Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr06 132263754
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 132263754
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 372 characters in sequence are not A, C, G, or T
File 93 of 433
Found at i:28027070 original size:68 final size:64
Alignment explanation
Indices: 28026998--28027204 Score: 222
Period size: 66 Copynumber: 3.2 Consensus size: 64
28026988 TATCATGTGT
28026998 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATG
1 ACAAGAGAGCTACGAG--A-TAT-ATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATG
28027063 TAG
62 TAG
* * * * * *
28027066 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGT-CTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACTA--T-ATGTACACCATGT
28027130 AG
63 AG
* * * * *
28027132 ACAAGACAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTATGTGTGCACCATGT-G
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATGTAG
28027194 TACAAGAGAGC
1 -ACAAGAGAGC
28027205 CAAAATTATG
Statistics
Matches: 116, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 21 0.18
64 22 0.19
65 23 0.20
66 34 0.29
68 15 0.13
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATGTAG
Found at i:28031029 original size:29 final size:30
Alignment explanation
Indices: 28030996--28031055 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
28030986 TTCCCGAGCC
28030996 TAGGGGAAAAAGTGTAAATATG-CAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCCAAAGTT
* * * *
28031025 TAGGGGTAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCCAAAGTT
28031055 T
1 T
28031056 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCCAAAGTT
Found at i:28031629 original size:68 final size:64
Alignment explanation
Indices: 28031564--28031770 Score: 195
Period size: 66 Copynumber: 3.2 Consensus size: 64
28031554 CATCATGTGT
28031564 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATG
1 ACAAGAGAGCTACGAG--A-TAT-ATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATG
28031629 TAG
62 TAG
* ** * * * * * *
28031632 ACAAGAGAGCTACGGGATATATGTAGCTAGGTTGCATGCGTGGTTCCAGGTGAAGGACACCA-GT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACTA--T-ATGTACACCATGT
28031696 AG
63 AG
* * * * *
28031698 ACAAGAGAGCTACGAGATA-AAGTGGCTAGGTCACATGGGTGATACTCTGTGTGCACCATGT-G
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATGTAG
28031760 TACAAGAGAGC
1 -ACAAGAGAGC
28031771 CAAAATTATG
Statistics
Matches: 111, Mismatches: 23, Indels: 15
0.74 0.15 0.10
Matches are distributed among these distances:
62 7 0.06
63 13 0.12
64 22 0.20
65 22 0.20
66 24 0.22
67 8 0.07
68 15 0.14
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCACATGGGTGATACTATATGTACACCATGTAG
Found at i:28046066 original size:29 final size:29
Alignment explanation
Indices: 28046038--28046138 Score: 139
Period size: 29 Copynumber: 3.5 Consensus size: 29
28046028 CCTCCGAGCT
** * * *
28046038 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
28046067 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
28046096 CGCACACTTAGTGTCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28046125 CGCACACTTAGTGC
1 CGCACACTTAGTGC
28046139 TGATCTCGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:28047155 original size:21 final size:21
Alignment explanation
Indices: 28047129--28047171 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
28047119 TCCCCCCCTT
28047129 TTTCCATAGCCGAATGTTCCA
1 TTTCCATAGCCGAATGTTCCA
28047150 TTTCCATAGCCGAATGTTCCA
1 TTTCCATAGCCGAATGTTCCA
28047171 T
1 T
28047172 AGCAAGAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (21 bp):
TTTCCATAGCCGAATGTTCCA
Found at i:28053498 original size:41 final size:41
Alignment explanation
Indices: 28053437--28053514 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
28053427 TAAAAGCCAC
*
28053437 CGATGGATCCACGATAGTCAAGCAACCATGCGATCCTTAAT
1 CGATGGATCCACGATAGTCAAACAACCATGCGATCCTTAAT
*
28053478 CGATGGATCCACGATCGTCAAACAACCATGCGATCCT
1 CGATGGATCCACGATAGTCAAACAACCATGCGATCCT
28053515 CAATTTCTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (41 bp):
CGATGGATCCACGATAGTCAAACAACCATGCGATCCTTAAT
Found at i:28053808 original size:27 final size:27
Alignment explanation
Indices: 28053757--28054071 Score: 248
Period size: 27 Copynumber: 11.7 Consensus size: 27
28053747 TTCACCCTAT
* * * *
28053757 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
28053784 AAGGGTATTTTGGTAATTTTGCAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*
28053811 AATGGTATTTCT-GTAATTTTTGA-AAATC
1 AAGGGTATTT-TGGTAA-TTTT-ACAAATC
* **
28053839 AAGGGTATTTTTGTAATTTTGTAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
* *
28053866 AAGGGTATTTCT-ATAATTTTCCAAATC
1 AAGGGTATTT-TGGTAATTTTACAAATC
* *
28053893 AAGGGTA-TTTGAATAATTTTACAAGTC
1 AAGGGTATTTTG-GTAATTTTACAAATC
* ** *
28053920 GAA-GGTATTTCGGTAATTTTACAGGTT
1 -AAGGGTATTTTGGTAATTTTACAAATC
* * *
28053947 AAGGTTATTTTTGTAATTTCACAAATC
1 AAGGGTATTTTGGTAATTTTACAAATC
28053974 -AGGGTATTTTGGTAATTTTACAAA-C
1 AAGGGTATTTTGGTAATTTTACAAATC
* * * *
28053999 TAGGGGTATTTTGATAATTTTGCTAATC
1 -AAGGGTATTTTGGTAATTTTACAAATC
* ** *
28054027 GAGGGTATTTTGGTAATTTTGTAAACC
1 AAGGGTATTTTGGTAATTTTACAAATC
*
28054054 AAGGGTATTTTAGTAATT
1 AAGGGTATTTTGGTAATT
28054072 CTACCCTACA
Statistics
Matches: 234, Mismatches: 40, Indels: 28
0.77 0.13 0.09
Matches are distributed among these distances:
25 2 0.01
26 25 0.11
27 178 0.76
28 29 0.12
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTGGTAATTTTACAAATC
Found at i:28054117 original size:27 final size:27
Alignment explanation
Indices: 28054056--28054136 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
28054046 TGTAAACCAA
*
28054056 GGGTATTTTAGTAATTCTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * * *
28054083 TGGCATTTCAGTAATTCTATCCTACTG
1 GGGTATTTCAGTAATTCTACCCTACAG
* * *
28054110 GGGTATTTCAGTGATACTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
28054137 ATATGAGATT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.36
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:28054217 original size:17 final size:18
Alignment explanation
Indices: 28054195--28054229 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
28054185 ATTTATCCAC
28054195 TTGGGCCCACA-GGCCCA
1 TTGGGCCCACATGGCCCA
28054212 TTGGGCCCACATGGCCCA
1 TTGGGCCCACATGGCCCA
28054230 AAGTAACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.17, C:0.40, G:0.29, T:0.14
Consensus pattern (18 bp):
TTGGGCCCACATGGCCCA
Found at i:28070133 original size:13 final size:13
Alignment explanation
Indices: 28070115--28070139 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28070105 GATATAAATT
28070115 CACAGAAAATAAA
1 CACAGAAAATAAA
28070128 CACAGAAAATAA
1 CACAGAAAATAA
28070140 TTTTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.16, G:0.08, T:0.08
Consensus pattern (13 bp):
CACAGAAAATAAA
Found at i:28083873 original size:20 final size:20
Alignment explanation
Indices: 28083848--28083915 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
28083838 ATGAACTTAG
28083848 ACCACAACTTATGAGCTCAA
1 ACCACAACTTATGAGCTCAA
* *
28083868 ATCACATA-TATCATGAGCTCAG
1 ACCACA-ACT-T-ATGAGCTCAA
* *
28083890 ACCACAACTCATGAGTTCAA
1 ACCACAACTTATGAGCTCAA
28083910 ACCACA
1 ACCACA
28083916 TAGTTCCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
20 20 0.53
21 3 0.08
22 15 0.39
ACGTcount: A:0.40, C:0.29, G:0.10, T:0.21
Consensus pattern (20 bp):
ACCACAACTTATGAGCTCAA
Found at i:28083882 original size:42 final size:42
Alignment explanation
Indices: 28083830--28083917 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
28083820 ACACGTGTCC
* * *
28083830 CATAAATCATGAACTTAGACCACAACTTATGAGCTCAAATCA
1 CATAAATCATGAACTCAGACCACAACTCATGAGCTCAAACCA
* * *
28083872 CATATATCATGAGCTCAGACCACAACTCATGAGTTCAAACCA
1 CATAAATCATGAACTCAGACCACAACTCATGAGCTCAAACCA
28083914 CATA
1 CATA
28083918 GTTCCTAGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.41, C:0.26, G:0.10, T:0.23
Consensus pattern (42 bp):
CATAAATCATGAACTCAGACCACAACTCATGAGCTCAAACCA
Found at i:28083895 original size:22 final size:21
Alignment explanation
Indices: 28083858--28083917 Score: 68
Period size: 20 Copynumber: 2.9 Consensus size: 21
28083848 ACCACAACTT
*
28083858 ATGAGCTCAAATCACATATATC
1 ATGAGCTCAAACCACATA-ATC
* *
28083880 ATGAGCTCAGACCACA-ACTC
1 ATGAGCTCAAACCACATAATC
*
28083900 ATGAGTTCAAACCACATA
1 ATGAGCTCAAACCACATA
28083918 GTTCCTAGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 16 0.50
21 2 0.06
22 14 0.44
ACGTcount: A:0.40, C:0.27, G:0.12, T:0.22
Consensus pattern (21 bp):
ATGAGCTCAAACCACATAATC
Found at i:28085937 original size:40 final size:40
Alignment explanation
Indices: 28085811--28086017 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
28085801 CAATTGAATG
* * ** * ** *
28085811 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATC
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * **
28085851 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAG-TGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTTG-TT
*
28085891 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
28085931 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
* * * *
28085971 CTATCTGGGCTAAGACCCGAAGG-ATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
28086010 ATATCCGG
1 ATATCCGG
28086018 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 23 0.17
40 109 0.79
41 6 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
Found at i:28092020 original size:48 final size:48
Alignment explanation
Indices: 28091949--28092225 Score: 394
Period size: 48 Copynumber: 5.8 Consensus size: 48
28091939 CACCATATTA
* * * * * *
28091949 ATGTGTGCCAGTGTAAGACCATGTCTAGGAAATAGCATCGGCGATTAT
1 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
* *
28091997 ATGTGTACCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
1 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
28092045 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
1 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
28092093 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
1 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
* * * *
28092141 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGTATCGGCAATAACT
1 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGA-T
* * * *
28092190 -TGTGTGCTAGTATAAGACCATGTCTAGGACATGGCA
1 ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCA
28092226 ATGGGACTGA
Statistics
Matches: 211, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
48 210 1.00
49 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
ATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGAT
Found at i:28092254 original size:144 final size:142
Alignment explanation
Indices: 28091955--28092273 Score: 338
Period size: 144 Copynumber: 2.2 Consensus size: 142
28091945 ATTAATGTGT
* * * * * *
28091955 GCCAGTGTAAGACCATGTCTAGGAAATAGCATCGGCGATTATATGTGTACCAGTGTAAGACCATG
1 GCCAGTATAAGACCATGTCTGGGAAATGGCATCGACGATGATATGTCTACCAGTGTAAGACCATG
* * * *
28092020 TCTGGGACATGGCATCGACGATGATATGTCTGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
66 TCTGGGACATGGCATCGACAATAATATGTCTGCCAGTATAAGACCATGTCTAGGACATGGCATCG
* *
28092085 ACGATGATATGTCT
131 AC-ATGACATG-CA
* * *
28092099 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTCTGCCAGTGTAAGACCATG
1 GCCAGTATAAGACCATGTCTGGGAAATGGCATCGACGATGATATGTCTACCAGTGTAAGACCATG
* * * *
28092164 TCTGGGACATGGTATCGGCAATAACT-TGTGTGCTAGTATAAGACCATGTCTAGGACATGGCAAT
66 TCTGGGACATGGCATCGACAATAA-TATGTCTGCCAGTATAAGACCATGTCTAGGACATGGC-AT
*
28092228 GGGAC-TGACATG-A
129 -CGACATGACATGCA
* * * *
28092241 GACCTTGTATAAGACCATATCCGGGATATGGCA
1 G-CC-AGTATAAGACCATGTCTGGGAAATGGCA
28092274 ATGATATGTG
Statistics
Matches: 147, Mismatches: 23, Indels: 10
0.82 0.13 0.06
Matches are distributed among these distances:
142 1 0.01
143 2 0.01
144 138 0.94
145 3 0.02
146 3 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (142 bp):
GCCAGTATAAGACCATGTCTGGGAAATGGCATCGACGATGATATGTCTACCAGTGTAAGACCATG
TCTGGGACATGGCATCGACAATAATATGTCTGCCAGTATAAGACCATGTCTAGGACATGGCATCG
ACATGACATGCA
Found at i:28093731 original size:40 final size:40
Alignment explanation
Indices: 28093686--28093815 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
28093676 CGGAATATAA
28093686 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
28093726 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
28093766 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
28093806 CCGGATATAA
1 CCGGATATAA
28093816 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:28093830 original size:40 final size:39
Alignment explanation
Indices: 28093702--28093852 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
28093692 ATAACCATGT
* * *
28093702 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
28093742 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
28093782 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
28093821 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
28093853 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:28093836 original size:80 final size:79
Alignment explanation
Indices: 28093686--28093852 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
28093676 CGGAATATAA
*
28093686 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
28093751 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
28093766 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
28093828 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
28093845 CCGGATAT
1 CCGGATAT
28093853 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:28101766 original size:40 final size:40
Alignment explanation
Indices: 28101721--28101850 Score: 172
Period size: 40 Copynumber: 3.2 Consensus size: 40
28101711 CGGAATATAA
28101721 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACT-TGCACAAATGCCTTCGGGTCTTAGC
* ** * *
28101761 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
* * *
28101801 CCGGATATAGCCACTTGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
28101841 CCGGATATAA
1 CCGGATATAA
28101851 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
40 74 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:28101865 original size:40 final size:39
Alignment explanation
Indices: 28101737--28101887 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
28101727 ATAACCATGT
* * *
28101737 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
** *
28101777 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATATAGCCACTT
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCAC-C
* **
28101817 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
* *
28101856 AGCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 -GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
28101888 CATTCAATTT
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.16
40 77 0.82
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (39 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCACC
Found at i:28101871 original size:80 final size:79
Alignment explanation
Indices: 28101721--28101887 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
28101711 CGGAATATAA
*
28101721 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATG
1 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
28101786 CCTTCGGGTCTTAGC
66 CCTTCGGG-CTTAGC
* * * ** *
28101801 CCGGATATAGCCACT-TGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCA-TGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA
*
28101863 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
28101880 CCGGATAT
1 CCGGATAT
28101888 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 17 0.22
80 58 0.76
81 1 0.01
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (79 bp):
CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:28105254 original size:19 final size:19
Alignment explanation
Indices: 28105220--28105258 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
28105210 GATTTCATAC
*
28105220 TTTGGCCCATTTTCTCCGTT
1 TTTGGCCCAGTTTCT-CGTT
28105240 TTTGGCCC-GTTTCTCGTT
1 TTTGGCCCAGTTTCTCGTT
28105258 T
1 T
28105259 CTTTCACTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51
Consensus pattern (19 bp):
TTTGGCCCAGTTTCTCGTT
Found at i:28108278 original size:15 final size:15
Alignment explanation
Indices: 28108258--28108298 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
28108248 ATGACAATGT
28108258 ATCTTGGATTTCTTA
1 ATCTTGGATTTCTTA
*
28108273 ATCTTGGAAATTTCTTT
1 ATCTTGG--ATTTCTTA
28108290 ATCTTGGAT
1 ATCTTGGAT
28108299 ATCTCTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 9 0.39
17 14 0.61
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (15 bp):
ATCTTGGATTTCTTA
Found at i:28108287 original size:17 final size:17
Alignment explanation
Indices: 28108265--28108297 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
28108255 TGTATCTTGG
28108265 ATTTCTTAATCTTGGAA
1 ATTTCTTAATCTTGGAA
*
28108282 ATTTCTTTATCTTGGA
1 ATTTCTTAATCTTGGA
28108298 TATCTCTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (17 bp):
ATTTCTTAATCTTGGAA
Found at i:28108559 original size:123 final size:123
Alignment explanation
Indices: 28108327--28108567 Score: 412
Period size: 123 Copynumber: 2.0 Consensus size: 123
28108317 TTTATATGGG
* * * *
28108327 TTTTTTTGCCATATTTATTCCGTAAGTTATTAATCATGGTTTGTACCTAAAGTTTGTTCTTTGGT
1 TTTTTTTGCCATATTTATTCCATAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGT
*
28108392 TTATGATGACTATGTCAATTATGACTATGTTTTCGATTTTATTTTAGCAACATGATGA
66 TTATGATGACTATGTCAATTATGACTATGTTTTCGATTTGATTTTAGCAACATGATGA
28108450 TTTTATTT-CCATATTTATTCCATAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGG
1 TTTT-TTTGCCATATTTATTCCATAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGG
*
28108514 TTTATGATGACTATGTCAATTATGACTATGTTTTCGGTTTGATTTTAGCAACAT
65 TTTATGATGACTATGTCAATTATGACTATGTTTTCGATTTGATTTTAGCAACAT
28108568 TATCGAGATC
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
123 108 0.97
124 3 0.03
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (123 bp):
TTTTTTTGCCATATTTATTCCATAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGT
TTATGATGACTATGTCAATTATGACTATGTTTTCGATTTGATTTTAGCAACATGATGA
Found at i:28108894 original size:247 final size:247
Alignment explanation
Indices: 28108458--28109061 Score: 1012
Period size: 247 Copynumber: 2.4 Consensus size: 247
28108448 GATTTTATTT
* *
28108458 CCATATTTATTCCATAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGTTTATGATG
1 CCATATTTATTACGTAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGTTTATGATG
*
28108523 ACTATGTCAATTATGACTATGTTT-TCGGTTTGATTTTAGCAACATTATCGAGATCCTTCATATT
66 ACTATGTCAATTATGACTATGTTTCT-AGTTTGATTTTAGCAACATTATCGAGATCCTTCATATT
* *
28108587 TTCTTATGAGCTTTGTTCTGGATCTTTCGTTATGACAATGTATCTTGGATTTCTGAATCTTGGAA
130 TTCTTATGAGCTTTGTTCTGGATCTTTCGTTATGACAATGCATCTTAGATTTCTGAATCTTGGAA
28108652 ATTTCTTTATCTTGGATATCTCTGTTTTGAACTTCTTTATATAGGTTTTCTTG
195 ATTTCTTTATCTTGGATATCTCTGTTTTGAACTTCTTTATATAGGTTTTCTTG
* * * *
28108705 CCATATTTATTTCGTAAGTTATTAATCATGGTTCATACCTACAGTGTGTTCTTTGGTTTATGATG
1 CCATATTTATTACGTAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGTTTATGATG
28108770 ACTATGTCAATTATGACTATGTTTCTAGTTTGATTTTAGCAACATTATCGAGATCCTTCATATTT
66 ACTATGTCAATTATGACTATGTTTCTAGTTTGATTTTAGCAACATTATCGAGATCCTTCATATTT
* *
28108835 TCTTATGAGCTTTGTTCTGGATCTTTTGTTATGACAATGCATCTTAGATTTCTGAATCTTGGAAG
131 TCTTATGAGCTTTGTTCTGGATCTTTCGTTATGACAATGCATCTTAGATTTCTGAATCTTGGAAA
* *
28108900 TTTCTTTATCTTGGATATCTTTGTTTTGAACTTCTTTATATGGGTTTTCTTG
196 TTTCTTTATCTTGGATATCTCTGTTTTGAACTTCTTTATATAGGTTTTCTTG
* *
28108952 CCATATTTATTACGTAAATTATTAATCATGGTTCGTACCTAAAGTCTATTCTTTGGTTTATGATG
1 CCATATTTATTACGTAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGTTTATGATG
* * * * *
28109017 ACTATGTTAATTATGACTATGTTTCCAATTTTATTTTAGTAACAT
66 ACTATGTCAATTATGACTATGTTTCTAGTTTGATTTTAGCAACAT
28109062 GATGATTCCA
Statistics
Matches: 333, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
247 332 1.00
248 1 0.00
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.48
Consensus pattern (247 bp):
CCATATTTATTACGTAAATTATTAATCATGGTTCGTACCTAAAGTGTGTTCTTTGGTTTATGATG
ACTATGTCAATTATGACTATGTTTCTAGTTTGATTTTAGCAACATTATCGAGATCCTTCATATTT
TCTTATGAGCTTTGTTCTGGATCTTTCGTTATGACAATGCATCTTAGATTTCTGAATCTTGGAAA
TTTCTTTATCTTGGATATCTCTGTTTTGAACTTCTTTATATAGGTTTTCTTG
Found at i:28114642 original size:48 final size:48
Alignment explanation
Indices: 28114566--28114695 Score: 174
Period size: 48 Copynumber: 2.7 Consensus size: 48
28114556 TATCACAGTT
* * *
28114566 ATACGTGTAACATGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACTTGGTGCTAAGTGGATATACCACGATTACACATATTA
* * *
28114614 ATACATGTAACTTGGTGCTAAGTGGATATGCCACGGTTACATATATTA
1 ATACATGTAACTTGGTGCTAAGTGGATATACCACGATTACACATATTA
*
28114662 ATTCAT-TAA-TGTGGTGCTAAGTGGATATACCACG
1 ATACATGTAACT-TGGTGCTAAGTGGATATACCACG
28114696 GTTAATGTAA
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
46 1 0.01
47 25 0.34
48 47 0.64
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (48 bp):
ATACATGTAACTTGGTGCTAAGTGGATATACCACGATTACACATATTA
Found at i:28114695 original size:47 final size:47
Alignment explanation
Indices: 28114578--28114781 Score: 200
Period size: 47 Copynumber: 4.6 Consensus size: 47
28114568 ACGTGTAACA
* * * *
28114578 TGGTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACT-
1 TGGTGCTAAGTGGATATACCACGGTTACATATATTAATTCAT-TAA-TG
*
28114626 TGGTGCTAAGTGGATATGCCACGGTTACATATATTAATTCATTAATG
1 TGGTGCTAAGTGGATATACCACGGTTACATATATTAATTCATTAATG
*
28114673 TGGTGCTAAGTGGATATACCACGGTT--A-AT-GTAA--C------G
1 TGGTGCTAAGTGGATATACCACGGTTACATATATTAATTCATTAATG
* * * **
28114708 TGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAACA
1 TGGTGCTAAGTGGATATACCACGGTTACATATATTAATTCATTAATG
28114755 TGGTGCTAAGTGGATATACCACGGTTA
1 TGGTGCTAAGTGGATATACCACGGTTA
28114782 AACATGTAAC
Statistics
Matches: 129, Mismatches: 14, Indels: 27
0.76 0.08 0.16
Matches are distributed among these distances:
35 25 0.19
37 1 0.01
38 2 0.02
39 2 0.02
41 2 0.02
43 3 0.02
44 2 0.02
45 1 0.01
46 1 0.01
47 53 0.41
48 37 0.29
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (47 bp):
TGGTGCTAAGTGGATATACCACGGTTACATATATTAATTCATTAATG
Found at i:28114720 original size:82 final size:84
Alignment explanation
Indices: 28114616--28114811 Score: 324
Period size: 82 Copynumber: 2.3 Consensus size: 84
28114606 ACATATTGAT
* * **
28114616 ACATGTAACTTGGTGCTAAGTGGATATGCCACGGTTACATATATTAATTCATTAATGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTAATTCATTAACATGGTGCTA
28114681 AGTGGATATACCACGGTT-
66 AGTGGATATACCACGGTTA
*
28114699 A-ATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTAATTCATTAACATGGTGCTA
28114763 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTT-A
28114783 ACATGTAACGTGGTGCTAAGTGGATATGC
1 ACATGTAACGTGGTGCTAAGTGGATATGC
28114812 GATGGTTATA
Statistics
Matches: 105, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
82 76 0.72
83 1 0.01
84 1 0.01
85 27 0.26
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (84 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTACATATATTAATTCATTAACATGGTGCTA
AGTGGATATACCACGGTTA
Found at i:28124652 original size:39 final size:39
Alignment explanation
Indices: 28124574--28124723 Score: 273
Period size: 39 Copynumber: 3.8 Consensus size: 39
28124564 TATGGTAGCC
* *
28124574 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
28124614 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
28124653 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
28124692 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
28124724 TACCCGAACA
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 91 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:28132663 original size:39 final size:39
Alignment explanation
Indices: 28132585--28132695 Score: 195
Period size: 39 Copynumber: 2.8 Consensus size: 39
28132575 TATGGTAGCC
* *
28132585 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
28132625 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
28132664 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT
28132696 TACCCGAACA
Statistics
Matches: 69, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 52 0.75
40 17 0.25
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:28141055 original size:23 final size:23
Alignment explanation
Indices: 28141025--28141068 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
28141015 AGAGAAAGAA
28141025 AGAAGAAAAGAGTTTAGGGAGAG
1 AGAAGAAAAGAGTTTAGGGAGAG
28141048 AGAAGAAAAGAGTTTAGGGAG
1 AGAAGAAAAGAGTTTAGGGAG
28141069 TTCGATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.39, T:0.14
Consensus pattern (23 bp):
AGAAGAAAAGAGTTTAGGGAGAG
Found at i:28144002 original size:48 final size:48
Alignment explanation
Indices: 28143712--28143989 Score: 396
Period size: 48 Copynumber: 5.8 Consensus size: 48
28143702 CACCATATTA
* *
28143712 ATGTGTGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGCGATGAT
1 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * * * *
28143760 ATGTGTGCCAGTGTAAGAACATGTCTAGGACATGGCATCGACAATGAT
1 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
28143808 ATGTATGCCAGTGTAGGACCATGTCTGGGA-ATTGGCTTCGACGATGAT
1 ATGTATGCCAGTGTAAGACCATGTCTGGGACA-TGGCATCGGCGATGAT
* *
28143856 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGACATCAGCGATGAT
1 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
*
28143904 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAC
1 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
* * *
28143952 ATGTGTGCTAGTATAAGACCATGTCTGGGACATGGCAT
1 ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCAT
28143990 TGGCACTGAC
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
47 1 0.00
48 204 0.99
49 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
ATGTATGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGAT
Found at i:28145803 original size:29 final size:28
Alignment explanation
Indices: 28145701--28145803 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
28145691 GTGACAAGAT
*
28145701 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
**
28145730 TGGCACTAAGTGTGCGAATTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
28145759 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
28145788 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
28145804 TGATCGATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.06
29 58 0.92
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:28151023 original size:40 final size:40
Alignment explanation
Indices: 28150824--28151029 Score: 200
Period size: 40 Copynumber: 5.2 Consensus size: 40
28150814 ATTGAATGAC
* * ** **
28150824 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAA-TAATTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGC-AAGTGGTTAT
* * ** *
28150864 ATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGGTTAT
* * *
28150904 ATCCGAGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
* * * *
28150944 ATCCGGGCTAACACCCGAAGGCATTTGTGCAACTCGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
* *
28150984 ATCCGGGCTAAGATCCGAAGGCATTCGTGCATGTGGTTAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
28151024 ATCCGG
1 ATCCGG
28151030 TTGTATTTCG
Statistics
Matches: 136, Mismatches: 27, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 4 0.03
40 129 0.95
41 3 0.02
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGGTTAT
Found at i:28155100 original size:41 final size:41
Alignment explanation
Indices: 28155055--28155172 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
28155045 TGAAAGATAA
28155055 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
28155096 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28155126 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28155167 ATGTAG
1 ATGTAG
28155173 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:28155111 original size:71 final size:71
Alignment explanation
Indices: 28155023--28155186 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
28155013 GAGATGTATC
28155023 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28155088 AGGACA
66 AGGACA
28155094 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28155159 AGGACA
66 AGGACA
28155165 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
28155187 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:28169255 original size:39 final size:40
Alignment explanation
Indices: 28169110--28169316 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
28169100 CAATTGAATG
* * ** * **
28169110 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * **
28169150 ATATCCGGGTTAAGACCCGAAGGCCATT-GTGCTAGT-GACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAAGTCG-TT
* *
28169190 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
28169230 AAATCCGGGCTAATA-CCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
28169269 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
28169309 ATATCCGG
1 ATATCCGG
28169317 TTGTATTCCG
Statistics
Matches: 139, Mismatches: 23, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
39 38 0.27
40 96 0.69
41 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:28175385 original size:29 final size:28
Alignment explanation
Indices: 28175283--28175385 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 28
28175273 GTGACAAGAT
*
28175283 TGGCACTAAGTGTGCAAGCTTGAAA-AGTA
1 TGGCACTAAGTGTGCGAGCTT-AAATA-TA
**
28175312 TGGCACTAAGTGTGCGAATTTAAATTATA
1 TGGCACTAAGTGTGCGAGCTTAAA-TATA
* *
28175341 TGGCACTATGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAAT-ATA
28175370 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
28175386 TGATCGATTA
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
28 4 0.06
29 58 0.92
30 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTAAATATA
Found at i:28192293 original size:40 final size:40
Alignment explanation
Indices: 28192248--28192427 Score: 274
Period size: 40 Copynumber: 4.5 Consensus size: 40
28192238 TTCGAATGAT
28192248 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
28192288 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* *
28192328 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
28192368 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATA
1 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
*
28192409 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGTTAAT-TCCCGAAG
28192428 ACAATCGAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:28192452 original size:80 final size:80
Alignment explanation
Indices: 28192248--28192467 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 80
28192238 TTCGAATGAT
* * * * * * *
28192248 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGCTAATTCCCGAAGACAATCGAGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
* *
28192313 TGTGCGAGTTACTAA
66 TGCGCGAATTACTAA
* * * * *
28192328 ATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAATTCCCGAAGACAATCGAGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
28192393 TGCGCGAATTACTATA
66 TGCGCGAATTACTA-A
* * *
28192409 A-CCGGGCT-ATGTCCCGAAGACAATCGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGGCTAAT-TCCCGAAGACAATCGAGCGAGTTA-CCAAATCCGGGTTAAATCCCGAAGG
28192468 TACGTGATTC
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
79 18 0.15
80 104 0.84
81 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAATTCCCGAAGACAATCGAGCGAGTTACCAAATCCGGGTTAAATCCCGAAGGCATT
TGCGCGAATTACTAA
Found at i:28192461 original size:120 final size:119
Alignment explanation
Indices: 28192248--28192467 Score: 286
Period size: 120 Copynumber: 1.8 Consensus size: 119
28192238 TTCGAATGAT
* * * * * *
28192248 ATCCGGGTTAATTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAAT
* *
28192313 TGTGCGAGTTACTAAATCCGGGTTAATTCCCGAAGGCAATTGTGCGAGTTACCAA
66 CGAGCGAGTTACTAAATCCGGGTTAATT-CCGAAGGCAATTGTGCGAGTTACCAA
28192368 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTATAA-CCGGGCT-ATGTCCCGAAGACA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTA-AATCCGGGCTAAT-TCCCGAAGACA
*
28192431 ATCGAGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
64 ATCGAGCGAGTTA-CTAAATCCGGGTT-AATTCCGAAGG
28192468 TACGTGATTC
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
119 15 0.17
120 70 0.80
121 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (119 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGCGCGAATTACTAAATCCGGGCTAATTCCCGAAGACAAT
CGAGCGAGTTACTAAATCCGGGTTAATTCCGAAGGCAATTGTGCGAGTTACCAA
Found at i:28207725 original size:37 final size:36
Alignment explanation
Indices: 28207680--28207752 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 36
28207670 ATGTAATCAC
* * *
28207680 ATATCGATGTCACTATCCCAGACATGGTGTTACACG
1 ATATCGATGCCAATATCCCAGACATGGTCTTACACG
*
28207716 ATATACGATGCCAATGTCCCAGACATGGTCTTACACG
1 ATAT-CGATGCCAATATCCCAGACATGGTCTTACACG
28207753 TAAATCACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 4 0.12
37 28 0.88
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (36 bp):
ATATCGATGCCAATATCCCAGACATGGTCTTACACG
Found at i:28207772 original size:44 final size:43
Alignment explanation
Indices: 28207722--28207804 Score: 130
Period size: 44 Copynumber: 1.9 Consensus size: 43
28207712 CACGATATAC
*
28207722 GATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATT
1 GATGCCAACGTCCCAGACATGGTCTTACACG-AAATCACAAATT
* *
28207766 GATGCCACCGTCCCAGACATGGTCTTACATGAAATCACA
1 GATGCCAACGTCCCAGACATGGTCTTACACGAAATCACA
28207805 TATCAGAATC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 8 0.22
44 28 0.78
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
GATGCCAACGTCCCAGACATGGTCTTACACGAAATCACAAATT
Found at i:28208882 original size:13 final size:13
Alignment explanation
Indices: 28208864--28208888 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28208854 ACAAACGATA
28208864 AAATTTTCACACG
1 AAATTTTCACACG
28208877 AAATTTTCACAC
1 AAATTTTCACAC
28208889 ATATTAATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:28213044 original size:11 final size:11
Alignment explanation
Indices: 28213030--28213077 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
28213020 ATATCCAACT
28213030 AATAATAGCAA
1 AATAATAGCAA
28213041 AATAATAG-AA
1 AATAATAGCAA
*
28213051 TTATAATAGCAA
1 -AATAATAGCAA
**
28213063 AATGGTAGCAA
1 AATAATAGCAA
28213074 AATA
1 AATA
28213078 GCAGCAAAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
10 2 0.07
11 26 0.87
12 2 0.07
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.23
Consensus pattern (11 bp):
AATAATAGCAA
Found at i:28214742 original size:48 final size:47
Alignment explanation
Indices: 28214671--28214826 Score: 197
Period size: 48 Copynumber: 3.3 Consensus size: 47
28214661 GTGCGAATTA
* *
28214671 TACCTTGATTTGCCT-TCGAGCCATGGTATAGGTATTTCAAAGATAAGT
1 TACCTTGATTTGGCTAT-GAGCCATGGTATAGGTA-TTCAAGGATAAGT
* * *
28214719 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGGGGATAAGT
1 TACCTTGATTTGGCTATGAGCCATGGTATAGGTATTCA-AGGATAAGT
* * *
28214767 TACCTTGATTTGGATACGAGCCATGGTATAGGTACTCCAAGGATAAGT
1 TACCTTGATTTGGCTATGAGCCATGGTATAGGTA-TTCAAGGATAAGT
28214815 TACCTTGATTTG
1 TACCTTGATTTG
28214827 ACTTCAGGGA
Statistics
Matches: 94, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 3 0.03
48 88 0.94
49 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGAGCCATGGTATAGGTATTCAAGGATAAGT
Found at i:28216949 original size:29 final size:28
Alignment explanation
Indices: 28216883--28216978 Score: 97
Period size: 29 Copynumber: 3.4 Consensus size: 28
28216873 TACATACATG
28216883 CATATGGCCCACTGGACCCAATCTC-T-TT
1 CATATGGCCCACTGG-CCCAAT-TCATATT
*
28216911 CATATAGCCCATCTGGCCCAATTCATATT
1 CATATGGCCCA-CTGGCCCAATTCATATT
* * * *
28216940 CTTATGGCCCACTAAGCCCAACTCACATT
1 CATATGGCCCACT-GGCCCAATTCATATT
28216969 CATATGGCCC
1 CATATGGCCC
28216979 CTTTAGGCCC
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.04
28 19 0.33
29 36 0.63
ACGTcount: A:0.25, C:0.35, G:0.12, T:0.27
Consensus pattern (28 bp):
CATATGGCCCACTGGCCCAATTCATATT
Found at i:28216996 original size:30 final size:29
Alignment explanation
Indices: 28216925--28217027 Score: 91
Period size: 29 Copynumber: 3.5 Consensus size: 29
28216915 TAGCCCATCT
* * *
28216925 GGCCCAATTCATATTCTTATGGCCCAC-TA
1 GGCCCAAATCACATTCATATGGCCC-CTTA
* *
28216954 AGCCCAACTCACATTCATATGGCCCCTTTA
1 GGCCCAAATCACATTCATATGGCCCC-TTA
* * *
28216984 GGCCCAAATCACATTTATGTGGCCCATTA
1 GGCCCAAATCACATTCATATGGCCCCTTA
* *
28217013 GGCCTAAACCACATT
1 GGCCCAAATCACATT
28217028 ATGCTCATGC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 1 0.02
29 37 0.61
30 23 0.38
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (29 bp):
GGCCCAAATCACATTCATATGGCCCCTTA
Found at i:28221544 original size:29 final size:28
Alignment explanation
Indices: 28221458--28221592 Score: 94
Period size: 29 Copynumber: 4.8 Consensus size: 28
28221448 TACATACAAG
* *
28221458 CATATGGCCCACTCGGCCCAATCTCATT
1 CATATGGCCCACTAGGCCCAATCACATT
* ** *
28221486 CATATGGACCATCT-GGCCCGGTTCATATT
1 CATATGGCCCA-CTAGGCCC-AATCACATT
*
28221515 CTTATGGCCCACTAGGCCCAACTCACATT
1 CATATGGCCCACTAGGCCCAA-TCACATT
* ** *
28221544 CATATGCCCCTTTAGGCCCAAATTACATT
1 CATATGGCCCACTAGGCCC-AATCACATT
* * *
28221573 TATGTGGCCCA-TAGGTCCAA
1 CATATGGCCCACTAGGCCCAA
28221593 ATTGCATTAT
Statistics
Matches: 82, Mismatches: 20, Indels: 11
0.73 0.18 0.10
Matches are distributed among these distances:
27 2 0.02
28 23 0.28
29 55 0.67
30 2 0.02
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATCACATT
Found at i:28221706 original size:19 final size:18
Alignment explanation
Indices: 28221673--28221709 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
28221663 TGGGCTCAAC
28221673 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
28221691 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
28221710 GACGAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:28221856 original size:33 final size:34
Alignment explanation
Indices: 28221814--28221886 Score: 121
Period size: 33 Copynumber: 2.2 Consensus size: 34
28221804 CCACATAGTT
*
28221814 CATATACATTTCACGTATTCCCAATTCATTTGC-
1 CATATACATTTCACATATTCCCAATTCATTTGCA
*
28221847 CATATACATTTCATATATTCCCAATTCATTTGCA
1 CATATACATTTCACATATTCCCAATTCATTTGCA
28221881 CATATA
1 CATATA
28221887 GCATATTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
33 31 0.84
34 6 0.16
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40
Consensus pattern (34 bp):
CATATACATTTCACATATTCCCAATTCATTTGCA
Found at i:28228438 original size:58 final size:58
Alignment explanation
Indices: 28228286--28228445 Score: 167
Period size: 58 Copynumber: 2.8 Consensus size: 58
28228276 AATTTAAGCC
* *** * * ** * *
28228286 CGCACACACAGTGCCATACCCTTCGAGCTCGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
* * * * * *
28228344 TGCACACATAGTGTCGTATTTTTCCAGCATGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
*
28228402 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
1 CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCC
28228446 AATCTCGTCA
Statistics
Matches: 81, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
58 81 1.00
ACGTcount: A:0.23, C:0.33, G:0.16, T:0.28
Consensus pattern (58 bp):
CGCACACATAGTGCCATATATTTCCAGCACGCACACTTAGTGCCGTATATTTCCAGCA
Found at i:28228446 original size:29 final size:29
Alignment explanation
Indices: 28228315--28228446 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
28228305 CCTTCGAGCT
** * * *
28228315 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * * *
28228344 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
28228373 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28228402 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28228431 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28228447 ATCTCGTCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:28229280 original size:143 final size:141
Alignment explanation
Indices: 28229090--28229384 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
28229080 AAATTCTATA
28229090 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
28229155 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
28229220 GAAGACAACAT
131 GAAAACAACAT
28229231 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
28229296 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
28229361 AGGAAAACAACAT
129 AGGAAAACAACAT
28229374 GCATGGCCGAA
1 GCATGGCCGAA
28229385 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:28236398 original size:29 final size:29
Alignment explanation
Indices: 28236268--28236398 Score: 156
Period size: 29 Copynumber: 4.6 Consensus size: 29
28236258 CCTTCGAGCT
** * * *
28236268 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * *
28236297 TGCACACATAGTGTC-TATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
28236325 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28236354 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28236383 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28236399 ATCTCGTCAC
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 25 0.27
29 66 0.73
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:28237232 original size:143 final size:141
Alignment explanation
Indices: 28237042--28237336 Score: 563
Period size: 143 Copynumber: 2.1 Consensus size: 141
28237032 AAATTCTATA
28237042 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
28237107 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
28237172 GAAGACAACAT
131 GAAAACAACAT
28237183 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
28237248 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
28237313 AGGAAAACAACAT
129 AGGAAAACAACAT
28237326 GCATGGCCGAA
1 GCATGGCCGAA
28237337 ATTTAACTCA
Statistics
Matches: 151, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 132 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:28246086 original size:29 final size:29
Alignment explanation
Indices: 28245897--28246086 Score: 157
Period size: 29 Copynumber: 6.6 Consensus size: 29
28245887 CACTCGATTT
* * * *
28245897 CGCACACTTAGTGCCACACAATTT-AAGCC
1 CGCACACTTAGTGCCATA-TATTTCCAGCA
** *** * *
28245926 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
** * * *
28245955 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * * *
28245984 TGCACACATAGTGTCGTATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
28246013 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28246042 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28246071 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28246087 ATCTCGTCAC
Statistics
Matches: 135, Mismatches: 25, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
28 2 0.01
29 133 0.99
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:28246917 original size:143 final size:141
Alignment explanation
Indices: 28246727--28247021 Score: 554
Period size: 143 Copynumber: 2.1 Consensus size: 141
28246717 AAATTCTATA
28246727 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
1 GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
28246792 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
66 TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
*
28246857 GAAGACAACAT
131 GAAAACAACAT
28246868 GCATGGCCGAATACTCATGCACACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
1 GCATGGCCGAATACTCATG--CACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTT
*
28246933 TTTGTTAAACATTCGACCTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
64 TTTGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCA
28246998 AGGAAAACAACAT
129 AGGAAAACAACAT
28247011 GCATGGCCGAA
1 GCATGGCCGAA
28247022 ATTTAACTCA
Statistics
Matches: 150, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
141 19 0.13
143 131 0.87
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (141 bp):
GCATGGCCGAATACTCATGCACACACACATAACAACAAGAACTCAATGGCACAAAATTTCCTTTT
TGTTAAACATTCGAACTCACTCATCTCCATGCTTTCATCACAACAACATCAAAACACTCACCAAG
GAAAACAACAT
Found at i:28254864 original size:40 final size:41
Alignment explanation
Indices: 28254819--28254985 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
28254809 CGGAATATAA
*
28254819 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
28254859 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
28254899 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
28254939 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
28254978 CCGGATAT
1 CCGGATAT
28254986 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:28255817 original size:17 final size:19
Alignment explanation
Indices: 28255794--28255839 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
28255784 AAGAAGCATG
28255794 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
28255812 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
28255830 AATCATGCTC
1 AATCATGCTC
28255840 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:28264211 original size:15 final size:15
Alignment explanation
Indices: 28264192--28264236 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
28264182 AACGAGGAAT
*
28264192 AAGAAGTCCAAGATA
1 AAGAAATCCAAGATA
*
28264207 GAGAAATCCAAGATA
1 AAGAAATCCAAGATA
28264222 AAGAAATCCAAGATA
1 AAGAAATCCAAGATA
28264237 CAATATCATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.56, C:0.13, G:0.18, T:0.13
Consensus pattern (15 bp):
AAGAAATCCAAGATA
Found at i:28268357 original size:43 final size:42
Alignment explanation
Indices: 28268246--28268359 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 42
28268236 CATCGATAAT
* * *
28268246 GAACTCGGACCTCTCAATGAGCTCGGATGCCACATAGATCAC
1 GAACTCGGACCACTCAACGAGCTCGGATTCCACATAGATCAC
* * ** *
28268288 GAACGT-GGACCACTTAACAATTTCGGATTCTCACATATATCAC
1 GAAC-TCGGACCACTCAACGAGCTCGGATTC-CACATAGATCAC
* *
28268331 GAACTCAGACCGCTCAACGAGCTCGGATT
1 GAACTCGGACCACTCAACGAGCTCGGATT
28268360 TCTTAATTCC
Statistics
Matches: 55, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
42 22 0.40
43 33 0.60
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (42 bp):
GAACTCGGACCACTCAACGAGCTCGGATTCCACATAGATCAC
Found at i:28273489 original size:27 final size:27
Alignment explanation
Indices: 28273472--28273640 Score: 164
Period size: 27 Copynumber: 6.2 Consensus size: 27
28273462 GGCATTTCAT
28273472 TCATTTTACCACATAAGGGCAAAACAG
1 TCATTTTACCACATAAGGGCAAAACAG
* *
28273499 TCATTTTACCATATAAGGGTAAAACAG
1 TCATTTTACCACATAAGGGCAAAACAG
* * *
28273526 CCATTTTACCATATAAGGGTAAAACAG
1 TCATTTTACCACATAAGGGCAAAACAG
** *
28273553 TCATTTTACTGC-CAATTGGGGGTAAAACAG
1 TCATTTTAC--CAC-A-TAAGGGCAAAACAG
*
28273583 TCATTTGACCACATAA-GGCAAAACAG
1 TCATTTTACCACATAAGGGCAAAACAG
* * * *
28273609 TTATTTTATCA-ATTAGGGCAAAACAA
1 TCATTTTACCACATAAGGGCAAAACAG
28273635 TCATTT
1 TCATTT
28273641 CATCAAATTG
Statistics
Matches: 119, Mismatches: 17, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.03
26 31 0.26
27 60 0.50
28 2 0.02
29 3 0.03
30 20 0.17
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (27 bp):
TCATTTTACCACATAAGGGCAAAACAG
Found at i:28273517 original size:54 final size:54
Alignment explanation
Indices: 28273428--28273633 Score: 150
Period size: 54 Copynumber: 3.8 Consensus size: 54
28273418 AAACATATAT
* * * * *** **
28273428 CACAT-AGGGCAAAATAGTTAATTTACCATGGAAGGGCATTTCATTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTACCATAGAAGGGCAAAACAGCCATTTTAC
* *
28273481 CACATAAGGGCAAAACAGTCATTTTACCATATAAGGGTAAAACAGCCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTACCATAGAAGGGCAAAACAGCCATTTTAC
* * * * * * *
28273535 CATATAAGGGTAAAACAGTCATTTTACTGCCAATTG-GGGGTAAAACAGTCATTTGAC
1 CACATAAGGGCAAAACAGTCATTTTA---CC-ATAGAAGGGCAAAACAGCCATTTTAC
* * **
28273592 CACATAA-GGCAAAACAGTTATTTTATCA-ATTAGGGCAAAACA
1 CACATAAGGGCAAAACAGTCATTTTACCATAGAAGGGCAAAACA
28273634 ATCATTTCAT
Statistics
Matches: 121, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
52 10 0.08
53 6 0.05
54 61 0.50
56 16 0.13
57 26 0.21
58 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (54 bp):
CACATAAGGGCAAAACAGTCATTTTACCATAGAAGGGCAAAACAGCCATTTTAC
Found at i:28275366 original size:44 final size:44
Alignment explanation
Indices: 28275267--28275366 Score: 164
Period size: 44 Copynumber: 2.3 Consensus size: 44
28275257 AATTGAGATG
*
28275267 GCACTAAGTGTCTGAAATTATTATAGCTTCGGCTAATCTTTAAA
1 GCACTAAGTGTGTGAAATTATTATAGCTTCGGCTAATCTTTAAA
* * *
28275311 ACACTAAGTGTGTGGAATTATTATAGCTTTGGCTAATCTTTAAA
1 GCACTAAGTGTGTGAAATTATTATAGCTTCGGCTAATCTTTAAA
28275355 GCACTAAGTGTG
1 GCACTAAGTGTG
28275367 CAGATGTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (44 bp):
GCACTAAGTGTGTGAAATTATTATAGCTTCGGCTAATCTTTAAA
Found at i:28285865 original size:40 final size:40
Alignment explanation
Indices: 28285795--28285970 Score: 241
Period size: 40 Copynumber: 4.4 Consensus size: 40
28285785 AAACCAAGTA
* *
28285795 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
28285834 CCTTTGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
28285874 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
28285914 CCTTCGGGGCTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
28285954 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
28285971 AGTTATCATC
Statistics
Matches: 122, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 14 0.11
40 108 0.89
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:28291203 original size:49 final size:50
Alignment explanation
Indices: 28291136--28291382 Score: 248
Period size: 49 Copynumber: 5.0 Consensus size: 50
28291126 AGCTATTGTG
* * *
28291136 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * * *
28291186 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-AGTT
* * * * *
28291236 CGATCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * * * * * *
28291286 AGGTCACGTGTGTAGTACTAAGTGCAAGTTACTACGTATACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
* * * *
28291336 -GGTCGCATGTGTAGTACTTAGCTTC-GGCTACTATGCGTACCAGATAG
1 AGGTCACATGTGTAGTACTAAG-TGCAGGCTACTATGTGTACCAGATAG
28291383 CTTCAGCTAC
Statistics
Matches: 156, Mismatches: 38, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
49 73 0.47
50 44 0.28
51 39 0.25
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTT
Found at i:28301604 original size:60 final size:60
Alignment explanation
Indices: 28301528--28301652 Score: 250
Period size: 60 Copynumber: 2.1 Consensus size: 60
28301518 GGGTAATGAT
28301528 AGGAAGGAAAAAGAAATAGTGCTCAGGAAGGAGACAAGCCAAAAGGGGCAGAAGTGAAAC
1 AGGAAGGAAAAAGAAATAGTGCTCAGGAAGGAGACAAGCCAAAAGGGGCAGAAGTGAAAC
28301588 AGGAAGGAAAAAGAAATAGTGCTCAGGAAGGAGACAAGCCAAAAGGGGCAGAAGTGAAAC
1 AGGAAGGAAAAAGAAATAGTGCTCAGGAAGGAGACAAGCCAAAAGGGGCAGAAGTGAAAC
28301648 AGGAA
1 AGGAA
28301653 CTTACTTACC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 65 1.00
ACGTcount: A:0.49, C:0.11, G:0.34, T:0.06
Consensus pattern (60 bp):
AGGAAGGAAAAAGAAATAGTGCTCAGGAAGGAGACAAGCCAAAAGGGGCAGAAGTGAAAC
Found at i:28302709 original size:29 final size:29
Alignment explanation
Indices: 28302664--28302719 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
28302654 TTCTTGGCCC
28302664 AAAATTCGGGGCGTTACACGGATAATCCT
1 AAAATTCGGGGCGTTACACGGATAATCCT
* *
28302693 AAAATTTGGGGCTTTACACGGATAATC
1 AAAATTCGGGGCGTTACACGGATAATC
28302720 ACATATATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (29 bp):
AAAATTCGGGGCGTTACACGGATAATCCT
Found at i:28302868 original size:56 final size:55
Alignment explanation
Indices: 28302765--28302979 Score: 213
Period size: 55 Copynumber: 3.9 Consensus size: 55
28302755 TCTTACATAT
** * * *
28302765 AATCACATATCGATGCC-ACTGT-CCAGACAGGGTCTTACACACACACATTTATTGA
1 AATCACATATCGATGCCAAC-GTATAAAACATGGTCTTACTCACACACA-TTATTGA
* * *
28302820 AATCACATATTGATGCCAACGTATAAAATATGGTCTTACTCACACACA-TATTCA
1 AATCACATATCGATGCCAACGTATAAAACATGGTCTTACTCACACACATTATTGA
* * *
28302874 AAGTCACATATCAATGCCAACGTATAAAACGTGGTCTTACTGACACACA-TATCTCGA
1 AA-TCACATATCGATGCCAACGTATAAAACATGGTCTTACTCACACACATTAT-T-GA
* * * * *
28302931 AGTCACATACCGATGCCAATGAATAAAACATGGTCTTACTCGCACACAT
1 AATCACATATCGATGCCAACGTATAAAACATGGTCTTACTCACACACAT
28302980 ATATCGATGC
Statistics
Matches: 132, Mismatches: 22, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
54 7 0.05
55 62 0.47
56 61 0.46
57 2 0.02
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (55 bp):
AATCACATATCGATGCCAACGTATAAAACATGGTCTTACTCACACACATTATTGA
Found at i:28302980 original size:56 final size:56
Alignment explanation
Indices: 28302795--28302986 Score: 242
Period size: 56 Copynumber: 3.4 Consensus size: 56
28302785 GTCCAGACAG
* * * * * *
28302795 GGTCTTACACACACACATTTATTGAAATCACATATTGATGCCAACGTATAAAATAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
* * *
28302851 GGTCTTACTCACACACATAT-TCAAAGTCACATATCAATGCCAACGTATAAAACGT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
* * * * *
28302906 GGTCTTACTGACACACATATCTCGAAGTCACATACCGATGCCAATGAATAAAACAT
1 GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
*
28302962 GGTCTTACTCGCACACATATATCGA
1 GGTCTTACTCACACACATATATCGA
28302987 TGCCATGGTC
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
55 47 0.41
56 69 0.59
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCACACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
Found at i:28302997 original size:31 final size:32
Alignment explanation
Indices: 28302959--28303018 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 32
28302949 ATGAATAAAA
*
28302959 CATGGTCTTACTCGCACA-CATATATCGATGC
1 CATGGTCTTACTCGCACATCACATATCGATGC
28302990 CATGGTCTTACTCGCACATCACATATCGA
1 CATGGTCTTACTCGCACATCACATATCGA
28303019 AATCCTATGC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
31 18 0.67
32 9 0.33
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (32 bp):
CATGGTCTTACTCGCACATCACATATCGATGC
Found at i:28304658 original size:29 final size:29
Alignment explanation
Indices: 28304634--28304753 Score: 222
Period size: 29 Copynumber: 4.1 Consensus size: 29
28304624 TCGCACACCC
*
28304634 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
28304663 AGTACCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
28304692 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
28304721 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
28304750 AGTG
1 AGTG
28304754 TCAATCTCGT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:28304659 original size:58 final size:58
Alignment explanation
Indices: 28304597--28304747 Score: 187
Period size: 58 Copynumber: 2.6 Consensus size: 58
28304587 ATTTAAGCCC
* * * *
28304597 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * * **
28304655 GCACACTTAGTACCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
* *
28304713 GCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACTTAGTGCCATACACTTCCAGCATGCACAC
28304748 TTAGTGTCAA
Statistics
Matches: 82, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
58 81 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:28312773 original size:29 final size:29
Alignment explanation
Indices: 28312683--28312865 Score: 184
Period size: 29 Copynumber: 6.5 Consensus size: 29
28312673 ACTCGATTTC
* * **
28312683 GCACACTTAGTGCCATGTGATTT-AAGCCC
1 GCACACTTAGTGCCATAT-ATTTCCAGCAT
* *** *
28312712 GCACACATAGTGCCATACCCTTCGAGC-T
1 GCACACTTAGTGCCATATATTTCCAGCAT
** *
28312740 CGCACACCCAGTGCCGTATATTTCCAGCAT
1 -GCACACTTAGTGCCATATATTTCCAGCAT
28312770 GCACACTTAGTG-CATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
28312798 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
28312827 GCACACTTAGTGCC--ATA--T-CAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCAT
28312851 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
28312866 ATCTCGTCAC
Statistics
Matches: 132, Mismatches: 17, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
24 20 0.15
25 1 0.01
27 3 0.02
28 29 0.22
29 78 0.59
30 1 0.01
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (29 bp):
GCACACTTAGTGCCATATATTTCCAGCAT
Found at i:28312817 original size:57 final size:53
Alignment explanation
Indices: 28312749--28312865 Score: 180
Period size: 57 Copynumber: 2.1 Consensus size: 53
28312739 TCGCACACCC
* *
28312749 AGTGCCGTATATTTCCAGCATGCACACTTAGTGCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTTAGTGC-CATA--T-CAGCATGCACACTT
28312806 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATCAGCATGCACACTT
28312859 AGTGCCA
1 AGTGCCA
28312866 ATCTCGTCAC
Statistics
Matches: 58, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
53 21 0.36
54 1 0.02
56 3 0.05
57 33 0.57
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (53 bp):
AGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATCAGCATGCACACTT
Found at i:28317433 original size:70 final size:71
Alignment explanation
Indices: 28317350--28317512 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
28317340 CGATTTGTCT
28317350 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
28317414 CTTTCA
66 CTTTCA
*
28317420 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
28317485 CTTTCA
66 CTTTCA
28317491 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
28317513 GATACATCTC
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:28317550 original size:71 final size:70
Alignment explanation
Indices: 28317350--28317546 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
28317340 CGATTTGTCT
* * * *
28317350 CGTAGCTCTCTTGTCTACATGGTGTCCGTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
28317414 CTTTCA
65 CTTTCA
* * * *
28317420 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
28317485 CTTTCA
65 CTTTCA
* *
28317491 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
28317547 TACAGGGTGT
Statistics
Matches: 118, Mismatches: 7, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 52 0.44
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:28323956 original size:28 final size:28
Alignment explanation
Indices: 28323910--28323978 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
28323900 TTTAAAACCC
*
28323910 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
28323937 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
28323965 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
28323979 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:28325629 original size:20 final size:20
Alignment explanation
Indices: 28325606--28325643 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
28325596 CACATCCAAA
*
28325606 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
28325626 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
28325644 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:28328941 original size:17 final size:19
Alignment explanation
Indices: 28328921--28328959 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
28328911 AATAACTAAT
28328921 ATAAAT-AAAA-TAGAACA
1 ATAAATAAAAAGTAGAACA
28328938 ATAAATCAAAAAGTAGAACA
1 ATAAAT-AAAAAGTAGAACA
28328958 AT
1 AT
28328960 CAAGAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.67, C:0.08, G:0.08, T:0.18
Consensus pattern (19 bp):
ATAAATAAAAAGTAGAACA
Found at i:28329026 original size:25 final size:25
Alignment explanation
Indices: 28328992--28329042 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
28328982 TATGGAGAAG
28328992 ATAGAACGTGGCGTGTAGAATTCCT
1 ATAGAACGTGGCGTGTAGAATTCCT
28329017 ATAGAACGTGGCGTGTAGAATTCCT
1 ATAGAACGTGGCGTGTAGAATTCCT
28329042 A
1 A
28329043 AGAGACCTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (25 bp):
ATAGAACGTGGCGTGTAGAATTCCT
Found at i:28330376 original size:21 final size:22
Alignment explanation
Indices: 28330336--28330384 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
28330326 TTATTTTCCA
*
28330336 AAATAAATATTATTTATTAATTT
1 AAATAAATATAATTTATTAA-TT
28330359 AAATAAAT-TAATTT-TTAATT
1 AAATAAATATAATTTATTAATT
28330379 AAATAA
1 AAATAA
28330385 TTTTCTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 8 0.32
21 4 0.16
22 5 0.20
23 8 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AAATAAATATAATTTATTAATT
Found at i:28330387 original size:15 final size:16
Alignment explanation
Indices: 28330356--28330388 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
28330346 TATTTATTAA
28330356 TTTAAATAAATTAATT
1 TTTAAATAAATTAATT
*
28330372 TTTAATTAAA-TAATT
1 TTTAAATAAATTAATT
28330387 TT
1 TT
28330389 CTCAACCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTTAAATAAATTAATT
Found at i:28331575 original size:12 final size:12
Alignment explanation
Indices: 28331558--28331582 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
28331548 CCACACATGC
28331558 CCGTGTACTAGG
1 CCGTGTACTAGG
28331570 CCGTGTACTAGG
1 CCGTGTACTAGG
28331582 C
1 C
28331583 TATACCAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24
Consensus pattern (12 bp):
CCGTGTACTAGG
Found at i:28337681 original size:2 final size:2
Alignment explanation
Indices: 28337674--28337706 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
28337664 AAGCTAGCTT
28337674 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
28337707 TAAGTGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:28342842 original size:22 final size:23
Alignment explanation
Indices: 28342817--28342862 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
28342807 CAACCAAATC
28342817 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
28342839 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
28342862 A
1 A
28342863 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:28342868 original size:23 final size:23
Alignment explanation
Indices: 28342824--28342868 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
28342814 ATCAATTCAA
*
28342824 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
28342847 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
28342869 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:28350937 original size:13 final size:14
Alignment explanation
Indices: 28350911--28350956 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
28350901 TTTAACCCTC
28350911 TATTCTTATTCTTTT
1 TATTCTT-TTCTTTT
28350926 TATTC-TTTC-TTT
1 TATTCTTTTCTTTT
*
28350938 TATTTCTTTTATTTT
1 TA-TTCTTTTCTTTT
28350953 TATT
1 TATT
28350957 TTAACTAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
12 5 0.19
13 6 0.22
14 6 0.22
15 10 0.37
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTCTTTTCTTTT
Found at i:28350982 original size:11 final size:11
Alignment explanation
Indices: 28350962--28350990 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
28350952 TTATTTTAAC
28350962 TAAT-ATAATA
1 TAATAATAATA
28350972 TAATAATAATA
1 TAATAATAATA
28350983 TAATAATA
1 TAATAATA
28350991 TTAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
TAATAATAATA
Found at i:28356782 original size:29 final size:29
Alignment explanation
Indices: 28356748--28356879 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
28356738 TACTCGATTT
** * *
28356748 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
28356777 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
28356806 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
28356835 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28356864 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28356880 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:28364515 original size:29 final size:29
Alignment explanation
Indices: 28364481--28364612 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
28364471 TACTCGATTT
** * *
28364481 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* **** * *
28364510 CGCACACATAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
28364539 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
28364568 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
28364597 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
28364613 ATCTCGTCAC
Statistics
Matches: 86, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
28 2 0.02
29 84 0.98
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:28370799 original size:27 final size:27
Alignment explanation
Indices: 28370769--28370830 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
28370759 CCCCAGTTTA
* *
28370769 TAAAATGACCGTAATACCCCTGTACGG
1 TAAAATGACCGTAATACCCCTATACAG
*
28370796 TAAAATGACCGTAATACCCCTATATAG
1 TAAAATGACCGTAATACCCCTATACAG
28370823 TAAAATGA
1 TAAAATGA
28370831 TAATTATGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTATACAG
Found at i:28372343 original size:20 final size:20
Alignment explanation
Indices: 28372318--28372365 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
28372308 CAGTGGTGCT
28372318 TCTGTCAATAAAGCCTTTAA
1 TCTGTCAATAAAGCCTTTAA
28372338 TCTGTCAATAAAGCCTTTAA
1 TCTGTCAATAAAGCCTTTAA
28372358 TCTGTCAA
1 TCTGTCAA
28372366 AGCTCTACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.35
Consensus pattern (20 bp):
TCTGTCAATAAAGCCTTTAA
Found at i:28374314 original size:40 final size:41
Alignment explanation
Indices: 28374264--28374348 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
28374254 ACTCGGTTAT
* * *
28374264 GTATGGCACTTAATGTGC-A-ATTCAAGATAGCTTCGGCTAC
1 GTATAGCACTTAATGTGCTAGATT-AAAATAGCTTCAGCTAC
* *
28374304 GTATAGCACTTAGTGTGCTAGATTAAAATAGCTTCAGCTAT
1 GTATAGCACTTAATGTGCTAGATTAAAATAGCTTCAGCTAC
28374345 GTAT
1 GTAT
28374349 TGTTAGTGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
40 16 0.42
41 19 0.50
42 3 0.08
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.33
Consensus pattern (41 bp):
GTATAGCACTTAATGTGCTAGATTAAAATAGCTTCAGCTAC
Found at i:28380157 original size:40 final size:39
Alignment explanation
Indices: 28379989--28380159 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
28379979 AGAAATTGAA
* *
28379989 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
28380029 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
28380069 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
28380109 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
28380149 TGATATCCGGG
1 TGATATCCGGG
28380160 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:28388257 original size:40 final size:39
Alignment explanation
Indices: 28388089--28388259 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
28388079 AGAAATTGAA
* *
28388089 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
28388129 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
28388169 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
28388209 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
28388249 TGATATCCGGG
1 TGATATCCGGG
28388260 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:28405238 original size:56 final size:56
Alignment explanation
Indices: 28405147--28405299 Score: 147
Period size: 56 Copynumber: 2.8 Consensus size: 56
28405137 GATGACATGA
* ** * *
28405147 TACATGCTAGGTCCGAAAGC-TGTGTAGCCCCGTTGAGAGGCAT-GTAATTATG-TGG
1 TACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAA-TATGAT-G
**
28405202 TACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGTGTGGTAATATGATG
1 TACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATATGATG
*
28405258 --C-CTGCTAGGTCCGGGTGCTCATATGTAGCCCTGTTGAGAGGC
1 TACAC-GCTAGGTCCGGGAGCT--TATGTAGCCCTGTTGAGAGGC
28405300 GTGCTATGTC
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
53 1 0.01
54 16 0.19
55 17 0.20
56 44 0.53
57 5 0.06
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (56 bp):
TACACGCTAGGTCCGGGAGCTTATGTAGCCCTGTTGAGAGGCATGGTAATATGATG
Found at i:28406751 original size:23 final size:23
Alignment explanation
Indices: 28406721--28406798 Score: 101
Period size: 23 Copynumber: 3.6 Consensus size: 23
28406711 GTTTAAACCT
28406721 CACACGCCCGTGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATG
**
28406744 CACACGCCCGTGT----GCTTTG
1 CACACGCCCGTGTGGAGGCAATG
*
28406763 AACACGCCCGTGTGGAGGCAATG
1 CACACGCCCGTGTGGAGGCAATG
28406786 CACACGCCCGTGT
1 CACACGCCCGTGT
28406799 ACTTTGAACA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
19 16 0.36
23 29 0.64
ACGTcount: A:0.19, C:0.33, G:0.31, T:0.17
Consensus pattern (23 bp):
CACACGCCCGTGTGGAGGCAATG
Found at i:28406769 original size:19 final size:19
Alignment explanation
Indices: 28406745--28406817 Score: 65
Period size: 19 Copynumber: 3.6 Consensus size: 19
28406735 GAGGCAATGC
28406745 ACACGCCCGTGTGCTTTGA
1 ACACGCCCGTGTGCTTTGA
** *
28406764 ACACGCCCGTGTGGAGGCAATGC
1 ACACGCCCGTGT----GCTTTGA
*
28406787 ACACGCCCGTGTACTTTGA
1 ACACGCCCGTGTGCTTTGA
*
28406806 ACACTCCCGTGT
1 ACACGCCCGTGT
28406818 CCTTCACCCA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
19 26 0.62
23 16 0.38
ACGTcount: A:0.19, C:0.33, G:0.26, T:0.22
Consensus pattern (19 bp):
ACACGCCCGTGTGCTTTGA
Found at i:28406781 original size:42 final size:42
Alignment explanation
Indices: 28406722--28406817 Score: 174
Period size: 42 Copynumber: 2.3 Consensus size: 42
28406712 TTTAAACCTC
*
28406722 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTGCTTTGA
1 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGA
28406764 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGA
1 ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGA
*
28406806 ACACTCCCGTGT
1 ACACGCCCGTGT
28406818 CCTTCACCCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (42 bp):
ACACGCCCGTGTGGAGGCAATGCACACGCCCGTGTACTTTGA
Found at i:28408577 original size:40 final size:40
Alignment explanation
Indices: 28408566--28408712 Score: 267
Period size: 40 Copynumber: 3.7 Consensus size: 40
28408556 GTAATTCTTG
* *
28408566 CAAATGCCTTCGGGACTTAACCCGGATTTGGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
*
28408606 CAATTGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
28408646 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
28408686 CAAATGCCTTCGGGAATTAACCCGGAT
1 CAAATGCCTTCGGGAATTAACCCGGAT
28408713 ATCATTCGAA
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGAATTAACCCGGATTTAGTAACTCGCA
Found at i:28413240 original size:107 final size:107
Alignment explanation
Indices: 28413120--28413321 Score: 280
Period size: 107 Copynumber: 1.9 Consensus size: 107
28413110 ATGATCCATT
** * * *
28413120 TCATCAGTATAGAGTATTCAGTCATTTCACCAGTTCACGATGCTACTCACACAAGCTGTCGAGAA
1 TCATCAGTATAGAGTAGCCAGTCAATTCACCAGTTCACGATGCTACTCACACAAGCTATCAAGAA
* *
28413185 TCCGCAACATATGTAGGATCTCAGCCATCGGAACGGTCTATG
66 TCCACAACATATGCAGGATCTCAGCCATCGGAACGGTCTATG
* * * * *
28413227 TCATCA-TATTAGAGTAGCCATTTAATTCACCAGTTCACGATGTTGCTCACACAAGCTATTAAGA
1 TCATCAGTA-TAGAGTAGCCAGTCAATTCACCAGTTCACGATGCTACTCACACAAGCTATCAAGA
28413291 ATCCACAACATATGCAGGATCTCAGCCATCG
65 ATCCACAACATATGCAGGATCTCAGCCATCG
28413322 TGATGGTGTG
Statistics
Matches: 82, Mismatches: 12, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
106 2 0.02
107 80 0.98
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (107 bp):
TCATCAGTATAGAGTAGCCAGTCAATTCACCAGTTCACGATGCTACTCACACAAGCTATCAAGAA
TCCACAACATATGCAGGATCTCAGCCATCGGAACGGTCTATG
Found at i:28419250 original size:52 final size:52
Alignment explanation
Indices: 28419172--28419276 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
28419162 GTTCAGCATG
28419172 ATAAGGAAGATCTAGGGTTGATTTACTTTGTTCGTTGCCCCCGTCTTATTCA
1 ATAAGGAAGATCTAGGGTTGATTTACTTTGTTCGTTGCCCCCGTCTTATTCA
28419224 ATAAGGAAGATCTAGGGTTGATTTACTTTGTTCGTTGCCCCCGTCTTATTCA
1 ATAAGGAAGATCTAGGGTTGATTTACTTTGTTCGTTGCCCCCGTCTTATTCA
28419276 A
1 A
28419277 CCTTTAGAGA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (52 bp):
ATAAGGAAGATCTAGGGTTGATTTACTTTGTTCGTTGCCCCCGTCTTATTCA
Found at i:28421912 original size:6 final size:6
Alignment explanation
Indices: 28421898--28421931 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
28421888 AATAGTAATT
* *
28421898 AGTAAC AGTAGC AGTAAC AGTAAC AGCAAC AGTA
1 AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTA
28421932 TTCAACACAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.15
Consensus pattern (6 bp):
AGTAAC
Found at i:28421961 original size:45 final size:45
Alignment explanation
Indices: 28421909--28422015 Score: 151
Period size: 45 Copynumber: 2.4 Consensus size: 45
28421899 GTAACAGTAG
28421909 CAGTAACAGTAACAGCAACAGTATTCAACACACAAAGTGCTGAAT
1 CAGTAACAGTAACAGCAACAGTATTCAACACACAAAGTGCTGAAT
* * * * * *
28421954 CTGTAACAGTAACGGTAACAGTATTCGACATACAAAGTGTTGAAT
1 CAGTAACAGTAACAGCAACAGTATTCAACACACAAAGTGCTGAAT
*
28421999 CAGTAGCAGTAACAGCA
1 CAGTAACAGTAACAGCA
28422016 GATAAGTGCC
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGCAACAGTATTCAACACACAAAGTGCTGAAT
Found at i:28423108 original size:19 final size:17
Alignment explanation
Indices: 28423074--28423110 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
28423064 GTTTCTTTGT
28423074 TTTTCTTTTATATTTTA
1 TTTTCTTTTATATTTTA
28423091 TTTTCTTTGTATTATTTTA
1 TTTTCTTT-TA-TATTTTA
28423110 T
1 T
28423111 CATTTAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTCTTTTATATTTTA
Found at i:28425841 original size:22 final size:22
Alignment explanation
Indices: 28425813--28425859 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
28425803 CTATAACCAA
28425813 GTTTGAGCATTGCTTAGACTTG
1 GTTTGAGCATTGCTTAGACTTG
28425835 GTTTGAGCATTGCTTAGACTTG
1 GTTTGAGCATTGCTTAGACTTG
28425857 GTT
1 GTT
28425860 GGTGTCCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.13, G:0.28, T:0.43
Consensus pattern (22 bp):
GTTTGAGCATTGCTTAGACTTG
Found at i:28426305 original size:5 final size:5
Alignment explanation
Indices: 28426295--28426327 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
28426285 TTGTGTGTTC
28426295 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
28426328 CAAAGCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:28427093 original size:24 final size:25
Alignment explanation
Indices: 28427047--28427093 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
28427037 GTTTGTGAAT
*
28427047 ATTATATTATTTATAACATATAAAA
1 ATTATATTATTTATAACACATAAAA
*
28427072 ATTATATT-TTTATAATACATAA
1 ATTATATTATTTATAACACATAA
28427094 TACTATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATATTATTTATAACACATAAAA
Found at i:28427101 original size:26 final size:25
Alignment explanation
Indices: 28427044--28427103 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
28427034 TAGGTTTGTG
*
28427044 AATATTATATTATTTATAACATATA
1 AATATTATATTATTTATAACACATA
* *
28427069 AAAATTATATT-TTTATAATACATA
1 AATATTATATTATTTATAACACATA
28427093 ATACTATTATA
1 A-A-TATTATA
28427104 ATGTAAACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 12 0.41
25 11 0.38
26 6 0.21
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (25 bp):
AATATTATATTATTTATAACACATA
Found at i:28434120 original size:21 final size:21
Alignment explanation
Indices: 28434094--28434139 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
28434084 CTTTGACAAA
**
28434094 AAAAAAATTAAAATCAAAAAC
1 AAAAAAACCAAAATCAAAAAC
* *
28434115 AAAAAACCCAAAATCAAAATC
1 AAAAAAACCAAAATCAAAAAC
28434136 AAAA
1 AAAA
28434140 TCAAAATTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (21 bp):
AAAAAAACCAAAATCAAAAAC
Found at i:28435052 original size:19 final size:18
Alignment explanation
Indices: 28435028--28435066 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
28435018 TCCGATCCAA
*
28435028 TTAAAAAATTATTAAAATT
1 TTAAAAAATT-TCAAAATT
28435047 TTAAAAAATTTCAAAATT
1 TTAAAAAATTTCAAAATT
28435065 TT
1 TT
28435067 GGTTTAATCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAAAAAATTTCAAAATT
Found at i:28438291 original size:2 final size:2
Alignment explanation
Indices: 28438279--28438308 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
28438269 ACTTTAATAC
*
28438279 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28438309 CCCTTTCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:28447361 original size:38 final size:38
Alignment explanation
Indices: 28447318--28447393 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
28447308 AATAATTAAA
28447318 TATTTCATAAAAAATAATTATTAAAAAATAAACATTTT
1 TATTTCATAAAAAATAATTATTAAAAAATAAACATTTT
28447356 TATTTCATAAAAAATAATTATTAAAAAATAAACATTTT
1 TATTTCATAAAAAATAATTATTAAAAAATAAACATTTT
28447394 CTTTAATTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (38 bp):
TATTTCATAAAAAATAATTATTAAAAAATAAACATTTT
Found at i:28454044 original size:53 final size:50
Alignment explanation
Indices: 28453949--28454101 Score: 152
Period size: 47 Copynumber: 3.0 Consensus size: 50
28453939 GACAACATGA
* * *
28453949 GATATGTGCTTCCGTATAAGACCATAGTTAGGCTATGACATCGGTGAGATTT
1 GATATGTGCTTCCGTATAAGACCATA-TTGGGATATGGCATCGGTG-GATTT
*
28454001 GATTATGTACTTCCGTATAAGACCATATATGGGATATGGCATCGGT-GA--T
1 GA-TATGTGCTTCCGTATAAGACCATAT-TGGGATATGGCATCGGTGGATTT
* * * *
28454050 -ATATGTGCTTCTGTGTAAGACCATATCTGGCATATGGCATCAGTGTGATTT
1 GATATGTGCTTCCGTATAAGACCATAT-TGGGATATGGCATCGGTG-GATTT
28454101 G
1 G
28454102 TGATCTGTGT
Statistics
Matches: 84, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
47 37 0.44
48 1 0.01
49 3 0.04
51 3 0.04
52 3 0.04
53 37 0.44
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (50 bp):
GATATGTGCTTCCGTATAAGACCATATTGGGATATGGCATCGGTGGATTT
Found at i:28454073 original size:47 final size:48
Alignment explanation
Indices: 28454000--28454119 Score: 149
Period size: 47 Copynumber: 2.6 Consensus size: 48
28453990 CGGTGAGATT
* * * *
28454000 TGATTATGTACTTCCGTATAAGACCATATATGGGATATGGCATC-G-G
1 TGATTATGTGCTTCTGTGTAAGACCATATATGGCATATGGCATCAGTG
*
28454046 TGATATATGTGCTTCTGTGTAAGACCATATCTGGCATATGGCATCAGTG
1 TGAT-TATGTGCTTCTGTGTAAGACCATATATGGCATATGGCATCAGTG
*
28454095 TGATT-TGTG-ATCTGTGTAAGACCAT
1 TGATTATGTGCTTCTGTGTAAGACCAT
28454120 GGCTGGGCTA
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
46 19 0.29
47 39 0.60
48 2 0.03
49 5 0.08
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (48 bp):
TGATTATGTGCTTCTGTGTAAGACCATATATGGCATATGGCATCAGTG
Found at i:28462701 original size:48 final size:48
Alignment explanation
Indices: 28462630--28463532 Score: 1554
Period size: 48 Copynumber: 18.8 Consensus size: 48
28462620 TGTACAAGAT
* *
28462630 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28462678 AAATATATATGAGATATGTATATGTGGTAAAGCCGAATGACTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
28462726 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
28462774 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
28462822 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
28462870 AAATATGTATGAGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28462918 AAATATGTACGAGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28462966 AAATATGTACGAGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463014 AAATATGTACGAGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463062 AAATATGTACGAGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463110 AAATATGTACGAGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* * *
28463158 AAATATGTACGAGATATGTATATGTGGTAGAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463206 AAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463254 AAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463302 AAATATGTACGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
28463350 AAATATCTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
* *
28463398 AAATATCTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
*
28463446 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
28463494 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATG
28463533 ACCTAATGTG
Statistics
Matches: 842, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 842 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
Done.