18 3 0.11
19 13 0.46
ACGTcount: A:0.33, C:0.04, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTATTAATAAATTATTAG
Found at i:2678628 original size:19 final size:20
Alignment explanation
Indices: 2678606--2678643 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
2678596 TAACATTTAA
2678606 TTATATTATTAAA-ATCGAT
1 TTATATTATTAAATATCGAT
* *
2678625 TTATTTTTTTAAATATCGA
1 TTATATTATTAAATATCGA
2678644 AAAAATCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.53
Consensus pattern (20 bp):
TTATATTATTAAATATCGAT
Found at i:2679999 original size:18 final size:19
Alignment explanation
Indices: 2679970--2680012 Score: 72
Period size: 17 Copynumber: 2.4 Consensus size: 19
2679960 TTTTAAAAAT
2679970 ATATTTTATTTTTA-TATA
1 ATATTTTATTTTTATTATA
2679988 AT-TTTTATTTTTATTATA
1 ATATTTTATTTTTATTATA
2680006 ATATTTT
1 ATATTTT
2680013 CCATACCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.48
18 8 0.35
19 4 0.17
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
ATATTTTATTTTTATTATA
Found at i:2680011 original size:20 final size:19
Alignment explanation
Indices: 2679954--2680012 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 19
2679944 ATACTAAATA
*
2679954 TTTACTTTTTA-AAAATATAT
1 TTTA-TTTTTATATAATAT-T
2679974 TTTATTTTTATAT-A-ATT
1 TTTATTTTTATATAATATT
2679991 TTTATTTTTATTATAATATT
1 TTTATTTTTA-TATAATATT
2680011 TT
1 TT
2680013 CCATACCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
17 11 0.32
18 5 0.15
19 8 0.24
20 10 0.29
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTATTTTTATATAATATT
Found at i:2683199 original size:85 final size:85
Alignment explanation
Indices: 2683054--2683224 Score: 279
Period size: 85 Copynumber: 2.0 Consensus size: 85
2683044 GTCACTTCTC
* * * *
2683054 TTAATCACTAAAACCTAGTACTACTGTTTATGTCTGAACATTTGGGCCTTCTTTAGACATGTTGC
1 TTAATCACCAAAACCTAGTACTACTGATTACGTCTGAACATTTGGGCCTTCTTTAAACATGTTGC
2683119 AGCTTGAACAATGATAGAAT
66 AGCTTGAACAATGATAGAAT
* * *
2683139 TTAATCGCCAAAACCTAGTACTTCTGATTACGTCTGAACCTTTGGGCCTTCTTTAAACATGTTGC
1 TTAATCACCAAAACCTAGTACTACTGATTACGTCTGAACATTTGGGCCTTCTTTAAACATGTTGC
2683204 AGCTTGAACAATGATAGAAT
66 AGCTTGAACAATGATAGAAT
2683224 T
1 T
2683225 GGGCTATTGT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (85 bp):
TTAATCACCAAAACCTAGTACTACTGATTACGTCTGAACATTTGGGCCTTCTTTAAACATGTTGC
AGCTTGAACAATGATAGAAT
Found at i:2688526 original size:31 final size:30
Alignment explanation
Indices: 2688491--2688555 Score: 103
Period size: 31 Copynumber: 2.1 Consensus size: 30
2688481 AGTTATCAGA
2688491 AAATAATTTTTTAAAAATAATTTAGTGATTT
1 AAATAATTTTTTAAAAATAATTTAGTGA-TT
**
2688522 AAATAATTTTTTTTAAATAATTTAGTGATT
1 AAATAATTTTTTAAAAATAATTTAGTGATT
2688552 AAAT
1 AAAT
2688556 TGTAACTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 6 0.19
31 26 0.81
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (30 bp):
AAATAATTTTTTAAAAATAATTTAGTGATT
Found at i:2688527 original size:17 final size:17
Alignment explanation
Indices: 2688505--2688555 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 17
2688495 AATTTTTTAA
2688505 AAATAATTTAGTGATTT
1 AAATAATTTAGTGATTT
*
2688522 AAATAATTT--T-TTTT
1 AAATAATTTAGTGATTT
2688536 AAATAATTTAGTGA-TT
1 AAATAATTTAGTGATTT
2688552 AAAT
1 AAAT
2688556 TGTAACTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
14 12 0.41
15 1 0.03
16 7 0.24
17 9 0.31
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (17 bp):
AAATAATTTAGTGATTT
Found at i:2688538 original size:14 final size:14
Alignment explanation
Indices: 2688491--2688544 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
2688481 AGTTATCAGA
**
2688491 AAATAATTTTTTAA
1 AAATAATTTTTTTT
*
2688505 AAATAATTTAGTGATTT
1 AAATAATTT--T-TTTT
2688522 AAATAATTTTTTTT
1 AAATAATTTTTTTT
2688536 AAATAATTT
1 AAATAATTT
2688545 AGTGATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 21 0.64
15 1 0.03
16 1 0.03
17 10 0.30
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (14 bp):
AAATAATTTTTTTT
Found at i:2690693 original size:2 final size:2
Alignment explanation
Indices: 2690686--2690719 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
2690676 ACAATAATAC
* *
2690686 TA TA TA TA AA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2690720 ATAGAAATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:2690825 original size:38 final size:39
Alignment explanation
Indices: 2690734--2690829 Score: 103
Period size: 38 Copynumber: 2.5 Consensus size: 39
2690724 AAATACACAC
*
2690734 TACTATATAATAATAATAAA-TATAGAAATAAAAAAGCAA
1 TACTATATAATAAT-ATAAATTAAAGAAATAAAAAAGCAA
* *
2690773 -A-TATAATAAAAATATTAAATTAAAGTAATAAAAAA-CAA
1 TACTAT-ATAATAATA-TAAATTAAAGAAATAAAAAAGCAA
2690811 TACTATAT-ATAATATAAAT
1 TACTATATAATAATATAAAT
2690830 ATATATATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
37 9 0.19
38 20 0.42
39 16 0.33
40 3 0.06
ACGTcount: A:0.64, C:0.04, G:0.03, T:0.29
Consensus pattern (39 bp):
TACTATATAATAATATAAATTAAAGAAATAAAAAAGCAA
Found at i:2690836 original size:17 final size:17
Alignment explanation
Indices: 2690809--2690866 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
2690799 AATAAAAAAC
2690809 AATACTATATATAATATA
1 AATA-TATATATAATATA
*
2690827 AATATATATATATACATA
1 AATATATATATA-ATATA
*
2690845 AA-ATATACACTAATATA
1 AATATATATA-TAATATA
2690862 TAATA
1 -AATA
2690867 GTAATAGTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 18 0.55
18 14 0.42
19 1 0.03
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (17 bp):
AATATATATATAATATA
Found at i:2690836 original size:19 final size:19
Alignment explanation
Indices: 2690814--2690851 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
2690804 AAAACAATAC
2690814 TATATATA-ATATAAATATA
1 TATATATACATA-AAATATA
2690833 TATATATACATAAAATATA
1 TATATATACATAAAATATA
2690852 CACTAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (19 bp):
TATATATACATAAAATATA
Found at i:2690959 original size:3 final size:3
Alignment explanation
Indices: 2690951--2691161 Score: 75
Period size: 3 Copynumber: 68.0 Consensus size: 3
2690941 ACAATAGGGG
*
2690951 TAA TAA TAA TAA TAA TAA TACA -AA CAA TAA TACA TATA TATA TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TA-A TA-A TA-A TAA TAA
* * * *
2690999 TAG TAGT TAGA -AA TAA -AA -AA TAA TAA -AA GTAA CAA TAA TGA TAA
1 TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
* * * **
2691043 TAA TAA T-A TAAA TAA -ATA TGGA GAGG GCA TATA TAA T-A TAA TAA
1 TAA TAA TAA T-AA TAA TA-A T-AA TA-A TAA TA-A TAA TAA TAA TAA
2691087 TAA T-A TAAA TAA TAA TATA TACA TGAGA TAA TAA TAA TAA TAA T-A
1 TAA TAA T-AA TAA TAA TA-A TA-A T-A-A TAA TAA TAA TAA TAA TAA
* *
2691132 TAAA TAA TAG TAA AAA TAA TAA -AA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
2691162 AACGAAGCTC
Statistics
Matches: 162, Mismatches: 23, Indels: 46
0.70 0.10 0.20
Matches are distributed among these distances:
2 19 0.12
3 107 0.66
4 33 0.20
5 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:2691510 original size:26 final size:25
Alignment explanation
Indices: 2691461--2691510 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
2691451 AAAAACTAGC
* *
2691461 CTTTCCAAGAAACAAAAATAACCTT
1 CTTTCCAAAAAACAAAAAAAACCTT
2691486 CTTTCCAAAAAACAAAAAAACACCT
1 CTTTCCAAAAAACAAAAAAA-ACCT
2691511 CCAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.52, C:0.26, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAACAAAAAAAACCTT
Found at i:2691516 original size:19 final size:19
Alignment explanation
Indices: 2691489--2691531 Score: 68
Period size: 21 Copynumber: 2.2 Consensus size: 19
2691479 TAACCTTCTT
2691489 TCCAAAAAACAAAAAAACACC
1 TCCAAAAAA-AAAAAAA-ACC
2691510 TCCAAAAAAAAAAAAAACC
1 TCCAAAAAAAAAAAAAACC
2691529 TCC
1 TCC
2691532 TCCAAAACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 6 0.27
20 7 0.32
21 9 0.41
ACGTcount: A:0.65, C:0.28, G:0.00, T:0.07
Consensus pattern (19 bp):
TCCAAAAAAAAAAAAAACC
Found at i:2691560 original size:23 final size:22
Alignment explanation
Indices: 2691489--2691573 Score: 91
Period size: 22 Copynumber: 3.9 Consensus size: 22
2691479 TAACCTTCTT
* *
2691489 TCCAAAAAACAAAAAAA-CACC
1 TCCAAAAAAAAAAAAAACCTCC
2691510 TCCAAAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAAAACCTCC
* * * *
2691532 TCCAAAACAAAGAACAATCCTTC
1 TCCAAAA-AAAAAAAAAACCTCC
*
2691555 TCCAAAAAAAACAAAAACC
1 TCCAAAAAAAAAAAAAACC
2691574 CCCTATAAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 16 0.31
22 18 0.35
23 18 0.35
ACGTcount: A:0.61, C:0.28, G:0.01, T:0.09
Consensus pattern (22 bp):
TCCAAAAAAAAAAAAAACCTCC
Found at i:2691680 original size:21 final size:21
Alignment explanation
Indices: 2691642--2691698 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
2691632 TGGGGTGGTT
2691642 TAGGTGGCCAAGGGTGGTGGAG
1 TAGGTGGCCAA-GGTGGTGGAG
*
2691664 TTGGTGGCCAAGGTGGTGGAG
1 TAGGTGGCCAAGGTGGTGGAG
2691685 TAGGTGGCCAAGGT
1 TAGGTGGCCAAGGT
2691699 TTTTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
21 23 0.70
22 10 0.30
ACGTcount: A:0.18, C:0.11, G:0.51, T:0.21
Consensus pattern (21 bp):
TAGGTGGCCAAGGTGGTGGAG
Found at i:2692228 original size:132 final size:132
Alignment explanation
Indices: 2691974--2693087 Score: 1931
Period size: 132 Copynumber: 8.4 Consensus size: 132
2691964 GATATCCGCT
* * * *
2691974 ATCTTTGATCTGTTTCAACTGTAAGCACAGGAATGTCAGATTTTCTATCTTCGATCCGTTCCCTA
1 ATCTTTGATCTGCTTC-ACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTA
* *
2692039 TAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCT
65 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCT
2692104 GAA
130 GAA
* * * *
2692107 ATCTTCGATCTACTTCACTGTAAGCACAAGAATGTCAGATCTGCTATCTTCGATCCGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
2692172 AAGCACAGGGATGCCAAATCTGTTGTTTTCAACTTGTTCCCTATAAGCACAAGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2692237 AA
131 AA
* * *
2692239 ATCTTTGATCTGCTTTACTGTAAGCACAGGAATGTCAGATTTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
2692304 AAGCACAGGGATGCCAAATCTGATGTTTTTAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2692369 AA
131 AA
*
2692371 ATCTTTGATCTGCTTCACTATAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
2692436 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCAG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2692501 AA
131 AA
*
2692503 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* *
2692568 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2692633 AA
131 AA
*
2692635 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTGTCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
*
2692700 AAGCACAAGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2692765 AA
131 AA
* *
2692767 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATATTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
2692832 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2692897 AA
131 AA
*
2692899 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
* * *
2692964 AAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
66 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2693029 AA
131 AA
* * *
2693031 ATCTTGGATCTGCTTCACTGTAAACACAGGAATGTCAGATCTGCTATCTTCGGTCTG
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTG
2693088 CTCCTCTGCA
Statistics
Matches: 934, Mismatches: 47, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
132 921 0.99
133 13 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATCTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:2693059 original size:44 final size:43
Alignment explanation
Indices: 2692074--2693067 Score: 464
Period size: 44 Copynumber: 22.6 Consensus size: 43
2692064 GTTTTCAACT
* *
2692074 TGTTCCCTATAAGCACAGGGATGTCATGCTGAAATCTTCGATC
1 TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * * * ** *
2692117 TACTTCACTGTAAGCACAAGAATGTCA-GATCTGCTATCTTCGATC
1 T-GTTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * * *** * *
2692162 CGTTCCCTATAAGCACAGGGATGCCAAAT-CTGTTGT-TTTCAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* * *
2692205 TTGTTCCCTATAAGCACAAGGATGCCATGCTGAAATCTTTGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * * * ** * *
2692249 TGCTTTACTGTAAGCACAGGAATGTCA-GATTTGCTATCTTCGATT
1 TG-TTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * ** * *
2692294 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTTAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* *
2692337 TTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* ** *
2692381 TGCTTCACTATAAGCACAGGAATGTCA-GATCTGCTATCTTCGATC
1 TG-TTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * ** * *
2692426 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* * *
2692469 TTGTTCCCTATAAGCACAGGGATGCCATGCAGAAATCTTTGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * ** * *
2692513 TGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATT
1 TG-TTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * ** * *
2692558 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTAT-TTTCAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* *
2692601 TTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * *** *
2692645 TGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTGTCTTCGATC
1 TG-TTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * * ** * *
2692690 TGTTCCCTATAAGCACAAGGATGCCAAAT-CTGATGT-TTTCAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* *
2692733 TTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * ** * * *
2692777 TGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATATTCGATT
1 TG-TTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * ** * *
2692822 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATGT-TTTCAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* *
2692865 TTGTTCCCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * ** * *
2692909 TGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATT
1 TG-TTCACTATAAGCACAGGGATGTCATG--CTGAAATCTTTGATC
* * ** * *
2692954 TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTAT-TTTCAAC
1 TGTTCACTATAAGCACAGGGATGTC--ATGCTGAAATCTTTGATC
* *
2692997 TTGTTCCCTATAAGCACAGGGATGTCATGCTGAAATCTTGGATC
1 -TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
* * *
2693041 TGCTTCACTGTAAACACAGGAATGTCA
1 TG-TTCACTATAAGCACAGGGATGTCA
2693068 GATCTGCTAT
Statistics
Matches: 723, Mismatches: 164, Indels: 127
0.71 0.16 0.13
Matches are distributed among these distances:
42 14 0.02
43 79 0.11
44 534 0.74
45 89 0.12
46 7 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (43 bp):
TGTTCACTATAAGCACAGGGATGTCATGCTGAAATCTTTGATC
Found at i:2693219 original size:68 final size:68
Alignment explanation
Indices: 2693135--2693333 Score: 278
Period size: 68 Copynumber: 2.9 Consensus size: 68
2693125 TCTTCTTCCA
* * * * *
2693135 CTGAAACTTCAAGGAGATCTGCTTTGGCTTTTAGCCTCTCCAATACCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTTTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
2693200 -TT
66 CCT
2693202 GCTGAAACTTCAAGGAGATCTG-TTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAG
1 -CTGAAACTTCAAGGAGATCTGCTT-TGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAG
2693266 ATCCT
64 ATCCT
* * *
2693271 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCAGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTTTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
2693334 AATTTGTAAT
Statistics
Matches: 119, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
67 8 0.07
68 109 0.92
69 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTTTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:2693463 original size:43 final size:43
Alignment explanation
Indices: 2693405--2694032 Score: 416
Period size: 43 Copynumber: 14.4 Consensus size: 43
2693395 CTATTTTCTA
* **
2693405 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * *
2693448 ACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
2693493 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
* * *
2693536 ACTGCTTAGGAGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* *
2693581 ACTGCTTAGGGGTTTAAGA-CTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** ** **** *
2693624 ACTGCTTAGGGGGTTAAAGCCCAT-TATTTTTTATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
* * *
2693668 ACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
2693713 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** * ** ** *
2693756 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
* ** ** *
2693800 ACTGCTTAAGGGGTTAAGATCT-TCATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGT-AAATTCGGCCTGTTACCCT
** ** * *
2693843 ACTGCTTA-GGGGTTAAGATCT-TCATCTTCGATCTGTTTCACT
1 ACTGCTTAGGGGGTTAAGATCTGT-AAATTCGGCCTGTTACCCT
* * * *
2693885 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * * * * ** *
2693927 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGA-TC-T-GTAAATTCGGCCTGTTACCCT
*
2693971 ACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* *
2694015 ATTGCTTAGGGGTTTAAG
1 ACTGCTTAGGGGGTTAAG
2694033 GCTTGTGAAT
Statistics
Matches: 466, Mismatches: 92, Indels: 52
0.76 0.15 0.09
Matches are distributed among these distances:
40 2 0.00
41 1 0.00
42 71 0.15
43 173 0.37
44 100 0.21
45 119 0.26
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (43 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
Found at i:2693521 original size:88 final size:88
Alignment explanation
Indices: 2693405--2694044 Score: 467
Period size: 88 Copynumber: 7.3 Consensus size: 88
2693395 CTATTTTCTA
* * *
2693405 ACTGCTTAAGGGG-TTAA-GATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGAT
1 ACTGCTT-AGGGGTTTAAGGCT-TGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGAT
*
2693468 TTGTAAATCTTCAGCCTGTTACCCT
64 CTGTAAATCTTCAGCCTGTTACCCT
* * * *
2693493 ACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGAGGTTAAGATTT
1 ACTGCTTAGGGGTTTAAGGCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATCT
2693558 GTAAATCTTCAGCCTGTTACCCT
66 GTAAATCTTCAGCCTGTTACCCT
* * * **
2693581 ACTGCTTAGGGGTTTAAGACTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCC
1 ACTGCTTAGGGGTTTAAGGCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTT-AAGATC
* * * * *
2693646 AT-T-ATTTTTTA-TCTGTTTCCCT
65 -TGTAAATCTTCAGCCTGTTACCCT
* * * * *
2693668 ACTACTTAGGGGGTTAA-GATCTGTAAATCTTC-AGCCAGTTACCCTACTGCTTAGGGGTTTAAG
1 ACTGCTTAGGGGTTTAAGGCT-TGTAAA--TTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAAG
* * *
2693731 -GCTTGTAAA--TTCGGCTTGTTACCCT
62 ATC-TGTAAATCTTCAGCCTGTTACCCT
* * *** ** * * *
2693756 ACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGGGTTAAGATC
1 ACTGCTTAGGGGTTTAAGGCTTGT-AAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATC
* * *
2693821 T-T-CATCTTC-GATCTGTTTCCCT
65 TGTAAATCTTCAG-CCTGTTACCCT
* * ** * * * * *
2693843 ACTGCTTAGGGG-TTAAGATCTT-CATCTTCGATCTGTTTCACTACTGCTTAGGGAGATAAGATC
1 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATC
* * *
2693906 TG-CAA--TTCGGTCTGTTACCCT
65 TGTAAATCTTCAGCCTGTTACCCT
* * * * * *
2693927 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCTACTGCTTA-GGGGTTAAGA
1 ACTGCTTAGGGGTTTAAG--GCTT-GTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGA
2693989 TCTGTAAATCTTCAGCCTGTTACCCT
63 TCTGTAAATCTTCAGCCTGTTACCCT
* *
2694015 ATTGCTTAGGGGTTTAAGGCTTGTGAATTC
1 ACTGCTTAGGGGTTTAAGGCTTGTAAATTC
2694045 ACTGATTCTA
Statistics
Matches: 445, Mismatches: 76, Indels: 63
0.76 0.13 0.11
Matches are distributed among these distances:
84 23 0.05
85 58 0.13
86 40 0.09
87 94 0.21
88 194 0.44
89 35 0.08
90 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (88 bp):
ACTGCTTAGGGGTTTAAGGCTTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAGATCT
GTAAATCTTCAGCCTGTTACCCT
Found at i:2693593 original size:132 final size:132
Alignment explanation
Indices: 2693405--2694044 Score: 528
Period size: 132 Copynumber: 4.9 Consensus size: 132
2693395 CTATTTTCTA
* *
2693405 ACTGCTTAAGGGGTTAAGATCTGTAAA--TTCAACCTGTTACCCTACTGGTTAGGGGGTTAAGAT
1 ACTGCTT-AGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-GGGGTTAAGAT
* * *
2693468 TTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCT-TGTTA
64 TTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGTAAATTCGGATCTGTTA
2693532 CCCT
129 CCCT
* *
2693536 ACTGCTTAGGAGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGAC
1 ACTGCTTAGG-GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGAT
* * *** * * *** *
2693601 TTGTAAA--TTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATTATTTTTTATCTGTTT
64 TTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGTAAATTCGGATCTGTTA
2693664 CCCT
129 CCCT
* * **
2693668 ACTACTTAGGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGGGTTTAAGGC
1 ACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGAT
* * *** **
2693733 TTGTAAA--TTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC-GATCTGTT
64 TTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGT-AAATTCGGATCTGTT
*
2693795 TCCCT
128 ACCCT
* * *
2693800 ACTGCTTAAGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAGGGGTTAAGAT
1 ACTGCTT-AGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGTTAAGAT
* * * * * * * * *
2693862 CT-T-CATCTTC-GATCTGTTTCACTACTGCTTAGGGAGAT-AAGATCTG-CAATTCGG-TCTGT
64 TTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAAGCT-TGTAAATTCGGATCTGT
2693921 TACCCT
127 TACCCT
* * * ** * *
2693927 ACCGATTAGGGGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCTACTGCTTAGGGGTTAAGA
1 ACTGCTTAGGGG-TTAAGA-TCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGTTAAGA
* * * * *
2693989 TCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGGGGTTTAAGGCTTGTGAATTC
63 TTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGTAAATTC
2694045 ACTGATTCTA
Statistics
Matches: 423, Mismatches: 65, Indels: 42
0.80 0.12 0.08
Matches are distributed among these distances:
126 5 0.01
127 25 0.06
128 49 0.12
129 31 0.07
130 56 0.13
131 69 0.16
132 148 0.35
133 40 0.09
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (132 bp):
ACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGATTT
GTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAAGCTTGTAAATTCGGATCTGTTACC
CT
Found at i:2694202 original size:66 final size:66
Alignment explanation
Indices: 2694096--2694222 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
2694086 TCTATGCTTA
*
2694096 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
2694161 G
66 G
*
2694162 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
2694223 TATATGAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Found at i:2695406 original size:6 final size:6
Alignment explanation
Indices: 2695397--2695438 Score: 75
Period size: 6 Copynumber: 7.0 Consensus size: 6
2695387 GTTTTTTTTT
*
2695397 TTTGCC TTTGCC TTTGCC TTTGTC TTTGCC TTTGCC TTTGCC
1 TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC TTTGCC
2695439 ATATAACTCC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.31, G:0.17, T:0.52
Consensus pattern (6 bp):
TTTGCC
Found at i:2699193 original size:17 final size:17
Alignment explanation
Indices: 2699162--2699222 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
2699152 TAATTAATTA
2699162 ATTTTAAATATATATTTT
1 ATTTTAAA-ATATATTTT
* *
2699180 ATTATT-TAATATATGTT
1 ATT-TTAAAATATATTTT
2699197 ATTTTAAAATATATTTAT
1 ATTTTAAAATATATTT-T
2699215 ATTTTAAA
1 ATTTTAAA
2699223 TTTAATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 2 0.06
17 19 0.53
18 13 0.36
19 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTTAAAATATATTTT
Found at i:2700174 original size:40 final size:40
Alignment explanation
Indices: 2700119--2700195 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
2700109 TTTAAAATTC
*
2700119 ATAATATTTCTTCTTGTAGGTAGTTGTCGAAAAGATTTTT
1 ATAATATTTCTTCTTGTAGGTAATTGTCGAAAAGATTTTT
*
2700159 ATAATATTTCTTCTTGTAGGTAATTGTCGATAAGATT
1 ATAATATTTCTTCTTGTAGGTAATTGTCGAAAAGATT
2700196 AAAAGTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.47
Consensus pattern (40 bp):
ATAATATTTCTTCTTGTAGGTAATTGTCGAAAAGATTTTT
Found at i:2701422 original size:10 final size:10
Alignment explanation
Indices: 2701396--2701433 Score: 51
Period size: 9 Copynumber: 3.7 Consensus size: 10
2701386 ATTAAAAATT
2701396 ATTTTTATATAA
1 ATTTTTA-AT-A
2701408 ATTTTTAATA
1 ATTTTTAATA
2701418 A-TTTTAATA
1 ATTTTTAATA
2701427 ATTTTTA
1 ATTTTTA
2701434 TTTTTATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 9 0.36
10 7 0.28
11 2 0.08
12 7 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:2701476 original size:8 final size:8
Alignment explanation
Indices: 2701410--2701488 Score: 57
Period size: 7 Copynumber: 10.5 Consensus size: 8
2701400 TTATATAAAT
2701410 TTTTAATAA
1 TTTTAAT-A
2701419 TTTTAATAA
1 TTTTAAT-A
2701428 TTTT--TA
1 TTTTAATA
*
2701434 TTTTTAT-
1 TTTTAATA
*
2701441 TTTTGAATT
1 TTTT-AATA
2701450 TTTTAA-A
1 TTTTAATA
2701457 TTTTAATA
1 TTTTAATA
2701465 ---TAATA
1 TTTTAATA
2701470 TTTTAATA
1 TTTTAATA
2701478 TTTT-ATA
1 TTTTAATA
2701485 TTTT
1 TTTT
2701489 TTTAAGATGA
Statistics
Matches: 60, Mismatches: 2, Indels: 18
0.75 0.03 0.22
Matches are distributed among these distances:
5 5 0.08
6 5 0.08
7 18 0.30
8 15 0.25
9 17 0.28
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (8 bp):
TTTTAATA
Found at i:2701485 original size:20 final size:20
Alignment explanation
Indices: 2701398--2701485 Score: 62
Period size: 20 Copynumber: 4.4 Consensus size: 20
2701388 TAAAAATTAT
2701398 TTTTATATAA-ATTTTTAATAA
1 TTTTATATAATA-TTTTAAT-A
2701419 TTTTA-ATAAT-TTTT-AT-
1 TTTTATATAATATTTTAATA
* *
2701435 TTTTATTTTTGAATTTTTTAA-A
1 TTTTA--TAT-AATATTTTAATA
2701457 TTTTAATATAATATTTTAATA
1 TTTT-ATATAATATTTTAATA
2701478 TTTTATAT
1 TTTTATAT
2701486 TTTTTTAAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 21
0.69 0.04 0.27
Matches are distributed among these distances:
16 5 0.09
18 2 0.04
19 5 0.09
20 20 0.37
21 16 0.30
22 5 0.09
23 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (20 bp):
TTTTATATAATATTTTAATA
Found at i:2701501 original size:29 final size:31
Alignment explanation
Indices: 2701469--2701527 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 31
2701459 TTAATATAAT
*
2701469 ATTTTAATATT-TTAT-ATT-TTTTTAAGATG
1 ATTTTAAT-TTCTTATAATTATTGTTAAGATG
2701498 ATTTTAATTTCTTATAATTATTGTTAAGAT
1 ATTTTAATTTCTTATAATTATTGTTAAGAT
2701528 TTAAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 2 0.08
29 12 0.46
30 3 0.12
31 9 0.35
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.59
Consensus pattern (31 bp):
ATTTTAATTTCTTATAATTATTGTTAAGATG
Found at i:2703582 original size:15 final size:16
Alignment explanation
Indices: 2703561--2703607 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 16
2703551 TATACTACAA
2703561 AATATTTATTATTAAT
1 AATATTTATTATTAAT
*
2703577 -ATATTTATAATTGTAAT
1 AATATTTATTA-T-TAAT
2703594 AAATATTTATTATT
1 -AATATTTATTATT
2703608 TGTAACACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
15 9 0.36
16 1 0.04
17 5 0.20
18 1 0.04
19 9 0.36
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
AATATTTATTATTAAT
Found at i:2704555 original size:51 final size:51
Alignment explanation
Indices: 2704484--2704647 Score: 211
Period size: 51 Copynumber: 3.2 Consensus size: 51
2704474 CTGATCACAT
2704484 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
* * *
2704535 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCACTTATCACTTGTCGC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAA--AC-TACCACTTATCAC
* * * * **
2704589 TTGTCGCTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
2704640 TTGTCACT
1 TTATCACT
2704648 GATCAGAAGT
Statistics
Matches: 97, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
51 53 0.55
52 1 0.01
53 2 0.02
54 41 0.42
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:2712306 original size:51 final size:51
Alignment explanation
Indices: 2712235--2712348 Score: 201
Period size: 51 Copynumber: 2.2 Consensus size: 51
2712225 CTGATCACAT
2712235 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
*
2712286 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
* *
2712337 TTGTCGCTTGTC
1 TTATCACTTGTC
2712349 GCTTGTCGCT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCAC
Found at i:2714393 original size:13 final size:13
Alignment explanation
Indices: 2714375--2714405 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2714365 ATATTATTAA
*
2714375 AAAATTTATTTTT
1 AAAATTTATTATT
2714388 AAAATTTATTATT
1 AAAATTTATTATT
2714401 AAAAT
1 AAAAT
2714406 AAAATTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AAAATTTATTATT
Found at i:2714470 original size:26 final size:27
Alignment explanation
Indices: 2714413--2714478 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
2714403 AATAAAATTG
*
2714413 AAATATTAAATTATTTATTATATTAACT
1 AAATATT-AATAATTTATTATATTAACT
*
2714441 --ATATTAATAATTTATTATA-TGACT
1 AAATATTAATAATTTATTATATTAACT
*
2714465 AAATATAAATAATT
1 AAATATTAATAATT
2714479 AAATATGTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
24 4 0.12
25 13 0.39
26 16 0.48
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (27 bp):
AAATATTAATAATTTATTATATTAACT
Found at i:2715687 original size:2 final size:2
Alignment explanation
Indices: 2715680--2715707 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2715670 AGATTATTAT
2715680 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2715708 GTTGAAGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2717324 original size:17 final size:18
Alignment explanation
Indices: 2717302--2717335 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2717292 CATTTAGTGA
2717302 AAAAAT-ATTATAAAATT
1 AAAAATAATTATAAAATT
*
2717319 AAAAATAATTCTAAAAT
1 AAAAATAATTATAAAAT
2717336 GAATTGTGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAATAATTATAAAATT
Found at i:2722334 original size:20 final size:19
Alignment explanation
Indices: 2722295--2722336 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
2722285 CAATTGAAAT
2722295 ATTTTAATATTTAAAATAA
1 ATTTTAATATTTAAAATAA
2722314 ATTTTAA-ATTTAACTAATAA
1 ATTTTAATATTTAA--AATAA
2722334 ATT
1 ATT
2722337 AATATGTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 7 0.33
20 8 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTTAATATTTAAAATAA
Found at i:2728197 original size:14 final size:14
Alignment explanation
Indices: 2728178--2728208 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
2728168 ATTGGTCCTA
2728178 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
2728192 ATTATTTTAGTTTT
1 ATTATTTTAGTTTT
2728206 ATT
1 ATT
2728209 TTGGTTTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (14 bp):
ATTATTTTAGTTTT
Found at i:2729919 original size:19 final size:19
Alignment explanation
Indices: 2729874--2729913 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
2729864 TATTTTGTGA
*
2729874 TTTATTTTTATTTCATCTT
1 TTTATTTTCATTTCATCTT
*
2729893 TTTATTTTCATTTTATCTT
1 TTTATTTTCATTTCATCTT
2729912 TT
1 TT
2729914 ACTTTTTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTATTTTCATTTCATCTT
Found at i:2731985 original size:2 final size:2
Alignment explanation
Indices: 2731978--2732004 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2731968 GCCCATTTCA
2731978 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
2732005 GATAATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2732835 original size:10 final size:10
Alignment explanation
Indices: 2732822--2732852 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
2732812 TAAGGGACAA
2732822 TATGATTGAT
1 TATGATTGAT
2732832 TATGATTGAT
1 TATGATTGAT
2732842 TATGATTGAT
1 TATGATTGAT
2732852 T
1 T
2732853 TCTGATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (10 bp):
TATGATTGAT
Found at i:2734669 original size:3 final size:3
Alignment explanation
Indices: 2734661--2734701 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
2734651 TACTGGTTAG
2734661 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
2734702 TTCGATTTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:2741397 original size:21 final size:22
Alignment explanation
Indices: 2741351--2741398 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
2741341 ATATATAAAT
2741351 TAATTTTTAATAATAAAAATAG
1 TAATTTTTAATAATAAAAATAG
*
2741373 -AATTTTT-TTAAT-AAAATAG
1 TAATTTTTAATAATAAAAATAG
2741392 CTAATTT
1 -TAATTT
2741399 ACTGTTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 7 0.30
20 4 0.17
21 12 0.52
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (22 bp):
TAATTTTTAATAATAAAAATAG
Found at i:2749253 original size:7 final size:7
Alignment explanation
Indices: 2749241--2749279 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
2749231 ATTAAAATTT
2749241 TTAAACA
1 TTAAACA
*
2749248 TTAAACC
1 TTAAACA
2749255 TT-AACA
1 TTAAACA
2749261 TTAAACA
1 TTAAACA
*
2749268 TTAAACC
1 TTAAACA
2749275 TTAAA
1 TTAAA
2749280 AAAACTGTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.18
7 23 0.82
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (7 bp):
TTAAACA
Found at i:2749264 original size:20 final size:20
Alignment explanation
Indices: 2749241--2749278 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
2749231 ATTAAAATTT
2749241 TTAAACATTAAACCTTAACA
1 TTAAACATTAAACCTTAACA
2749261 TTAAACATTAAACCTTAA
1 TTAAACATTAAACCTTAA
2749279 AAAAACTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (20 bp):
TTAAACATTAAACCTTAACA
Found at i:2749513 original size:25 final size:27
Alignment explanation
Indices: 2749484--2749540 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
2749474 ATGGTCTGAG
*
2749484 TGAACTG-TAAATATTTTGGGGGA-A-A
1 TGAACTGTTAAAGA-TTTGGGGGAGAGA
2749509 TGAACTGTTAAAGATTTGGGGGAGAGA
1 TGAACTGTTAAAGATTTGGGGGAGAGA
2749536 TGAAC
1 TGAAC
2749541 AGTCATCTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 16 0.57
26 6 0.21
27 6 0.21
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.28
Consensus pattern (27 bp):
TGAACTGTTAAAGATTTGGGGGAGAGA
Found at i:2750584 original size:30 final size:31
Alignment explanation
Indices: 2750543--2750608 Score: 84
Period size: 31 Copynumber: 2.1 Consensus size: 31
2750533 TGTTAATAAT
2750543 TAGACCTAAATT-TTAAAATTTAAAAAG-TACA
1 TAGACCTAAATTCTT-AAA-TTAAAAAGATACA
2750574 TAGA-CTAAATTCTTAAATTAAAAAGAATACA
1 TAGACCTAAATTCTTAAATTAAAAAG-ATACA
2750605 TAGA
1 TAGA
2750609 TTTATGATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
29 8 0.25
30 10 0.31
31 14 0.44
ACGTcount: A:0.53, C:0.09, G:0.08, T:0.30
Consensus pattern (31 bp):
TAGACCTAAATTCTTAAATTAAAAAGATACA
Found at i:2753259 original size:2 final size:2
Alignment explanation
Indices: 2753252--2753279 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2753242 TGTACGTAAA
2753252 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2753280 TTATTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2753347 original size:25 final size:23
Alignment explanation
Indices: 2753295--2753349 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
2753285 TATAAATAGT
2753295 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
2753318 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
2753343 AATAGTG
1 AATAGTG
2753350 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:2753431 original size:22 final size:22
Alignment explanation
Indices: 2753405--2753479 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
2753395 TATAAAATAG
*
2753405 ATATAAAAAAAATATGTACATA
1 ATATAAAAAAAATATATACATA
* *
2753427 ATATAGTGTAAAAAATACATACATA
1 ATATA---AAAAAAATATATACATA
**
2753452 ATATAATTAAAATATATACATA
1 ATATAAAAAAAATATATACATA
*
2753474 AGATAA
1 ATATAA
2753480 CATGTAGAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 23 0.55
25 19 0.45
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (22 bp):
ATATAAAAAAAATATATACATA
Found at i:2753449 original size:25 final size:24
Alignment explanation
Indices: 2753411--2753473 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 24
2753401 ATAGATATAA
** *
2753411 AAAAAATATGTACATAATATAGTGT
1 AAAAAATACATACATAATATAAT-T
2753436 AAAAAATACATACATAATATAATT
1 AAAAAATACATACATAATATAATT
2753460 AAAATATATACATA
1 AAAA-A-ATACATA
2753474 AGATAACATG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 5 0.15
25 21 0.64
26 7 0.21
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (24 bp):
AAAAAATACATACATAATATAATT
Found at i:2753496 original size:79 final size:82
Alignment explanation
Indices: 2753375--2753549 Score: 196
Period size: 79 Copynumber: 2.2 Consensus size: 82
2753365 ATGTTAAGAT
* * * * * *
2753375 ATATATAATATATACATATGTATAAAATAGATATAAAAAAAATATGTACATAATATAGTGTAAAA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAATATATAAATAATATAGTATAAAA
*
2753440 AATACATACATAATATA
66 AATACATACATAAAATA
* *
2753457 AT-TAAAATATATACATAAG-ATAACAT-G-TAGAAAACAAAATATATAAATAATATAGTATTAA
1 ATATAAAATATATACATAAGTATAAAATAGATAGAAAA-AAAATATATAAATAATATAGTATAAA
* *
2753518 AGATATATACATAAAATA
65 AAATACATACATAAAATA
* *
2753536 GTATAATATATATA
1 ATATAAAATATATA
2753550 TATATATATA
Statistics
Matches: 78, Mismatches: 13, Indels: 6
0.80 0.13 0.06
Matches are distributed among these distances:
78 6 0.08
79 39 0.50
80 16 0.21
81 15 0.19
82 2 0.03
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (82 bp):
ATATAAAATATATACATAAGTATAAAATAGATAGAAAAAAAATATATAAATAATATAGTATAAAA
AATACATACATAAAATA
Found at i:2753924 original size:16 final size:16
Alignment explanation
Indices: 2753886--2753924 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2753876 TCTCCAAAAA
*
2753886 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
2753902 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
2753918 AATAACT
1 AAAAACT
2753925 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:2754708 original size:14 final size:13
Alignment explanation
Indices: 2754661--2754700 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
2754651 TGATTTTTTT
2754661 TTAAAACACAGAAA
1 TTAAAA-ACAGAAA
2754675 TTAAAAAACAGAAA
1 TT-AAAAACAGAAA
*
2754689 CTAAAAACAGAA
1 TTAAAAACAGAA
2754701 TTTGAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 10 0.42
14 10 0.42
15 4 0.17
ACGTcount: A:0.68, C:0.12, G:0.07, T:0.12
Consensus pattern (13 bp):
TTAAAAACAGAAA
Found at i:2755121 original size:18 final size:18
Alignment explanation
Indices: 2755079--2755123 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 18
2755069 GAAAAATGAG
2755079 AATTTTT-AAAACACGAA
1 AATTTTTGAAAACACGAA
2755096 AA-TTTTGAAAACACGAA
1 AATTTTTGAAAACACGAA
2755113 AATTTTTGAAA
1 AATTTTTGAAA
2755124 CCTGAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.15
17 14 0.54
18 8 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
AATTTTTGAAAACACGAA
Found at i:2755692 original size:16 final size:15
Alignment explanation
Indices: 2755670--2755711 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
2755660 TATATAGGCA
*
2755670 TATAATAAAAGTATG
1 TATAATAAAAGTATC
2755685 TAATAATAATAA-TATC
1 T-ATAATAA-AAGTATC
2755701 TATAATAAAAG
1 TATAATAAAAG
2755712 AAAATATTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
14 2 0.09
15 8 0.35
16 11 0.48
17 2 0.09
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.33
Consensus pattern (15 bp):
TATAATAAAAGTATC
Found at i:2755747 original size:15 final size:17
Alignment explanation
Indices: 2755727--2755759 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
2755717 ATTAGGAAAC
2755727 ATACATAA-A-AAATAT
1 ATACATAATATAAATAT
2755742 ATACATAATATAAATAT
1 ATACATAATATAAATAT
2755759 A
1 A
2755760 ATATATACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (17 bp):
ATACATAATATAAATAT
Found at i:2756400 original size:17 final size:18
Alignment explanation
Indices: 2756354--2756401 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
2756344 GCCAAGGAGG
* *
2756354 GCCGGTCACCGGCCGATC
1 GCCGGCCACCGCCCGATC
* *
2756372 GTCGGCCGCCGCCCG-TC
1 GCCGGCCACCGCCCGATC
2756389 GCCGGCCACCGCC
1 GCCGGCCACCGCC
2756402 GGCCATCGCC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.06, C:0.52, G:0.33, T:0.08
Consensus pattern (18 bp):
GCCGGCCACCGCCCGATC
Found at i:2757890 original size:72 final size:72
Alignment explanation
Indices: 2757679--2758919 Score: 977
Period size: 72 Copynumber: 16.4 Consensus size: 72
2757669 GTGATCTGAA
*
2757679 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACCTCAGC
**
2757744 ATGTGAACCGAG
63 --GTGTCCCGAG
* * * *
2757756 GCTCAACTCACCTTTCGCAATATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAGCG
**
2757821 TGTCTTGAG
64 TGTCCCGAG
** * * **
2757830 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAGACAGAAATTGAAATTACCTCAATGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
2757895 TCTCGAG
66 TCCCGAG
*
2757902 GCTCAACTCTCCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
2757967 TCCCGAG
66 TCCCGAG
* *
2757974 GCTCAAGTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
2758039 TCCCGAG
66 TCCCGAG
*
2758046 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTAAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
2758111 TCCCGAG
66 TCCCGAG
* *
2758118 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAAAAATTGAAAATACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG-AAAACAGAAATTGAAATTACCTC
* **
2758183 AGCATGTCTTGAG
60 AGCGTGTCCCGAG
** *
2758196 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
2758261 TCCTGAG
66 TCCCGAG
** *
2758268 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTG-AAATTACCTCAG
*
2758333 CGTGTCCTGAG
62 CGTGTCCCGAG
* * * ** *
2758344 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAAATTGAAA--AGCAGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTG-A--TTTTTG-AAAACAGAAATTGAAATTACCTCAG
** *
2758407 ATTGAAATTACCTCAATG
62 CGTG----T-CC-CGA-G
* * *
2758425 TGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACAAACAGAAATTGAAATTA
1 -G-C-TCA---AC---TCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTA
*
2758490 CCTCAGCGTGTCCTGAG
56 CCTCAGCGTGTCCCGAG
** * * * * ***
2758507 GCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTGAAAA-ATAGATTGAAA-CACAAAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAATTAC-CTCA--G
* * *
2758570 ACAAT-ACCTCAGCG
62 -C-GTGTCC-C-GAG
* * * * * * *** * * * ****
2758584 TGCCCCGAGGCTCAACTCAC-C--TCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTGAAAT
1 -G-CTC-A-ACTCACCTCTCGCAATAT-G-AGT-TGA-TT--TTTGAAAACAGAAATTGA--AAT
2758646 TACCTCAGCGTGTCCCGAG
54 TACCTCAGCGTGTCCCGAG
* *
2758665 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAACAAAAATTGAAAATACCT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTG-AAAACAGAAATTGAAATTACCT
* **
2758730 CAGCATGTCTTGAG
59 CAGCGTGTCCCGAG
** * * *
2758744 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAGCTTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
2758809 TCCTGAG
66 TCCCGAG
** *
2758816 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTAACAACAGAAATTGAAAATTACCTC
1 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGAA-AACAGAAATTG-AAATTACCTC
*
2758881 AGCGTGTCCTGAG
60 AGCGTGTCCCGAG
*
2758894 GCTCAACTCACCTCTCGCAATGTGAG
1 GCTCAACTCACCTCTCGCAATATGAG
2758920 CAGAAATTGA
Statistics
Matches: 950, Mismatches: 146, Indels: 135
0.77 0.12 0.11
Matches are distributed among these distances:
71 2 0.00
72 402 0.42
73 33 0.03
74 50 0.05
75 14 0.01
76 83 0.09
77 85 0.09
78 113 0.12
79 56 0.06
80 11 0.01
81 21 0.02
82 6 0.01
83 10 0.01
84 10 0.01
85 1 0.00
86 4 0.00
87 21 0.02
89 6 0.01
90 22 0.02
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCCGAG
Found at i:2757975 original size:144 final size:144
Alignment explanation
Indices: 2757674--2759224 Score: 1643
Period size: 144 Copynumber: 10.4 Consensus size: 144
2757664 AGTGTGTGAT
* *
2757674 CTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-ACAGAAATTGAAATTACC
* * *
2757739 TCAGCATGTGAACCGAGGCTCAACTCACCTTTCGCAATATAAGTTGATTTTTTTGAAAACAGAAA
63 TCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAACAGAAA
* *
2757804 TTGAAAATACCTCAACGTGTC
124 TTGAAATTACCTCAGCGTGTC
* ** * *
2757825 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAGACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
** *
2757890 ATGTGTCTCGAGGCTCAACTCTCCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTGAAA
66 GCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
2757954 TTACCTCAGCGTGTC
130 TTACCTCAGCGTGTC
* * *
2757969 CCGAGGCTCAAGTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
*
2758034 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATTAAAA
66 GCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
2758098 TTACCTCAGCGTGTC
130 TTACCTCAGCGTGTC
* * *
2758113 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAAACAAAAATTGAAAAT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTG-AAAACAGAAATTGAAATT
* * ** *
2758178 ACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAA
60 ACCTCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAA
2758242 TTGAAATTACCTCAGCGTGTC
124 TTGAAATTACCTCAGCGTGTC
** *
2758263 CTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTAACAACAGAAATTGAAAATTAC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTG-AAATTAC
2758328 CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGAAAAATATAA
62 CTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTG-A-----TT------T-T--
**
2758393 ATTGAAAAGCAGAAATTGAAATTACCTCAATGTG-C
111 -TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTC
*
2758428 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAACAAACAGAAATTGAAATTACCT
1 C-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCT
** *
2758493 CAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTTGAAAAATAGATTGAA
64 CAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTT------T---TTGAA
* *
2758558 ACACAAAAATTGACAA-TACCTCAGCGTGCC
116 A-ACAGAAATTGA-AATTACCTCAGCGTGTC
* *
2758588 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
*
2758653 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAAACAAAAA
66 GCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTTG-AAAACAGAAA
* *
2758718 TTGAAAATACCTCAGCATGTC
124 TTGAAATTACCTCAGCGTGTC
* ** * *
2758739 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* ** *
2758804 GCTTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTTTTTAACAACAGAAATT
66 GCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAA-AACAGAAATT
2758869 GAAAATTACCTCAGCGTGTC
126 G-AAATTACCTCAGCGTGTC
*
2758889 CTGAGGCTCAACTCACCTCTCGC-A-AT--G-TGA-----G----CAGAAATTGAAAATACCTCA
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* * * *
2758940 ACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAA-ATAAATTGAAA
66 GCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAA
* *
2759003 ATACCTCAGCGTGCC
130 TTACCTCAGCGTGTC
*
2759018 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACATAAATTGAAATTACCTC
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAATTACCTC
2759083 AGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTGAAAGACAG
65 AGCGTGT--CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTTGAAA-ACAG
* *
2759148 AAATTGAAAATACCTCAACGTGTC
121 AAATTGAAATTACCTCAGCGTGTC
* * *
2759172 TTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTG-AAACATAAATT
1 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAAATT
2759225 AAAACACAAA
Statistics
Matches: 1221, Mismatches: 103, Indels: 150
0.83 0.07 0.10
Matches are distributed among these distances:
129 39 0.03
130 8 0.01
131 4 0.00
132 7 0.01
133 1 0.00
134 3 0.00
136 53 0.04
139 1 0.00
140 1 0.00
144 224 0.18
145 5 0.00
146 70 0.06
147 17 0.01
148 70 0.06
149 34 0.03
150 165 0.14
151 153 0.13
152 12 0.01
153 12 0.01
154 58 0.05
155 6 0.00
158 58 0.05
159 70 0.06
160 16 0.01
161 1 0.00
162 2 0.00
163 49 0.04
164 17 0.01
165 10 0.01
166 55 0.05
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (144 bp):
CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAT
TACCTCAGCGTGTC
Found at i:2758488 original size:73 final size:73
Alignment explanation
Indices: 2758402--2758541 Score: 219
Period size: 73 Copynumber: 1.9 Consensus size: 73
2758392 AATTGAAAAG
*
2758402 CAGAAATTGAAATTACCTCAATGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAGAAATTGAAATTACCTCAACGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
2758466 TTTAACAAA
65 TTTAACAAA
* ** *
2758475 CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTT
1 CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
2758540 TT
66 TT
2758542 TGAAAAATAG
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 59 0.97
74 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (73 bp):
CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTAACAAA
Found at i:2758644 original size:86 final size:86
Alignment explanation
Indices: 2758478--2758636 Score: 243
Period size: 86 Copynumber: 1.9 Consensus size: 86
2758468 TAACAAACAG
* * ** *
2758478 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
2758543 GAAAAATAGATTGAAACACAA
66 GAAAAATAGATTGAAACACAA
2758564 AAATTGACAA-TACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
1 AAATTGA-AATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
2758627 TG-AAAATAGA
65 TGAAAAATAGA
2758637 AATTGAAATT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
84 8 0.12
85 6 0.09
86 51 0.76
87 2 0.03
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (86 bp):
AAATTGAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAATAGATTGAAACACAA
Found at i:2758783 original size:151 final size:146
Alignment explanation
Indices: 2758394--2759224 Score: 917
Period size: 151 Copynumber: 5.6 Consensus size: 146
2758384 AAAATATAAA
* **
2758394 TTGAAAAGCAGAAATTGAAATTACCTCAATGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-CAGAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATG
* **
2758458 AGTTGATTTTTAACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTC
64 AGTTGATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
*
2758523 GTAATATGAGTTGATTTTTTGAAAAAT
128 GCAATATGAGTTGA--TTTT------T
* * * *
2758550 AGATTGAAACACAAAAATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATA
1 ---TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
* *
2758615 TGAGTTGATTTTTGAAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCT
62 TGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
2758680 CGCAATATGAGTTGATTTTTTTTT
127 CGCAATATGAGTTGA----TTTTT
* * * **
2758704 TTGAAAAACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * * **
2758769 GTTGAATTTTGAAAATAGAAATTGAAATTACCTCAGCTTGTCCTGAGGCTCAACTCATTTCTCGC
65 GTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
2758834 AATATGAGTTGATTTTTTT
130 AATATGAGTTGA--TTTTT
*
2758853 TTTAACAACAGAAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC-A-AT-
1 TTGAA-AACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * * *
2758915 -G-TGA-----G----CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCG
64 AGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCG
2758969 CAATATGAGTTGA--TTT
129 CAATATGAGTTGATTTTT
* *
2758985 TTGAAAA-ATAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
2759049 TTGATTTTTGACAAACATAAATTGAAATTACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTC
66 TTGATTTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTC
2759114 GCAATATGAGTTGATTTTTTTTT
128 GCAATATGAGTTGA----TTTTT
* * *
2759137 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
2759202 GTTGATTTTTTG-AAACATAAATT
65 GTTGA-TTTTTGAAAACAGAAATT
2759225 AAAACACAAA
Statistics
Matches: 588, Mismatches: 51, Indels: 72
0.83 0.07 0.10
Matches are distributed among these distances:
129 36 0.06
130 12 0.02
131 4 0.01
132 7 0.01
133 1 0.00
134 3 0.01
136 54 0.09
139 1 0.00
140 1 0.00
144 23 0.04
145 3 0.01
146 35 0.06
148 4 0.01
149 24 0.04
150 33 0.06
151 126 0.21
152 12 0.02
153 12 0.02
154 57 0.10
155 6 0.01
158 60 0.10
159 65 0.11
160 9 0.02
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (146 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTT
Found at i:2758952 original size:58 final size:59
Alignment explanation
Indices: 2758861--2758977 Score: 191
Period size: 58 Copynumber: 2.0 Consensus size: 59
2758851 TTTTTAACAA
* *
2758861 CAGAAATTGAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATGTGAG
1 CAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
2758920 CAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAG
1 CAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
2758978 TTGATTTTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
58 41 0.76
59 13 0.24
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.25
Consensus pattern (59 bp):
CAGAAATTGAAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
Found at i:2759039 original size:71 final size:73
Alignment explanation
Indices: 2758923--2759228 Score: 415
Period size: 71 Copynumber: 4.1 Consensus size: 73
2758913 ATGTGAGCAG
* *
2758923 AAATTGAAAATACCTCAACGTGTCTTGAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
2758987 GAAAA-AT
66 GAAAACAT
* *
2758994 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
2759058 GACAAACAT
66 GA-AAACAT
* *
2759067 AAATTGAAATTACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
*
2759132 TTTTTTTGAAAGACAG
60 -TTTTTTGAAA-ACAT
* *
2759148 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
2759213 G-AAACAT
66 GAAAACAT
2759220 AAATT-AAAA
1 AAATTGAAAA
2759229 CACAAAAATT
Statistics
Matches: 212, Mismatches: 12, Indels: 22
0.86 0.05 0.09
Matches are distributed among these distances:
71 66 0.31
72 11 0.05
73 25 0.12
74 7 0.03
75 36 0.17
79 34 0.16
80 2 0.01
81 31 0.15
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (73 bp):
AAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAACAT
Found at i:2759293 original size:86 final size:89
Alignment explanation
Indices: 2759174--2759387 Score: 253
Period size: 89 Copynumber: 2.4 Consensus size: 89
2759164 AACGTGTCTT
*
2759174 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTG-AAACATAAATT-AAAACACAAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAA-ACAAAAA
* * *
2759237 TTG-ACAATACCTCAG-CGT-A-CCCC
65 TCGTA-AATACCTC-GTCATGAGACCC
* ***
2759260 GAGGCTCAACTCACCTCTCGCAATATGAATTGA-TTTTTGAAAAACATAAATTGAAAAATGGAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACATAAATTGAAAAACAAAAA
*
2759324 TCGTAAATACCTCGTCATGAGACCT
65 TCGTAAATACCTCGTCATGAGACCC
*
2759349 GAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
2759388 TTTATGAACA
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
85 6 0.06
86 32 0.29
87 27 0.25
88 6 0.06
89 33 0.30
90 5 0.05
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (89 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACATAAATTGAAAAACAAAAAT
CGTAAATACCTCGTCATGAGACCC
Found at i:2761991 original size:39 final size:39
Alignment explanation
Indices: 2761860--2762050 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
2761850 GGATATAACG
* ** **
2761860 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
2761900 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
2761940 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
2761978 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
2762018 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
2762051 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:2761995 original size:78 final size:80
Alignment explanation
Indices: 2761900--2762050 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
2761890 GGTTATAGCG
* * * *
2761900 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
2761962 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
2761978 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
2762043 AGCCCGGA
66 AGCCCGGA
2762051 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:2770017 original size:39 final size:39
Alignment explanation
Indices: 2769886--2770076 Score: 172
Period size: 40 Copynumber: 4.8 Consensus size: 39
2769876 GGATATAACG
* ** **
2769886 ACTCGCTCAAATGCCTTCGGGACGAAGCCCGG-TTATAGCG
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATT-TAGTA
* *
2769926 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCAC-AATGCCTTCGGGACTTAGCCCGGATTTAGTA
* *
2769966 ACTTGCACAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
2770004 ACTCGCACGAATGCCTTC-GGATCCTAGTCCGGATATAGTC
1 ACTCGCAC-AATGCCTTCGGGA-CTTAGCCCGGATTTAGTA
* *
2770044 ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAATGCCTTCGGGACTTAGCCCGGA
2770077 CATCATTCGA
Statistics
Matches: 124, Mismatches: 21, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 24 0.19
39 21 0.17
40 69 0.56
41 10 0.08
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
ACTCGCACAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:2770021 original size:78 final size:80
Alignment explanation
Indices: 2769926--2770076 Score: 209
Period size: 78 Copynumber: 1.9 Consensus size: 80
2769916 GGTTATAGCG
* * * *
2769926 ACTCGCACGAATGCCTTCGGGA-CTTAACCCGGGTTTAGTAACTT-GCACAATGCCTTCGGG-CT
1 ACTCGCACGAATGCCTTC-GGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACT
2769988 TAGCCCGGATTTATTA
65 TAGCCCGGATTTATTA
** *
2770004 ACTCGCACGAATGCCTTCGGATCCTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
2770069 AGCCCGGA
66 AGCCCGGA
2770077 CATCATTCGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
77 3 0.05
78 34 0.54
79 15 0.24
80 11 0.17
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTCGCACGAATGCCTTCGGATCCTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTT
AGCCCGGATTTATTA
Found at i:2775408 original size:22 final size:24
Alignment explanation
Indices: 2775350--2775417 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
2775340 ATAGATATAA
* *
2775350 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
2775374 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
2775398 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
2775418 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:2775885 original size:16 final size:16
Alignment explanation
Indices: 2775847--2775885 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2775837 ATCTCCAAAA
*
2775847 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
2775863 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
2775879 AATAACT
1 AAAAACT
2775886 CTGCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:2776125 original size:29 final size:30
Alignment explanation
Indices: 2776041--2776132 Score: 118
Period size: 28 Copynumber: 3.2 Consensus size: 30
2776031 TAGGTACAAG
* *
2776041 TGGTGGTGGAGCAAGTGTGGCTAGTGAAGT
1 TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
* *
2776071 AGGTGGTGGAGCAA--GTGGCTAGTGGAGT
1 TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
*
2776099 TGGTGAT-GAGCAAGTGTGGCTAATGGAGT
1 TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
2776128 TGGTG
1 TGGTG
2776133 GTGGCAAATG
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
27 6 0.11
28 18 0.33
29 18 0.33
30 13 0.24
ACGTcount: A:0.21, C:0.07, G:0.47, T:0.26
Consensus pattern (30 bp):
TGGTGATGGAGCAAGTGTGGCTAGTGGAGT
Found at i:2777011 original size:22 final size:22
Alignment explanation
Indices: 2776977--2777021 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
2776967 TTCCCCGCTC
2776977 CTTTCTTTCTTCTTTCTCCCTT
1 CTTTCTTTCTTCTTTCTCCCTT
* * *
2776999 CTTTTTTTTTTCTTTCTCTCTT
1 CTTTCTTTCTTCTTTCTCCCTT
2777021 C
1 C
2777022 AAAATGATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (22 bp):
CTTTCTTTCTTCTTTCTCCCTT
Found at i:2777820 original size:37 final size:37
Alignment explanation
Indices: 2777778--2777877 Score: 91
Period size: 37 Copynumber: 2.6 Consensus size: 37
2777768 CCTAAATTTT
2777778 CTTTTATTGTAGATATTATTATTATTATTAT-TACATA
1 CTTTTATT-TAGATATTATTATTATTATTATGTACATA
*
2777815 CTTTTATTATATGCATA-TATATATGTATTTTTATGTACATA
1 CTTTTATT-TA-G-ATATTAT-TAT-TATTATTATGTACATA
*
2777856 -TTATTATTT-TATATTATTATTA
1 CTT-TTATTTAGATATTATTATTA
2777878 CCAAATATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
36 2 0.04
37 16 0.30
38 7 0.13
39 6 0.11
40 11 0.21
41 11 0.21
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (37 bp):
CTTTTATTTAGATATTATTATTATTATTATGTACATA
Found at i:2779572 original size:12 final size:12
Alignment explanation
Indices: 2779552--2779587 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
2779542 ATTCATTTGA
*
2779552 CATTTATGCATT
1 CATTCATGCATT
2779564 CATTCATGCATT
1 CATTCATGCATT
*
2779576 CATTCATTCATT
1 CATTCATGCATT
2779588 GCATATCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:2782898 original size:18 final size:18
Alignment explanation
Indices: 2782867--2782909 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
2782857 ATTTGATGCT
2782867 TATATGTATATATATA-TA
1 TATAT-TATATATATAGTA
2782885 TATATTATATTATATAGTA
1 TATATTATA-TATATAGTA
2782904 T-TATTA
1 TATATTA
2782910 ATAGCTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.17
18 16 0.70
19 3 0.13
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (18 bp):
TATATTATATATATAGTA
Found at i:2782923 original size:3 final size:3
Alignment explanation
Indices: 2782887--2782964 Score: 97
Period size: 3 Copynumber: 25.7 Consensus size: 3
2782877 TATATATATA
* *
2782887 TAT TA- TAT TAT ATAG TAT TAT TAA TAGCT T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TA--T TAT TAT TAT TAT TAT TAT
2782933 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
2782965 GTGTATATTT
Statistics
Matches: 66, Mismatches: 4, Indels: 10
0.82 0.05 0.12
Matches are distributed among these distances:
2 4 0.06
3 59 0.89
4 2 0.03
5 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2783080 original size:3 final size:3
Alignment explanation
Indices: 2783066--2783104 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
2783056 TGTATTTCTA
* *
2783066 TAT TAC TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2783105 ATATAGTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2783290 original size:12 final size:12
Alignment explanation
Indices: 2783273--2783297 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2783263 TATTATGTTT
2783273 TTTTTAATACCA
1 TTTTTAATACCA
2783285 TTTTTAATACCA
1 TTTTTAATACCA
2783297 T
1 T
2783298 GCATGTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTTAATACCA
Found at i:2790820 original size:76 final size:76
Alignment explanation
Indices: 2790726--2790866 Score: 228
Period size: 76 Copynumber: 1.9 Consensus size: 76
2790716 TGATGTTTTA
* * *
2790726 TTTCAAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAA
2790791 TTTTTTGTATG
66 TTTTTTGTATG
** *
2790802 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATGCGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAA
2790867 AAAAATCAAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 59 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (76 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTGTCAA
TTTTTTGTATG
Found at i:2790895 original size:61 final size:61
Alignment explanation
Indices: 2790806--2790927 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
2790796 TGTATGTTTC
* ** *
2790806 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATGCGCTGAGGTATTTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAA
2790867 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAA
2790928 TTTCTGTTGT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (61 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAA
Found at i:2790995 original size:137 final size:137
Alignment explanation
Indices: 2790730--2791003 Score: 383
Period size: 137 Copynumber: 2.0 Consensus size: 137
2790720 GTTTTATTTC
* * * *
2790730 AAAATTCAATTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTGTCAATTTT
* *** * ** *
2790795 TTGTATGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATGCGCTGAGGTA
66 CTGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTA
2790860 TTTTCAA
131 TTTTCAA
2790867 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATT-TCAA-TT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGT-ATTGTCAATTT
*
2790930 TCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
65 TCTGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACACGCCGAG
2790994 GTATTTTCAA
128 GTATTTTCAA
2791004 TTTCCGTTTT
Statistics
Matches: 121, Mismatches: 13, Indels: 6
0.86 0.09 0.04
Matches are distributed among these distances:
135 42 0.35
136 6 0.05
137 70 0.58
138 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (137 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTGTCAATTTT
CTGTATGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACGCCGAGGTA
TTTTCAA
Found at i:2791007 original size:76 final size:74
Alignment explanation
Indices: 2790863--2791007 Score: 227
Period size: 74 Copynumber: 1.9 Consensus size: 74
2790853 TGAGGTATTT
* *
2790863 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTTCAA
1 TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGACACGCCGAGGTAATTTCAA
2790928 TTTCTGTTG
66 TTTCTGTTG
* * *
2790937 TCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGG--ACACGCCGAGGTAATTTC
2791002 AATTTC
64 AATTTC
2791008 CGTTTTTCAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 42 0.66
76 22 0.34
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (74 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTAAGCCTCAGGACACGCCGAGGTAATTTCAA
TTTCTGTTG
Found at i:2791051 original size:92 final size:88
Alignment explanation
Indices: 2790922--2791097 Score: 237
Period size: 92 Copynumber: 2.0 Consensus size: 88
2790912 GCTGAGGTAA
** *
2790922 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG--ACA
* *
2790987 CGCCGAGGTATTTTCAATTTCCGTT
64 CACCGAGGTAATTTCAATTTCCGTT
*
2791012 TTTCAATTTCTGCCTT-TCAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTCAATTTCTG--TTGTC-AAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGAC
*
2791076 ACACTGAGGTAATTTCAATTTC
63 ACACCGAGGTAATTTCAATTTC
2791098 TGTTGTCAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
90 33 0.43
91 2 0.03
92 41 0.54
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (88 bp):
TTTCAATTTCTGTTGTCAAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGACACA
CCGAGGTAATTTCAATTTCCGTT
Found at i:2791137 original size:74 final size:76
Alignment explanation
Indices: 2791012--2791173 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 76
2791002 AATTTCCGTT
*
2791012 TTTCAATTTCTGCCTTTCAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTCAATTTCTG-CTTTCAAAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
*
2791076 ACACTGAGGTAA
65 ACACCGAGGTAA
** *
2791088 TTTCAATTTCTG-TTGTC-AAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGCTT-TCAAAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
*
2791151 CACACCGAGGTAT
64 CACACCGAGGTAA
2791164 TTTCAATTTC
1 TTTCAATTTC
2791174 CGTTTTTCAA
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
74 41 0.53
75 2 0.03
76 34 0.44
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (76 bp):
TTTCAATTTCTGCTTTCAAAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
CACCGAGGTAA
Found at i:2791139 original size:166 final size:166
Alignment explanation
Indices: 2790861--2791203 Score: 618
Period size: 166 Copynumber: 2.1 Consensus size: 166
2790851 GCTGAGGTAT
** *
2790861 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTAATTT
1 TTTCAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACACTGAGGTAATTT
*
2790925 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGC
66 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACAC
2790990 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
131 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
*
2791026 TTTCAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTT
1 TTTCAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACACTGAGGTAATTT
2791091 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACAC
66 CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACAC
*
2791156 CGAGGTATTTTCAATTTCCGTTTTTCAATTTTTGCC
131 CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
2791192 TTT-AAAAAAAAA
1 TTTCAAAAAAAAA
2791204 GGCGGTGGCC
Statistics
Matches: 171, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
165 13 0.08
166 158 0.92
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (166 bp):
TTTCAAAAAAAAAAAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACACTGAGGTAATTT
CAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACAC
CGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGCC
Found at i:2791868 original size:2 final size:2
Alignment explanation
Indices: 2791863--2791903 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
2791853 TAAATACTAT
*
2791863 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2791904 TTTAAATACC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2792664 original size:14 final size:14
Alignment explanation
Indices: 2792645--2792673 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
2792635 GCTAATACCT
2792645 TCCTCGCGCGTAAC
1 TCCTCGCGCGTAAC
2792659 TCCTCGCGCGTAAC
1 TCCTCGCGCGTAAC
2792673 T
1 T
2792674 GACTCCCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.41, G:0.21, T:0.24
Consensus pattern (14 bp):
TCCTCGCGCGTAAC
Found at i:2793055 original size:16 final size:15
Alignment explanation
Indices: 2793034--2793085 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
2793024 GTTGTTTTTA
2793034 TTTTAAAATTGATTAT
1 TTTTAAAATT-ATTAT
*
2793050 TTTTAATAAATATTAT
1 TTTTAA-AATTATTAT
2793066 TTTTAAAAATTATTAT
1 TTTT-AAAATTATTAT
2793082 TTTT
1 TTTT
2793086 CACTCACATA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 27 0.84
17 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (15 bp):
TTTTAAAATTATTAT
Found at i:2794396 original size:12 final size:12
Alignment explanation
Indices: 2794379--2794403 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2794369 GCATTTCATT
2794379 TCATCAATCAAG
1 TCATCAATCAAG
2794391 TCATCAATCAAG
1 TCATCAATCAAG
2794403 T
1 T
2794404 TGCTTAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.28
Consensus pattern (12 bp):
TCATCAATCAAG
Found at i:2795008 original size:16 final size:17
Alignment explanation
Indices: 2794980--2795011 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2794970 ATTGAATTTT
2794980 AATTTATTTTATCTATC
1 AATTTATTTTATCTATC
2794997 AATTTA-TTTATCTAT
1 AATTTATTTTATCTAT
2795012 ACATTGTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTATTTTATCTATC
Found at i:2799285 original size:5 final size:5
Alignment explanation
Indices: 2799275--2799301 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
2799265 TCATATGTCT
2799275 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
2799302 TACAACACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:2799592 original size:20 final size:20
Alignment explanation
Indices: 2799570--2799607 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2799560 ATATTTAAAA
*
2799570 AAAAT-TAAAAATATATTTT
1 AAAATATAAAAATAAATTTT
2799589 AAAATATAAAAATAAATTT
1 AAAATATAAAAATAAATTT
2799608 AAGTCTAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATATAAAAATAAATTTT
Found at i:2799608 original size:19 final size:19
Alignment explanation
Indices: 2799570--2799609 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
2799560 ATATTTAAAA
*
2799570 AAAATTAAAAATATATTTT
1 AAAATTAAAAATATAATTT
2799589 AAAATATAAAAATA-AATTT
1 AAAAT-TAAAAATATAATTT
2799608 AA
1 AA
2799610 GTCTAGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATTAAAAATATAATTT
Found at i:2799863 original size:24 final size:24
Alignment explanation
Indices: 2799817--2799864 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2799807 TTCAAGTTTT
* * *
2799817 AAAATTTGAATTTAGTATCAATTA
1 AAAATTTGAAATTAATATAAATTA
*
2799841 AAAATTTGAAATTAATTTAAATTA
1 AAAATTTGAAATTAATATAAATTA
2799865 TCTGTCGTGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (24 bp):
AAAATTTGAAATTAATATAAATTA
Found at i:2805648 original size:47 final size:47
Alignment explanation
Indices: 2805539--2805649 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
2805529 CCGGGATAAG
*
2805539 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
* * * *
2805586 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTA-TAGTA
2805633 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
2805650 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:2806410 original size:4 final size:4
Alignment explanation
Indices: 2806401--2806429 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
2806391 CCCTTTTCTA
2806401 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
2806430 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:2814086 original size:18 final size:18
Alignment explanation
Indices: 2814044--2814249 Score: 74
Period size: 18 Copynumber: 11.4 Consensus size: 18
2814034 TAGGGGTGAT
2814044 AATAATAATAATAATATA
1 AATAATAATAATAATATA
*
2814062 AACAATAATACAT-ATATA
1 AATAATAATA-ATAATATA
* * * *
2814080 TATAATAATAGTAGTTAGA
1 AATAATAATAATA-ATATA
*
2814099 AATAA-AA-AATAATAGA
1 AATAATAATAATAATATA
* * *
2814115 AGTAACAATAATGATAGT-
1 AATAATAATAATAATA-TA
*
2814133 AATAAT-ATAAATAAATATG
1 AATAATAAT-AAT-AATATA
* * ***
2814152 GAGAGGGCATATATAATAT-
1 AATA-ATAATA-ATAATATA
2814171 AATAATAAT-ATAA-AT-
1 AATAATAATAATAATATA
*
2814186 AATAAT-AT-ATACATGAGA
1 AATAATAATAATA-AT-ATA
2814204 AATAATAATAATAATATA
1 AATAATAATAATAATATA
* *
2814222 AATAATAGTAAAAATAATAA
1 AATAATAATAATAAT-AT-A
2814242 AATAATAA
1 AATAATAA
2814250 AACAAAGCTC
Statistics
Matches: 139, Mismatches: 29, Indels: 38
0.67 0.14 0.18
Matches are distributed among these distances:
14 5 0.04
15 9 0.06
16 12 0.09
17 9 0.06
18 61 0.44
19 22 0.16
20 17 0.12
21 4 0.03
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (18 bp):
AATAATAATAATAATATA
Found at i:2814177 original size:3 final size:3
Alignment explanation
Indices: 2814164--2814249 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
2814154 GAGGGCATAT
2814164 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
2814208 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2814250 AACAAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:2814188 original size:12 final size:12
Alignment explanation
Indices: 2814164--2814246 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
2814154 GAGGGCATAT
2814164 ATAATAT-AATA
1 ATAATATAAATA
2814175 ATAATATAAATA
1 ATAATATAAATA
2814187 ATAATATATACATGA
1 ATAATATA-A-AT-A
2814202 GA-AATA-ATAATA
1 -ATAATATA-AATA
2814214 ATAATATAAATA
1 ATAATATAAATA
* *
2814226 ATAGTAAAAATA
1 ATAATATAAATA
*
2814238 ATAAAATAA
1 ATAATATAA
2814247 TAAAACAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:2814208 original size:21 final size:18
Alignment explanation
Indices: 2814169--2814249 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
2814159 CATATATAAT
*
2814169 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
2814187 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
2814208 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
2814226 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
2814243 ATAATAA
1 ATAATAA
2814250 AACAAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:2814237 original size:27 final size:27
Alignment explanation
Indices: 2814164--2814250 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
2814154 GAGGGCATAT
* *
2814164 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
2814190 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
2814214 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
2814241 A-AATAATAAA
1 ATAAT-ATAAA
2814251 ACAAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:2814614 original size:21 final size:20
Alignment explanation
Indices: 2814581--2814621 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
2814571 CTTCTTTCCA
*
2814581 AAAAAACAAAAAACACCTCC
1 AAAAAACAAAAAAAACCTCC
2814601 AAAAAACAAAAAAAAACCTCC
1 AAAAAAC-AAAAAAAACCTCC
2814622 TCCAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.68, C:0.27, G:0.00, T:0.05
Consensus pattern (20 bp):
AAAAAACAAAAAAAACCTCC
Found at i:2814643 original size:23 final size:22
Alignment explanation
Indices: 2814577--2814677 Score: 82
Period size: 23 Copynumber: 4.5 Consensus size: 22
2814567 CAACCTTCTT
*
2814577 TCCAAAA-AAACAAAAAA-CACC
1 TCCAAAACAAA-AAAAAACCTCC
2814598 TCCAAAAAACAAAAAAAAACCTCC
1 TCC--AAAACAAAAAAAAACCTCC
* *
2814622 TCCAAAACAAAGAACAATCCTCC
1 TCCAAAACAAA-AAAAAACCTCC
** *
2814645 TCCAAAA-AACCAAAAACCCCC
1 TCCAAAACAAAAAAAAACCTCC
2814666 TCCTAAAACAAA
1 TCC-AAAACAAA
2814678 GTCTTGAATG
Statistics
Matches: 64, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
21 13 0.20
22 14 0.22
23 28 0.44
24 9 0.14
ACGTcount: A:0.57, C:0.33, G:0.01, T:0.09
Consensus pattern (22 bp):
TCCAAAACAAAAAAAAACCTCC
Found at i:2815212 original size:44 final size:44
Alignment explanation
Indices: 2815129--2815890 Score: 566
Period size: 44 Copynumber: 17.3 Consensus size: 44
2815119 TGCTTCACTG
* * * * * *
2815129 TAAGCACAGGAATGTCAGATTTGCTATCTTCGA-TCTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACT-TGTTCCCTA
* *
2815173 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * * * *
2815217 TAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTAT-TTTCAACTTG-TTCCCTA
* * * * * *
2815261 TAAGCACAGGAATGTCAGATCTGTTATCTTT-GATTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTAT-TTTCAACTTGTTCCCTA
* *
2815305 TAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** ** * * * *
2815349 TAAGCACAGGGATGCC-ACGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAATCTGCTAT-TTTCAACTTG-TTCCCTA
* * * * * *
2815393 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
*
2815437 TAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * * * *
2815481 TAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGTTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTATTTTCAACT-TG-TTCCCTA
* * * * * * *
2815525 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
*
2815569 TAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * * * *
2815613 TAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCTGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTATTTTCAACT-TG-TTCCCTA
* * * * * *
2815657 TAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
*
2815701 TAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
** * * * *
2815745 TAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-TGCTTCACTG
1 TAAGCACAGGGATGCCAAAT-CTGCTAT-TTTCAACTTG-TTCCCTA
* * ** * * *
2815789 TAAGCACAGGAATGTCAGGTCTGCTATCTTCGATTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
*
2815833 TAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTA
1 TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
2815877 TAAGCACAGGGATG
1 TAAGCACAGGGATG
2815891 TCATGCTGAA
Statistics
Matches: 560, Mismatches: 128, Indels: 60
0.75 0.17 0.08
Matches are distributed among these distances:
42 10 0.02
43 44 0.08
44 445 0.79
45 52 0.09
46 9 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
TAAGCACAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCCTA
Found at i:2815346 original size:132 final size:132
Alignment explanation
Indices: 2815109--2815952 Score: 1562
Period size: 132 Copynumber: 6.4 Consensus size: 132
2815099 GATATCCACT
* *
2815109 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATTTGCTATCTTCGATCTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
2815174 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2815239 AA
131 AA
* *
2815241 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTTGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
* *
2815306 AAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCACGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2815371 AA
131 AA
2815373 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
2815438 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2815503 AA
131 AA
* * *
2815505 ATCTTCGATCTGTTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCCAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
2815570 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2815635 AA
131 AA
*
2815637 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
2815702 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2815767 AA
131 AA
*
2815769 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGGTCTGCTATCTTCGATTTGTTCCCTAT
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
*
2815834 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCATGCTG
66 AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
2815899 AA
131 AA
*
2815901 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
2815953 GTCTACTCCT
Statistics
Matches: 693, Mismatches: 19, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 693 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (132 bp):
ATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTTGTTCCCTAT
AAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCATGCTG
AA
Found at i:2816114 original size:68 final size:68
Alignment explanation
Indices: 2816005--2816203 Score: 303
Period size: 68 Copynumber: 2.9 Consensus size: 68
2815995 TCTTCTTCCA
* * * *
2816005 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
2816070 -TT
66 CCT
* *
2816072 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
2816137 TCCT
65 TCCT
*
2816141 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCA-GAGGAAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
2816204 AATTTGTAAT
Statistics
Matches: 120, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
67 9 0.08
68 110 0.92
69 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:2816333 original size:43 final size:43
Alignment explanation
Indices: 2816275--2816904 Score: 425
Period size: 43 Copynumber: 14.4 Consensus size: 43
2816265 CTATTTCCCA
* **
2816275 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * *
2816318 ACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * * *
2816363 ACTGCTTAGGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
** * ** ** *
2816406 ACTGCTT-GGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
*
2816449 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
2816494 ACTGCTTAGGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
* ** * ** ** *
2816537 ATTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
*
2816581 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
2816626 ACTGCTTAGGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
* ** * ** ** *
2816669 ATTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
** ** *
2816713 ACTGCTTAGGGGGTTAAGATCT-TCATCTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGATCTGT-AAATTCGGCCTGTTACCCT
* * * *
2816756 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * * * * ** *
2816798 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCT
1 ACTGCTTAGGGGGTTAAGA-TC-T-GTAAATTCGGCCTGTTACCCT
*
2816842 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
** *
2816887 GTTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGGGTTAAG
2816905 GCTTGTGAAT
Statistics
Matches: 459, Mismatches: 101, Indels: 52
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.00
42 38 0.08
43 177 0.39
44 99 0.22
45 143 0.31
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (43 bp):
ACTGCTTAGGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
Found at i:2816608 original size:132 final size:132
Alignment explanation
Indices: 2816308--2816916 Score: 901
Period size: 132 Copynumber: 4.6 Consensus size: 132
2816298 TAAATTCAAC
* * *
2816308 CTGTTACCCTACTGGTTAGGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
2816373 GGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTT-GGGGGTTAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
2816437 AT
131 AT
2816439 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
2816504 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
2816569 AT
131 AT
2816571 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
2816636 GGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTATTGCTTAGGGGGTTAAAGCCCATCATCTTCG
66 GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
2816701 AT
131 AT
* * *
2816703 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCT-T-CATCTTC-GATCTGTTTCCCTACTGCTTAG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAG
* * * * * * * * *
2816765 GGAGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTC
65 GGGGTTAAGGCT-TGTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATC
2816826 TTCGAT
127 TTCGAT
**
2816832 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTGTTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* *
2816897 GGCTTAAGGCTTGTGAATTC
66 GGGTTAAGGCTTGTAAATTC
2816917 ACTGATTCTA
Statistics
Matches: 437, Mismatches: 31, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
128 10 0.02
129 68 0.16
130 33 0.08
131 128 0.29
132 198 0.45
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (132 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
GGGTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
AT
Found at i:2818232 original size:44 final size:45
Alignment explanation
Indices: 2818142--2818270 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
2818132 GACAGAACGA
*
2818142 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
2818188 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
2818232 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
2818271 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:2825616 original size:44 final size:45
Alignment explanation
Indices: 2825526--2825654 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
2825516 GACAGAACGA
*
2825526 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
2825572 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
2825616 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
2825655 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Done.