Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 1 of 328
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--10900 Score: 20905
Period size: 7 Copynumber: 1558.6 Consensus size: 7
1 AACCCTA
1 AACCCTA
8 AACCCTA
1 AACCCTA
15 AACCCTA
1 AACCCTA
22 AACCCTA
1 AACCCTA
29 AACCCTA
1 AACCCTA
36 AACCCTA
1 AACCCTA
43 AACCCTA
1 AACCCTA
50 AACCCTA
1 AACCCTA
57 AACCCTA
1 AACCCTA
64 AACCCTA
1 AACCCTA
71 AACCCTA
1 AACCCTA
78 AACCCTA
1 AACCCTA
85 AACCCTA
1 AACCCTA
92 AACCCTA
1 AACCCTA
99 AACCCTA
1 AACCCTA
106 CACACCACTA
1 -A-ACC-CTA
**
116 CCCCCT-
1 AACCCTA
*
122 ACCTCCT-
1 AAC-CCTA
*
129 -ACCCCA
1 AACCCTA
*
135 ACCACCATA
1 A--ACCCTA
*
144 ACTCCTCACTA
1 A--AC-C-CTA
* *
155 AACACAATC
1 AAC-C-CTA
164 AACCCT-
1 AACCCTA
*
170 --CCATCA
1 AACCCT-A
*
176 AACCCCCA
1 AA-CCCTA
** *
184 CCCCCCA
1 AACCCTA
*
191 CACCCCTA
1 -AACCCTA
*
199 CACCC--
1 AACCCTA
204 -ACCCTA
1 AACCCTA
*
210 AACCATCAAA
1 AACC--C-TA
* *
220 AATCATA
1 AACCCTA
227 AA---TA
1 AACCCTA
231 ATCACCC--
1 A--ACCCTA
*
238 AACCACAAAA
1 AACC-C--TA
*
248 AATCC-A
1 AACCCTA
254 AA--CTA
1 AACCCTA
259 CAACCCTA
1 -AACCCTA
*
267 AACCCAA
1 AACCCTA
274 AACCC-A
1 AACCCTA
*
280 AACCCCCA
1 AA-CCCTA
* *
288 TACCCAA
1 AACCCTA
295 AACACC-A
1 AAC-CCTA
302 AACCC-A
1 AACCCTA
308 AA-CC-A
1 AACCCTA
*
313 CAACCCAA
1 -AACCCTA
*
321 AACCCAA
1 AACCCTA
*
328 AACCCAA
1 AACCCTA
335 AACCCTA
1 AACCCTA
342 AACCCTA
1 AACCCTA
349 AACCCTA
1 AACCCTA
356 AACCCTA
1 AACCCTA
363 AACCCTA
1 AACCCTA
370 AACCCTA
1 AACCCTA
377 AACCCTA
1 AACCCTA
384 AACCCTA
1 AACCCTA
391 AACCCTA
1 AACCCTA
398 AACCCTA
1 AACCCTA
405 AACCCTA
1 AACCCTA
412 AACCCTA
1 AACCCTA
419 AACCCTA
1 AACCCTA
426 AACCCTA
1 AACCCTA
433 AACCCTA
1 AACCCTA
440 AACCCTA
1 AACCCTA
447 AACCCTA
1 AACCCTA
454 AACCCTA
1 AACCCTA
461 AACCCTA
1 AACCCTA
468 AACCCTA
1 AACCCTA
475 AACCCTA
1 AACCCTA
482 AACCCTA
1 AACCCTA
489 AACCCTA
1 AACCCTA
496 AACCCTA
1 AACCCTA
503 AACCCTA
1 AACCCTA
510 AACCCTA
1 AACCCTA
517 AACCCTA
1 AACCCTA
524 AACCCTA
1 AACCCTA
531 AACCCTA
1 AACCCTA
538 AACCCTA
1 AACCCTA
545 AACCCTA
1 AACCCTA
552 AACCCTA
1 AACCCTA
559 AACCCTA
1 AACCCTA
566 AACCCTA
1 AACCCTA
573 AACCCTA
1 AACCCTA
580 AACCCTA
1 AACCCTA
587 AACCCTA
1 AACCCTA
594 AACCCTA
1 AACCCTA
601 AACCCTA
1 AACCCTA
608 AACCCTA
1 AACCCTA
615 AACCCTA
1 AACCCTA
622 AACCCTA
1 AACCCTA
629 AACCCTA
1 AACCCTA
636 AACCCTA
1 AACCCTA
643 AACCCTA
1 AACCCTA
650 AACCCTA
1 AACCCTA
657 AACCCTA
1 AACCCTA
664 AACCCTA
1 AACCCTA
671 AACCCTA
1 AACCCTA
678 AACCCTA
1 AACCCTA
685 AACCCTA
1 AACCCTA
692 AACCCTA
1 AACCCTA
699 AACCCTA
1 AACCCTA
706 AACCCTA
1 AACCCTA
713 AACCCTA
1 AACCCTA
720 AACCCTA
1 AACCCTA
727 AACCCTA
1 AACCCTA
734 AACCCTA
1 AACCCTA
741 AACCCTA
1 AACCCTA
748 AACCCTA
1 AACCCTA
755 AACCCTA
1 AACCCTA
762 AACCCTA
1 AACCCTA
769 AACCCTA
1 AACCCTA
776 AACCCTA
1 AACCCTA
783 AACCCTA
1 AACCCTA
790 AACCCTA
1 AACCCTA
797 AACCCTA
1 AACCCTA
804 AACCCTA
1 AACCCTA
811 AACCCTA
1 AACCCTA
818 AACCCTA
1 AACCCTA
825 AACCCTA
1 AACCCTA
832 AACCCTA
1 AACCCTA
839 AACCCTA
1 AACCCTA
846 AACCCTA
1 AACCCTA
853 AACCCTA
1 AACCCTA
860 AACCCTA
1 AACCCTA
867 AACCCTA
1 AACCCTA
874 AACCCTA
1 AACCCTA
881 AACCCTA
1 AACCCTA
888 AACCCTA
1 AACCCTA
895 AACCCTA
1 AACCCTA
902 AACCCTA
1 AACCCTA
909 AACCCTA
1 AACCCTA
916 AACCCTA
1 AACCCTA
923 AACCCTA
1 AACCCTA
930 AACCCTA
1 AACCCTA
937 AACCCTA
1 AACCCTA
944 AACCCTA
1 AACCCTA
951 AACCCTA
1 AACCCTA
958 AACCCTA
1 AACCCTA
965 AACCCTA
1 AACCCTA
972 AACCCTA
1 AACCCTA
979 AACCCTA
1 AACCCTA
986 AACCCTA
1 AACCCTA
993 AACCCTA
1 AACCCTA
1000 AACCCTA
1 AACCCTA
1007 AACCCTA
1 AACCCTA
1014 AACCCTA
1 AACCCTA
1021 AACCCTA
1 AACCCTA
1028 AACCCTA
1 AACCCTA
1035 AACCCTA
1 AACCCTA
1042 AACCCTA
1 AACCCTA
1049 AACCCTA
1 AACCCTA
1056 AACCCTA
1 AACCCTA
1063 AACCCTA
1 AACCCTA
1070 AACCCTA
1 AACCCTA
1077 AACCCTA
1 AACCCTA
1084 AACCCTA
1 AACCCTA
1091 AACCCTA
1 AACCCTA
1098 AACCCTA
1 AACCCTA
1105 AACCCTA
1 AACCCTA
1112 AACCCTA
1 AACCCTA
1119 AACCCTA
1 AACCCTA
1126 AACCCTA
1 AACCCTA
1133 AACCCTA
1 AACCCTA
1140 AACCCTA
1 AACCCTA
1147 AACCCTA
1 AACCCTA
1154 AACCCTA
1 AACCCTA
1161 AACCCTA
1 AACCCTA
1168 AACCCTA
1 AACCCTA
1175 AACCCTA
1 AACCCTA
1182 AACCCTA
1 AACCCTA
1189 AACCCTA
1 AACCCTA
1196 AACCCTA
1 AACCCTA
1203 AACCCTA
1 AACCCTA
1210 AACCCTA
1 AACCCTA
1217 AACCCTA
1 AACCCTA
1224 AACCCTA
1 AACCCTA
1231 AACCCTA
1 AACCCTA
1238 AACCCTA
1 AACCCTA
1245 AACCCTA
1 AACCCTA
1252 AACCCTA
1 AACCCTA
1259 AACCCTA
1 AACCCTA
1266 AACCCTA
1 AACCCTA
1273 AACCCTA
1 AACCCTA
1280 AACCCTA
1 AACCCTA
1287 AACCCTA
1 AACCCTA
1294 AACCCTA
1 AACCCTA
1301 AACCCTA
1 AACCCTA
1308 AACCCTA
1 AACCCTA
1315 AACCCTA
1 AACCCTA
1322 AACCCTA
1 AACCCTA
1329 AACCCTA
1 AACCCTA
1336 AACCCTA
1 AACCCTA
1343 AACCCTA
1 AACCCTA
1350 AACCCTA
1 AACCCTA
1357 AACCCTA
1 AACCCTA
1364 AACCCTA
1 AACCCTA
1371 AACCCTA
1 AACCCTA
1378 AACCCTA
1 AACCCTA
1385 AACCCTA
1 AACCCTA
1392 AACCCTA
1 AACCCTA
1399 AACCCTA
1 AACCCTA
1406 AACCCTA
1 AACCCTA
1413 AACCCTA
1 AACCCTA
1420 AACCCTA
1 AACCCTA
1427 AACCCTA
1 AACCCTA
1434 AACCCTA
1 AACCCTA
1441 AACCCTA
1 AACCCTA
1448 AACCCTA
1 AACCCTA
1455 AACCCTA
1 AACCCTA
1462 AACCCTA
1 AACCCTA
1469 AACCCTA
1 AACCCTA
1476 AACCCTA
1 AACCCTA
1483 AACCCTA
1 AACCCTA
1490 AACCCTA
1 AACCCTA
1497 AACCCTA
1 AACCCTA
1504 AACCCTA
1 AACCCTA
1511 AACCCTA
1 AACCCTA
1518 AACCCTA
1 AACCCTA
1525 AACCCTA
1 AACCCTA
1532 AACCCTA
1 AACCCTA
1539 AACCCTA
1 AACCCTA
1546 AACCCTA
1 AACCCTA
1553 AACCCTA
1 AACCCTA
1560 AACCCTA
1 AACCCTA
1567 AACCCTA
1 AACCCTA
1574 AACCCTA
1 AACCCTA
1581 AACCCTA
1 AACCCTA
1588 AACCCTA
1 AACCCTA
1595 AACCCTA
1 AACCCTA
1602 AACCCTA
1 AACCCTA
1609 AACCCTA
1 AACCCTA
1616 AACCCTA
1 AACCCTA
1623 AACCCTA
1 AACCCTA
1630 AACCCTA
1 AACCCTA
1637 AACCCTA
1 AACCCTA
1644 AACCCTA
1 AACCCTA
1651 AACCCTA
1 AACCCTA
1658 AACCCTA
1 AACCCTA
1665 AACCCTA
1 AACCCTA
1672 AACCCTA
1 AACCCTA
1679 AACCCTA
1 AACCCTA
1686 AACCCTA
1 AACCCTA
1693 AACCCTA
1 AACCCTA
1700 AACCCTA
1 AACCCTA
1707 AACCCTA
1 AACCCTA
1714 AACCCTA
1 AACCCTA
1721 AACCCTA
1 AACCCTA
1728 AACCCTA
1 AACCCTA
1735 AACCCTA
1 AACCCTA
1742 AACCCTA
1 AACCCTA
1749 AACCCTA
1 AACCCTA
1756 AACCCTA
1 AACCCTA
1763 AACCCTA
1 AACCCTA
1770 AACCCTA
1 AACCCTA
1777 AACCCTA
1 AACCCTA
1784 AACCCTA
1 AACCCTA
1791 AACCCTA
1 AACCCTA
1798 AACCCTA
1 AACCCTA
1805 AACCCTA
1 AACCCTA
1812 AACCCTA
1 AACCCTA
1819 AACCCTA
1 AACCCTA
1826 AACCCTA
1 AACCCTA
1833 AACCCTA
1 AACCCTA
1840 AACCCTA
1 AACCCTA
1847 AACCCTA
1 AACCCTA
1854 AACCCTA
1 AACCCTA
1861 AACCCTA
1 AACCCTA
1868 AACCCTA
1 AACCCTA
1875 AACCCTA
1 AACCCTA
1882 AACCCTA
1 AACCCTA
1889 AACCCTA
1 AACCCTA
1896 AACCCTA
1 AACCCTA
1903 AACCCTA
1 AACCCTA
1910 AACCCTA
1 AACCCTA
1917 AACCCTA
1 AACCCTA
1924 AACCCTA
1 AACCCTA
1931 AACCCTA
1 AACCCTA
1938 AACCCTA
1 AACCCTA
1945 AACCCTA
1 AACCCTA
1952 AACCCTA
1 AACCCTA
1959 AACCCTA
1 AACCCTA
1966 AACCCTA
1 AACCCTA
1973 AACCCTA
1 AACCCTA
1980 AACCCTA
1 AACCCTA
1987 AACCCTA
1 AACCCTA
1994 AACCCTA
1 AACCCTA
2001 AACCCTA
1 AACCCTA
2008 AACCCTA
1 AACCCTA
2015 AACCCTA
1 AACCCTA
2022 AACCCTA
1 AACCCTA
2029 AACCCTA
1 AACCCTA
2036 AACCCTA
1 AACCCTA
2043 AACCCTA
1 AACCCTA
2050 AACCCTA
1 AACCCTA
2057 AACCCTA
1 AACCCTA
2064 AACCCTA
1 AACCCTA
2071 AACCCTA
1 AACCCTA
2078 AACCCTA
1 AACCCTA
2085 AACCCTA
1 AACCCTA
2092 AACCCTA
1 AACCCTA
2099 AACCCTA
1 AACCCTA
2106 AACCCTA
1 AACCCTA
2113 AACCCTA
1 AACCCTA
2120 AACCCTA
1 AACCCTA
2127 AACCCTA
1 AACCCTA
2134 AACCCTA
1 AACCCTA
2141 AACCCTA
1 AACCCTA
2148 AACCCTA
1 AACCCTA
2155 AACCCTA
1 AACCCTA
2162 AACCCTA
1 AACCCTA
2169 AACCCTA
1 AACCCTA
2176 AACCCTA
1 AACCCTA
2183 AACCCTA
1 AACCCTA
2190 AACCCTA
1 AACCCTA
2197 AACCCTA
1 AACCCTA
2204 AACCCTA
1 AACCCTA
2211 AACCCTA
1 AACCCTA
2218 AACCCTA
1 AACCCTA
2225 AACCCTA
1 AACCCTA
2232 AACCCTA
1 AACCCTA
2239 AACCCTA
1 AACCCTA
2246 AACCCTA
1 AACCCTA
2253 AACCCTA
1 AACCCTA
2260 AACCCTA
1 AACCCTA
2267 AACCCTA
1 AACCCTA
2274 AACCCTA
1 AACCCTA
2281 AACCCTA
1 AACCCTA
2288 AACCCTA
1 AACCCTA
2295 AACCCTA
1 AACCCTA
2302 AACCCTA
1 AACCCTA
2309 AACCCTA
1 AACCCTA
2316 AACCCTA
1 AACCCTA
2323 AACCCTA
1 AACCCTA
2330 AACCCTA
1 AACCCTA
2337 AACCCTA
1 AACCCTA
2344 AACCCTA
1 AACCCTA
2351 AACCCTA
1 AACCCTA
2358 AACCCTA
1 AACCCTA
2365 AACCCTA
1 AACCCTA
2372 AACCCTA
1 AACCCTA
2379 AACCCTA
1 AACCCTA
2386 AACCCTA
1 AACCCTA
2393 AACCCTA
1 AACCCTA
2400 AACCCTA
1 AACCCTA
2407 AACCCTA
1 AACCCTA
2414 AACCCTA
1 AACCCTA
2421 AACCCTA
1 AACCCTA
2428 AACCCTA
1 AACCCTA
2435 AACCCTA
1 AACCCTA
2442 AACCCTA
1 AACCCTA
2449 AACCCTA
1 AACCCTA
2456 AACCCTA
1 AACCCTA
2463 AACCCTA
1 AACCCTA
2470 AACCCTA
1 AACCCTA
2477 AACCCTA
1 AACCCTA
2484 AACCCTA
1 AACCCTA
2491 AACCCTA
1 AACCCTA
2498 AACCCTA
1 AACCCTA
2505 AACCCTA
1 AACCCTA
2512 AACCCTA
1 AACCCTA
2519 AACCCTA
1 AACCCTA
2526 AACCCTA
1 AACCCTA
2533 AACCCTA
1 AACCCTA
2540 AACCCTA
1 AACCCTA
2547 AACCCTA
1 AACCCTA
2554 AACCCTA
1 AACCCTA
2561 AACCCTA
1 AACCCTA
2568 AACCCTA
1 AACCCTA
2575 AACCCTA
1 AACCCTA
2582 AACCCTA
1 AACCCTA
2589 AACCCTA
1 AACCCTA
2596 AACCCTA
1 AACCCTA
2603 AACCCTA
1 AACCCTA
2610 AACCCTA
1 AACCCTA
2617 AACCCTA
1 AACCCTA
2624 AACCCTA
1 AACCCTA
2631 AACCCTA
1 AACCCTA
2638 AACCCTA
1 AACCCTA
2645 AACCCTA
1 AACCCTA
2652 AACCCTA
1 AACCCTA
2659 AACCCTA
1 AACCCTA
2666 AACCCTA
1 AACCCTA
2673 AACCCTA
1 AACCCTA
2680 AACCCTA
1 AACCCTA
2687 AACCCTA
1 AACCCTA
2694 AACCCTA
1 AACCCTA
2701 AACCCTA
1 AACCCTA
2708 AACCCTA
1 AACCCTA
2715 AACCCTA
1 AACCCTA
2722 AACCCTA
1 AACCCTA
2729 AACCCTA
1 AACCCTA
2736 AACCCTA
1 AACCCTA
2743 AACCCTA
1 AACCCTA
2750 AACCCTA
1 AACCCTA
2757 AACCCTA
1 AACCCTA
2764 AACCCTA
1 AACCCTA
2771 AACCCTA
1 AACCCTA
2778 AACCCTA
1 AACCCTA
2785 AACCCTA
1 AACCCTA
2792 AACCCTA
1 AACCCTA
2799 AACCCTA
1 AACCCTA
2806 AACCCTA
1 AACCCTA
2813 AACCCTA
1 AACCCTA
2820 AACCCTA
1 AACCCTA
2827 AACCCTA
1 AACCCTA
2834 AACCCTA
1 AACCCTA
2841 AACCCTA
1 AACCCTA
2848 AACCCTA
1 AACCCTA
2855 AACCCTA
1 AACCCTA
2862 AACCCTA
1 AACCCTA
2869 AACCCTA
1 AACCCTA
2876 AACCCTA
1 AACCCTA
2883 AACCCTA
1 AACCCTA
2890 AACCCTA
1 AACCCTA
2897 AACCCTA
1 AACCCTA
2904 AACCCTA
1 AACCCTA
2911 AACCCTA
1 AACCCTA
2918 AACCCTA
1 AACCCTA
2925 AACCCTA
1 AACCCTA
2932 AACCCTA
1 AACCCTA
2939 AACCCTA
1 AACCCTA
2946 AACCCTA
1 AACCCTA
2953 AACCCTA
1 AACCCTA
2960 AACCCTA
1 AACCCTA
2967 AACCCTA
1 AACCCTA
2974 AACCCTA
1 AACCCTA
2981 AACCCTA
1 AACCCTA
2988 AACCCTA
1 AACCCTA
2995 AACCCTA
1 AACCCTA
3002 AACCCTA
1 AACCCTA
3009 AACCCTA
1 AACCCTA
3016 AACCCTA
1 AACCCTA
3023 AACCCTA
1 AACCCTA
3030 AACCCTA
1 AACCCTA
3037 AACCCTA
1 AACCCTA
3044 AACCCTA
1 AACCCTA
3051 AACCCTA
1 AACCCTA
3058 AACCCTA
1 AACCCTA
3065 AACCCTA
1 AACCCTA
3072 AACCCTA
1 AACCCTA
3079 AACCCTA
1 AACCCTA
3086 AACCCTA
1 AACCCTA
3093 AACCCTA
1 AACCCTA
3100 AACCCTA
1 AACCCTA
3107 AACCCTA
1 AACCCTA
3114 AACCCTA
1 AACCCTA
3121 AACCCTA
1 AACCCTA
3128 AACCCTA
1 AACCCTA
3135 AACCCTA
1 AACCCTA
3142 AACCCTA
1 AACCCTA
3149 AACCCTA
1 AACCCTA
3156 AACCCTA
1 AACCCTA
3163 AACCCTA
1 AACCCTA
3170 AACCCTA
1 AACCCTA
3177 AACCCTA
1 AACCCTA
3184 AACCCTA
1 AACCCTA
3191 AACCCTA
1 AACCCTA
3198 AACCCTA
1 AACCCTA
3205 AACCCTA
1 AACCCTA
3212 AACCCTA
1 AACCCTA
3219 AACCCTA
1 AACCCTA
3226 AACCCTA
1 AACCCTA
3233 AACCCTA
1 AACCCTA
3240 AACCCTA
1 AACCCTA
3247 AACCCTA
1 AACCCTA
3254 AACCCTA
1 AACCCTA
3261 AACCCTA
1 AACCCTA
3268 AACCCTA
1 AACCCTA
3275 AACCCTA
1 AACCCTA
3282 AACCCTA
1 AACCCTA
3289 AACCCTA
1 AACCCTA
3296 AACCCTA
1 AACCCTA
3303 AACCCTA
1 AACCCTA
3310 AACCCTA
1 AACCCTA
3317 AACCCTA
1 AACCCTA
3324 AACCCTA
1 AACCCTA
3331 AACCCTA
1 AACCCTA
3338 AACCCTA
1 AACCCTA
3345 AACCCTA
1 AACCCTA
3352 AACCCTA
1 AACCCTA
3359 AACCCTA
1 AACCCTA
3366 AACCCTA
1 AACCCTA
3373 AACCCTA
1 AACCCTA
3380 AACCCTA
1 AACCCTA
3387 AACCCTA
1 AACCCTA
3394 AACCCTA
1 AACCCTA
3401 AACCCTA
1 AACCCTA
3408 AACCCTA
1 AACCCTA
3415 AACCCTA
1 AACCCTA
3422 AACCCTA
1 AACCCTA
3429 AACCCTA
1 AACCCTA
3436 AACCCTA
1 AACCCTA
3443 AACCCTA
1 AACCCTA
3450 AACCCTA
1 AACCCTA
3457 AACCCTA
1 AACCCTA
3464 AACCCTA
1 AACCCTA
3471 AACCCTA
1 AACCCTA
3478 AACCCTA
1 AACCCTA
3485 AACCCTA
1 AACCCTA
3492 AACCCTA
1 AACCCTA
3499 AACCCTA
1 AACCCTA
3506 AACCCTA
1 AACCCTA
3513 AACCCTA
1 AACCCTA
3520 AACCCTA
1 AACCCTA
3527 AACCCTA
1 AACCCTA
3534 AACCCTA
1 AACCCTA
3541 AACCCTA
1 AACCCTA
3548 AACCCTA
1 AACCCTA
3555 AACCCTA
1 AACCCTA
3562 AACCCTA
1 AACCCTA
3569 AACCCTA
1 AACCCTA
3576 AACCCTA
1 AACCCTA
3583 AACCCTA
1 AACCCTA
3590 AACCCTA
1 AACCCTA
3597 AACCCTA
1 AACCCTA
3604 AACCCTA
1 AACCCTA
3611 AACCCTA
1 AACCCTA
3618 AACCCTA
1 AACCCTA
3625 AACCCTA
1 AACCCTA
3632 AACCCTA
1 AACCCTA
3639 AACCCTA
1 AACCCTA
3646 AACCCTA
1 AACCCTA
3653 AACCCTA
1 AACCCTA
3660 AACCCTA
1 AACCCTA
3667 AACCCTA
1 AACCCTA
3674 AACCCTA
1 AACCCTA
3681 AACCCTA
1 AACCCTA
3688 AACCCTA
1 AACCCTA
3695 AACCCTA
1 AACCCTA
3702 AACCCTA
1 AACCCTA
3709 AACCCTA
1 AACCCTA
3716 AACCCTA
1 AACCCTA
3723 AACCCTA
1 AACCCTA
3730 AACCCTA
1 AACCCTA
3737 AACCCTA
1 AACCCTA
3744 AACCCTA
1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
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1 AACCCTA
7558 AACCCTA
1 AACCCTA
7565 AACCCTA
1 AACCCTA
7572 AACCCTA
1 AACCCTA
7579 AACCCTA
1 AACCCTA
7586 AACCCTA
1 AACCCTA
7593 AACCCTA
1 AACCCTA
7600 AACCCTA
1 AACCCTA
7607 AACCCTA
1 AACCCTA
7614 AACCCTA
1 AACCCTA
7621 AACCCTA
1 AACCCTA
7628 AACCCTA
1 AACCCTA
7635 AACCCTA
1 AACCCTA
7642 AACCCTA
1 AACCCTA
7649 AACCCTA
1 AACCCTA
7656 AACCCTA
1 AACCCTA
7663 AACCCTA
1 AACCCTA
7670 AACCCTA
1 AACCCTA
7677 AACCCTA
1 AACCCTA
7684 AACCCTA
1 AACCCTA
7691 AACCCTA
1 AACCCTA
7698 AACCCTA
1 AACCCTA
7705 AACCCTA
1 AACCCTA
7712 AACCCTA
1 AACCCTA
7719 AACCCTA
1 AACCCTA
7726 AACCCTA
1 AACCCTA
7733 AACCCTA
1 AACCCTA
7740 AACCCTA
1 AACCCTA
7747 AACCCTA
1 AACCCTA
7754 AACCCTA
1 AACCCTA
7761 AACCCTA
1 AACCCTA
7768 AACCCTA
1 AACCCTA
7775 AACCCTA
1 AACCCTA
7782 AACCCTA
1 AACCCTA
7789 AACCCTA
1 AACCCTA
7796 AACCCTA
1 AACCCTA
7803 AACCCTA
1 AACCCTA
7810 AACCCTA
1 AACCCTA
7817 AACCCTA
1 AACCCTA
7824 AACCCTA
1 AACCCTA
7831 AACCCTA
1 AACCCTA
7838 AACCCTA
1 AACCCTA
7845 AACCCTA
1 AACCCTA
7852 AACCCTA
1 AACCCTA
7859 AACCCTA
1 AACCCTA
7866 AACCCTA
1 AACCCTA
7873 AACCCTA
1 AACCCTA
7880 AACCCTA
1 AACCCTA
7887 AACCCTA
1 AACCCTA
7894 AACCCTA
1 AACCCTA
7901 AACCCTA
1 AACCCTA
7908 AACCCTA
1 AACCCTA
7915 AACCCTA
1 AACCCTA
7922 AACCCTA
1 AACCCTA
7929 AACCCTA
1 AACCCTA
7936 AACCCTA
1 AACCCTA
7943 AACCCTA
1 AACCCTA
7950 AACCCTA
1 AACCCTA
7957 AACCCTA
1 AACCCTA
7964 AACCCTA
1 AACCCTA
7971 AACCCTA
1 AACCCTA
7978 AACCCTA
1 AACCCTA
7985 AACCCTA
1 AACCCTA
7992 AACCCTA
1 AACCCTA
7999 AACCCTA
1 AACCCTA
8006 AACCCTA
1 AACCCTA
8013 AACCCTA
1 AACCCTA
8020 AACCCTA
1 AACCCTA
8027 AACCCTA
1 AACCCTA
8034 AACCCTA
1 AACCCTA
8041 AACCCTA
1 AACCCTA
8048 AACCCTA
1 AACCCTA
8055 AACCCTA
1 AACCCTA
8062 AACCCTA
1 AACCCTA
8069 AACCCTA
1 AACCCTA
8076 AACCCTA
1 AACCCTA
8083 AACCCTA
1 AACCCTA
8090 AACCCTA
1 AACCCTA
8097 AACCCTA
1 AACCCTA
8104 AACCCTA
1 AACCCTA
8111 AACCCTA
1 AACCCTA
8118 AACCCTA
1 AACCCTA
8125 AACCCTA
1 AACCCTA
8132 AACCCTA
1 AACCCTA
8139 AACCCTA
1 AACCCTA
8146 AACCCTA
1 AACCCTA
8153 AACCCTA
1 AACCCTA
8160 AACCCTA
1 AACCCTA
8167 AACCCTA
1 AACCCTA
8174 AACCCTA
1 AACCCTA
8181 AACCCTA
1 AACCCTA
8188 AACCCTA
1 AACCCTA
8195 AACCCTA
1 AACCCTA
8202 AACCCTA
1 AACCCTA
8209 AACCCTA
1 AACCCTA
8216 AACCCTA
1 AACCCTA
8223 AACCCTA
1 AACCCTA
8230 AACCCTA
1 AACCCTA
8237 AACCCTA
1 AACCCTA
8244 AACCCTA
1 AACCCTA
8251 AACCCTA
1 AACCCTA
8258 AACCCTA
1 AACCCTA
8265 AACCCTA
1 AACCCTA
8272 AACCCTA
1 AACCCTA
8279 AACCCTA
1 AACCCTA
8286 AACCCTA
1 AACCCTA
8293 AACCCTA
1 AACCCTA
8300 AACCCTA
1 AACCCTA
8307 AACCCTA
1 AACCCTA
8314 AACCCTA
1 AACCCTA
8321 AACCCTA
1 AACCCTA
8328 AACCCTA
1 AACCCTA
8335 AACCCTA
1 AACCCTA
8342 AACCCTA
1 AACCCTA
8349 AACCCTA
1 AACCCTA
8356 AACCCTA
1 AACCCTA
8363 AACCCTA
1 AACCCTA
8370 AACCCTA
1 AACCCTA
8377 AACCCTA
1 AACCCTA
8384 AACCCTA
1 AACCCTA
8391 AACCCTA
1 AACCCTA
8398 AACCCTA
1 AACCCTA
8405 AACCCTA
1 AACCCTA
8412 AACCCTA
1 AACCCTA
8419 AACCCTA
1 AACCCTA
8426 AACCCTA
1 AACCCTA
8433 AACCCTA
1 AACCCTA
8440 AACCCTA
1 AACCCTA
8447 AACCCTA
1 AACCCTA
8454 AACCCTA
1 AACCCTA
8461 AACCCTA
1 AACCCTA
8468 AACCCTA
1 AACCCTA
8475 AACCCTA
1 AACCCTA
8482 AACCCTA
1 AACCCTA
8489 AACCCTA
1 AACCCTA
8496 AACCCTA
1 AACCCTA
8503 AA-CCTA
1 AACCCTA
8509 AACCCTA
1 AACCCTA
8516 AACCCTA
1 AACCCTA
8523 AACCCTA
1 AACCCTA
8530 AACCCTA
1 AACCCTA
8537 AACCCTA
1 AACCCTA
8544 AACCCTA
1 AACCCTA
8551 AACCCTA
1 AACCCTA
8558 AACCCTA
1 AACCCTA
8565 AACCCTA
1 AACCCTA
8572 AACCCTA
1 AACCCTA
8579 AACCCTA
1 AACCCTA
8586 AACCCTA
1 AACCCTA
8593 AACCCTA
1 AACCCTA
8600 AACCCTA
1 AACCCTA
8607 AACCCTA
1 AACCCTA
8614 AACCCTA
1 AACCCTA
8621 AACCCTA
1 AACCCTA
8628 AACCCTA
1 AACCCTA
8635 AACCCTA
1 AACCCTA
8642 AACCCTA
1 AACCCTA
8649 AACCCTA
1 AACCCTA
8656 AACCCTA
1 AACCCTA
8663 AACCCTA
1 AACCCTA
8670 AACCCTA
1 AACCCTA
8677 AACCCTA
1 AACCCTA
8684 AACCCTA
1 AACCCTA
8691 AACCCTA
1 AACCCTA
8698 AACCCTA
1 AACCCTA
8705 AACCCTA
1 AACCCTA
8712 AACCCTA
1 AACCCTA
8719 AACCCTA
1 AACCCTA
8726 AACCCTA
1 AACCCTA
8733 AACCCTA
1 AACCCTA
8740 AACCCTA
1 AACCCTA
8747 AACCCTA
1 AACCCTA
8754 AACCCTA
1 AACCCTA
8761 AACCCTA
1 AACCCTA
8768 AACCCTA
1 AACCCTA
8775 AACCCTA
1 AACCCTA
8782 AACCCTA
1 AACCCTA
8789 AACCCTA
1 AACCCTA
8796 AACCCTA
1 AACCCTA
8803 AACCCTA
1 AACCCTA
8810 AACCCTA
1 AACCCTA
8817 AACCCTA
1 AACCCTA
8824 AACCCTA
1 AACCCTA
8831 AACCCTA
1 AACCCTA
8838 AACCCTA
1 AACCCTA
8845 AACCCTA
1 AACCCTA
8852 AACCCTA
1 AACCCTA
8859 AACCCTA
1 AACCCTA
8866 AACCCTA
1 AACCCTA
8873 AACCCTA
1 AACCCTA
8880 AACCCTA
1 AACCCTA
8887 AACCCTA
1 AACCCTA
8894 AACCCTA
1 AACCCTA
8901 AACCCTA
1 AACCCTA
8908 AACCCTA
1 AACCCTA
8915 AACCCTA
1 AACCCTA
8922 AACCCTA
1 AACCCTA
8929 AACCCTA
1 AACCCTA
8936 AACCCTA
1 AACCCTA
8943 AACCCTA
1 AACCCTA
8950 AACCCTA
1 AACCCTA
8957 AACCCTA
1 AACCCTA
8964 AACCCTA
1 AACCCTA
8971 AACCCTA
1 AACCCTA
8978 AACCCTA
1 AACCCTA
8985 AACCCTA
1 AACCCTA
8992 AACCCTA
1 AACCCTA
8999 AACCCTA
1 AACCCTA
9006 AACCCTA
1 AACCCTA
9013 AACCCTA
1 AACCCTA
9020 AACCCTA
1 AACCCTA
9027 AACCCTA
1 AACCCTA
9034 AACCCTA
1 AACCCTA
9041 AACCCTA
1 AACCCTA
9048 AACCCTA
1 AACCCTA
9055 AACCCTA
1 AACCCTA
9062 AACCCTA
1 AACCCTA
9069 AACCCTA
1 AACCCTA
9076 AACCCTA
1 AACCCTA
9083 AACCCTA
1 AACCCTA
9090 AACCCTA
1 AACCCTA
9097 AACCCTA
1 AACCCTA
9104 AACCCTA
1 AACCCTA
9111 AACCCTA
1 AACCCTA
9118 AACCCTA
1 AACCCTA
9125 AACCCTA
1 AACCCTA
9132 AACCCTA
1 AACCCTA
9139 AACCCTA
1 AACCCTA
9146 AACCCTA
1 AACCCTA
9153 AACCCTA
1 AACCCTA
9160 AACCCTA
1 AACCCTA
9167 AACCCTA
1 AACCCTA
9174 AACCCTA
1 AACCCTA
9181 AACCCTA
1 AACCCTA
9188 AACCCTA
1 AACCCTA
9195 AACCCTA
1 AACCCTA
9202 AACCCTA
1 AACCCTA
9209 AACCCTA
1 AACCCTA
9216 AACCCTA
1 AACCCTA
9223 AACCCTA
1 AACCCTA
9230 AACCCTA
1 AACCCTA
9237 AACCCTA
1 AACCCTA
9244 AACCCTA
1 AACCCTA
9251 AACCCTA
1 AACCCTA
9258 AACCCTA
1 AACCCTA
9265 AACCCTA
1 AACCCTA
9272 AACCCTA
1 AACCCTA
9279 AACCCTA
1 AACCCTA
9286 AACCCTA
1 AACCCTA
9293 AACCCTA
1 AACCCTA
9300 AACCCTA
1 AACCCTA
9307 AACCCTA
1 AACCCTA
9314 AACCCTA
1 AACCCTA
9321 AACCCTA
1 AACCCTA
9328 AACCCTA
1 AACCCTA
9335 AACCCTA
1 AACCCTA
9342 AACCCTA
1 AACCCTA
9349 AACCCTA
1 AACCCTA
9356 AACCCTA
1 AACCCTA
9363 AACCCTA
1 AACCCTA
9370 AACCCTA
1 AACCCTA
9377 AACCCTA
1 AACCCTA
9384 AACCCTA
1 AACCCTA
9391 AACCCTA
1 AACCCTA
9398 AACCCTA
1 AACCCTA
9405 AACCCTA
1 AACCCTA
9412 AACCCTA
1 AACCCTA
9419 AACCCTA
1 AACCCTA
9426 AACCCTA
1 AACCCTA
9433 AACCCTA
1 AACCCTA
9440 AACCCTA
1 AACCCTA
9447 AACCCTA
1 AACCCTA
9454 AACCCTA
1 AACCCTA
9461 AACCCTA
1 AACCCTA
9468 AACCCTA
1 AACCCTA
9475 AACCCTA
1 AACCCTA
9482 AACCCTA
1 AACCCTA
9489 AACCCTA
1 AACCCTA
9496 AACCCTA
1 AACCCTA
9503 AACCCTA
1 AACCCTA
9510 AACCCTA
1 AACCCTA
9517 AACCCTA
1 AACCCTA
9524 AACCCTA
1 AACCCTA
9531 AACCCTA
1 AACCCTA
9538 AACCCTA
1 AACCCTA
9545 AACCCTA
1 AACCCTA
9552 AACCCTA
1 AACCCTA
9559 AACCCTA
1 AACCCTA
9566 AACCCTA
1 AACCCTA
9573 AACCCTA
1 AACCCTA
9580 AACCCTA
1 AACCCTA
9587 AACCCTA
1 AACCCTA
9594 AACCCTA
1 AACCCTA
9601 AACCCTA
1 AACCCTA
9608 AACCCTA
1 AACCCTA
9615 AACCCTA
1 AACCCTA
9622 AACCCTA
1 AACCCTA
9629 AACCCTA
1 AACCCTA
9636 AACCCTA
1 AACCCTA
9643 AACCCTA
1 AACCCTA
9650 AACCCTA
1 AACCCTA
9657 AACCCTA
1 AACCCTA
9664 AACCCTA
1 AACCCTA
9671 AACCCTA
1 AACCCTA
9678 AACCCTA
1 AACCCTA
9685 AACCCTA
1 AACCCTA
9692 AACCCTA
1 AACCCTA
9699 AACCCTA
1 AACCCTA
9706 AACCCTA
1 AACCCTA
9713 AACCCTA
1 AACCCTA
9720 AACCCTA
1 AACCCTA
9727 AACCCTA
1 AACCCTA
9734 AACCCTA
1 AACCCTA
9741 AACCCTA
1 AACCCTA
9748 AACCCTA
1 AACCCTA
9755 AACCCTA
1 AACCCTA
9762 AACCCTA
1 AACCCTA
9769 AACCCTA
1 AACCCTA
9776 AACCCTA
1 AACCCTA
9783 AACCCTA
1 AACCCTA
9790 AACCCTA
1 AACCCTA
9797 AACCCTAA
1 AACCCT-A
9805 AACCCTA
1 AACCCTA
9812 AACCCTA
1 AACCCTA
9819 AACCCTA
1 AACCCTA
9826 AACCCTA
1 AACCCTA
9833 AACCCTA
1 AACCCTA
9840 AACCCTA
1 AACCCTA
9847 AACCCTA
1 AACCCTA
9854 AACCCTA
1 AACCCTA
9861 AACCCTA
1 AACCCTA
9868 AACCCTA
1 AACCCTA
9875 AACCCTA
1 AACCCTA
9882 AACCCTA
1 AACCCTA
9889 AACCCTA
1 AACCCTA
9896 AACCCTA
1 AACCCTA
9903 AACCCTA
1 AACCCTA
9910 AACCCTA
1 AACCCTA
9917 AACCCTA
1 AACCCTA
9924 AACCCTA
1 AACCCTA
9931 AACCCTA
1 AACCCTA
9938 AACCCTA
1 AACCCTA
9945 AACCCTA
1 AACCCTA
9952 AACCCTA
1 AACCCTA
9959 AACCCTA
1 AACCCTA
9966 AACCCTA
1 AACCCTA
9973 AACCCTA
1 AACCCTA
9980 AACCCTA
1 AACCCTA
9987 AACCCTA
1 AACCCTA
9994 AACCCTA
1 AACCCTA
10001 AACCCTA
1 AACCCTA
10008 AACCCTA
1 AACCCTA
10015 AACCCTA
1 AACCCTA
10022 AACCCTA
1 AACCCTA
10029 AACCCTA
1 AACCCTA
10036 AACCCTA
1 AACCCTA
10043 AACCCTA
1 AACCCTA
10050 AACCCTA
1 AACCCTA
10057 AACCCTA
1 AACCCTA
10064 AACCCTA
1 AACCCTA
10071 AACCCTA
1 AACCCTA
10078 AACCCTA
1 AACCCTA
10085 AACCCTA
1 AACCCTA
10092 AACCCTA
1 AACCCTA
10099 AACCCTA
1 AACCCTA
10106 AACCCTA
1 AACCCTA
10113 AACCCTA
1 AACCCTA
10120 AACCCTA
1 AACCCTA
10127 AACCCTA
1 AACCCTA
10134 AACCCTA
1 AACCCTA
10141 AACCCTA
1 AACCCTA
10148 AACCCTA
1 AACCCTA
10155 AACCCTA
1 AACCCTA
10162 AACCCTA
1 AACCCTA
10169 AACCCTA
1 AACCCTA
10176 AACCCTA
1 AACCCTA
10183 AACCCTA
1 AACCCTA
10190 AACCCTA
1 AACCCTA
10197 AACCCTA
1 AACCCTA
10204 AACCCTA
1 AACCCTA
10211 AACCCTA
1 AACCCTA
10218 AACCCTA
1 AACCCTA
10225 AACCCTA
1 AACCCTA
10232 AACCCTA
1 AACCCTA
10239 AACCCTA
1 AACCCTA
10246 AACCCTA
1 AACCCTA
10253 AACCCTA
1 AACCCTA
10260 AACCCTA
1 AACCCTA
10267 AACCCTA
1 AACCCTA
10274 AACCCTA
1 AACCCTA
10281 AACCCTA
1 AACCCTA
10288 AACCCTA
1 AACCCTA
10295 AACCCTA
1 AACCCTA
10302 AACCCTA
1 AACCCTA
10309 AACCCTA
1 AACCCTA
10316 AACCCTA
1 AACCCTA
10323 AACCCTA
1 AACCCTA
10330 AACCCTA
1 AACCCTA
10337 AACCCTA
1 AACCCTA
10344 AACCCTA
1 AACCCTA
10351 AACCCTA
1 AACCCTA
10358 AACCCTA
1 AACCCTA
10365 AACCCTA
1 AACCCTA
10372 AACCCTA
1 AACCCTA
10379 AACCCTA
1 AACCCTA
10386 AACCCTA
1 AACCCTA
10393 AACCCTA
1 AACCCTA
10400 AACCCTA
1 AACCCTA
10407 AACCCTA
1 AACCCTA
10414 AACCCTA
1 AACCCTA
10421 AACCCTA
1 AACCCTA
10428 AACCCTA
1 AACCCTA
10435 AACCCTA
1 AACCCTA
10442 AACCCTA
1 AACCCTA
10449 AACCCTA
1 AACCCTA
10456 AACCCTA
1 AACCCTA
10463 AACCCTA
1 AACCCTA
10470 AACCCTA
1 AACCCTA
10477 AACCCTA
1 AACCCTA
10484 AACCCTA
1 AACCCTA
10491 AACCCTA
1 AACCCTA
10498 AACCCTA
1 AACCCTA
10505 AACCCTA
1 AACCCTA
10512 AACCCTA
1 AACCCTA
10519 AACCC-A
1 AACCCTA
10525 AACCCTA
1 AACCCTA
10532 AACCCTA
1 AACCCTA
10539 AACCCTA
1 AACCCTA
10546 AACCCTA
1 AACCCTA
10553 AACCCTA
1 AACCCTA
10560 AACCCTA
1 AACCCTA
10567 AACCCTA
1 AACCCTA
10574 AACCCTA
1 AACCCTA
10581 AACCCTA
1 AACCCTA
10588 AACCCTA
1 AACCCTA
10595 AACCCTA
1 AACCCTA
10602 AACCCTA
1 AACCCTA
10609 AACCCTA
1 AACCCTA
10616 AACCCTA
1 AACCCTA
10623 AACCCTA
1 AACCCTA
10630 AACCCTA
1 AACCCTA
10637 AACCCTA
1 AACCCTA
10644 AACCCTA
1 AACCCTA
10651 AACCC-A
1 AACCCTA
10657 AACCCTA
1 AACCCTA
*
10664 AACCCCA
1 AACCCTA
10671 AACCC-A
1 AACCCTA
10677 AACCC-A
1 AACCCTA
10683 AACCC--
1 AACCCTA
*
10688 AACCCCA
1 AACCCTA
10695 AACCC-A
1 AACCCTA
10701 AACCCTA
1 AACCCTA
10708 AACCC-A
1 AACCCTA
10714 AACCC-A
1 AACCCTA
10720 AACCC-A
1 AACCCTA
10726 AACCCTA
1 AACCCTA
10733 AACCCTA
1 AACCCTA
10740 AACCCTA
1 AACCCTA
10747 AACCCTA
1 AACCCTA
10754 AACCCTA
1 AACCCTA
10761 AACCCTA
1 AACCCTA
10768 AACCCTA
1 AACCCTA
10775 AACCCTA
1 AACCCTA
10782 AACCCTA
1 AACCCTA
10789 AACCCTA
1 AACCCTA
10796 AACCCTA
1 AACCCTA
10803 AACCC-A
1 AACCCTA
10809 AACCC--
1 AACCCTA
*
10814 AACCCCA
1 AACCCTA
10821 AACCCTA
1 AACCCTA
10828 AACCCTA
1 AACCCTA
10835 AA-CCTA
1 AACCCTA
10841 AACCCTA
1 AACCCTA
10848 AACCCTA
1 AACCCTA
10855 AACCCTA
1 AACCCTA
* *
10862 AAACCTG
1 AACCCTA
10869 AACCCTA
1 AACCCTA
10876 AACCCTA
1 AACCCTA
*
10883 AAACCTA
1 AACCCTA
10890 AACCCTA
1 AACCCTA
10897 AACC
1 AACC
10901 AAAAATCGAA
Statistics
Matches: 10787, Mismatches: 42, Indels: 128
0.98 0.00 0.01
Matches are distributed among these distances:
4 11 0.00
5 24 0.00
6 110 0.01
7 10561 0.98
8 39 0.00
9 21 0.00
10 18 0.00
11 3 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:10924 original size:22 final size:22
Alignment explanation
Indices: 10901--10980 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
10891 ACCCTAAACC
* *
10901 AAAAATCGAACCGATTTGCCCCAA
1 AAAAACCGAACCGAATT-CCCC-A
**
10925 AAAAACCGAACCGGGTT-CCCA
1 AAAAACCGAACCGAATTCCCCA
10946 AAAAACCGAACCGAATTCCCCA
1 AAAAACCGAACCGAATTCCCCA
*
10968 AAAAATCGAACCG
1 AAAAACCGAACCG
10981 GTACCTTAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
21 16 0.33
22 19 0.39
24 14 0.29
ACGTcount: A:0.44, C:0.31, G:0.14, T:0.11
Consensus pattern (22 bp):
AAAAACCGAACCGAATTCCCCA
Found at i:10949 original size:23 final size:22
Alignment explanation
Indices: 10924--11068 Score: 154
Period size: 21 Copynumber: 6.7 Consensus size: 22
10914 ATTTGCCCCA
10924 AAAAAACCGAACCGGGTTCCC-
1 AAAAAACCGAACCGGGTTCCCT
** *
10945 AAAAAACCGAACCGAATTCCCC
1 AAAAAACCGAACCGGGTTCCCT
* * *
10967 AAAAAATCGAACC-GGTACCTT
1 AAAAAACCGAACCGGGTTCCCT
*
10988 AAAAAACCGAACCGGGGTCCCTT
1 AAAAAACCGAACCGGGTTCCC-T
* *
11011 AAAAAACCAAACCGGGGTCCCT
1 AAAAAACCGAACCGGGTTCCCT
* *
11033 TAAAAACCGAACCGGGTT-TC-
1 AAAAAACCGAACCGGGTTCCCT
11053 AAAAAACCGAACCGGG
1 AAAAAACCGAACCGGG
11069 GTTAATAAAC
Statistics
Matches: 103, Mismatches: 18, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
20 15 0.15
21 35 0.34
22 32 0.31
23 21 0.20
ACGTcount: A:0.41, C:0.30, G:0.18, T:0.12
Consensus pattern (22 bp):
AAAAAACCGAACCGGGTTCCCT
Found at i:10950 original size:21 final size:21
Alignment explanation
Indices: 10924--11068 Score: 141
Period size: 22 Copynumber: 6.8 Consensus size: 21
10914 ATTTGCCCCA
10924 AAAAAACCGAACCGGGTTCCC
1 AAAAAACCGAACCGGGTTCCC
**
10945 AAAAAACCGAACCGAATTCCCC
1 AAAAAACCGAACCGGGTT-CCC
* * *
10967 AAAAAATCGAACC-GGTACCTT
1 AAAAAACCGAACCGGGTTCC-C
*
10988 AAAAAACCGAACCGGGGTCCC
1 AAAAAACCGAACCGGGTTCCC
* *
11009 TTAAAAAACCAAACCGGGGTCCC
1 --AAAAAACCGAACCGGGTTCCC
* *
11032 TTAAAAACCGAACCGGGTT-TC
1 -AAAAAACCGAACCGGGTTCCC
11053 AAAAAACCGAACCGGG
1 AAAAAACCGAACCGGG
11069 GTTAATAAAC
Statistics
Matches: 102, Mismatches: 17, Indels: 11
0.78 0.13 0.08
Matches are distributed among these distances:
20 17 0.17
21 30 0.29
22 35 0.34
23 20 0.20
ACGTcount: A:0.41, C:0.30, G:0.18, T:0.12
Consensus pattern (21 bp):
AAAAAACCGAACCGGGTTCCC
Found at i:10992 original size:43 final size:45
Alignment explanation
Indices: 10901--11001 Score: 127
Period size: 43 Copynumber: 2.3 Consensus size: 45
10891 ACCCTAAACC
* * *
10901 AAAAATCGAACCGATTTGCCCCAAAAAAACCGAACCGGGTTCCCA
1 AAAAACCGAACCGAATTGCCCCAAAAAAACCGAACCGGGTACCCA
* *
10946 AAAAACCGAACCGAATT-CCCC-AAAAAATCGAACC-GGTACCTTA
1 AAAAACCGAACCGAATTGCCCCAAAAAAACCGAACCGGGTACC-CA
10989 AAAAACCGAACCG
1 AAAAACCGAACCG
11002 GGGTCCCTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
42 5 0.10
43 26 0.52
44 4 0.08
45 15 0.30
ACGTcount: A:0.44, C:0.31, G:0.14, T:0.12
Consensus pattern (45 bp):
AAAAACCGAACCGAATTGCCCCAAAAAAACCGAACCGGGTACCCA
Found at i:11083 original size:20 final size:20
Alignment explanation
Indices: 10988--11071 Score: 78
Period size: 20 Copynumber: 4.0 Consensus size: 20
10978 CCGGTACCTT
*
10988 AAAAAACCGAACCGGGGTCCCTT
1 AAAAAACCGAACCGGGGT---TC
* *
11011 AAAAAACCAAACCGGGGTCCC
1 AAAAAACCGAACCGGGGT-TC
* *
11032 TTAAAAACCGAACCGGGTTTC
1 -AAAAAACCGAACCGGGGTTC
11053 AAAAAACCGAACCGGGGTT
1 AAAAAACCGAACCGGGGTT
11072 AATAAACCCG
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
20 17 0.33
21 2 0.04
22 15 0.29
23 17 0.33
ACGTcount: A:0.38, C:0.27, G:0.21, T:0.13
Consensus pattern (20 bp):
AAAAAACCGAACCGGGGTTC
Found at i:19815 original size:31 final size:31
Alignment explanation
Indices: 19777--19842 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
19767 TAGAAAGAAA
* *
19777 GAAACTTGTATAGGTGCTCTCCTCTACTGAT
1 GAAACTTGCATAGGTGCTCTCCTCTACTAAT
19808 GAAACTTGCATAGGTGCTCTCCTCTACTAAT
1 GAAACTTGCATAGGTGCTCTCCTCTACTAAT
19839 GAAA
1 GAAA
19843 GTTGGAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (31 bp):
GAAACTTGCATAGGTGCTCTCCTCTACTAAT
Found at i:28224 original size:39 final size:39
Alignment explanation
Indices: 28160--28240 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
28150 GGTGGTGACG
*
28160 GGTGGACCGATGGTGACTACCTGACTGGTGAACGATGAT
1 GGTGGACCGATGGTGACTACCTGACTGGTGAACGACGAT
* * *
28199 GGTGTACCGGTGGTGACTGCCTGACTGGTGAACGACGAT
1 GGTGGACCGATGGTGACTACCTGACTGGTGAACGACGAT
28238 GGT
1 GGT
28241 TGTGGCCGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.20, C:0.19, G:0.38, T:0.23
Consensus pattern (39 bp):
GGTGGACCGATGGTGACTACCTGACTGGTGAACGACGAT
Found at i:31950 original size:16 final size:16
Alignment explanation
Indices: 31906--31959 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
31896 TCCACAGGTT
* *
31906 GGGATGTACCTCAGCC
1 GGGATATACCTAAGCC
* *
31922 GGGCTAT-CCTAAGTC
1 GGGATATACCTAAGCC
31937 GGGATATACCTAAGCC
1 GGGATATACCTAAGCC
31953 GGGATAT
1 GGGATAT
31960 CCTCAGAATG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
15 12 0.39
16 19 0.61
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (16 bp):
GGGATATACCTAAGCC
Found at i:32173 original size:42 final size:43
Alignment explanation
Indices: 32079--32173 Score: 131
Period size: 42 Copynumber: 2.3 Consensus size: 43
32069 CCAACCGGGA
* * * *
32079 TGGGATATCAGAGGGATATTCCCGGAATTGATTATTCTAAGAG
1 TGGGATATGAGAGGGATATCCCCGGAATAGATTATTCCAAGAG
*
32122 -GGGAAATGAGAGGGATATCCCCGGAATAGATTATTCCAA-AG
1 TGGGATATGAGAGGGATATCCCCGGAATAGATTATTCCAAGAG
32163 TGGGATATGAG
1 TGGGATATGAG
32174 CTGTATTTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.04
42 43 0.96
ACGTcount: A:0.33, C:0.12, G:0.31, T:0.25
Consensus pattern (43 bp):
TGGGATATGAGAGGGATATCCCCGGAATAGATTATTCCAAGAG
Found at i:37094 original size:29 final size:31
Alignment explanation
Indices: 37055--37116 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
37045 AGTACGAGAA
37055 GGGAGGAA-AGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
37085 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
1 GGGAGGAAGAGAGAATAATGAAAACAAAAAG
37116 G
1 G
37117 AAATAAGGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 8 0.26
31 23 0.74
ACGTcount: A:0.58, C:0.03, G:0.32, T:0.06
Consensus pattern (31 bp):
GGGAGGAAGAGAGAATAATGAAAACAAAAAG
Found at i:39384 original size:39 final size:39
Alignment explanation
Indices: 39330--39412 Score: 130
Period size: 39 Copynumber: 2.1 Consensus size: 39
39320 GGTGGTTACG
*
39330 GGTGGACCAATGGTGACTACCTGACTGGTGAACGATGAT
1 GGTGGACCAATGGTGACTACCTGACTGGTGAACGACGAT
** *
39369 GGTGGACCGGTGGTGACTGCCTGACTGGTGAACGACGAT
1 GGTGGACCAATGGTGACTACCTGACTGGTGAACGACGAT
39408 GGTGG
1 GGTGG
39413 TGGCCAGTGG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.20, C:0.18, G:0.40, T:0.22
Consensus pattern (39 bp):
GGTGGACCAATGGTGACTACCTGACTGGTGAACGACGAT
Found at i:40654 original size:35 final size:35
Alignment explanation
Indices: 40615--40686 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
40605 TAGAGAAGAA
40615 AGCTAATTATGTACCAAAAAAGAGGGAGAAACTCT
1 AGCTAATTATGTACCAAAAAAGAGGGAGAAACTCT
40650 AGCTAATTATGTACCAAAAAAGAGGGAGAAACTCT
1 AGCTAATTATGTACCAAAAAAGAGGGAGAAACTCT
40685 AG
1 AG
40687 GTAAAGAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (35 bp):
AGCTAATTATGTACCAAAAAAGAGGGAGAAACTCT
Found at i:42522 original size:16 final size:16
Alignment explanation
Indices: 42501--42532 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
42491 TAATATTCAA
42501 CTGAAACTATTCTCTT
1 CTGAAACTATTCTCTT
42517 CTGAAACTATTCTCTT
1 CTGAAACTATTCTCTT
42533 TCTTCCACGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
CTGAAACTATTCTCTT
Found at i:45898 original size:21 final size:21
Alignment explanation
Indices: 45868--45924 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
45858 AAATAGGTTG
45868 AAAATA-TGAACCGGACACCA
1 AAAATACTGAACCGGACACCA
* *
45888 AAACA-ACTGAACCGTACACTA
1 AAA-ATACTGAACCGGACACCA
45909 AAAATACTGAACCGGA
1 AAAATACTGAACCGGA
45925 ACGGAATATG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 5 0.16
21 26 0.84
ACGTcount: A:0.49, C:0.25, G:0.14, T:0.12
Consensus pattern (21 bp):
AAAATACTGAACCGGACACCA
Found at i:51824 original size:11 final size:10
Alignment explanation
Indices: 51798--51868 Score: 56
Period size: 11 Copynumber: 6.9 Consensus size: 10
51788 TATTTTTTAA
51798 TATTATTTTT
1 TATTATTTTT
*
51808 TGTTATTTTCT
1 TATTATTTT-T
*
51819 TCTTATTTTGT
1 TATTATTTT-T
51830 TATTA--TTT
1 TATTATTTTT
*
51838 TATTATTATAT
1 TATTATT-TTT
*
51849 TATTATATTGT
1 TATTAT-TTTT
51860 TATTATTTT
1 TATTATTTT
51869 ATTGTTATTG
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
8 6 0.12
9 2 0.04
10 10 0.20
11 30 0.61
12 1 0.02
ACGTcount: A:0.21, C:0.03, G:0.04, T:0.72
Consensus pattern (10 bp):
TATTATTTTT
Found at i:51843 original size:19 final size:20
Alignment explanation
Indices: 51800--51868 Score: 63
Period size: 19 Copynumber: 3.5 Consensus size: 20
51790 TTTTTTAATA
51800 TTATT-TTTTGTTATT-TTC
1 TTATTATTTTGTTATTATTC
*
51818 TTCTTATTTTGTTATTATT-
1 TTATTATTTTGTTATTATTC
* * *
51837 TTATTATTATATTATTATATTG
1 TTATTATTTTGTTA-T-TATTC
51859 TTATTATTTT
1 TTATTATTTT
51869 ATTGTTATTG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
18 4 0.10
19 21 0.51
20 3 0.07
21 4 0.10
22 9 0.22
ACGTcount: A:0.20, C:0.03, G:0.04, T:0.72
Consensus pattern (20 bp):
TTATTATTTTGTTATTATTC
Found at i:63572 original size:19 final size:18
Alignment explanation
Indices: 63550--63584 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
63540 ATTCAAAGAT
63550 TTTTTAATAGATGTGAAA
1 TTTTTAATAGATGTGAAA
*
63568 TTTTTAGTAGATGTGAA
1 TTTTTAATAGATGTGAA
63585 TAAGATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (18 bp):
TTTTTAATAGATGTGAAA
Found at i:65286 original size:33 final size:33
Alignment explanation
Indices: 65249--65350 Score: 106
Period size: 33 Copynumber: 3.2 Consensus size: 33
65239 TATAAACTGT
65249 AGATTAAAGAATATCAATCTCATTTAACACTCA
1 AGATTAAAGAATATCAATCTCATTTAACACTCA
* * * * **
65282 AGATT-AA-ACT-TAAAT-TTATATAA-ACTGT
1 AGATTAAAGAATATCAATCTCATTTAACACTCA
*
65310 AGATTAAAGAATATCAACCTCATTTAACACTCA
1 AGATTAAAGAATATCAATCTCATTTAACACTCA
65343 AGATTAAA
1 AGATTAAA
65351 CTTACCAGTA
Statistics
Matches: 51, Mismatches: 13, Indels: 10
0.69 0.18 0.14
Matches are distributed among these distances:
28 8 0.16
29 8 0.16
30 6 0.12
31 5 0.10
32 8 0.16
33 16 0.31
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (33 bp):
AGATTAAAGAATATCAATCTCATTTAACACTCA
Found at i:65324 original size:61 final size:61
Alignment explanation
Indices: 65229--65354 Score: 243
Period size: 61 Copynumber: 2.1 Consensus size: 61
65219 ATTCCCTAAC
*
65229 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAATCTCATTTAACACTCAAGATTAAA
1 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
65290 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
1 CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
65351 CTTA
1 CTTA
65355 CCAGTAACTT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.34
Consensus pattern (61 bp):
CTTAAATTTATATAAACTGTAGATTAAAGAATATCAACCTCATTTAACACTCAAGATTAAA
Found at i:77853 original size:1 final size:1
Alignment explanation
Indices: 77849--77873 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
77839 TTTTTAGTTG
77849 TTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTT
77874 GGTGGGGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:80780 original size:14 final size:15
Alignment explanation
Indices: 80752--80784 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
80742 CATAAATCAA
80752 AAATTTAAAATTTTG
1 AAATTTAAAATTTTG
*
80767 AAATTTGAAA-TTTG
1 AAATTTAAAATTTTG
80781 AAAT
1 AAAT
80785 CCAAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (15 bp):
AAATTTAAAATTTTG
Found at i:84394 original size:15 final size:16
Alignment explanation
Indices: 84374--84410 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
84364 ACACTCAGGC
84374 TTATTTT-TATTTATA-
1 TTATTTTATATTT-TAG
84389 TTATTTTATATTTTAG
1 TTATTTTATATTTTAG
84405 TTATTT
1 TTATTT
84411 ATGTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (16 bp):
TTATTTTATATTTTAG
Found at i:84411 original size:15 final size:15
Alignment explanation
Indices: 84374--84444 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
84364 ACACTCAGGC
*
84374 TTATTTTTA-TTTATA
1 TTATTTATATTTTA-A
*
84389 TTATTTTATATTTTAG
1 TTA-TTTATATTTTAA
* *
84405 TTATTTATGTTTAAA
1 TTATTTATATTTTAA
*
84420 ATA-TTATATTTTAA
1 TTATTTATATTTTAA
*
84434 TTACTTATATT
1 TTATTTATATT
84445 ATTATATTGT
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
14 11 0.25
15 21 0.48
16 8 0.18
17 4 0.09
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (15 bp):
TTATTTATATTTTAA
Found at i:84688 original size:20 final size:20
Alignment explanation
Indices: 84642--84688 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
84632 TTATTTTCCA
*
84642 TTCTCTTCTATTTCTCTCAT
1 TTCTTTTCTATTTCTCTCAT
84662 TAT-TTTTCTATCTTCTCT-AT
1 T-TCTTTTCTAT-TTCTCTCAT
84682 TTCTTTT
1 TTCTTTT
84689 AATATATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 1 0.04
20 15 0.65
21 7 0.30
ACGTcount: A:0.11, C:0.23, G:0.00, T:0.66
Consensus pattern (20 bp):
TTCTTTTCTATTTCTCTCAT
Found at i:85792 original size:19 final size:19
Alignment explanation
Indices: 85751--85793 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
85741 ATGTTTTTTA
***
85751 CCAATAACAAAACAATGGT
1 CCAATAACAAAACAATAAC
*
85770 CCAATACCAAAACAATAAC
1 CCAATAACAAAACAATAAC
85789 CCAAT
1 CCAAT
85794 TACTCATTAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.28, G:0.05, T:0.14
Consensus pattern (19 bp):
CCAATAACAAAACAATAAC
Found at i:87359 original size:29 final size:29
Alignment explanation
Indices: 87326--87384 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
87316 AATGCCAAAT
87326 GACTCTTCTTTTAGCCTCTAGTCAGTATA
1 GACTCTTCTTTTAGCCTCTAGTCAGTATA
87355 GACTCTTCTTTTAGCCTCTAGTCAGTATA
1 GACTCTTCTTTTAGCCTCTAGTCAGTATA
87384 G
1 G
87385 CTGCAAGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (29 bp):
GACTCTTCTTTTAGCCTCTAGTCAGTATA
Found at i:91805 original size:22 final size:21
Alignment explanation
Indices: 91762--91805 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
91752 ATAATTTCTA
*
91762 TTCTTTTTTTTCCCTTCCTAT
1 TTCTTTTTTTTCCCTTCATAT
* *
91783 TTCTTTTTATTTCCTTTTATAT
1 TTCTTTTT-TTTCCCTTCATAT
91805 T
1 T
91806 ACTAGAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.70
Consensus pattern (21 bp):
TTCTTTTTTTTCCCTTCATAT
Found at i:92752 original size:6 final size:6
Alignment explanation
Indices: 92685--92743 Score: 93
Period size: 6 Copynumber: 9.8 Consensus size: 6
92675 AAAAATTATA
*
92685 TTTTTC TTTTTTC TTTTTC TTTTAC TTTTTC TTTTTC TTTTTC TTTTTC
1 TTTTTC -TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
92734 -TTTTC TTTTT
1 TTTTTC TTTTT
92744 TTTCTTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
5 5 0.10
6 38 0.78
7 6 0.12
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:104193 original size:46 final size:46
Alignment explanation
Indices: 104126--104341 Score: 315
Period size: 46 Copynumber: 4.7 Consensus size: 46
104116 GGCAACCTGA
104126 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*
104172 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* *
104218 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
*** * * *
104264 GAACAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
* * * *
104310 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
104342 TCATGTCAAA
Statistics
Matches: 156, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 156 1.00
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATAAAAT
Found at i:104321 original size:138 final size:130
Alignment explanation
Indices: 104076--104341 Score: 379
Period size: 138 Copynumber: 2.0 Consensus size: 130
104066 AGTGTGCTCT
*
104076 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
* * * * * *
104141 TGAAAGATACCATGGCAACCTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
*
104206 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG--A-G---TG--CAAG
*
104271 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACT
58 ACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACC
104336 ATGGCA
123 ATGGCA
104342 TCATGTCAAA
Statistics
Matches: 119, Mismatches: 9, Indels: 8
0.88 0.07 0.06
Matches are distributed among these distances:
130 48 0.40
132 1 0.01
133 1 0.01
136 2 0.02
138 67 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAGTGCAAGACCATGGT
TGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:106186 original size:29 final size:30
Alignment explanation
Indices: 106139--106206 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
106129 TGGCCCAAGA
* *
106139 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
106169 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
106199 GCAAATAT
1 GTAAATAT
106207 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:108710 original size:46 final size:46
Alignment explanation
Indices: 108604--108875 Score: 424
Period size: 46 Copynumber: 6.0 Consensus size: 46
108594 AGTGTGCTCT
* *
108604 CTGAAATGAAATGTGTAAGA-CATGGTTGAAAGATACCAT-GCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
108648 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
108694 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
108740 CTGATATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
108786 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
108832 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
108876 TCATGTCAAA
Statistics
Matches: 213, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
44 19 0.09
45 19 0.09
46 175 0.82
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:109672 original size:16 final size:15
Alignment explanation
Indices: 109643--109680 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
109633 GTTTAGTCTC
109643 TAAGGTTTTTTGGTT
1 TAAGGTTTTTTGGTT
*
109658 TATGGTTTTTATGGTT
1 TAAGGTTTTT-TGGTT
109674 TAAGGTT
1 TAAGGTT
109681 AGTGTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.16, C:0.00, G:0.26, T:0.58
Consensus pattern (15 bp):
TAAGGTTTTTTGGTT
Found at i:109822 original size:35 final size:34
Alignment explanation
Indices: 109781--109892 Score: 143
Period size: 34 Copynumber: 3.3 Consensus size: 34
109771 TAGGGTTTAG
* * *
109781 TTTTAAAAAAAATAATTAAATTAGGTTTTAAGGGT
1 TTTTAAAAAAATTAATTAAATTAGGATTT-AGAGT
*
109816 TTTTAAATAAATTAATTAAATTAGGATTTAGAGT
1 TTTTAAAAAAATTAATTAAATTAGGATTTAGAGT
* * **
109850 TTTTAAGAAAATTAATTAAATTAGGGTTTAGTTT
1 TTTTAAAAAAATTAATTAAATTAGGATTTAGAGT
109884 TTTTAAAAA
1 TTTTAAAAA
109893 TAATGTTGTG
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
34 41 0.61
35 26 0.39
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (34 bp):
TTTTAAAAAAATTAATTAAATTAGGATTTAGAGT
Found at i:109880 original size:34 final size:33
Alignment explanation
Indices: 109766--109892 Score: 141
Period size: 34 Copynumber: 3.8 Consensus size: 33
109756 TTTTAAAAAA
* * *
109766 TAAACTAGGGTTT--AGTTTTAAAAAAAATAAT
1 TAAATTAGGGTTTAGAGTTTTTAAAAAATTAAT
* *
109797 TAAATTAGGTTTTAAGGGTTTTTAAATAAATTAAT
1 TAAATTAGGGTTT-AGAGTTTTTAAA-AAATTAAT
*
109832 TAAATTAGGATTTAGAGTTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAGAGTTTTTAA-AAAATTAAT
**
109866 TAAATTAGGGTTTAGTTTTTTTAAAAA
1 TAAATTAGGGTTTAGAGTTTTTAAAAA
109893 TAATGTTGTG
Statistics
Matches: 81, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
31 11 0.14
33 3 0.04
34 47 0.58
35 20 0.25
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.43
Consensus pattern (33 bp):
TAAATTAGGGTTTAGAGTTTTTAAAAAATTAAT
Found at i:110696 original size:39 final size:39
Alignment explanation
Indices: 110634--110866 Score: 333
Period size: 39 Copynumber: 5.9 Consensus size: 39
110624 ATCGTGATCT
* * *
110634 GAAGCCCGAAGTCTAGCTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
110673 GAAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
* *
110712 GAAGCCCGGAGGCTAACTGAAGTACATACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAG--C--ACATAAGTGCTAAACG
*
110755 GAAGCCC-AGAGGTTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGA-AGGCTAACTGAAGCACATAAGTGCTAAACG
110794 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
*
110833 GAAGCCCGGAGGCTAACTGAAGCACATAAGTGCT
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCT
110867 GAACCTAAAC
Statistics
Matches: 176, Mismatches: 12, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
39 139 0.79
40 1 0.01
41 2 0.01
43 34 0.19
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.15
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACG
Found at i:110772 original size:82 final size:77
Alignment explanation
Indices: 110634--110862 Score: 323
Period size: 82 Copynumber: 2.9 Consensus size: 77
110624 ATCGTGATCT
* * *
110634 GAAGCCCGAAGTCTAGCTAAAGCACATAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACA
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAGCCCG-AGGCTAACTGAAGCACA
*
110699 TAAGAGCTAAATG
65 TAAGAGCTAAACG
* * *
110712 GAAGCCCGGAGGCTAACTGAAGTACATACATAAGTGCTAAATGGAAGCCCAGAGGTTAACTGAAG
1 GAAGCCCGAAGGCTAACTGAAG--C--ACATAAGTGCTAAACGGAAGCCC-GAGGCTAACTGAAG
*
110777 CACATAAGTGCTAAACG
61 CACATAAGAGCTAAACG
110794 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGGAGGCTAACTGAAGCACA
1 GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAGCCC-GAGGCTAACTGAAGCACA
110859 TAAG
65 TAAG
110863 TGCTGAACCT
Statistics
Matches: 134, Mismatches: 12, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
78 61 0.46
80 2 0.01
82 70 0.52
83 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.14
Consensus pattern (77 bp):
GAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGAGGCTAACTGAAGCACAT
AAGAGCTAAACG
Found at i:110930 original size:121 final size:119
Alignment explanation
Indices: 110656--110917 Score: 332
Period size: 121 Copynumber: 2.2 Consensus size: 119
110646 CTAGCTAAAG
* *
110656 CACATAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAATGGAAGCCCGG
1 CACATAAGAGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAACGGAAGCCCGG
** * * *
110721 AGGCTAACTGAAGTACATACATAAGTGCTAAATGGAAGCCCAGAGGTTAACTGAAG
66 AGGCTAACTGAAG-ACA-ACATAAGTGCTAAACCGAAACCCAAAGGTTAACTGAAA
* *
110777 CACATAAGTGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACATAAGTGCTAAACGGAAGCCCGG
1 CACATAAGAGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAACGGAAGCCCGG
* *
110842 AGGCTAACTGAAG-C-ACATAAGTGCTGAACCTAAACCTCAAAAGGGTTAACTGAAA
66 AGGCTAACTGAAGACAACATAAGTGCTAAACCGAAACC-C-AAA-GGTTAACTGAAA
* * *
110897 CTCATATGAG-TTAACGGAAGC
1 CACATAAGAGCTAAACGGAAGC
110918 TTGTAAGAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
117 17 0.14
118 1 0.01
119 13 0.10
120 18 0.14
121 76 0.61
ACGTcount: A:0.39, C:0.21, G:0.24, T:0.16
Consensus pattern (119 bp):
CACATAAGAGCTAAACGGAAGCCCGAAGGCTAACTGAAGCACATAAGAGCTAAACGGAAGCCCGG
AGGCTAACTGAAGACAACATAAGTGCTAAACCGAAACCCAAAGGTTAACTGAAA
Found at i:116551 original size:28 final size:28
Alignment explanation
Indices: 116513--116619 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
116503 GAATCATTCG
* *
116513 ATATTTTGCACACTAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
116541 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
116569 ATATTTCGTACATTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
116597 ATATTTCGTACACTAAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
116620 ATTTGATTGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 71 1.00
ACGTcount: A:0.30, C:0.24, G:0.10, T:0.36
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:119210 original size:126 final size:126
Alignment explanation
Indices: 119026--119443 Score: 570
Period size: 126 Copynumber: 3.3 Consensus size: 126
119016 AGGCTGTTAC
* * * * *
119026 AAAAAA-CTCCCACGTGGACGCTCTTTTTCTATAATAGTTCCTGAAAAAATTATATTGAGAAGAC
1 AAAAAAGCTCCCACGTAGACGCTCTTTCTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGAC
* * * *
119090 GGTTCTAAACAAATAGTGTCAAAAACGCTTTAAATAGGATGCACTATCAGTAAAATTGATG
66 GATTCTGAACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTATCAGCAAAATTGATG
* * *
119151 AAAAGAGCTCCCATGTGGACGCTCTTTCTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGAC
1 AAAAAAGCTCCCACGTAGACGCTCTTTCTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGAC
* * *
119216 GATTCTGAACAACTAGTGTCAAAAACGCTTTAAGTAGGATGCATTGTCAGCAAAATTGATG
66 GATTCTGAACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTATCAGCAAAATTGATG
* * * * * *
119277 AAAAAAGCTCCCACGTAGACGCTCTTTTTCTAAAGTAGTTCTTGAACAAATAATTTTAAGAAGAA
1 AAAAAAGCTCCCACGTAGACGCTCTTTCTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGAC
* * * * *
119342 TATTCTGAACAAATAGTTTCAAAAATGCTTCAAGCAGGATGCACTATCAGCAAAATTGATG
66 GATTCTGAACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTATCAGCAAAATTGATG
*
119403 AAAAAAGCTCCCA-GATAGATGCTCTTTCTCTATAGTAGTTC
1 AAAAAAGCTCCCACG-TAGACGCTCTTTCTCTATAGTAGTTC
119444 ATGTTCGGCC
Statistics
Matches: 258, Mismatches: 33, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
125 6 0.02
126 252 0.98
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (126 bp):
AAAAAAGCTCCCACGTAGACGCTCTTTCTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGAC
GATTCTGAACAAATAGTGTCAAAAACGCTTTAAGTAGGATGCACTATCAGCAAAATTGATG
Found at i:135172 original size:30 final size:30
Alignment explanation
Indices: 135138--135201 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
135128 TTAATTAAAC
*
135138 AGAGCTATGAGAAAATCAATGAGAAATTTG
1 AGAGCTATGAGAAAATCAAGGAGAAATTTG
* * * *
135168 AGAGCTTTGAGAAATTTAGGGAGAAATTTG
1 AGAGCTATGAGAAAATCAAGGAGAAATTTG
135198 AGAG
1 AGAG
135202 TTTTTTGCCA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.05, G:0.28, T:0.25
Consensus pattern (30 bp):
AGAGCTATGAGAAAATCAAGGAGAAATTTG
Found at i:152216 original size:15 final size:15
Alignment explanation
Indices: 152196--152224 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
152186 TTATGCCCTT
152196 ACTATGCTTATTTCA
1 ACTATGCTTATTTCA
152211 ACTATGCTTATTTC
1 ACTATGCTTATTTC
152225 TTTATCACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.21, G:0.07, T:0.48
Consensus pattern (15 bp):
ACTATGCTTATTTCA
Found at i:154466 original size:168 final size:166
Alignment explanation
Indices: 154137--154467 Score: 380
Period size: 168 Copynumber: 2.0 Consensus size: 166
154127 TGTCTCACCT
* * * * *
154137 GTTTCTATGTCTTTATTCTTGCCACTTTGATCTTGGAAGAAGGGTAGTTAAGGAAAAGATAGTTT
1 GTTTCTATGTCTTTATTCTTACCACTTTGATATTGGAAGAAGGCTAGTTAAAGAAAAGACAGTTT
* * * * * *
154202 GGAGAGAGGCCTCTATAGCATGATTGTCTTTTTAGTAAAGTGAAATTTAGACCAAGATAGAGTAT
66 GGAGAGAGGCCTCAATAACATGATTGGCTTTTTAGTAAAGTCAAATTTAAACCAAGATAAAGTAT
** * * *
154267 GACTTGAATGTATTTCGATGTGGGGTTTGTAAACTA
131 GACTCAAATGTATTTCAATGTGAGATTTGTAAACTA
* * *
154303 GTTT-TATGTCTTTATTCTTATCATTTTGATATTGGAAGAAGGCTATTTACAAGAAAAGGACAGT
1 GTTTCTATGTCTTTATTCTTACCACTTTGATATTGGAAGAAGGCTAGTTA-AAGAAAA-GACAGT
* * * * *
154367 TTGGAGTGAGGTCCT-AATAACATGATTGGCTTCTTTAGTAGAGTCTAATTTAAACTAAGTTAAA
64 TTGGAGAGAGG-CCTCAATAACATGATTGGCTT-TTTAGTAAAGTCAAATTTAAACCAAGATAAA
154431 GTATGA-TCCAAATGTATTTCAATGTGAGATTTGTAAA
127 GTATGACT-CAAATGTATTTCAATGTGAGATTTGTAAA
154468 TTCGAAAAGT
Statistics
Matches: 136, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
165 39 0.29
166 10 0.07
167 30 0.22
168 57 0.42
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (166 bp):
GTTTCTATGTCTTTATTCTTACCACTTTGATATTGGAAGAAGGCTAGTTAAAGAAAAGACAGTTT
GGAGAGAGGCCTCAATAACATGATTGGCTTTTTAGTAAAGTCAAATTTAAACCAAGATAAAGTAT
GACTCAAATGTATTTCAATGTGAGATTTGTAAACTA
Found at i:155206 original size:31 final size:31
Alignment explanation
Indices: 155165--155233 Score: 95
Period size: 33 Copynumber: 2.2 Consensus size: 31
155155 GTTAATAATT
*
155165 TATAAAAATT-AGATCAAATTAAAATTTTTA
1 TATAAAAATTAAGATCAAATTAAAATTTATA
*
155195 TATATAAAATTACAGATTAAATTAAAATTTATA
1 TATA-AAAATTA-AGATCAAATTAAAATTTATA
155228 TATAAA
1 TATAAA
155234 TTTGAGATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 4 0.12
31 6 0.18
32 2 0.06
33 22 0.65
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (31 bp):
TATAAAAATTAAGATCAAATTAAAATTTATA
Found at i:158062 original size:133 final size:133
Alignment explanation
Indices: 157890--158151 Score: 497
Period size: 133 Copynumber: 2.0 Consensus size: 133
157880 TACCCGTAGT
157890 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
1 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
157955 AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCTA
66 AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCTA
158020 CGG
131 CGG
158023 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
1 GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
* * *
158088 TGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAGGTTCTTGTCATAATATAGAACTTTCT
66 AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCT
158152 TTACGCTTTG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 126 1.00
ACGTcount: A:0.20, C:0.15, G:0.18, T:0.47
Consensus pattern (133 bp):
GGATTATGTTAGGGAGTAAATCCTGCTGTCTAAGGTTCTGCTATTTTCTGTTTTTGCATCTTCTT
AGCTTTTGATTCTATATTCTTTTGAGGTTTCTTTAAAAGTTCTCGTCATAATATAGAACTTTCTA
CGG
Found at i:164144 original size:12 final size:12
Alignment explanation
Indices: 164127--164157 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
164117 TTTCTTGGCG
164127 TTCATTTCTAGT
1 TTCATTTCTAGT
164139 TTCATTTCTAGT
1 TTCATTTCTAGT
164151 TTCATTT
1 TTCATTT
164158 AACATTGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.06, T:0.61
Consensus pattern (12 bp):
TTCATTTCTAGT
Found at i:181203 original size:40 final size:40
Alignment explanation
Indices: 181090--181227 Score: 177
Period size: 40 Copynumber: 3.5 Consensus size: 40
181080 CTCGAGAATA
* ** *
181090 TAAAGTGGATAGGATTCGTTCCTGATTCACTATAATACCT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
181130 CAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAATT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* * *
181170 TAAAGTGAATAGGATTTATTCCTGATTCACTATGGAAACT
1 TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
* *
181210 TAAGGCGGATAGGATTTG
1 TAAAGTGGATAGGATTTG
181228 ACCTGAAAAG
Statistics
Matches: 83, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 83 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTGTTCCTGATTCACTATGGTAACT
Found at i:181282 original size:78 final size:78
Alignment explanation
Indices: 181192--181343 Score: 214
Period size: 78 Copynumber: 1.9 Consensus size: 78
181182 GATTTATTCC
* * * *
181192 TGATTCACTATGGAAACTTAAGGCGGATAGGATTTGACCTGAAAAGGTAATCTTGATTCGCTACA
1 TGATTCACTATGGAAACCTAAGGCGGATAGGATTTGACCTGAAAAGATAATCCTGATTCACTACA
*
181257 GTTATATGATATA
66 GTTACATGATATA
* * * * *
181270 TGATTCATTATGGTAACCTAAGGTGGATAGGATTTGACTTGAAAATATAATCCTGATTCACTACA
1 TGATTCACTATGGAAACCTAAGGCGGATAGGATTTGACCTGAAAAGATAATCCTGATTCACTACA
181335 GTTACATGA
66 GTTACATGA
181344 GATGTGACTC
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 64 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (78 bp):
TGATTCACTATGGAAACCTAAGGCGGATAGGATTTGACCTGAAAAGATAATCCTGATTCACTACA
GTTACATGATATA
Found at i:196435 original size:21 final size:22
Alignment explanation
Indices: 196409--196449 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
196399 AGCAATTTTT
196409 ATTTTTAAATA-TAATATATCA
1 ATTTTTAAATATTAATATATCA
*
196430 ATTTTTTAATATTAATATAT
1 ATTTTTAAATATTAATATAT
196450 TTTTATTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
ATTTTTAAATATTAATATATCA
Found at i:202465 original size:75 final size:75
Alignment explanation
Indices: 202386--202828 Score: 778
Period size: 75 Copynumber: 5.9 Consensus size: 75
202376 AAACAATAGT
* * *
202386 AGAGGAAGCAAATGTGGTAATTGCCACAAGCCAAGTACAAGAAGAAGCGCTGCATGGGGTAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
202451 AAACCATTGA
66 AAACCATTGA
202461 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
202526 AAACCATTGA
66 AAACCATTGA
* * *
202536 AGAGGAAGCAACTGTGGTAATTGCCACAAACCAAGAACAAAAAGAAGCGCTGCATGGCGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
202601 AAACCATTGA
66 AAACCATTGA
* * *
202611 AGAGGAAGCAAATGTGGTCATTGCAACAAACCGAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
202676 AAACCATTGA
66 AAACCATTGA
*
202686 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAACGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
202751 AAACCATTGA
66 AAACCATTGA
* *
202761 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGTACAAGATGAAGCGCTGCATGGGGAAAAGG
1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
202826 AAA
66 AAA
202829 TCGCAACACC
Statistics
Matches: 349, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 349 1.00
ACGTcount: A:0.43, C:0.16, G:0.28, T:0.13
Consensus pattern (75 bp):
AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
AAACCATTGA
Found at i:204844 original size:45 final size:45
Alignment explanation
Indices: 204795--204881 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
204785 GTAGGAGCAA
* *
204795 TATGTACACAATTGGGATGAAAACAAGCTTCATCCAAGCAACCGG
1 TATGTACACAAGTGGGATGAAAACAAGCTTCACCCAAGCAACCGG
* * * * *
204840 TATGTGCGCAAGTGGGATGCAAGCGAGCTTCACCCAAGCAAC
1 TATGTACACAAGTGGGATGAAAACAAGCTTCACCCAAGCAAC
204882 ATGTGCGCAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (45 bp):
TATGTACACAAGTGGGATGAAAACAAGCTTCACCCAAGCAACCGG
Found at i:207057 original size:53 final size:53
Alignment explanation
Indices: 206976--207126 Score: 189
Period size: 53 Copynumber: 2.8 Consensus size: 53
206966 CTTACACGGT
*
206976 TCACATATCATACCGAA-GCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACC-AATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
* *
207031 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATCCGGAGTCACATTA
1 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** * *
207084 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGG
207127 GCGCACTTAT
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
52 3 0.03
53 76 0.88
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (53 bp):
TCACATTATACCAATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:212547 original size:14 final size:14
Alignment explanation
Indices: 212528--212579 Score: 50
Period size: 14 Copynumber: 3.5 Consensus size: 14
212518 TTATAACTTT
212528 TTAAAATTAAATAA
1 TTAAAATTAAATAA
*
212542 TTAAAATATAAATTTA
1 TTAAAAT-TAAA-TAA
*
212558 TTAATAATTTAATAA
1 TTAA-AATTAAATAA
*
212573 TTGAAAT
1 TTAAAAT
212580 CTACCTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
14 10 0.32
15 9 0.29
16 9 0.29
17 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (14 bp):
TTAAAATTAAATAA
Found at i:214466 original size:26 final size:26
Alignment explanation
Indices: 214415--214464 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
214405 TATTTAACAT
**
214415 TTAATAATTTTTTATATTTTTATTTA
1 TTAATAATTTTTTATATAGTTATTTA
214441 TTAA-AATTTTTTATATAGTTATTT
1 TTAATAATTTTTTATATAGTTATTT
214465 TAACTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (26 bp):
TTAATAATTTTTTATATAGTTATTTA
Found at i:219720 original size:53 final size:53
Alignment explanation
Indices: 219639--219789 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
219629 CTTACACGGT
* *
219639 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
219694 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
219747 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
219790 GCGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:221539 original size:18 final size:18
Alignment explanation
Indices: 221518--221554 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
221508 TATTTAAATG
221518 AAGTA-TTATATGAAAGTA
1 AAGTACTTA-ATGAAAGTA
221536 AAGTACTTAATGAAAGTA
1 AAGTACTTAATGAAAGTA
221554 A
1 A
221555 GATGAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.51, C:0.03, G:0.16, T:0.30
Consensus pattern (18 bp):
AAGTACTTAATGAAAGTA
Found at i:222566 original size:46 final size:46
Alignment explanation
Indices: 222464--222603 Score: 192
Period size: 46 Copynumber: 3.0 Consensus size: 46
222454 TTTGACATGA
* * * *
222464 TGCCATAGTGTCTTTCAACTATGGTCTTACTTATTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTAC--A--CA-TTTCATATCAGGT
222514 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
222560 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
222604 AGAGCACACT
Statistics
Matches: 85, Mismatches: 4, Indels: 6
0.89 0.04 0.06
Matches are distributed among these distances:
45 4 0.05
46 53 0.62
48 1 0.01
50 27 0.32
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:227934 original size:39 final size:39
Alignment explanation
Indices: 227889--228078 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 39
227879 ATGCAAGATA
227889 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
227928 CTGGAAATGTATCC-GG-----GT---GCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
227958 CTGGAAATGTATCAGGCCTAAAATCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
227997 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
228036 C-GGAAAATGTATCCAGGCTAAAGTCCCACAGGCTTTGTG
1 CTGG-AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
228075 CTGG
1 CTGG
228079 TAATATAATT
Statistics
Matches: 127, Mismatches: 13, Indels: 21
0.79 0.08 0.13
Matches are distributed among these distances:
30 25 0.20
31 1 0.01
33 2 0.02
36 1 0.01
38 4 0.03
39 92 0.72
40 2 0.02
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:268796 original size:44 final size:45
Alignment explanation
Indices: 268706--268834 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
268696 GACAGAACGA
*
268706 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
268752 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
268796 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
268835 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:274750 original size:44 final size:45
Alignment explanation
Indices: 274660--274788 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
274650 GACAGAACGA
*
274660 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
274706 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
274750 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
274789 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:276098 original size:2 final size:2
Alignment explanation
Indices: 276091--276122 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
276081 AGGATTTGTC
276091 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
276123 ATTTGACATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:278476 original size:3 final size:3
Alignment explanation
Indices: 278465--278498 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
278455 ATCATCCATT
278465 TAA TCAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
278499 ATGTTATGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:288576 original size:3 final size:3
Alignment explanation
Indices: 288568--288596 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
288558 CAACTCTGTG
288568 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
288597 TCTAGTGTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:293941 original size:17 final size:17
Alignment explanation
Indices: 293919--293952 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
293909 TTAAATTTTA
*
293919 TATAAGTTTCTAATAAT
1 TATAAGTATCTAATAAT
*
293936 TATAAGTATGTAATAAT
1 TATAAGTATCTAATAAT
293953 CTAATTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (17 bp):
TATAAGTATCTAATAAT
Found at i:297963 original size:18 final size:17
Alignment explanation
Indices: 297940--297992 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
297930 AAACTTTGGG
297940 AAAAAAGCGAAAAATCAA
1 AAAAAAGCGAAAAA-CAA
* *
297958 AAAAAA-AGAAAAAGAA
1 AAAAAAGCGAAAAACAA
*
297974 AAGAAAAGCTAAAAACAA
1 AA-AAAAGCGAAAAACAA
297992 A
1 A
297993 TAATCCAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 4 0.14
17 10 0.36
18 14 0.50
ACGTcount: A:0.77, C:0.08, G:0.11, T:0.04
Consensus pattern (17 bp):
AAAAAAGCGAAAAACAA
Found at i:304355 original size:23 final size:22
Alignment explanation
Indices: 304324--304367 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
304314 TTATTTTTTC
*
304324 CCAACTTTAAAATTTTTTATTAA
1 CCAAATTTAAAA-TTTTTATTAA
*
304347 CCAAATTTAACATTTTTATTA
1 CCAAATTTAAAATTTTTATTA
304368 GAGCTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.48
Consensus pattern (22 bp):
CCAAATTTAAAATTTTTATTAA
Found at i:304763 original size:22 final size:22
Alignment explanation
Indices: 304738--304788 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
304728 TAAAAGGTTA
*
304738 TAATCTTGAAATATTGATATCT
1 TAATCTTGAAATATTGACATCT
304760 TAATCTTGAAATATTGACATCT
1 TAATCTTGAAATATTGACATCT
304782 TAA-CTTG
1 TAATCTTG
304789 TATGGAACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (22 bp):
TAATCTTGAAATATTGACATCT
Found at i:308720 original size:22 final size:22
Alignment explanation
Indices: 308675--308720 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
308665 TTTGTCCACT
* *
308675 ATTTAAAATTTAATTCAATTTA
1 ATTTAAAATTTAACTCAATATA
* *
308697 ATTTCAAATTTAACTGAATATA
1 ATTTAAAATTTAACTCAATATA
308719 AT
1 AT
308721 ATAATTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.46, C:0.07, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTAAAATTTAACTCAATATA
Found at i:309001 original size:14 final size:15
Alignment explanation
Indices: 308984--309012 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
308974 CTTTTAATAT
308984 AATTATATTA-ATTA
1 AATTATATTATATTA
308998 AATTATATTATATTA
1 AATTATATTATATTA
309013 TTTATTTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AATTATATTATATTA
Found at i:328316 original size:33 final size:33
Alignment explanation
Indices: 328279--328341 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
328269 GCCACATTGA
* *
328279 TTTTATTTTATTTT-ATTTTACTTTACAGCCTCT
1 TTTTACTTTATTTTAATTTTAATTTA-AGCCTCT
*
328312 TTTTACTTTGTTTTAATTTTAATTTAAGCC
1 TTTTACTTTATTTTAATTTTAATTTAAGCC
328342 CCCTTTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 16 0.62
34 10 0.38
ACGTcount: A:0.21, C:0.13, G:0.05, T:0.62
Consensus pattern (33 bp):
TTTTACTTTATTTTAATTTTAATTTAAGCCTCT
Found at i:329093 original size:21 final size:21
Alignment explanation
Indices: 329032--329094 Score: 69
Period size: 21 Copynumber: 3.1 Consensus size: 21
329022 AATATTATTC
*
329032 ATATATTATTATT-T-AATAT
1 ATATATTATAATTATAAATAT
* *
329051 -TAATATTTTAATAATAAATAT
1 AT-ATATTATAATTATAAATAT
329072 ATATATTATAATTATAAATAT
1 ATATATTATAATTATAAATAT
329093 AT
1 AT
329095 TAATAAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
18 1 0.03
19 8 0.23
20 1 0.03
21 24 0.69
22 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATATTATAATTATAAATAT
Found at i:329734 original size:32 final size:33
Alignment explanation
Indices: 329684--329751 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
329674 TTTAGAAATT
*
329684 TATTTTAAGAAAATTCATC-AAACAACATAAAA
1 TATTTTAAGAAAATTCATCTAAACAACAGAAAA
* *
329716 TATTTTATATAAAA-TCATCTAAACATCAGAAAA
1 TATTTTA-AGAAAATTCATCTAAACAACAGAAAA
329749 TAT
1 TAT
329752 CAACTATTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 12 0.39
33 19 0.61
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (33 bp):
TATTTTAAGAAAATTCATCTAAACAACAGAAAA
Found at i:335548 original size:13 final size:15
Alignment explanation
Indices: 335530--335561 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
335520 TCTTTCCCTA
335530 TTTTTCA-TG-TTCT
1 TTTTTCATTGTTTCT
335543 TTTTTCATTGTTTCT
1 TTTTTCATTGTTTCT
335558 TTTT
1 TTTT
335562 GTTTTCTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.06, C:0.12, G:0.06, T:0.75
Consensus pattern (15 bp):
TTTTTCATTGTTTCT
Found at i:339821 original size:39 final size:40
Alignment explanation
Indices: 339656--339822 Score: 91
Period size: 39 Copynumber: 4.1 Consensus size: 40
339646 TAATAAGAAT
* *
339656 AATATTAAAGTAAAGTAA-AC---AATAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
* * *
339692 AATATATATATATGTATA-TAATAGAAATACACACTACTATATAATAA
1 AATAT-TA-A-AT-TAAAGTAATACAAA-A-ACAATACTATAT-AT-A
* * * *
339739 TAATAATAAA-TATAGAAATACAAAAAGCAA-A-TATAATAAA
1 -AATATTAAATTAAAGTAATACAAAAA-CAATACTAT-ATATA
339779 AATATTAAATTAAAGTAATA-AAAAACAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
339818 AATAT
1 AATAT
339823 ATATATATAC
Statistics
Matches: 98, Mismatches: 14, Indels: 35
0.67 0.10 0.24
Matches are distributed among these distances:
36 5 0.05
37 2 0.02
38 4 0.04
39 27 0.28
40 16 0.16
41 4 0.04
42 4 0.04
43 7 0.07
44 8 0.08
45 11 0.11
46 3 0.03
47 3 0.03
48 4 0.04
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (40 bp):
AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
Found at i:340092 original size:21 final size:21
Alignment explanation
Indices: 340066--340145 Score: 58
Period size: 21 Copynumber: 3.7 Consensus size: 21
340056 GAGGGCATAT
340066 ATAATATAATAATAATAAATA
1 ATAATATAATAATAATAAATA
* **
340087 ATAATAT-ATACATGAGGAATA
1 ATAATATAATA-ATAATAAATA
340108 ATAATA-AATAAATAACAGTAAA-A
1 ATAATATAAT-AAT-A-A-TAAATA
*
340131 ATAATAAAATAATAA
1 ATAATATAATAATAA
340146 AACAAAGCTC
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
20 3 0.07
21 25 0.54
22 2 0.04
23 11 0.24
24 5 0.11
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.28
Consensus pattern (21 bp):
ATAATATAATAATAATAAATA
Found at i:340475 original size:25 final size:25
Alignment explanation
Indices: 340443--340491 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
340433 AAAAACTAGC
* * *
340443 CTTTCCAAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAAAAAAAAAACCTT
340468 CTTTCCAAAAAAAAAAAAAAACCT
1 CTTTCCAAAAAAAAAAAAAAACCT
340492 CCTCCAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.55, C:0.22, G:0.02, T:0.20
Consensus pattern (25 bp):
CTTTCCAAAAAAAAAAAAAAACCTT
Found at i:340497 original size:23 final size:23
Alignment explanation
Indices: 340471--340525 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
340461 TAACCTTCTT
340471 TCCAAAAAAAAAAAAAAACCTCC
1 TCCAAAAAAAAAAAAAAACCTCC
* * * * *
340494 TCCAAAACAAAGAACAATCCTTC
1 TCCAAAAAAAAAAAAAAACCTCC
340517 TCCAAAAAA
1 TCCAAAAAA
340526 CCAAAAACCC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.58, C:0.27, G:0.02, T:0.13
Consensus pattern (23 bp):
TCCAAAAAAAAAAAAAAACCTCC
Found at i:341086 original size:44 final size:44
Alignment explanation
Indices: 341038--342294 Score: 981
Period size: 44 Copynumber: 28.6 Consensus size: 44
341028 TCTTCGATCC
* *
341038 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * * * *
341082 GTTCCCTATAAGCACAGGGATGTC--ATGCTGAAATCTTCGATCTA
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC-AACTT
* * * * * * * * *
341126 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
* *
341170 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* *
341214 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* *
341258 GTTCCCTATAAGCACAAGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
341302 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * *
341345 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATTTTCGA-TCC
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
* *
341390 ATTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
341434 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * * *
341477 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
*
341522 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
341566 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * * *
341609 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGATTT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* *
341654 GTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGAT-ATTTTCAACTT
* * *
341699 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGA-TCT
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTCAACT-T
* * * * * * * *
341742 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCT
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
* *
341787 GTTCCCTATAAGCATAGGGATGCCAAATCTGCTATTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * * *
341831 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTA
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATTTTC-AACTT
* * * * * * * * * *
341875 CTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCC
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
*
341919 GTTCCCTATAAGCACAGGGATGCCAAATCTGTTGA-TTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGAT-ATTTTCAACTT
*
341963 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
342007 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * * *
342050 GCTTCGCTATAAGCACAAGAATGTCAGATCTGCTATCTTCGA-TCC
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
*
342095 GTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
* * *
342139 GTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGATC-T
1 GTTCCCTATAAGCACAGGGATGCCAAAT-CTGATAT-TTTCAACTT
* * * * * * * * *
342182 GCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCC
1 G-TTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACT-T
*
342227 GTT-CCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTT
1 GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
342270 GTTCCCTATAAGCACAGGGATGCCA
1 GTTCCCTATAAGCACAGGGATGCCA
342295 TGCTGAAATC
Statistics
Matches: 955, Mismatches: 200, Indels: 116
0.75 0.16 0.09
Matches are distributed among these distances:
42 15 0.02
43 92 0.10
44 731 0.77
45 101 0.11
46 16 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
GTTCCCTATAAGCACAGGGATGCCAAATCTGATATTTTCAACTT
Found at i:341219 original size:132 final size:131
Alignment explanation
Indices: 340979--342352 Score: 1211
Period size: 132 Copynumber: 10.4 Consensus size: 131
340969 GGCGATATCC
* * * * * * *
340979 GCTATCTTTGATCTGCTTCACTATAAGCACAGGAATGTCAGATTTGCTATCTTCGA-TCCGTTCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACT-TGTTCC
*** * *
341043 CTATAAGCACAGGGATGCCAAAT-CTGCTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGTCA
65 CTATAAGCACAGGGATGCC--ATGCTGAAATTTTCAACTTGTTCACTATAAGCACAGGAATGTCA
341107 TG-CT
128 -GACT
** * * * * * *
341111 GAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCTGTTCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACT-TGTTCC
*** * * *
341175 CTATAAGCACAGGGATGCCAAAT-CTGTTGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
65 CTATAAGCACAGGGATGCC--ATGCTGAAATTTTCAACTTGTTCACTATAAGCACAGGAATGTCA
*
341239 AATCT
128 GA-CT
* * * * * * *
341244 GTTGTTTTC-AACTTG-TTCCCTATAAGCACAAGG-ATGCCAAATCTGATGTTTTCAACTTGTTC
1 GCTATCTTCGATC-TGCTTCCCTATAAGCAC-AGGAATGCCAAATCTGCTATCTTCAACTTGTTC
* * *
341306 CCTATAAGCACAGGGATGCCATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTC
64 CCTATAAGCACAGGGATGCCATGCTGAAAT-TTTCAACTTG-TTCACTATAAGCACAGGAATGTC
341370 AGATCT
127 AGA-CT
* * * * *
341376 GCTATTTTCGATC--CATTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCC
1 GCTATCTTCGATCTGC-TTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTTGTTCC
* * *
341439 CTATAAGCACAGGGATGCCATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCA
65 CTATAAGCACAGGGATGCCATGCTGAAAT-TTTCAACTTG-TTCACTATAAGCACAGGAATGTCA
341503 GATCT
128 GA-CT
* * * * *
341508 GCTATCTTCGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAACTTGTTCCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTTGTTCCC
* * *
341572 TATAAGCACAGGGATGCCATGCTGAAATCTTTGATC-TGCTTCACTGTAAGCACAGGAATGTCAG
66 TATAAGCACAGGGATGCCATGCTGAAAT-TTTCAACTTG-TTCACTATAAGCACAGGAATGTCAG
341636 ATCT
129 A-CT
* * * *
341640 GCTATCTTCGATTTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTTCAACTTGTTCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCT-ATCTTCAACTTGTTCC
* * *
341704 CTATAAGCACAGGGATGCCATGCTGAAATCTTCGA-TCTGCTTCACTGTAAGCACAGGAATGTCA
65 CTATAAGCACAGGGATGCCATGCTGAAATTTTCAACT-TG-TTCACTATAAGCACAGGAATGTCA
341768 GATCT
128 GA-CT
* * *
341773 GCTATCTTCGATCTG-TTCCCTATAAGCATAGGGATGCCAAATCTGCTATTTTCAACTTGTTCCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTTGTTCCC
* * ** *
341837 TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATGTCAGA
66 TATAAGCACAGGGATGCCATGCTGAAATTTTC-AACTTGTTCACTATAAGCACAGGAATGTCAGA
341902 TCT
130 -CT
* * *
341905 GCTATCTTCGATCCG-TTCCCTATAAGCACAGGGATGCCAAATCTGTTGAT-TTCAACTTGTTCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCT-ATCTTCAACTTGTTCC
** * * *
341968 CTATAAGCACAGGGATGCCAAAT-CTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
65 CTATAAGCACAGGGATGCC--ATGCTGAAATTTTCAACTTGTTCACTATAAGCACAGGAATGTCA
342032 TG-CT
128 -GACT
** * * * * * * *
342036 GAAATCTTTGATCTGCTTCGCTATAAGCACAAGAATGTCAGATCTGCTATCTTCGA-TCCGTTCC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACT-TGTTCC
** * * *
342100 CTATAAGCACAGGGATGCCAAAT-CTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
65 CTATAAGCACAGGGATGCC--ATGCTGAAATTTTCAACTTGTTCACTATAAGCACAGGAATGTCA
342164 TG-CT
128 -GACT
** * * * * * * *
342168 GAAATCTTTGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGA-TCCGTT-C
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACT-TGTTCC
** * * *
342231 CTATAAGCACAGGGATGCCAAAT-CTGATGTTTTCAACTTGTTCCCTATAAGCACAGGGATGCCA
65 CTATAAGCACAGGGATGCC--ATGCTGAAATTTTCAACTTGTTCACTATAAGCACAGGAATGTCA
342295 TG-CT
128 -GACT
** * * * * *
342299 GAAATCTTGGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTC
1 GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTC
342353 GGTCTGCTCC
Statistics
Matches: 1135, Mismatches: 81, Indels: 53
0.89 0.06 0.04
Matches are distributed among these distances:
130 2 0.00
131 147 0.13
132 837 0.74
133 146 0.13
134 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (131 bp):
GCTATCTTCGATCTGCTTCCCTATAAGCACAGGAATGCCAAATCTGCTATCTTCAACTTGTTCCC
TATAAGCACAGGGATGCCATGCTGAAATTTTCAACTTGTTCACTATAAGCACAGGAATGTCAGAC
T
Found at i:342485 original size:68 final size:68
Alignment explanation
Indices: 342406--342593 Score: 281
Period size: 68 Copynumber: 2.8 Consensus size: 68
342396 TCTTCTTCCA
* * *
342406 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAATGCCATTTCAGGAAGAAAAGAT
342471 -TT
66 CTT
* * *
342473 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAAAGA
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAATGCCATTTCAGGAAGAAAAGA
342538 TCCTT
65 T-CTT
*
342543 -TGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTTGCTCCAATGCCATTTC
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAATGCCATTTC
342594 CGGGAAAAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
68 106 0.98
70 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGTCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CTT
Found at i:342796 original size:132 final size:132
Alignment explanation
Indices: 342623--343533 Score: 641
Period size: 132 Copynumber: 7.0 Consensus size: 132
342613 ATTTCCAGCC
* * * * * * *
342623 TGTTACCCTACTACTTA-GGGTTTAAGGCCCATCATCTTCGATCTATTTCTCAACTACTTAAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGG
*
342687 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGG
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTCGG
342752 CT
131 CT
*
342754 TGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTT-AGAG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAG-G
*
342818 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCG
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTCG
342883 GCT
130 GCT
*
342886 TGTTA-CCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGG
* * * * * * *
342950 GATAAGATCTGT-AA--TTC-GATCTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGT--CT
66 GTTAAGATCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAG-GC-TT-GTAAAT
*
343009 TC-GAT
127 TCGGCT
* * ** * * *
343014 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTT-
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * ***
343076 AGGGGTTTAAG-GCTTGTAAA--TTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCA
62 AGGGG-TTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGT-A
** *
343138 TCTTC-GAT
124 AATTCGGCT
* * ** * * * * *
343146 CTGTTTCCCTACTGCTTAGGGGGAT-AAGATC-TGCA-ATTCGGTCTGTTACCCTACCGATT-AG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTTAAG
* ** * * *
343207 GGGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAA
64 GGG-TTAAGA-TCTGTAAATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCT-TGTAA
* *
343268 ATCTTCAGCC
125 A--TTCGGCT
* * *** ** * * *
343278 TGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTC-AGCTTGTTACCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATC-TGTTTCCCTACTGCTTAAGG
* ** * * * * * *
343341 GGTTAA-AGC-CCATCATCTTC-GATCTGTTTCCCTACTGCTTA-GGGGATAA-G-ATCTACAAT
65 GGTTAAGATCTGTA-AATCTTCAG-CCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTA-AAT
343400 TCGG-T
127 TCGGCT
* * * * * *
343405 CTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAAG
*
343469 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTC
64 GGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTC
343534 ACTGATTCTA
Statistics
Matches: 626, Mismatches: 106, Indels: 95
0.76 0.13 0.11
Matches are distributed among these distances:
127 8 0.01
128 52 0.08
129 76 0.12
130 92 0.15
131 159 0.25
132 230 0.37
133 9 0.01
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (132 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAAGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTCGG
CT
Found at i:343155 original size:218 final size:218
Alignment explanation
Indices: 342710--343534 Score: 1435
Period size: 218 Copynumber: 3.8 Consensus size: 218
342700 AATCTTCAGC
* * * * * * *
342710 CTGTTACCCTACTGCTTAGGGGGTTAAG-GCTTGTAAATTTGG-CTTGTTACCCTACTGTTTAGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATC-TG-CAATTCGGTC-TGTTACCCTACCGATTAGG
* * * *
342773 GGGTTAA-AGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCT
63 GGTTTAAGA-CCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCT
*
342837 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCTTGTTA-CCTACTGCTT
127 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTT
342901 AGGGGGTTAAAGCCCATCATCTTCGAT
192 AGGGGGTTAAAGCCCATCATCTTCGAT
* *
342928 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAATTCGATCTGTTACCCTACCGATTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
*
342993 TTAAGACCTTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
66 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
343058 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
131 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
343123 GGTTAAAGCCCATCATCTTCGAT
196 GGTTAAAGCCCATCATCTTCGAT
343146 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
343211 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
66 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
343276 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
131 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
343341 GGTTAAAGCCCATCATCTTCGAT
196 GGTTAAAGCCCATCATCTTCGAT
*
343364 CTGTTTCCCTACTGCTTA-GGGGATAAGATCTACAATTCGGTCTGTTACCCTACCGATTAGGGGT
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
343428 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
66 TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
343493 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
131 CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
343535 CTGATTCTAG
Statistics
Matches: 585, Mismatches: 18, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
217 284 0.49
218 300 0.51
219 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (218 bp):
CTGTTTCCCTACTGCTTAGGGGGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGGGGT
TTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAG
CCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGG
GGTTAAAGCCCATCATCTTCGAT
Found at i:343289 original size:349 final size:346
Alignment explanation
Indices: 342608--343432 Score: 978
Period size: 349 Copynumber: 2.4 Consensus size: 346
342598 AAAAAGAAAT
* * * *
342608 TTGTAATTTCCAGCCTGTTACCCTA-CTACTTA-GGGTTTAAGGCCCATCATCTTCGATCTATTT
1 TTGTAAATT-CAG-CTGTTACCCTACCGA-TTAGGGGTTTAAGACCCATCATCTTCGATCTGTTT
* * * *
342671 CTCAACTACTTAAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGGTTA
63 CCCTACTGCTT-AGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
** *
342736 AGGCTTGTAAATTTGGCTTGTTACCCTACTGTTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
127 AGGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGT
* * *
342801 TTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTT
192 TTCCCTACTGCTTAGAGGGATAAGATCTGTAAA-CTTCAGCCTGTTACCCTACCGATTAGGGGTT
* * *
342866 TAAGGCTTGTAAATTCGGCTTGTTACCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTG
256 TAAGCCTTGT-AATTCGGCTTGTTACCTACTGCTTAGGGGGTTAAAGCCCATAATCTTCGACCTG
* *
342931 TTTCCCTACTGCTTAGGGGGATAA-GA
320 TTACCCTACTGCTTAGGGGGATAAGGC
* ** *
342957 TCTGT-AATTCGATCTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTCGATCTGTTTC
1 T-TGTAAATTC-AGCTGTTACCCTACCGATTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTC
343021 CCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
64 CCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
343086 GGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTT
128 GGCTTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTT
* * * *
343151 TCCCTACTGCTTAGGGGGATAAGATCTG-CAA-TTCGGTCTGTTACCCTACCGATTAGGGGTTTA
193 TCCCTACTGCTTAGAGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACCGATTAGGGGTTTA
* * * * **
343214 AGACCCTTCGT-CTTC-GATCTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-A
258 AG--CCTT-GTAATTCGGCT-TG-TTACCTACTGCTTAGGGGGTTAAAG-CCCAT-AATCTTCGA
**
343275 GCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
316 -CCTGTTACCCTACTGCTTAGGGGGATAAGGC
* * *
343307 TTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAA-AGCCCATCATCTTCGATCTGTTTC
1 TTGTAAATTCAGC-TGTTACCCTACCGATTAGGGGTTTAAGA-CCCATCATCTTCGATCTGTTTC
* * * * *
343371 CCTACTGCTTAGGGGATAAGATC--TACAA--TTCGGTCTGTTACCCTACCGATTAGGGGTTTAA
64 CCTACTGCTTAGGGGTTAAGATCTGTA-AATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAA
343432 G
128 G
343433 ACCCTTCGTC
Statistics
Matches: 411, Mismatches: 47, Indels: 39
0.83 0.09 0.08
Matches are distributed among these distances:
346 62 0.15
347 10 0.02
348 46 0.11
349 230 0.56
350 63 0.15
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.35
Consensus pattern (346 bp):
TTGTAAATTCAGCTGTTACCCTACCGATTAGGGGTTTAAGACCCATCATCTTCGATCTGTTTCCC
TACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC
TTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCC
CTACTGCTTAGAGGGATAAGATCTGTAAACTTCAGCCTGTTACCCTACCGATTAGGGGTTTAAGC
CTTGTAATTCGGCTTGTTACCTACTGCTTAGGGGGTTAAAGCCCATAATCTTCGACCTGTTACCC
TACTGCTTAGGGGGATAAGGC
Found at i:343527 original size:435 final size:436
Alignment explanation
Indices: 342710--343534 Score: 1435
Period size: 435 Copynumber: 1.9 Consensus size: 436
342700 AATCTTCAGC
* * * *
342710 CTGTTACCCTACTGCTTAGGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGTTTAGGGG
1 CTGTTACCCTACTGCTTAGGGGGATAAGGCTTGTAAATTCGGCTTGTTACCCTACCGATTAGGGG
342775 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCA
66 GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCA
*
342840 GCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCGGCTTGTTACCTACTGCTTAGGG
131 GCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCTACTGCTTAGGG
**
342905 GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTGTAATTCGAT
196 GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTACAATTCGAT
*
342970 CTGTTACCCTACCGATTAGGGGTTTAAGACCTTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
261 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
343035 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
326 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
343100 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
391 GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
* * *
343146 CTGTTTCCCTACTGCTTAGGGGGATAA-GATCTG-CAATTCGG-TCTGTTACCCTACCGATTA-G
1 CTGTTACCCTACTGCTTAGGGGGATAAGGCT-TGTAAATTCGGCT-TGTTACCCTACCGATTAGG
* * * *
343207 GGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCT
64 GGGTTAAAG-CCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCT
343272 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCCTACTGCTT
128 TCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTA-CCTACTGCTT
343337 AGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-GGGGATAAGATCTACAATT
192 AGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTACAATT
*
343401 CGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
257 CGATCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTT
343466 AGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
322 AGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAA
343531 TTCA
387 TTCA
343535 CTGATTCTAG
Statistics
Matches: 369, Mismatches: 16, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
434 10 0.03
435 277 0.75
436 82 0.22
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (436 bp):
CTGTTACCCTACTGCTTAGGGGGATAAGGCTTGTAAATTCGGCTTGTTACCCTACCGATTAGGGG
GTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGAGGGTTAAGATCTGTAAATCTTCA
GCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCAGCTTGTTACCTACTGCTTAGGG
GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGATAAGATCTACAATTCGAT
CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTAAATTCA
GCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGAT
Found at i:343691 original size:66 final size:66
Alignment explanation
Indices: 343585--343711 Score: 218
Period size: 66 Copynumber: 1.9 Consensus size: 66
343575 TCTATGCTTA
*
343585 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATATGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATATGTTATGAAT
343650 G
66 G
* * *
343651 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATATGTTAT
343712 TATATGAATG
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 57 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACCAGATATGTTATGAAT
G
Found at i:344845 original size:15 final size:14
Alignment explanation
Indices: 344825--344864 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 14
344815 CTTTGGCCTC
344825 TTCTTTTTTTTCTTT
1 TTCTTTTTTTT-TTT
344840 TTCTTTTTTCTTTTT
1 TTCTTTTTT-TTTTT
344855 TTCTTTTTTT
1 TTCTTTTTTT
344865 GGTCTTAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 1 0.04
15 21 0.88
16 2 0.08
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTCTTTTTTTTTTT
Found at i:344847 original size:7 final size:7
Alignment explanation
Indices: 344830--344863 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
344820 GCCTCTTCTT
344830 TTTTTTC
1 TTTTTTC
344837 -TTTTTC
1 TTTTTTC
344843 TTTTTTC
1 TTTTTTC
344850 TTTTTTTC
1 -TTTTTTC
344858 TTTTTT
1 TTTTTT
344864 TGGTCTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.24
7 12 0.48
8 7 0.28
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTC
Found at i:344848 original size:8 final size:8
Alignment explanation
Indices: 344825--344864 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
344815 CTTTGGCCTC
344825 TTCTTTTT
1 TTCTTTTT
*
344833 TT-TCTTT
1 TTCTTTTT
344840 TTC-TTTT
1 TTCTTTTT
344847 TTCTTTTT
1 TTCTTTTT
344855 TTCTTTTT
1 TTCTTTTT
344863 TT
1 TT
344865 GGTCTTAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 12 0.43
8 16 0.57
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTCTTTTT
Found at i:344848 original size:13 final size:13
Alignment explanation
Indices: 344830--344854 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
344820 GCCTCTTCTT
344830 TTTTTTCTTTTTC
1 TTTTTTCTTTTTC
344843 TTTTTTCTTTTT
1 TTTTTTCTTTTT
344855 TTCTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:349318 original size:39 final size:40
Alignment explanation
Indices: 349153--349319 Score: 91
Period size: 39 Copynumber: 4.1 Consensus size: 40
349143 TAATAAGAAT
* *
349153 AATATTAAAGTAAAGTAA-AC---AATAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
* * *
349189 AATATATATATATGTATA-TAATAGAAATACACACTACTATATAATAA
1 AATAT-TA-A-AT-TAAAGTAATACAAA-A-ACAATACTATAT-AT-A
* * * *
349236 TAATAATAAA-TATAGAAATACAAAAAGCAA-A-TATAATAAA
1 -AATATTAAATTAAAGTAATACAAAAA-CAATACTAT-ATATA
349276 AATATTAAATTAAAGTAATA-AAAAACAATACTATATATA
1 AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
349315 AATAT
1 AATAT
349320 ATATATATAT
Statistics
Matches: 98, Mismatches: 14, Indels: 35
0.67 0.10 0.24
Matches are distributed among these distances:
36 5 0.05
37 2 0.02
38 4 0.04
39 27 0.28
40 16 0.16
41 4 0.04
42 4 0.04
43 7 0.07
44 8 0.08
45 11 0.11
46 3 0.03
47 3 0.03
48 4 0.04
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (40 bp):
AATATTAAATTAAAGTAATACAAAAACAATACTATATATA
Found at i:349576 original size:3 final size:3
Alignment explanation
Indices: 349563--349645 Score: 57
Period size: 3 Copynumber: 27.3 Consensus size: 3
349553 GAGGGCATAT
**
349563 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GGA ATA ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A ATA ATA ATA
* *
349610 ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
349646 AACAAAGCTC
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
2 8 0.13
3 45 0.71
4 9 0.14
5 1 0.02
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:349587 original size:12 final size:12
Alignment explanation
Indices: 349563--349642 Score: 67
Period size: 12 Copynumber: 6.8 Consensus size: 12
349553 GAGGGCATAT
349563 ATAATAT-AATA
1 ATAATATAAATA
349574 ATAATATAAATA
1 ATAATATAAATA
*
349586 ATAATATATACATG
1 ATAATATA-A-ATA
**
349600 AGGA-AT-AATA
1 ATAATATAAATA
349610 ATAATATAAATA
1 ATAATATAAATA
* *
349622 ATAGTAAAAATA
1 ATAATATAAATA
*
349634 ATAAAATAA
1 ATAATATAA
349643 TAAAACAAAG
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
10 4 0.08
11 10 0.19
12 32 0.60
13 3 0.06
14 4 0.08
ACGTcount: A:0.64, C:0.01, G:0.05, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:349593 original size:30 final size:32
Alignment explanation
Indices: 349559--349624 Score: 82
Period size: 36 Copynumber: 2.0 Consensus size: 32
349549 TGAAGAGGGC
349559 ATATATA-AT-ATAATAATAATATAAATAATA
1 ATATATACATGATAATAATAATATAAATAATA
349589 ATATATACATGAGGAATAATAATAATATAAATAATA
1 ATATATACAT---G-ATAATAATAATATAAATAATA
349625 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
30 7 0.23
31 2 0.07
36 21 0.70
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (32 bp):
ATATATACATGATAATAATAATATAAATAATA
Found at i:349994 original size:25 final size:26
Alignment explanation
Indices: 349944--350002 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
349934 AAAAACTAGC
* *
349944 CTTTCC-AAGAAACAAAAATAACCTT
1 CTTTCCAAAAAAACAAAAATAAACTT
349969 CTTTCCAAAAAAACAAAAA-AAACTT
1 CTTTCCAAAAAAACAAAAATAAACTT
*
349994 C-CTCCAAAA
1 CTTTCCAAAA
350003 CAAAGAACAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.23
25 12 0.40
26 11 0.37
ACGTcount: A:0.53, C:0.25, G:0.02, T:0.20
Consensus pattern (26 bp):
CTTTCCAAAAAAACAAAAATAAACTT
Found at i:350401 original size:12 final size:12
Alignment explanation
Indices: 350384--350409 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
350374 TGAAAACCTC
350384 TATCTCGACAAA
1 TATCTCGACAAA
350396 TATCTCGACAAA
1 TATCTCGACAAA
350408 TA
1 TA
350410 GCCAATTAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (12 bp):
TATCTCGACAAA
Found at i:353469 original size:2 final size:2
Alignment explanation
Indices: 353462--353487 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
353452 TCATTTCAAC
353462 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
353488 GATCAAACAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:354321 original size:70 final size:70
Alignment explanation
Indices: 354224--354358 Score: 227
Period size: 70 Copynumber: 1.9 Consensus size: 70
354214 ACAATGAGCC
* * *
354224 ATTTTTAACAATAGAAATTGATGAAATTTTTAACAGAAGGGCTT-ATTTGCTCTTTTATCTAACA
1 ATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGG-TTAATTTGCTCTTTTATCTAACA
354288 TGGCTA
65 TGGCTA
354294 ATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGGTTAATTTGCTCTTTTATCTAACAT
1 ATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGGTTAATTTGCTCTTTTATCTAACAT
354359 ACTTAGTTTC
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 2 0.03
70 59 0.97
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (70 bp):
ATTTTTAACAATAGAAATAGATAAAATTTTTAACAGAAAGGTTAATTTGCTCTTTTATCTAACAT
GGCTA
Found at i:362280 original size:3 final size:3
Alignment explanation
Indices: 362272--362332 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
362262 TGACTAAGAA
362272 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
362320 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
362333 TATTGGGAAG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:362826 original size:2 final size:2
Alignment explanation
Indices: 362819--362859 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
362809 AATTATGTGA
362819 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
362860 AGATTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:364850 original size:21 final size:22
Alignment explanation
Indices: 364824--364874 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 22
364814 GCATATATGT
364824 ATAATAAT-GATGAAAATA-ATA
1 ATAATAATAG-TGAAAATAGATA
364845 ATAATAATAGTGAAAATAGGATA
1 ATAATAATAGTGAAAATA-GATA
364868 ATAATAA
1 ATAATAA
364875 ATATAATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 16 0.59
22 1 0.04
23 10 0.37
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (22 bp):
ATAATAATAGTGAAAATAGATA
Found at i:364893 original size:26 final size:29
Alignment explanation
Indices: 364838--364896 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
364828 TAATGATGAA
364838 AATAATAATAATAATAGTGAAAATAGGAT
1 AATAATAATAATAATAGTGAAAATAGGAT
364867 AATAATAA-ATATAATAGT-AAAA-A-GAT
1 AATAATAATA-ATAATAGTGAAAATAGGAT
364893 AATA
1 AATA
364897 CTATATGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 7 0.24
27 1 0.03
28 5 0.17
29 16 0.55
ACGTcount: A:0.63, C:0.00, G:0.10, T:0.27
Consensus pattern (29 bp):
AATAATAATAATAATAGTGAAAATAGGAT
Found at i:365099 original size:3 final size:3
Alignment explanation
Indices: 365081--365135 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
365071 AAACGTATAC
* * *
365081 TAA TACA TAG TAA TAA TAA TAA CAA TAA TAA TAA TAA TAC TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
365127 TAA TAA TAA
1 TAA TAA TAA
365136 ATAAGAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:380108 original size:59 final size:56
Alignment explanation
Indices: 380005--380119 Score: 203
Period size: 59 Copynumber: 2.0 Consensus size: 56
379995 ACCTGCTCTA
380005 ATACCAATAAATGCAACGCCCCACCCGAAACCGTCACCGGAGTCAAGCTTGAGGTG
1 ATACCAATAAATGCAACGCCCCACCCGAAACCGTCACCGGAGTCAAGCTTGAGGTG
380061 ATACCAATAAATGCAACGCCCCCACGCCCGAAACCGTCACCGGAGTCAAGCTTGAGGTG
1 ATACCAATAAATGCAACG-CCCCA--CCCGAAACCGTCACCGGAGTCAAGCTTGAGGTG
380120 TTACTAAACT
Statistics
Matches: 56, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
56 18 0.32
57 5 0.09
59 33 0.59
ACGTcount: A:0.31, C:0.33, G:0.22, T:0.14
Consensus pattern (56 bp):
ATACCAATAAATGCAACGCCCCACCCGAAACCGTCACCGGAGTCAAGCTTGAGGTG
Found at i:381368 original size:2 final size:2
Alignment explanation
Indices: 381361--381390 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
381351 CTCCAATGCC
381361 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
381391 TATGGGCTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:383885 original size:20 final size:20
Alignment explanation
Indices: 383860--383902 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
383850 TCATATTTGG
*
383860 CATGGAGCATATTTAAAACA
1 CATGGAGCAAATTTAAAACA
* *
383880 CATGGATCAAATTTTAAACA
1 CATGGAGCAAATTTAAAACA
383900 CAT
1 CAT
383903 TTGTACCTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (20 bp):
CATGGAGCAAATTTAAAACA
Found at i:391100 original size:54 final size:54
Alignment explanation
Indices: 391042--391152 Score: 213
Period size: 54 Copynumber: 2.1 Consensus size: 54
391032 AAATGATAGC
*
391042 TTTTATCATTTTTGTCTTATTAGGTTATTTTAATTAATTTACGAAATTACCCTT
1 TTTTATCATTTTTGTCTTATTAGGTTATTTTAATTAATTTACAAAATTACCCTT
391096 TTTTATCATTTTTGTCTTATTAGGTTATTTTAATTAATTTACAAAATTACCCTT
1 TTTTATCATTTTTGTCTTATTAGGTTATTTTAATTAATTTACAAAATTACCCTT
391150 TTT
1 TTT
391153 ATTTCAACCA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 56 1.00
ACGTcount: A:0.26, C:0.11, G:0.06, T:0.57
Consensus pattern (54 bp):
TTTTATCATTTTTGTCTTATTAGGTTATTTTAATTAATTTACAAAATTACCCTT
Found at i:396773 original size:21 final size:21
Alignment explanation
Indices: 396747--396787 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
396737 AGACAAGCGA
* *
396747 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
396768 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
396788 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:407819 original size:2 final size:2
Alignment explanation
Indices: 407812--407837 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
407802 TGAAAGATTT
407812 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
407838 AAAGTAAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:408177 original size:83 final size:83
Alignment explanation
Indices: 408076--408230 Score: 274
Period size: 83 Copynumber: 1.9 Consensus size: 83
408066 TTAGTAAATC
*
408076 AAATTACATTTTACTTCTCTACTAAAATATTAAATAAATTACTCTTTATTCGTAAAATAAAAAAA
1 AAATTACATTTTACTTCTCTACTAAAATATTAAATAAATTAATCTTTATTCGTAAAATAAAAAAA
408141 AAACTAATCTTTATATTA
66 AAACTAATCTTTATATTA
* * *
408159 AAATTTCATTTTACTTCTCTACTAAAATATTAGATAAATTAATCTTTATTCGTAAAATAAAATAA
1 AAATTACATTTTACTTCTCTACTAAAATATTAAATAAATTAATCTTTATTCGTAAAATAAAAAAA
408224 AAACTAA
66 AAACTAA
408231 CCTATTAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (83 bp):
AAATTACATTTTACTTCTCTACTAAAATATTAAATAAATTAATCTTTATTCGTAAAATAAAAAAA
AAACTAATCTTTATATTA
Found at i:412808 original size:3 final size:3
Alignment explanation
Indices: 412800--412831 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
412790 TGTACTTGTA
412800 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
412832 ATTTACATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:413270 original size:19 final size:19
Alignment explanation
Indices: 413238--413275 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
413228 AATAAAATTT
*
413238 AAATAATAATTTATTGTTTG
1 AAATAATAAGTTATT-TTTG
413258 AAAT-ATAAGTTATTTTTG
1 AAATAATAAGTTATTTTTG
413276 CTCTGATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (19 bp):
AAATAATAAGTTATTTTTG
Found at i:414667 original size:15 final size:15
Alignment explanation
Indices: 414647--414691 Score: 90
Period size: 15 Copynumber: 3.0 Consensus size: 15
414637 TGGTTTTTGG
414647 GTGAAGCATGCTGAC
1 GTGAAGCATGCTGAC
414662 GTGAAGCATGCTGAC
1 GTGAAGCATGCTGAC
414677 GTGAAGCATGCTGAC
1 GTGAAGCATGCTGAC
414692 ACAGGTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (15 bp):
GTGAAGCATGCTGAC
Found at i:428025 original size:24 final size:24
Alignment explanation
Indices: 427980--428026 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
427970 AAGGATAAAG
**
427980 TTAAAATATAATTTTATCATTTTA
1 TTAAAATATAATTTTAAAATTTTA
* *
428004 TTAACATATTATTTTAAAATTTT
1 TTAAAATATAATTTTAAAATTTT
428027 TAAAGAGATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.55
Consensus pattern (24 bp):
TTAAAATATAATTTTAAAATTTTA
Found at i:428112 original size:2 final size:2
Alignment explanation
Indices: 428105--428143 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
428095 TATTAATTAA
428105 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
428144 ACTAGCGTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:452664 original size:3 final size:3
Alignment explanation
Indices: 452656--452711 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
452646 TGTAATAAAG
452656 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
452704 ATA ATA AT
1 ATA ATA AT
452712 GAAAATACAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:454720 original size:57 final size:57
Alignment explanation
Indices: 454597--454752 Score: 196
Period size: 57 Copynumber: 2.8 Consensus size: 57
454587 CATATGACCT
* * * *
454597 AAGGCTCAACTCACTTCTCGCAATATGGGTTGATTTTTTG--AAAAACAAAAATTAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAAAAAAAAAATTAA
* *
454652 AAGG-TATAACTCACCTATCGCAATATGAGTTG-CTTTTTGAAAAAAAAAAGAAATTAA
1 AAGGCT-CAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAAAAAAA-AAATTAA
*
454709 AAGGCTCAACTCACCTCTCGTAATATGAGTTGAC-TTTTGAAAAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAA
454753 CAGGAATTGG
Statistics
Matches: 86, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
54 7 0.08
55 26 0.30
56 7 0.08
57 44 0.51
58 2 0.02
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (57 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGACTTTTTGAAAAAAAAAAAAATTAA
Found at i:455059 original size:172 final size:171
Alignment explanation
Indices: 454774--455106 Score: 515
Period size: 172 Copynumber: 1.9 Consensus size: 171
454764 AAGTGGAAAA
* *
454774 TGAAAATACCTCAGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGGTGATTTTTGAAAC
1 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGGTGATTTTTGAAAC
*
454839 ATAAATTGAAATTACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
66 ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
454904 -GGAAAAGTAAAGATTAAAGACAGGATTTGAACAAGAGAATT
131 AGG-AAAGTAAAAATTAAAAACAGAATTTGAACAAGAGAATT
* * * * *
454945 TGAAAATACCTCGGCGTGCCCCGAGGCTCAACTTACTTCTCGCAATATAAGTTGATTTTTTGAAG
1 TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGGTGA-TTTTTGAAA
* * *
455010 CATAAATTGAAATTACCTCAACGTTTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGGTTT
65 CATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
455075 TAGGAAAGTAAAAATTAAAAACAGAATTTGAA
130 TAGGAAAGTAAAAATTAAAAACAGAATTTGAA
455107 ATACCTCGAC
Statistics
Matches: 146, Mismatches: 14, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
171 49 0.34
172 95 0.65
173 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (171 bp):
TGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATAAGGTGATTTTTGAAAC
ATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
AGGAAAGTAAAAATTAAAAACAGAATTTGAACAAGAGAATT
Found at i:455518 original size:74 final size:71
Alignment explanation
Indices: 455268--455620 Score: 386
Period size: 74 Copynumber: 4.9 Consensus size: 71
455258 AGAAATTAAA
* * * * * *
455268 AGGCTTAACTCACCTTTCGCAAGATGAGTCAATTTTTCTAAACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTT-GAAACATAAATTAAAAATACCTCAGCG
* *
455333 TGCCCCG
65 TGACCTG
* * * * *
455340 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAG-AACATAAATTGAAATTACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
* *
455404 GTCTTG
66 GACCTG
*
455410 AGGCTCAACTCACCTCTCGCAATATGAG-CTGATTTTTGAAACAACAGGAATTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTC-GATTTTTGAAAC-ATA--AATTAAAAATACCTCA
455474 GCGTGACCTG
62 GCGTGACCTG
** *
455484 AGGCTTGACTCACCTCTCGCAATATGAGTCGATTTTTTGAAACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTGAAACATAAATTAAAAATACCTCAGC-
455549 TGTGACCTG
64 -GTGACCTG
** * * * *
455558 AGGCTCAACTCATTTCTCGCAACATGAGTTGATTTTTGAAAACATGAATTAAAGATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTG-AAACATAAATTAAAAATACCTCAG
455621 AGTACCCAAA
Statistics
Matches: 236, Mismatches: 35, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
70 60 0.25
71 3 0.01
72 50 0.21
73 6 0.03
74 106 0.45
75 11 0.05
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAACATAAATTAAAAATACCTCAGCGT
GACCTG
Found at i:456471 original size:15 final size:15
Alignment explanation
Indices: 456451--456480 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
456441 TGATCCCCTT
456451 TTTCTTTTTTATTTA
1 TTTCTTTTTTATTTA
*
456466 TTTCTTTTTTTTTTA
1 TTTCTTTTTTATTTA
456481 GATGCCCTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTCTTTTTTATTTA
Done.