Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 113 of 328
Found at i:32007673 original size:28 final size:28
Alignment explanation
Indices: 32007635--32007741 Score: 133
Period size: 28 Copynumber: 3.8 Consensus size: 28
32007625 GAATCATTCG
* * *
32007635 ATATTTTGCACACGAAGTGTCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
*
32007663 ATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* *
32007691 ATATTTTGTACACTAAGTGCCATTCTCA
1 ATATTTCGCACACTAAGTGCCATTCTCA
* * *
32007719 ATATTTCGTACACTGAGTACCAT
1 ATATTTCGCACACTAAGTGCCAT
32007742 ATTTGATTGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (28 bp):
ATATTTCGCACACTAAGTGCCATTCTCA
Found at i:32007696 original size:56 final size:56
Alignment explanation
Indices: 32007635--32007741 Score: 151
Period size: 56 Copynumber: 1.9 Consensus size: 56
32007625 GAATCATTCG
* *
32007635 ATATTTTGCACACGAAGTGTCATTCTCAATATCTCGCACACTAAGTGCCATTCTCA
1 ATATTTTGCACACGAAGTGCCATTCTCAATATCTCGCACACTAAGTACCATTCTCA
* * * * *
32007691 ATATTTTGTACACTAAGTGCCATTCTCAATATTTCGTACACTGAGTACCAT
1 ATATTTTGCACACGAAGTGCCATTCTCAATATCTCGCACACTAAGTACCAT
32007742 ATTTGATTGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
56 44 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (56 bp):
ATATTTTGCACACGAAGTGCCATTCTCAATATCTCGCACACTAAGTACCATTCTCA
Found at i:32012304 original size:47 final size:47
Alignment explanation
Indices: 32012232--32012448 Score: 207
Period size: 46 Copynumber: 4.7 Consensus size: 47
32012222 GTTATTGTGA
* *
32012232 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGAGATGAGT
*
32012280 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTA-T
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGAGATG-AGT
* * * * *
32012326 GCCAGTATAAGA-CATGTCTGGGAC-TTGCATCGACTACGAGATGTGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGAGATGAGT
* * *
32012372 -CT-GTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-ATGG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGA-GT
* **
32012417 GCCAGTGTAAGACCATGTCAAGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
32012449 TGGCACCTTA
Statistics
Matches: 142, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
44 7 0.05
45 22 0.15
46 59 0.42
47 42 0.30
48 12 0.08
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGAGT
Found at i:32013381 original size:21 final size:21
Alignment explanation
Indices: 32013355--32013399 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
32013345 TGTGGGACAT
32013355 GGGCGTCTTA-CACTTCCACAC
1 GGGCGTCTTATCACTT-CACAC
* *
32013376 GGGCGTGTTATCGCTTCACAC
1 GGGCGTCTTATCACTTCACAC
32013397 GGG
1 GGG
32013400 TGTGTACCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.16, C:0.31, G:0.29, T:0.24
Consensus pattern (21 bp):
GGGCGTCTTATCACTTCACAC
Found at i:32016425 original size:2 final size:2
Alignment explanation
Indices: 32016418--32016449 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
32016408 ACTTTAATAC
*
32016418 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32016450 CCCTTTCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32017820 original size:2 final size:2
Alignment explanation
Indices: 32017813--32017849 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
32017803 CGAATTTATC
*
32017813 TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32017850 ACTGAATGTC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:32025503 original size:70 final size:71
Alignment explanation
Indices: 32025420--32025582 Score: 319
Period size: 70 Copynumber: 2.3 Consensus size: 71
32025410 CGATTTGTCT
32025420 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32025484 CTTTCA
66 CTTTCA
32025490 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32025555 CTTTCA
66 CTTTCA
32025561 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
32025583 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 52 0.57
71 40 0.43
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:32025620 original size:71 final size:70
Alignment explanation
Indices: 32025420--32025616 Score: 249
Period size: 70 Copynumber: 2.8 Consensus size: 70
32025410 CGATTTGTCT
* * * *
32025420 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACC-AGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
32025484 CTTTCA
65 CTTTCA
* * * *
32025490 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
32025555 CTTTCA
65 CTTTCA
* *
32025561 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
32025617 TACAGGGTGT
Statistics
Matches: 119, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 53 0.45
71 43 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:32033017 original size:66 final size:68
Alignment explanation
Indices: 32032939--32033125 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
32032929 TAGTACCACT
*
32032939 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
32033001 CACG
65 CACG
32033005 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
32033070 ATCACG
63 ATCACG
32033076 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
32033126 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:32033050 original size:71 final size:71
Alignment explanation
Indices: 32032962--32033125 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32032952 CGATTTGTCT
32032962 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32033027 CTTTCA
66 CTTTCA
32033033 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
32033098 CTTTCA
66 CTTTCA
32033104 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
32033126 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:32033163 original size:71 final size:70
Alignment explanation
Indices: 32032962--32033159 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
32032952 CGATTTGTCT
* * * *
32032962 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
32033027 CTTTCA
65 CTTTCA
* * * *
32033033 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
32033098 CTTTCA
65 CTTTCA
* *
32033104 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
32033160 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:32047691 original size:46 final size:46
Alignment explanation
Indices: 32047641--32047813 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
32047631 TGGTTGAGCA
32047641 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
32047687 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
32047732 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
32047780 -CCTGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
32047814 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 12, Indels: 20
0.77 0.09 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 58 0.55
47 29 0.28
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:32047797 original size:93 final size:93
Alignment explanation
Indices: 32047638--32047808 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
32047628 GGATGGTTGA
*
32047638 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
32047703 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
32047731 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATTCGAACG-CCTGAGCTTGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
32047795 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
32047809 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:32065493 original size:20 final size:21
Alignment explanation
Indices: 32065468--32065520 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
32065458 TTGAATTTTA
32065468 TGAAAAAGAAAACTTT-GAG-T
1 TGAAAAAGAAAA-TTTAGAGCT
*
32065488 TGAAAATG-AAATTTGAGAGCT
1 TGAAAAAGAAAATTT-AGAGCT
32065509 TGAAAAAGAAAA
1 TGAAAAAGAAAA
32065521 ATGAAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 3 0.11
19 3 0.11
20 10 0.37
21 8 0.30
22 3 0.11
ACGTcount: A:0.53, C:0.04, G:0.21, T:0.23
Consensus pattern (21 bp):
TGAAAAAGAAAATTTAGAGCT
Found at i:32070748 original size:27 final size:27
Alignment explanation
Indices: 32070717--32070770 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
32070707 AAAATTTGGT
32070717 TATGAACTATCAAATTGAATTTAAATA
1 TATGAACTATCAAATTGAATTTAAATA
*
32070744 TATGAACTATCAAATTTAATTTAAATA
1 TATGAACTATCAAATTGAATTTAAATA
32070771 CCTTCTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.39
Consensus pattern (27 bp):
TATGAACTATCAAATTGAATTTAAATA
Found at i:32079201 original size:59 final size:59
Alignment explanation
Indices: 32079134--32079254 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
32079124 TAACTGCTAT
*
32079134 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACGGAAATGACCAATAGAG
1 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
32079193 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
1 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
32079252 ATT
1 ATT
32079255 CGTTACAGTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (59 bp):
ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
Found at i:32081766 original size:24 final size:24
Alignment explanation
Indices: 32081729--32081786 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
32081719 CTGGAGGCCT
*
32081729 AGCCTCTTTTAATAACTTGGCCAAA
1 AGCC-CTTTTAATAACTGGGCCAAA
* *
32081754 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGCCAAA
32081778 AGCCCTTTT
1 AGCCCTTTT
32081787 GCACTTCCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 26 0.87
25 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGCCAAA
Found at i:32081858 original size:9 final size:9
Alignment explanation
Indices: 32081844--32081900 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32081834 ATCTCATGTG
32081844 CATATCATA
1 CATATCATA
*
32081853 CATATCATGTG
1 CATATCA--TA
32081864 CATATCATA
1 CATATCATA
* *
32081873 CATGTCATGTG
1 CATATCA--TA
32081884 CATATCATA
1 CATATCATA
32081893 CATATCAT
1 CATATCAT
32081901 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32081860 original size:20 final size:20
Alignment explanation
Indices: 32081832--32081902 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
32081822 GCATTTATGA
*
32081832 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32081852 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
32081872 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32081892 ACATATCATGT
1 ACATATCATGT
32081903 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32081867 original size:11 final size:11
Alignment explanation
Indices: 32081837--32081891 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32081827 TATGAACATC
32081837 TCATGTGCATA
1 TCATGTGCATA
*
32081848 TCA--TACATA
1 TCATGTGCATA
32081857 TCATGTGCATA
1 TCATGTGCATA
* *
32081868 TCA--TACATG
1 TCATGTGCATA
32081877 TCATGTGCATA
1 TCATGTGCATA
32081888 TCAT
1 TCAT
32081892 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:32081967 original size:25 final size:25
Alignment explanation
Indices: 32081939--32081986 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32081929 ATATATAAAC
* * *
32081939 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32081964 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32081987 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32085514 original size:46 final size:45
Alignment explanation
Indices: 32085454--32085719 Score: 339
Period size: 46 Copynumber: 6.0 Consensus size: 45
32085444 TTTGACATGA
* * * * * *
32085454 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
*** *
32085500 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
32085546 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAGGT
*
32085592 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTATCAGGT
32085638 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--TCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
32085676 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TATCAG
32085720 AGAGCACACT
Statistics
Matches: 197, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
38 34 0.17
40 3 0.02
43 1 0.01
44 3 0.02
45 4 0.02
46 149 0.76
47 3 0.02
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (45 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTATCAGGT
Found at i:32085683 original size:38 final size:38
Alignment explanation
Indices: 32085632--32085707 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
32085622 ACATTTTATA
32085632 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
32085670 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
32085708 ATTTCATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.34
Consensus pattern (38 bp):
TCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:32087872 original size:11 final size:11
Alignment explanation
Indices: 32087856--32087907 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
32087846 TATACTAAAT
32087856 AAATAATAATA
1 AAATAATAATA
*
32087867 AAATAAT-ATT
1 AAATAATAATA
* *
32087877 AAATATCTCATA
1 AAATA-ATAATA
*
32087889 AAATATTAATA
1 AAATAATAATA
32087900 AAATAATA
1 AAATAATA
32087908 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:32093323 original size:24 final size:24
Alignment explanation
Indices: 32093272--32093366 Score: 122
Period size: 24 Copynumber: 4.0 Consensus size: 24
32093262 GCTTTATCAT
*
32093272 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
32093297 ATAACTTGGCCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32093321 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32093344 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32093367 GCACTTCCTC
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
23 23 0.38
24 27 0.44
25 11 0.18
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32093347 original size:23 final size:23
Alignment explanation
Indices: 32093293--32093365 Score: 110
Period size: 23 Copynumber: 3.1 Consensus size: 23
32093283 CCTAGCCTCT
* * *
32093293 TTTAATAACTTGGCCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32093316 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
32093340 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
32093363 TTT
1 TTT
32093366 TGCACTTCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 26 0.57
24 20 0.43
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:32093438 original size:9 final size:9
Alignment explanation
Indices: 32093424--32093480 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
32093414 ATCTCATGTG
32093424 CATATCATA
1 CATATCATA
*
32093433 CATATCATGTG
1 CATATCA--TA
32093444 CATATCATA
1 CATATCATA
* *
32093453 CATGTCATGTG
1 CATATCA--TA
32093464 CATATCATA
1 CATATCATA
32093473 CATATCAT
1 CATATCAT
32093481 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:32093440 original size:20 final size:20
Alignment explanation
Indices: 32093412--32093482 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
32093402 GCATTTATGA
*
32093412 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32093432 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
32093452 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
32093472 ACATATCATGT
1 ACATATCATGT
32093483 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:32093447 original size:11 final size:11
Alignment explanation
Indices: 32093417--32093471 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
32093407 TATGAACATC
32093417 TCATGTGCATA
1 TCATGTGCATA
*
32093428 TCA--TACATA
1 TCATGTGCATA
32093437 TCATGTGCATA
1 TCATGTGCATA
* *
32093448 TCA--TACATG
1 TCATGTGCATA
32093457 TCATGTGCATA
1 TCATGTGCATA
32093468 TCAT
1 TCAT
32093472 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:32093547 original size:25 final size:25
Alignment explanation
Indices: 32093519--32093566 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32093509 ATATATAAAC
* * *
32093519 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
32093544 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
32093567 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:32096545 original size:30 final size:30
Alignment explanation
Indices: 32096506--32096562 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
32096496 TAGGCACTTT
*
32096506 CATATGGGTAAACCACACACCCGTGTGATA
1 CATACGGGTAAACCACACACCCGTGTGATA
**
32096536 CATACGGGTAGGCCACACACCCGTGTG
1 CATACGGGTAAACCACACACCCGTGTG
32096563 TCATGGCCGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.18
Consensus pattern (30 bp):
CATACGGGTAAACCACACACCCGTGTGATA
Found at i:32097166 original size:20 final size:20
Alignment explanation
Indices: 32097141--32097183 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
32097131 AGGACGACAT
32097141 AAATCTACCGGATTAGAGTC
1 AAATCTACCGGATTAGAGTC
32097161 AAATCTACCGGATTAGAGTC
1 AAATCTACCGGATTAGAGTC
32097181 AAA
1 AAA
32097184 ATAAGGGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.19, G:0.19, T:0.23
Consensus pattern (20 bp):
AAATCTACCGGATTAGAGTC
Found at i:32103635 original size:40 final size:40
Alignment explanation
Indices: 32103580--32103743 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
32103570 TGAATGATAC
* *
32103580 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
32103620 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
32103660 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * *
32103700 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
32103740 CCGG
1 CCGG
32103744 ATAAATTCCG
Statistics
Matches: 103, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 1 0.01
40 100 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:32116060 original size:2 final size:2
Alignment explanation
Indices: 32116053--32116094 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
32116043 ATGTGAGGCT
32116053 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32116095 AATTTCTTGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:32116508 original size:20 final size:20
Alignment explanation
Indices: 32116483--32116523 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32116473 TTGATGCTCA
*
32116483 AAGTAAGCTACTAGTGAATT
1 AAGTAAGCCACTAGTGAATT
*
32116503 AAGTAAGCCACTTGTGAATT
1 AAGTAAGCCACTAGTGAATT
32116523 A
1 A
32116524 TGTTGAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (20 bp):
AAGTAAGCCACTAGTGAATT
Found at i:32120814 original size:41 final size:41
Alignment explanation
Indices: 32120769--32120886 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32120759 TGAAAGATAA
32120769 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32120810 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32120840 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32120881 ATGTAG
1 ATGTAG
32120887 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32120825 original size:71 final size:71
Alignment explanation
Indices: 32120737--32120900 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32120727 GAGATGTATC
32120737 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32120802 AGGACA
66 AGGACA
32120808 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32120873 AGGACA
66 AGGACA
32120879 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32120901 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32128414 original size:69 final size:71
Alignment explanation
Indices: 32128291--32128452 Score: 310
Period size: 69 Copynumber: 2.3 Consensus size: 71
32128281 GAGATGTATC
32128291 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32128356 AGGACA
66 AGGACA
32128362 CCATGTAGACAAGAGAGCTACGTG-AA-ATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32128425 AGGACA
66 AGGACA
32128431 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32128453 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 65 0.71
70 2 0.02
71 24 0.26
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32130783 original size:40 final size:40
Alignment explanation
Indices: 32130698--32130848 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
32130688 AATTGAATGA
* * *
32130698 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
32130738 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
32130779 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
32130818 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
32130849 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:32130862 original size:40 final size:40
Alignment explanation
Indices: 32130734--32130864 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
32130724 TATGCTGGAA
* * *
32130734 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
32130774 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
32130814 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
32130854 ATTATATCCGG
1 ATTATATCCGG
32130865 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:32140960 original size:35 final size:35
Alignment explanation
Indices: 32140921--32140993 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
32140911 TATGTATGAC
32140921 TATGCTAAACCTTCTTCAATAGGAACTGAGTCTAG
1 TATGCTAAACCTTCTTCAATAGGAACTGAGTCTAG
32140956 TATGCTAAACCTTCTTCAATAGGAACTGAGTCTAG
1 TATGCTAAACCTTCTTCAATAGGAACTGAGTCTAG
32140991 TAT
1 TAT
32140994 AGTTAGACCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (35 bp):
TATGCTAAACCTTCTTCAATAGGAACTGAGTCTAG
Found at i:32144707 original size:41 final size:41
Alignment explanation
Indices: 32144650--32144731 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
32144640 TATGGTGCTG
32144650 AGTGCACATCATGTGTACAAGAGAGCTACGAGACACTATGT
1 AGTGCACATCATGTGTACAAGAGAGCTACGAGACACTATGT
*
32144691 AGTGCACATCATGTGTACAAGAGAGCTACGAGATACTATGT
1 AGTGCACATCATGTGTACAAGAGAGCTACGAGACACTATGT
32144732 TGTAGCTAGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (41 bp):
AGTGCACATCATGTGTACAAGAGAGCTACGAGACACTATGT
Found at i:32155676 original size:14 final size:16
Alignment explanation
Indices: 32155646--32155678 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
32155636 CACCCCATGC
32155646 AATGTAACATAATATA
1 AATGTAACATAATATA
32155662 AATGT-ACAT-ATATA
1 AATGTAACATAATATA
32155676 AAT
1 AAT
32155679 AAGATGGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (16 bp):
AATGTAACATAATATA
Found at i:32169267 original size:40 final size:40
Alignment explanation
Indices: 32169210--32169393 Score: 191
Period size: 40 Copynumber: 4.7 Consensus size: 40
32169200 TCGAATGATG
* *
32169210 TCCGGGCTAAGTACCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTACCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
32169250 TCCGGACTAAG-ATCCGAAGGCATTTGTACGAGTTACTAAT
1 TCCGGGCTAAGTA-CCGAAGGCATTTGTGCGAGTTACTAAA
* *
32169290 TCCGTGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTACCGAAGGCATTTGTGCGAGTTACTAAA
* *
32169328 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTACCGAAGGCATTTGTGCGAGTTACTA-AA
* *
32169369 -CCGAGCTATGT-CTCGAAGGCATTTG
1 TCCGGGCTAAGTAC-CGAAGGCATTTG
32169394 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 24 0.20
39 21 0.17
40 70 0.57
41 8 0.07
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTACCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32177165 original size:27 final size:26
Alignment explanation
Indices: 32177135--32177193 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
32177125 CGTGGGCCAA
* *
32177135 AGCCCATTACA-ACATCATTTGGGTCGT
1 AGCCCATAACAGA-ATCAATTGGG-CGT
*
32177162 AGCCCATAACAGAATCAATTGGGCTT
1 AGCCCATAACAGAATCAATTGGGCGT
32177188 AGCCCA
1 AGCCCA
32177194 AACCAATAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.29
27 19 0.68
28 1 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.24
Consensus pattern (26 bp):
AGCCCATAACAGAATCAATTGGGCGT
Found at i:32177822 original size:41 final size:41
Alignment explanation
Indices: 32177763--32177842 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
32177753 AAAGCCACCA
*
32177763 GTGGATCCACGGTCGTCAAGCAATCAAGCGATCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCAAGCGATCCTCAATCG
* *
32177804 GTGGATCCACGGTTGTCAAGCAACCATGCGATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCAAGCGATCCTCAAT
32177843 TTCTTCCTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCAAGCGATCCTCAATCG
Found at i:32178196 original size:27 final size:27
Alignment explanation
Indices: 32178163--32178396 Score: 171
Period size: 27 Copynumber: 8.7 Consensus size: 27
32178153 TTTCAAAGTC
**
32178163 AAGGGTATTTCTGTAATTTTGTAAATT
1 AAGGGTATTTCTGTAATTTTACAAATT
* * *
32178190 AAGGGTATTTCTATAATTTTCCAAATC
1 AAGGGTATTTCTGTAATTTTACAAATT
*
32178217 AAGGGTATTTC-GATAATTTT-CGAAATC
1 AAGGGTATTTCTG-TAATTTTAC-AAATT
*
32178244 AGGGGTATTT-TGGTAATTTTACAAA-T
1 AAGGGTATTTCT-GTAATTTTACAAATT
*
32178270 AGAGGGTATTT-TAGTAATTTTACAAGTT
1 A-AGGGTATTTCT-GTAATTTTACAAATT
* *
32178298 AAGGGTATTTCGGTAATTTTACAAGTT
1 AAGGGTATTTCTGTAATTTTACAAATT
* * * *
32178325 GAGGG-ATTTCAGTAATTTCA-AAAAT
1 AAGGGTATTTCTGTAATTTTACAAATT
* * *
32178350 CAGCAGTATTT-TGGTAATTTTACAAATC
1 AAG-GGTATTTCT-GTAATTTTACAAATT
* *
32178378 AGGGGTATTT-AGTAATTTT
1 AAGGGTATTTCTGTAATTTT
32178397 GTAAACCAAG
Statistics
Matches: 169, Mismatches: 26, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
25 5 0.03
26 24 0.14
27 132 0.78
28 8 0.05
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTCTGTAATTTTACAAATT
Found at i:32178234 original size:54 final size:52
Alignment explanation
Indices: 32178102--32178421 Score: 176
Period size: 54 Copynumber: 6.0 Consensus size: 52
32178092 GGTAAATCTA
* * ** * * *
32178102 CAAACCAAGAGTATTTCGATAATTTTGGAAGCCAATGGTATTTATGCAATATTT
1 CAAATCAAGGGTATTTCGATAATTTT-GAAATCAAGGGTATTTCTGTAAT-TTT
* *
32178156 CAAAGTCAAGGGTATTTCTG-TAATTTTGTAAATTAAGGGTATTTCTATAATTTT
1 CAAA-TCAAGGGTATTTC-GATAATTTTG-AAATCAAGGGTATTTCTGTAATTTT
*
32178210 CCAAATCAAGGGTATTTCGATAATTTTCGAAATCAGGGGTATTT-TGGTAATTTT
1 -CAAATCAAGGGTATTTCGATAATTTT-GAAATCAAGGGTATTTCT-GTAATTTT
* * *
32178264 ACAAAT-AGAGGGTATTT-TAGTAATTTT-ACAAGTTAAGGGTATTTCGGTAATTTT
1 -CAAATCA-AGGGTATTTCGA-TAATTTTGA-AA-TCAAGGGTATTTCTGTAATTTT
* ** ** *
32178318 ACAAGTTGAGGG-ATTTC-AGTAATTTCAAAAATC-AGCAGTATTT-TGGTAATTTT
1 -CAAATCAAGGGTATTTCGA-TAATTT-TGAAATCAAG-GGTATTTCT-GTAATTTT
* * *
32178371 ACAAATCAGGGGTATTTAG-TAATTTTGTAAACCAAGGGTATTT-TAGTAATT
1 -CAAATCAAGGGTATTTCGATAATTTTG-AAATCAAGGGTATTTCT-GTAATT
32178422 CTACCCTACA
Statistics
Matches: 211, Mismatches: 33, Indels: 45
0.73 0.11 0.16
Matches are distributed among these distances:
52 3 0.01
53 64 0.30
54 104 0.49
55 39 0.18
56 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (52 bp):
CAAATCAAGGGTATTTCGATAATTTTGAAATCAAGGGTATTTCTGTAATTTT
Found at i:32178277 original size:81 final size:81
Alignment explanation
Indices: 32178165--32178421 Score: 210
Period size: 81 Copynumber: 3.2 Consensus size: 81
32178155 TCAAAGTCAA
** *
32178165 GGGTATTTCTGTAATTTTGTAAATTAAGGGTATTTCTA-TAATTTTCCAAATCAAGGGTATTTCG
1 GGGTATTTCTGTAATTTTACAAATTAAGGGTATTT-TAGTAATTTTACAAATCAAGGGTATTTCG
32178229 ATAATTTTCGAAATCAG
65 ATAATTTTCGAAATCAG
* *
32178246 GGGTATTT-TGGTAATTTTACAAA-TAGAGGGTATTTTAGTAATTTTACAAGTTAAGGGTATTTC
1 GGGTATTTCT-GTAATTTTACAAATTA-AGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTC
* * *
32178309 GGTAATTTTAC-AAGT-TG
64 GATAATTTT-CGAAATCAG
* * * * * * * *
32178326 AGGG-ATTTCAGTAATTTCA-AAAATCAGCAGTATTTTGGTAATTTTACAAATCAGGGGTATTTA
1 -GGGTATTTCTGTAATTTTACAAATTAAG-GGTATTTTAGTAATTTTACAAATCAAGGGTATTTC
* *
32178389 G-TAATTTT-GTAAACCAA
64 GATAATTTTCG-AAATCAG
32178406 GGGTATTT-TAGTAATT
1 GGGTATTTCT-GTAATT
32178422 CTACCCTACA
Statistics
Matches: 141, Mismatches: 22, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
79 17 0.12
80 59 0.42
81 64 0.45
82 1 0.01
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (81 bp):
GGGTATTTCTGTAATTTTACAAATTAAGGGTATTTTAGTAATTTTACAAATCAAGGGTATTTCGA
TAATTTTCGAAATCAG
Found at i:32178511 original size:54 final size:54
Alignment explanation
Indices: 32178410--32178513 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
32178400 AACCAAGGGT
* * * *
32178410 ATTTTAGTAATTCTACCCTACAGGAGCATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGAGCATTTAAGTAATACTAGCCTACAGGGGC
* * *
32178464 ATTTCAGTAATTCTACCCTACAGGGGTATTTAAGTAATAGTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAGGAGCATTTAAGTAATACTAGCCTACAG
32178514 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (54 bp):
ATTTCAGTAATTCTACCCTACAGGAGCATTTAAGTAATACTAGCCTACAGGGGC
Found at i:32178513 original size:27 final size:27
Alignment explanation
Indices: 32178410--32178501 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
32178400 AACCAAGGGT
* *
32178410 ATTTTAGTAATTCTACCCTACAGGAGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
32178437 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
32178464 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
32178491 ATTTAAGTAAT
1 ATTTCAGTAAT
32178502 AGTAGCCTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:32186896 original size:40 final size:40
Alignment explanation
Indices: 32186852--32186997 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
32186842 ATAACCACAA
* * * *
32186852 GCACAATTGCCTTCGGGTCTTAACCCAGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTC
32186892 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTC
* *
32186932 GCACAAATGCCTTCGGGTCTTAGCCCAAATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCAGATATAA-CAACTC
* *
32186972 GCATAAATGCCTTCGGGACTTAGCCC
1 GCACAAATGCCTTCGGGTCTTAGCCC
32186998 GGGTATCATT
Statistics
Matches: 97, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
40 96 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCAGATATAACAACTC
Found at i:32199968 original size:41 final size:41
Alignment explanation
Indices: 32199923--32200040 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
32199913 TGAAAGATAA
32199923 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
32199964 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32199994 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
32200035 ATGTAG
1 ATGTAG
32200041 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:32199979 original size:71 final size:71
Alignment explanation
Indices: 32199891--32200054 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
32199881 GAGATGTATC
32199891 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32199956 AGGACA
66 AGGACA
32199962 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
32200027 AGGACA
66 AGGACA
32200033 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
32200055 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:32205792 original size:40 final size:40
Alignment explanation
Indices: 32205747--32205914 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
32205737 CGGAATATAA
*
32205747 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCCTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
32205787 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
32205827 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
32205867 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
32205907 CCGGATAT
1 CCGGATAT
32205915 CATTCAATTT
Statistics
Matches: 106, Mismatches: 21, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 105 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:32209033 original size:50 final size:50
Alignment explanation
Indices: 32208958--32209054 Score: 176
Period size: 50 Copynumber: 1.9 Consensus size: 50
32208948 AAGGCTTTGT
*
32208958 ATGTAACCAATCCCAACTTGAATAGCTATATTAATCACTTTGTAACAACC
1 ATGTAACCAATCCCAACTTGAATAGCTACATTAATCACTTTGTAACAACC
*
32209008 ATGTAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACA
1 ATGTAACCAATCCCAACTTGAATAGCTACATTAATCACTTTGTAACA
32209055 GCCCTTGTAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 45 1.00
ACGTcount: A:0.37, C:0.24, G:0.09, T:0.30
Consensus pattern (50 bp):
ATGTAACCAATCCCAACTTGAATAGCTACATTAATCACTTTGTAACAACC
Found at i:32210258 original size:27 final size:27
Alignment explanation
Indices: 32210227--32210302 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
32210217 AATCTCATAT
* *
32210227 CTGTAAGCTAGTATTACTGAATTGCCC
1 CTGTAAGCTAGAATTACTGAAATGCCC
* *
32210254 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAAGCTAGAATTACTGAAATGCCC
* * *
32210281 TTGTAGGGTAGAATTACT-AAAT
1 CTGTAAGCTAGAATTACTGAAAT
32210303 ACCCTTGGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 4 0.09
27 40 0.91
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGTAAGCTAGAATTACTGAAATGCCC
Found at i:32210302 original size:26 final size:27
Alignment explanation
Indices: 32210239--32210309 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
32210229 GTAAGCTAGT
* *
32210239 ATTACTGAATTGCCCCTGTAGGGTAGA
1 ATTACTGAAATGCCCTTGTAGGGTAGA
32210266 ATTACTGAAATGCCCTTGTAGGGTAGA
1 ATTACTGAAATGCCCTTGTAGGGTAGA
*
32210293 ATTACT-AAATACCCTTG
1 ATTACTGAAATGCCCTTG
32210310 GTTTACAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 10 0.24
27 31 0.76
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31
Consensus pattern (27 bp):
ATTACTGAAATGCCCTTGTAGGGTAGA
Found at i:32210340 original size:27 final size:26
Alignment explanation
Indices: 32210316--32210538 Score: 205
Period size: 27 Copynumber: 8.3 Consensus size: 26
32210306 CTTGGTTTAC
*
32210316 AAAATTACCAAAATATCCCTAGTTTGT
1 AAAATTACCAAAATA-CCCTAATTTGT
*
32210343 AAAATTACCAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCC-TAATTTGT
* * ** *
32210370 GAAATTACCGAAATACCCTCAACCTAT
1 AAAATTACCAAAATACCCT-AATTTGT
* * *
32210397 AAAATTACCGAAATACCCTCGACTTGT
1 AAAATTACCAAAATACCCT-AATTTGT
*
32210424 AAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCT-AATTTGT
*
32210451 AAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCAAAATA-CCCTAATTTGT
* * *
32210478 AAAATTACCGAAATACCCTTAAATTGG
1 AAAATTACCAAAATACCC-TAATTTGT
**
32210505 AAAATTA-CAGAAATACCCCTAATTTAC
1 AAAATTACCA-AAATA-CCCTAATTTGT
32210532 AAAATTA
1 AAAATTA
32210539 TAGAAATACC
Statistics
Matches: 170, Mismatches: 20, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
26 8 0.05
27 155 0.91
28 7 0.04
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAATTTGT
Found at i:32210375 original size:54 final size:54
Alignment explanation
Indices: 32210299--32210550 Score: 240
Period size: 54 Copynumber: 4.7 Consensus size: 54
32210289 TAGAATTACT
* ** * *
32210299 AAATACCCTTGGTTTACAAAATTACCAAAATATCCCT-AGTTTGTAAAATTACCA
1 AAATACCCTTAGTTTGTAAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCA
* ** * *
32210353 AAATACCCTTAGTTTGTGAAATTACCGAAATACCCTCAACCTATAAAATTACCG
1 AAATACCCTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
* *
32210407 AAATACCC-TCGACTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTAG-TTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
* * * * * *
32210461 AAATACCCCTAATTTGGAAAATTACCGAAATACCCTTAAATTGGAAAATTA-CA
1 AAATACCCTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
* * ** **
32210514 GAAATACCCCTAATTTACAAAATTATAGAAATACCCT
1 -AAATACCCTTAGTTTGTAAAATTACCGAAATACCCT
32210551 TGACTTTCAA
Statistics
Matches: 166, Mismatches: 28, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
53 8 0.05
54 157 0.95
55 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (54 bp):
AAATACCCTTAGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
Found at i:32210482 original size:81 final size:81
Alignment explanation
Indices: 32210316--32210522 Score: 231
Period size: 81 Copynumber: 2.6 Consensus size: 81
32210306 CTTGGTTTAC
* * * * * * *
32210316 AAAATTACCAAAATATCCCTAG-TTTGTAAAATTACCAAAATACCCTTAGTTTGTGAAATTACCG
1 AAAATTACCGAAATA-CCCTAGAATTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
*
32210380 AAATACCCTCAACCTAT
65 AAATACCCTCAACCTAG
* *
32210397 AAAATTACCGAAATACCCTCGACTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
1 AAAATTACCGAAATACCCTAGAATTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
** *
32210462 AATACCC-CTAATTTGG
66 AATACCCTC-AACCTAG
* *
32210478 AAAATTACCGAAATACCCTTA-AATTGGAAAATTACAGAAATACCC
1 AAAATTACCGAAATACCC-TAGAATTGTAAAATTACCGAAATACCC
32210523 CTAATTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
80 6 0.06
81 100 0.93
82 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (81 bp):
AAAATTACCGAAATACCCTAGAATTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAA
AATACCCTCAACCTAG
Found at i:32210613 original size:27 final size:27
Alignment explanation
Indices: 32210299--32210607 Score: 203
Period size: 27 Copynumber: 11.4 Consensus size: 27
32210289 TAGAATTACT
** *
32210299 AAATACCCTTGGTTT-ACAAAATTACCA
1 AAATACCCTTAATTTGA-AAAATTACCG
* * *
32210326 AAATATCCC-TAGTTTGTAAAATTACCA
1 AAATA-CCCTTAATTTGAAAAATTACCG
* **
32210353 AAATACCCTTAGTTTGTGAAATTACCG
1 AAATACCCTTAATTTGAAAAATTACCG
* **
32210380 AAATACCCTCAACCT-ATAAAATTACCG
1 AAATACCCTTAATTTGA-AAAATTACCG
** * *
32210407 AAATACCCTCGACTTGTAAAATTACCG
1 AAATACCCTTAATTTGAAAAATTACCG
* * *
32210434 AAATACCCTCAATTTGTAAAATTACCA
1 AAATACCCTTAATTTGAAAAATTACCG
* *
32210461 AAATACCCCTAATTTGGAAAATTACCG
1 AAATACCCTTAATTTGAAAAATTACCG
* * *
32210488 AAATACCCTTAAATTGGAAAATTACAG
1 AAATACCCTTAATTTGAAAAATTACCG
* **
32210515 AAATACCCCTAATTT-ACAAAATTATAG
1 AAATACCCTTAATTTGA-AAAATTACCG
* * **
32210542 AAATACCCTTGACTTTCAAAAAATTATAG
1 AAATACCCTT-AATTT-GAAAAATTACCG
* * * ** *
32210571 ATATGCCATTGGTTTGAAAAATTACTG
1 AAATACCCTTAATTTGAAAAATTACCG
32210598 AAATACCCTT
1 AAATACCCTT
32210608 GGTTTGTAGA
Statistics
Matches: 233, Mismatches: 40, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.01
27 202 0.87
28 10 0.04
29 17 0.07
30 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATACCCTTAATTTGAAAAATTACCG
Found at i:32210696 original size:27 final size:27
Alignment explanation
Indices: 32210666--32210725 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
32210656 ACCCCTAGCA
32210666 GGTAAAAAGACCATAA-TGCCCCTGTAG
1 GGTAAAAAGACCATAATTG-CCCTGTAG
** * *
32210693 GGTAAAGTGACCGTAATTGCCCTGTAT
1 GGTAAAAAGACCATAATTGCCCTGTAG
32210720 GGTAAA
1 GGTAAA
32210726 TGACGATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (27 bp):
GGTAAAAAGACCATAATTGCCCTGTAG
Found at i:32211155 original size:27 final size:27
Alignment explanation
Indices: 32211116--32211174 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
32211106 ACTGCATTGT
*
32211116 TACTGCATTGGGC-TAGGCCTACACTG
1 TACTGCATAGGGCTTAGGCCTACACTG
* *
32211142 CTACTGTATAGGGCTTAGGCCTAGACTG
1 -TACTGCATAGGGCTTAGGCCTACACTG
32211170 TACTG
1 TACTG
32211175 ATACTGAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (27 bp):
TACTGCATAGGGCTTAGGCCTACACTG
Found at i:32211186 original size:33 final size:33
Alignment explanation
Indices: 32211138--32211213 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
32211128 CTAGGCCTAC
* * *
32211138 ACTGCTACTGTATAGGGCTTAGGCCTAGACTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
*
32211171 ACTGATACTGAATAGGGCTTTGGCCCAGACTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
32211204 ACTGATACTG
1 ACTGATACTG
32211214 TGTTATTCAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
Found at i:32211511 original size:17 final size:18
Alignment explanation
Indices: 32211472--32211520 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
32211462 GTCTAGGAAG
*
32211472 ACACGAGTTTTCAAAATA
1 ACACGAGTTTTCAAAAGA
* *
32211490 GCACGA-TTTTCTAAAGA
1 ACACGAGTTTTCAAAAGA
*
32211507 ACACGAGCTTTCAA
1 ACACGAGTTTTCAA
32211521 CAACAAAGTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (18 bp):
ACACGAGTTTTCAAAAGA
Found at i:32218163 original size:9 final size:9
Alignment explanation
Indices: 32218136--32218172 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
32218126 ACCTACAAAC
32218136 AAACACATT
1 AAACACATT
*
32218145 AAAACTCATT
1 -AAACACATT
32218155 AAACACATT
1 AAACACATT
32218164 AAACACATT
1 AAACACATT
32218173 TAGACACATA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (9 bp):
AAACACATT
Found at i:32218181 original size:19 final size:19
Alignment explanation
Indices: 32218136--32218172 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32218126 ACCTACAAAC
*
32218136 AAACACATTAAAACTCATT
1 AAACACATTAAAACACATT
32218155 AAACACATT-AAACACATT
1 AAACACATTAAAACACATT
32218173 TAGACACATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.54, C:0.22, G:0.00, T:0.24
Consensus pattern (19 bp):
AAACACATTAAAACACATT
Found at i:32218297 original size:53 final size:54
Alignment explanation
Indices: 32218234--32218361 Score: 222
Period size: 54 Copynumber: 2.4 Consensus size: 54
32218224 CAACAATAAA
* * *
32218234 TTATTTCAGCAACTAAATTAACTAAGATGAACTTCA-TAACTAAGATGAGTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTTAATTAACTAAGATGAGTAAT
32218287 TTATTCCAGCAACTTAATTAACTAAGATGAACTTAATTAACTAAGATGAGTAAT
1 TTATTCCAGCAACTTAATTAACTAAGATGAACTTAATTAACTAAGATGAGTAAT
32218341 TTATTCCAGCAACTTAATTAA
1 TTATTCCAGCAACTTAATTAA
32218362 TTAAACTAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 33 0.46
54 38 0.54
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (54 bp):
TTATTCCAGCAACTTAATTAACTAAGATGAACTTAATTAACTAAGATGAGTAAT
Found at i:32218321 original size:19 final size:19
Alignment explanation
Indices: 32218297--32218335 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32218287 TTATTCCAGC
32218297 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
32218316 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
32218335 A
1 A
32218336 GTAATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:32222759 original size:119 final size:118
Alignment explanation
Indices: 32222591--32222943 Score: 391
Period size: 112 Copynumber: 3.0 Consensus size: 118
32222581 ATCGAGGATG
* ** * * *
32222591 TATTGGTACGTGTAGATAAATTTATCTTCCCTGCTGATTTTGTTATCTTACACTTTGAAGTAGAC
1 TATTAGTACGTGTAGATAAATGAATCTTTCCTCCTGATTTTGTTATCTTACACTTTGAAGCAGAC
32222656 AAAGAAGTGTCAATTATCTTAGGAAGACCATTCTTAGAAACCGGAAGGACCCT
66 AAAGAAGTGTCAATTATCTTAGGAAGACCATTCTTAGAAACCGGAAGGACCCT
* *
32222709 TATTAGTACGTGTAGATAAA-GAAGTGTTATCTTCCTGATTTTGTTATCTTACACTTTGAAGCAG
1 TATTAGTACGTGTAGATAAATGAA-TCTT-TCCTCCTGATTTTGTTATCTTACACTTTGAAGCAG
* * * ***** * *
32222773 ACAAAGAAGTGTCAA-T-CCTTAGCACA-TCCAAAAGGAAAAATC--AAGGA---T
64 ACAAAGAAGTGTCAATTATCTTAGGA-AGACCATTCTTAGAAACCGGAAGGACCCT
* ** * *
32222821 GTATTGGTACGTGTAGATAAATTTATCTTTCCTGCTGATTTTGTTATCTTACACTTTGAAACAGA
1 -TATTAGTACGTGTAGATAAATGAATCTTTCCTCCTGATTTTGTTATCTTACACTTTGAAGCAGA
*
32222886 CAAAGAAGTGTCAATTATCTTAGGAAGACCATTCTTAGCAACCGGAAGGACCCT
65 CAAAGAAGTGTCAATTATCTTAGGAAGACCATTCTTAGAAACCGGAAGGACCCT
32222940 TATT
1 TATT
32222944 GATGTGCAGA
Statistics
Matches: 186, Mismatches: 36, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
112 48 0.26
113 24 0.13
114 14 0.08
115 5 0.03
116 5 0.03
117 15 0.08
118 28 0.15
119 47 0.25
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (118 bp):
TATTAGTACGTGTAGATAAATGAATCTTTCCTCCTGATTTTGTTATCTTACACTTTGAAGCAGAC
AAAGAAGTGTCAATTATCTTAGGAAGACCATTCTTAGAAACCGGAAGGACCCT
Found at i:32222888 original size:112 final size:112
Alignment explanation
Indices: 32222553--32222900 Score: 405
Period size: 112 Copynumber: 3.0 Consensus size: 112
32222543 AATTAGGAGA
*
32222553 TCAATCCTTAGCACATCCAAAAGGAAAAATCGAGGATGTATTGGTACGTGTAGATAAATTTATCT
1 TCAATCCTTAGCACATCCAAAAGGAAAAATCAAGGATGTATTGGTACGTGTAGATAAATTTATCT
* *
32222618 TCCCTGCTGATTTTGTTATCTTACACTTTGAAGTAGACAAAGAAGTG
66 TTCCTGCTGATTTTGTTATCTTACACTTTGAAGCAGACAAAGAAGTG
* * * ***** * * *
32222665 TCAATTATCTTAGGA-AGACCATTCTTAGAAACCGGAAGGACCCT-TATTAGTACGTGTAGATAA
1 TCAA-T-CCTTAGCACA-TCCAAAAGGAAAAATC--AAGGA---TGTATTGGTACGTGTAGATAA
** * * *
32222728 A-GAAGTGTTATCTTCCTGATTTTGTTATCTTACACTTTGAAGCAGACAAAGAAGTG
58 ATTTA-TCTT-TCCTGCTGATTTTGTTATCTTACACTTTGAAGCAGACAAAGAAGTG
32222784 TCAATCCTTAGCACATCCAAAAGGAAAAATCAAGGATGTATTGGTACGTGTAGATAAATTTATCT
1 TCAATCCTTAGCACATCCAAAAGGAAAAATCAAGGATGTATTGGTACGTGTAGATAAATTTATCT
*
32222849 TTCCTGCTGATTTTGTTATCTTACACTTTGAAACAGACAAAGAAGTG
66 TTCCTGCTGATTTTGTTATCTTACACTTTGAAGCAGACAAAGAAGTG
32222896 TCAAT
1 TCAAT
32222901 TATCTTAGGA
Statistics
Matches: 187, Mismatches: 36, Indels: 26
0.75 0.14 0.10
Matches are distributed among these distances:
112 53 0.28
113 24 0.13
114 15 0.08
115 5 0.03
116 4 0.02
117 15 0.08
118 24 0.13
119 47 0.25
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (112 bp):
TCAATCCTTAGCACATCCAAAAGGAAAAATCAAGGATGTATTGGTACGTGTAGATAAATTTATCT
TTCCTGCTGATTTTGTTATCTTACACTTTGAAGCAGACAAAGAAGTG
Found at i:32224752 original size:21 final size:21
Alignment explanation
Indices: 32224728--32224778 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
32224718 GGGTACTTCT
*
32224728 AATTTAAGAGTTTGATTTAGA
1 AATTCAAGAGTTTGATTTAGA
32224749 AATTCAAGAGTTTGATTTAGA
1 AATTCAAGAGTTTGATTTAGA
32224770 AATTCAAGA
1 AATTCAAGA
32224779 TCAAAAGGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.41, C:0.04, G:0.18, T:0.37
Consensus pattern (21 bp):
AATTCAAGAGTTTGATTTAGA
Found at i:32238709 original size:15 final size:15
Alignment explanation
Indices: 32238689--32238718 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32238679 ATCAAATTAA
32238689 ATTTATCAATATAAT
1 ATTTATCAATATAAT
32238704 ATTTATCAATATAAT
1 ATTTATCAATATAAT
32238719 TGTAATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTATCAATATAAT
Found at i:32241373 original size:422 final size:422
Alignment explanation
Indices: 32240589--32241436 Score: 1615
Period size: 422 Copynumber: 2.0 Consensus size: 422
32240579 TGGAACTAAA
*
32240589 TATATATATTTTACACCTGCAACATGATACTACTGTTAACAAATAGATAATTTTAAGCTTATTTT
1 TATATATATTTTACACCTGCAACATGATACTACTGTTAAAAAATAGATAATTTTAAGCTTATTTT
32240654 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
66 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
* * *
32240719 GATGGGGGACAATTAACTTTGAGGTATGTACAAGGAATGCTGCAAACATAATAACCAAATAACAG
131 GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
32240784 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
196 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
32240849 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
261 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
32240914 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
326 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
32240979 TATAGCCACAGTGGTATGACACAGATTACCTT
391 TATAGCCACAGTGGTATGACACAGATTACCTT
*
32241011 TATATATATTTTACACGTGCAACATGATACTACTGTTAAAAAATAGATAATTTTAAGCTTATTTT
1 TATATATATTTTACACCTGCAACATGATACTACTGTTAAAAAATAGATAATTTTAAGCTTATTTT
*
32241076 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTGAGGCACAAAATACAGTTCCAG
66 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
32241141 GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
131 GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
**
32241206 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTATGACACGGAT
196 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
32241271 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
261 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
32241336 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
326 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
*
32241401 TATAGCCACAGTGGTATGACGCAGATTACCTT
391 TATAGCCACAGTGGTATGACACAGATTACCTT
32241433 TATA
1 TATA
32241437 AATACTCCCA
Statistics
Matches: 417, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
422 417 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (422 bp):
TATATATATTTTACACCTGCAACATGATACTACTGTTAAAAAATAGATAATTTTAAGCTTATTTT
TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
TATAGCCACAGTGGTATGACACAGATTACCTT
Found at i:32252095 original size:20 final size:18
Alignment explanation
Indices: 32252051--32252094 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
32252041 TCTAATAATG
32252051 TTCTCTCTATTAAGGGCC
1 TTCTCTCTATTAAGGGCC
32252069 TTCTCTCTATTAAGGGCC
1 TTCTCTCTATTAAGGGCC
32252087 TTCTCTCT
1 TTCTCTCT
32252095 CGTCATACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.14, C:0.30, G:0.14, T:0.43
Consensus pattern (18 bp):
TTCTCTCTATTAAGGGCC
Found at i:32254780 original size:64 final size:64
Alignment explanation
Indices: 32254707--32254917 Score: 151
Period size: 64 Copynumber: 3.2 Consensus size: 64
32254697 CTGGACCAGA
*
32254707 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
* * * *** * ** *
32254771 GCCCATTTCAAAATAC-ATGCAACATCAGTAAACATATGCAAGCCC--ATTTGGGTAACAGTGAT
1 GCCCATTTCAGATTACAAT--AA-A-CTG-GGCCTTA-GC---CCCTTATTCAGATAACA--G-T
* *
32254833 ACTGGGCCAGA-
54 A-TGGCCCATAG
*
32254844 GCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
1 GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
32254908 GCCCATTTCA
1 GCCCATTTCA
32254918 AAATACATGC
Statistics
Matches: 103, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
63 9 0.09
64 24 0.23
65 6 0.06
66 1 0.01
67 11 0.11
68 5 0.05
69 5 0.05
70 11 0.11
71 1 0.01
72 6 0.06
73 15 0.15
74 9 0.09
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
GCCCATTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTATGGCCCATAG
Found at i:32254919 original size:137 final size:137
Alignment explanation
Indices: 32254673--32254959 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
32254663 TATTGGGCCT
** *
32254673 AAGCCCATTCAGGTAACAGTGGTACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
32254738 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
32254803 CATATGC
131 CATATGC
*
32254810 AAGCCCATTTGGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTGGGTAACAGTGATACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
32254875 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
66 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
32254940 CATATGC
131 CATATGC
32254947 AAGCCCATTTGGG
1 AAGCCCATTTGGG
32254960 GAGACTACTC
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (137 bp):
AAGCCCATTTGGGTAACAGTGATACTGGACCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAA
CATATGC
Found at i:32255567 original size:8 final size:8
Alignment explanation
Indices: 32255535--32255570 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
32255525 AAAATACCAG
32255535 TTTTCGGC
1 TTTTCGGC
*
32255543 ATTTCGGC
1 TTTTCGGC
*
32255551 ATTTCGGC
1 TTTTCGGC
32255559 TTTTCGGC
1 TTTTCGGC
32255567 TTTT
1 TTTT
32255571 GCCGATCTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.06, C:0.22, G:0.22, T:0.50
Consensus pattern (8 bp):
TTTTCGGC
Found at i:32256780 original size:26 final size:26
Alignment explanation
Indices: 32256744--32256878 Score: 218
Period size: 26 Copynumber: 5.2 Consensus size: 26
32256734 CATGATATTC
32256744 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
32256770 TTATCATGAAACATTTA-CTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
32256795 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32256821 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* * *
32256847 TTATCATGGAGCATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
32256873 TTATCA
1 TTATCA
32256879 ATTTGTATCA
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 24 0.24
26 77 0.76
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:32256865 original size:52 final size:51
Alignment explanation
Indices: 32256744--32256878 Score: 234
Period size: 51 Copynumber: 2.6 Consensus size: 51
32256734 CATGATATTC
* *
32256744 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACTAACCCA
32256795 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTA-CTAACCCA
*
32256847 TTATCATGGAGCATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
32256879 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 41 0.51
52 39 0.49
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (51 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACTAACCCA
Found at i:32262955 original size:42 final size:42
Alignment explanation
Indices: 32262896--32262979 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
32262886 ATTGTGTGGG
32262896 GACCAAAAGAAACTATGAAATCCCAATACCCTTATCTTTTCT
1 GACCAAAAGAAACTATGAAATCCCAATACCCTTATCTTTTCT
*
32262938 GACCAAAAGAAACTATGAAATCCTAATACCCTTATCTTTTCT
1 GACCAAAAGAAACTATGAAATCCCAATACCCTTATCTTTTCT
32262980 TAGGTAAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (42 bp):
GACCAAAAGAAACTATGAAATCCCAATACCCTTATCTTTTCT
Found at i:32263983 original size:19 final size:20
Alignment explanation
Indices: 32263959--32264001 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
32263949 GATTCAGTTT
*
32263959 CAGATTTAGATTT-AGATA-G
1 CAGATTCAG-TTTCAGATATG
32263978 CAGATTCAGTTTCAGATATG
1 CAGATTCAGTTTCAGATATG
32263998 CAGA
1 CAGA
32264002 ATCCTACCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 3 0.14
19 13 0.62
20 5 0.24
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
CAGATTCAGTTTCAGATATG
Found at i:32263983 original size:31 final size:30
Alignment explanation
Indices: 32263936--32263994 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 30
32263926 ATGCACAGTC
32263936 AGATATAGATACAGATTCAGTTTCAGATTT
1 AGATATAGATACAGATTCAGTTTCAGATTT
*
32263966 AGATTTAGATAGCAGATTCAGTTTCAGAT
1 AGATATAGATA-CAGATTCAGTTTCAGAT
32263995 ATGCAGAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.36
Consensus pattern (30 bp):
AGATATAGATACAGATTCAGTTTCAGATTT
Found at i:32264488 original size:21 final size:21
Alignment explanation
Indices: 32264458--32264505 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
32264448 CCCGTGTGGC
* *
32264458 CCACATGGCCTGGCCTAGAAT
1 CCACACGGCCTGGCCCAGAAT
32264479 CCACACGGCCTGGCCCAGAAT
1 CCACACGGCCTGGCCCAGAAT
32264500 CCACAC
1 CCACAC
32264506 CCCCGTGTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.42, G:0.21, T:0.12
Consensus pattern (21 bp):
CCACACGGCCTGGCCCAGAAT
Found at i:32279357 original size:16 final size:18
Alignment explanation
Indices: 32279330--32279362 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32279320 TATAATTGAG
32279330 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
32279347 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
32279363 TTTCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:32281545 original size:17 final size:17
Alignment explanation
Indices: 32281502--32281545 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
32281492 AATTCGTTTG
32281502 TTTATTTCTTGTTATTTA
1 TTTATTT-TTGTTATTTA
**
32281520 TTTCCTTTTGTTATTTA
1 TTTATTTTTGTTATTTA
32281537 TTTATTTTT
1 TTTATTTTT
32281546 ATTCCTCTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.75
Consensus pattern (17 bp):
TTTATTTTTGTTATTTA
Found at i:32285116 original size:75 final size:75
Alignment explanation
Indices: 32285009--32285176 Score: 221
Period size: 75 Copynumber: 2.2 Consensus size: 75
32284999 TTTGCTTTAC
* * * * *
32285009 AGGCTTTCCAAATAACTCACCACAAAGGCTTCCCAAACAATATACCACATAGGCT-CTTCAGATA
1 AGGCTTTACAGATAACTCACCACAAAAGCTTCCCAAACAAAACACCACATAGGCTCCTT-AGATA
*
32285073 ATTCACTAAAA
65 ATTCACCAAAA
* * * *
32285084 AGGTTTTACAGATAATTCACCACAAAAGCTTCCCAAACAAAACGCCACATATGCTCCTTAGATAA
1 AGGCTTTACAGATAACTCACCACAAAAGCTTCCCAAACAAAACACCACATAGGCTCCTTAGATAA
*
32285149 TTCACCACAA
66 TTCACCAAAA
32285159 AGGCTTTACAGATAACTC
1 AGGCTTTACAGATAACTC
32285177 GCCATAAAGG
Statistics
Matches: 79, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
75 76 0.96
76 3 0.04
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.23
Consensus pattern (75 bp):
AGGCTTTACAGATAACTCACCACAAAAGCTTCCCAAACAAAACACCACATAGGCTCCTTAGATAA
TTCACCAAAA
Found at i:32285171 original size:25 final size:25
Alignment explanation
Indices: 32285009--32285173 Score: 86
Period size: 25 Copynumber: 6.6 Consensus size: 25
32284999 TTTGCTTTAC
* *
32285009 AGGCTTTCCAAATAACTCACCACAA
1 AGGCTTTCCAGATAATTCACCACAA
* * * *
32285034 AGGCTTCCCAAACAATAT-ACCACAT
1 AGGCTTTCCAGATAAT-TCACCACAA
* *
32285059 AGGCTCTT-CAGATAATTCACTAAAA
1 AGGCT-TTCCAGATAATTCACCACAA
* *
32285084 AGGTTTTACAGATAATTCACCACAA
1 AGGCTTTCCAGATAATTCACCACAA
* * * * ** * *
32285109 AAGCTTCCCAAACAAAACGCCACAT
1 AGGCTTTCCAGATAATTCACCACAA
*
32285134 ATGC--TCCTTAGATAATTCACCACAA
1 AGGCTTTCC--AGATAATTCACCACAA
*
32285159 AGGCTTTACAGATAA
1 AGGCTTTCCAGATAA
32285174 CTCGCCATAA
Statistics
Matches: 99, Mismatches: 33, Indels: 16
0.67 0.22 0.11
Matches are distributed among these distances:
23 2 0.02
24 3 0.03
25 90 0.91
26 2 0.02
27 2 0.02
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.23
Consensus pattern (25 bp):
AGGCTTTCCAGATAATTCACCACAA
Found at i:32298715 original size:17 final size:18
Alignment explanation
Indices: 32298668--32298715 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
32298658 ATTTAGTTTG
*
32298668 TTTATTTATTTATCGTTA
1 TTTATTTATTTTTCGTTA
**
32298686 TTTATTTCCTTTTC-TTA
1 TTTATTTATTTTTCGTTA
*
32298703 TTTATTTGTTTTT
1 TTTATTTATTTTT
32298716 ATTCCTCTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.73
Consensus pattern (18 bp):
TTTATTTATTTTTCGTTA
Found at i:32304918 original size:136 final size:135
Alignment explanation
Indices: 32304674--32304941 Score: 518
Period size: 136 Copynumber: 2.0 Consensus size: 135
32304664 CATAAATGCC
32304674 TATGTTTTAATTCAAGATATATCAATAAATATTATAGACTAATTGGAATTCATTCTAATAATGAT
1 TATGTTTTAATTCAAGATATATCAATAAATATTATAGACTAATTGGAATTCATTCTAATAATGAT
*
32304739 ATGATAAGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTCTGATATAAAAGACCCCCCACA
66 ATGAGAAGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTCTGATATAAAAGA-CCCCCACA
32304804 CTTGAG
130 CTTGAG
32304810 TATGTTTTAATTCAAGATATATCAATAAATATTATAGACTAATTGGAATTCATTCTAATAATGAT
1 TATGTTTTAATTCAAGATATATCAATAAATATTATAGACTAATTGGAATTCATTCTAATAATGAT
32304875 ATGAGAAGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTCTGATATAAAAGACCCCCACAC
66 ATGAGAAGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTCTGATATAAAAGACCCCCACAC
32304940 TT
131 TT
32304942 AAGATGTACA
Statistics
Matches: 131, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 11 0.08
136 120 0.92
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.32
Consensus pattern (135 bp):
TATGTTTTAATTCAAGATATATCAATAAATATTATAGACTAATTGGAATTCATTCTAATAATGAT
ATGAGAAGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTCTGATATAAAAGACCCCCACAC
TTGAG
Found at i:32306118 original size:22 final size:21
Alignment explanation
Indices: 32306090--32306130 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
32306080 ACCAGCACTT
*
32306090 CGAGGGAGAGTAGTGGAGGTGG
1 CGAGGGAGAGT-GTCGAGGTGG
32306112 CGAGGGAGAGTGTCGAGGT
1 CGAGGGAGAGTGTCGAGGT
32306131 TGTTCTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.22, C:0.07, G:0.56, T:0.15
Consensus pattern (21 bp):
CGAGGGAGAGTGTCGAGGTGG
Found at i:32308612 original size:41 final size:41
Alignment explanation
Indices: 32308554--32308701 Score: 176
Period size: 41 Copynumber: 3.6 Consensus size: 41
32308544 GAGCTTGGTC
32308554 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * *
32308595 TCGAAGGGCTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * *
32308635 CCGAAGGGCCTTCGAGCCAGTGATCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGTG--CTAATAACCGAACTTAGTT
32308676 TCGAAGGGCTTTTGAGCCAGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
32308702 GAATCGGGCT
Statistics
Matches: 90, Mismatches: 14, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
39 4 0.04
40 35 0.39
41 48 0.53
43 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:32314822 original size:36 final size:36
Alignment explanation
Indices: 32314775--32314849 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
32314765 TGTGGCACAG
* *
32314775 TCTTGAACATGCCTTTGAGTTTGTCTTGAAATAGTT
1 TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
32314811 TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
1 TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
32314847 TCT
1 TCT
32314850 AACGTGTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.43
Consensus pattern (36 bp):
TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
Found at i:32317647 original size:19 final size:19
Alignment explanation
Indices: 32317623--32317668 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
32317613 TATTAATTTA
*
32317623 TTTTCCTTTTCCTTTTC-CT
1 TTTTCCTTTT-ATTTTCTCT
32317642 TTTTCCTTTTATTTTCTCT
1 TTTTCCTTTTATTTTCTCT
32317661 TTTTCCTT
1 TTTTCCTT
32317669 CTTTTTTGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTCCTTTTATTTTCTCT
Found at i:32321128 original size:36 final size:36
Alignment explanation
Indices: 32321081--32321155 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
32321071 TTAACACATT
* *
32321081 AGAAACTATTTCAAGATAGACTCAAAGGCATGTTCA
1 AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
32321117 AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
1 AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
32321153 AGA
1 AGA
32321156 CTGTGCCACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (36 bp):
AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
Found at i:32334362 original size:34 final size:34
Alignment explanation
Indices: 32334288--32334516 Score: 153
Period size: 34 Copynumber: 6.9 Consensus size: 34
32334278 TTCTTAATAG
* * * *
32334288 AAATTAATACGGTAGCAA-TAACAAGCTTATAAC
1 AAATCAATACGGTAGCAATTATCATGCTTATAAT
* * *
32334321 GAGTCAATTCGGTAGCAATTATCATGCTTATAAT
1 AAATCAATACGGTAGCAATTATCATGCTTATAAT
* ** *
32334355 ATATCAATACGGTAGCAA-TAAAATGCTTATAAC
1 AAATCAATACGGTAGCAATTATCATGCTTATAAT
* * * *
32334388 AAATCGATACAGTAGCATTTGTCATGCTTATAAT
1 AAATCAATACGGTAGCAATTATCATGCTTATAAT
* * * * *
32334422 AGATTAGTACGGT-G-AA-TAACATGCTTATAAC
1 AAATCAATACGGTAGCAATTATCATGCTTATAAT
* * * ** *
32334453 AAGTCGATACAGTAGCGTTTATCATGTTTATAAT
1 AAATCAATACGGTAGCAATTATCATGCTTATAAT
* * * *
32334487 AGATCAATACAGTAGCAATAAACATGCTTA
1 AAATCAATACGGTAGCAATTATCATGCTTA
32334517 GCATGTATTT
Statistics
Matches: 141, Mismatches: 50, Indels: 9
0.70 0.25 0.05
Matches are distributed among these distances:
31 19 0.13
32 2 0.01
33 41 0.29
34 79 0.56
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (34 bp):
AAATCAATACGGTAGCAATTATCATGCTTATAAT
Found at i:32334463 original size:65 final size:67
Alignment explanation
Indices: 32334290--32334516 Score: 287
Period size: 67 Copynumber: 3.4 Consensus size: 67
32334280 CTTAATAGAA
* * * * * *
32334290 ATTAATACGGTAGCAATAACAAGCTTATAACGAGTCAATTCGGTAGCAATTATCATGCTTATAAT
1 ATTAATACGGTAGCAATAACATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAAT
*
32334355 AT
66 AG
* * * *
32334357 ATCAATACGGTAGCAATAAAATGCTTATAACAAATCGATACAGTAGCATTTGTCATGCTTATAAT
1 ATTAATACGGTAGCAATAACATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAAT
32334422 AG
66 AG
* * *
32334424 ATTAGTACGGT-G-AATAACATGCTTATAACAAGTCGATACAGTAGCGTTTATCATGTTTATAAT
1 ATTAATACGGTAGCAATAACATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAAT
32334487 AG
66 AG
* *
32334489 ATCAATACAGTAGCAATAAACATGCTTA
1 ATTAATACGGTAGCAAT-AACATGCTTA
32334517 GCATGTATTT
Statistics
Matches: 136, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
65 56 0.41
66 2 0.01
67 68 0.50
68 10 0.07
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (67 bp):
ATTAATACGGTAGCAATAACATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAAT
AG
Found at i:32336375 original size:3 final size:3
Alignment explanation
Indices: 32336367--32336419 Score: 88
Period size: 3 Copynumber: 17.3 Consensus size: 3
32336357 AGTATTCTCC
*
32336367 TAT TAT TAT GAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TCAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
32336416 TAT T
1 TAT T
32336420 TATGTGTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:32337860 original size:22 final size:20
Alignment explanation
Indices: 32337832--32337872 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
32337822 TATTTTTTAA
*
32337832 AATATTTCATATATATATATAT
1 AATATTT-ATAT-TAAATATAT
32337854 AATATTTATATTAAATATA
1 AATATTTATATTAAATATA
32337873 AAATGCTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (20 bp):
AATATTTATATTAAATATAT
Found at i:32340639 original size:21 final size:21
Alignment explanation
Indices: 32340610--32340653 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
32340600 TTGATAACGT
32340610 ATGTAATTATTTTGTAGATGC
1 ATGTAATTATTTTGTAGATGC
*
32340631 ATGTGATTATTTTGTAGATGC
1 ATGTAATTATTTTGTAGATGC
32340652 AT
1 AT
32340654 CTACCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.05, G:0.20, T:0.48
Consensus pattern (21 bp):
ATGTAATTATTTTGTAGATGC
Found at i:32345239 original size:17 final size:17
Alignment explanation
Indices: 32345217--32345253 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
32345207 TATTCAATTC
32345217 AATGATAGTAAATCAAG
1 AATGATAGTAAATCAAG
32345234 AATGATAGTAAATCAAG
1 AATGATAGTAAATCAAG
32345251 AAT
1 AAT
32345254 AAACAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.24
Consensus pattern (17 bp):
AATGATAGTAAATCAAG
Found at i:32346864 original size:30 final size:30
Alignment explanation
Indices: 32346828--32346890 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
32346818 CATAAAAGTG
32346828 TATAAATGATACTAAACATAACTTATACCT
1 TATAAATGATACTAAACATAACTTATACCT
32346858 TATAAATGATACTAAACATAACTTATACCT
1 TATAAATGATACTAAACATAACTTATACCT
32346888 TAT
1 TAT
32346891 GAAAGAGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.46, C:0.16, G:0.03, T:0.35
Consensus pattern (30 bp):
TATAAATGATACTAAACATAACTTATACCT
Found at i:32347555 original size:21 final size:19
Alignment explanation
Indices: 32347522--32347560 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
32347512 TGAAAAATAT
32347522 TAAATATTTTTTAAATAAA
1 TAAATATTTTTTAAATAAA
32347541 TAAATATCATTTTTAAATAA
1 TAAATAT--TTTTTAAATAA
32347561 TATTGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TAAATATTTTTTAAATAAA
Found at i:32349045 original size:2 final size:2
Alignment explanation
Indices: 32349040--32349064 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32349030 TCCAGGGTTT
32349040 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32349065 TCCTTAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32354356 original size:47 final size:47
Alignment explanation
Indices: 32354287--32354381 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
32354277 AATGTTAGCA
32354287 TAACTAATAGAATCTGTTAGTAGTTATTCTGTTAATAACAGATTGTC
1 TAACTAATAGAATCTGTTAGTAGTTATTCTGTTAATAACAGATTGTC
32354334 TAACTAATAGAATCTGTTAGTAGTTATTCTGTTAATAACAGATTGTC
1 TAACTAATAGAATCTGTTAGTAGTTATTCTGTTAATAACAGATTGTC
32354381 T
1 T
32354382 GTTAGTCGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.41
Consensus pattern (47 bp):
TAACTAATAGAATCTGTTAGTAGTTATTCTGTTAATAACAGATTGTC
Found at i:32360007 original size:17 final size:17
Alignment explanation
Indices: 32359987--32360028 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
32359977 ATTTATTTAT
32359987 ATTATAAATTTTAAAAA
1 ATTATAAATTTTAAAAA
** *
32360004 ATTATGTATTTTATAAA
1 ATTATAAATTTTAAAAA
32360021 ATTATAAA
1 ATTATAAA
32360029 AAAATAATTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (17 bp):
ATTATAAATTTTAAAAA
Found at i:32360017 original size:26 final size:27
Alignment explanation
Indices: 32359979--32360031 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32359969 AGCTAAGTAT
* *
32359979 TTATTTATATTAT-AAATTTTAAAAAA
1 TTATGTATATTATAAAATTATAAAAAA
*
32360005 TTATGTATTTTATAAAATTATAAAAAA
1 TTATGTATATTATAAAATTATAAAAAA
32360032 ATAATTTATA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
TTATGTATATTATAAAATTATAAAAAA
Found at i:32360269 original size:16 final size:16
Alignment explanation
Indices: 32360248--32360281 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32360238 ATTGGAAAGT
32360248 TTTTATAAATGTTATA
1 TTTTATAAATGTTATA
*
32360264 TTTTATAAATTTTATA
1 TTTTATAAATGTTATA
32360280 TT
1 TT
32360282 ATTTTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTATAAATGTTATA
Found at i:32364898 original size:40 final size:40
Alignment explanation
Indices: 32364845--32364969 Score: 171
Period size: 40 Copynumber: 3.1 Consensus size: 40
32364835 CGTTTGGATA
*
32364845 AAAAACGCTGCTATAGATCGAGCATTAGTGGCGCTTTTTG
1 AAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTG
* *
32364885 AAAAATGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTA
1 AAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTG
* * * *
32364925 AAAAACGCCGCTATA-AGTCAACCACTAGCGGCGCTTTTTG
1 AAAAACGCCGCTATAGA-TCGAGCATTAGTGGCGCTTTTTG
32364965 AAAAA
1 AAAAA
32364970 TACCACAAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
39 1 0.01
40 74 0.99
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (40 bp):
AAAAACGCCGCTATAGATCGAGCATTAGTGGCGCTTTTTG
Found at i:32365125 original size:39 final size:40
Alignment explanation
Indices: 32365011--32365157 Score: 163
Period size: 40 Copynumber: 3.7 Consensus size: 40
32365001 AGCTTTAGTG
* * * * *
32365011 GCATTAGCGACACTTTTTGAAAAACACCGCTACAGATTGA
1 GCATTAGCGACGCTTTTTGAAAAACGCCGCTATAGGTCGA
* *
32365051 GCATTAGCGACGCTTTCTGAAAAACGTCGCTATAGGTCGA
1 GCATTAGCGACGCTTTTTGAAAAACGCCGCTATAGGTCGA
* * *
32365091 GCATTAGCGGCGCTTCTTG-AAAACGCCGCTATAGGTCAA
1 GCATTAGCGACGCTTTTTGAAAAACGCCGCTATAGGTCGA
* *
32365130 CCATTAGCCG-TGCTTTTTGAAAAACGCC
1 GCATTAG-CGACGCTTTTTGAAAAACGCC
32365158 ACAAAAAATT
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
39 31 0.34
40 59 0.66
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (40 bp):
GCATTAGCGACGCTTTTTGAAAAACGCCGCTATAGGTCGA
Found at i:32365301 original size:114 final size:111
Alignment explanation
Indices: 32365091--32365342 Score: 283
Period size: 114 Copynumber: 2.3 Consensus size: 111
32365081 TATAGGTCGA
* * * *
32365091 GCATTAGCGGCGCTTCTT-GAAAACGCCGCTATAGGTCAACCATTAGCCGTGCTTTTTGAAAAAC
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCAACCATTAGCCGCGCTTTTTGAAAAAC
* *
32365155 GCCACAAAAAATTAAGCACAAGGCCGTCGTTTTATGTTGAGCTTTAATG
66 GCCACAAAAAATTAAGCACAACGCCATCGTTTTA---TGAGCTTTAATG
* * *
32365204 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCAACCATTAGCCGCGCTTTTTGAAAAAC
* * ** * * *
32365269 GGCGCAAAAAATTCAATTA-GACGCCATTGTTTTATGAGCTTTAGTG
66 GCCACAAAAAATT-AAGCACAACGCCATCGTTTTATGAGCTTTAATG
* * *
32365315 ACATTAGCGACACTTTTTAAAAAACGCC
1 GCATTAGCGGCGCTTTTTAAAAAACGCC
32365343 CCAAAAAAAC
Statistics
Matches: 118, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
111 36 0.31
113 17 0.14
114 62 0.53
115 3 0.03
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (111 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCAACCATTAGCCGCGCTTTTTGAAAAAC
GCCACAAAAAATTAAGCACAACGCCATCGTTTTATGAGCTTTAATG
Found at i:32365668 original size:7 final size:7
Alignment explanation
Indices: 32365652--32365763 Score: 71
Period size: 7 Copynumber: 15.7 Consensus size: 7
32365642 TATCATTTTA
*
32365652 GTTTAAG
1 GTTTATG
32365659 GTTTATG
1 GTTTATG
*
32365666 GTTTAGG
1 GTTTATG
* *
32365673 GTATATT
1 GTTTATG
*
32365680 GTTTAGG
1 GTTTATG
*
32365687 GTTTAAG
1 GTTTATG
32365694 GTTTATG
1 GTTTATG
** *
32365701 AATTACTA
1 GTTTA-TG
* *
32365709 TTTTAAG
1 GTTTATG
32365716 GTTTATG
1 GTTTATG
*
32365723 GATTATGG
1 GTTTAT-G
*
32365731 GTTTAGG
1 GTTTATG
*
32365738 GATTATG
1 GTTTATG
*
32365745 ATTTATG
1 GTTTATG
32365752 GTTTATG
1 GTTTATG
32365759 GTTTA
1 GTTTA
32365764 AGGGTTGGGG
Statistics
Matches: 76, Mismatches: 27, Indels: 4
0.71 0.25 0.04
Matches are distributed among these distances:
7 67 0.88
8 9 0.12
ACGTcount: A:0.23, C:0.01, G:0.27, T:0.49
Consensus pattern (7 bp):
GTTTATG
Found at i:32365735 original size:22 final size:22
Alignment explanation
Indices: 32365685--32365784 Score: 73
Period size: 22 Copynumber: 4.6 Consensus size: 22
32365675 ATATTGTTTA
*
32365685 GGGTTTAAGGTTTATGAATTACT
1 GGGTTTAAGGTTTATGGATTA-T
**
32365708 -ATTTTAAGGTTTATGGATTAT
1 GGGTTTAAGGTTTATGGATTAT
* *
32365729 GGGTTTAGGGATTAT-GATTTAT
1 GGGTTTAAGGTTTATGGA-TTAT
* * * *
32365751 -GGTTTATGGTTTAAGGGTT-G
1 GGGTTTAAGGTTTATGGATTAT
32365771 GGGTTTAAGGTTTA
1 GGGTTTAAGGTTTA
32365785 GGTGTTAGGG
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
21 28 0.47
22 32 0.53
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.46
Consensus pattern (22 bp):
GGGTTTAAGGTTTATGGATTAT
Found at i:32365775 original size:21 final size:22
Alignment explanation
Indices: 32365751--32365811 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
32365741 TATGATTTAT
*
32365751 GGTTTATGGTTTAAGGGTT-GG
1 GGTTTAAGGTTTAAGGGTTAGG
32365772 GGTTTAAGGTTT-AGGTGTTAGG
1 GGTTTAAGGTTTAAGG-GTTAGG
*
32365794 GG-TTAAGGGTTAAGGGTT
1 GGTTTAAGGTTTAAGGGTT
32365812 TATGTTTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.09
21 25 0.71
22 7 0.20
ACGTcount: A:0.18, C:0.00, G:0.43, T:0.39
Consensus pattern (22 bp):
GGTTTAAGGTTTAAGGGTTAGG
Found at i:32365834 original size:7 final size:7
Alignment explanation
Indices: 32365710--32365834 Score: 56
Period size: 7 Copynumber: 17.6 Consensus size: 7
32365700 GAATTACTAT
*
32365710 TTTAAGG
1 TTTAGGG
*
32365717 TTTATGG
1 TTTAGGG
*
32365724 ATTATGGG
1 TTTA-GGG
32365732 TTTAGGG
1 TTTAGGG
* * *
32365739 ATTATGA
1 TTTAGGG
*
32365746 TTTATGG
1 TTTAGGG
*
32365753 TTTATGG
1 TTTAGGG
32365760 TTTAAGGG
1 TTT-AGGG
*
32365768 -TTGGGG
1 TTTAGGG
*
32365774 TTTAAGG
1 TTTAGGG
32365781 TTTA-GG
1 TTTAGGG
32365787 TGTTAGGGG
1 T-TTA-GGG
*
32365796 TTAAGGG
1 TTTAGGG
*
32365803 TTAAGGG
1 TTTAGGG
* *
32365810 TTTATGT
1 TTTAGGG
* *
32365817 TTTATGA
1 TTTAGGG
32365824 TTTAGGG
1 TTTAGGG
32365831 TTTA
1 TTTA
32365835 AAGGATAGAG
Statistics
Matches: 92, Mismatches: 20, Indels: 12
0.74 0.16 0.10
Matches are distributed among these distances:
6 6 0.07
7 73 0.79
8 10 0.11
9 3 0.03
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:32366244 original size:20 final size:19
Alignment explanation
Indices: 32366219--32366281 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 19
32366209 TTATAACAAT
32366219 TTTTTTTTCAAATTTTGAAA
1 TTTTTTTTC-AATTTTGAAA
* **
32366239 TTTTTTGT---TTTTGTTA
1 TTTTTTTTCAATTTTGAAA
32366255 TTTTTTTTCATATTTTGAAA
1 TTTTTTTTCA-ATTTTGAAA
32366275 TTTTTTT
1 TTTTTTT
32366282 GTTTTTGTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
16 13 0.39
20 20 0.61
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.71
Consensus pattern (19 bp):
TTTTTTTTCAATTTTGAAA
Found at i:32366259 original size:17 final size:17
Alignment explanation
Indices: 32366239--32366298 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
32366229 AATTTTGAAA
32366239 TTTTTTGTTTTTGTTATT
1 TTTTTTGTTTTTGTTA-T
* **
32366257 TTTTTTCATATTTTGAAAT
1 TTTTTT-GT-TTTTGTTAT
32366276 TTTTTTGTTTTTGTTAT
1 TTTTTTGTTTTTGTTAT
32366293 TTTTTT
1 TTTTTT
32366299 TTGAGAAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 13 0.38
18 7 0.21
19 8 0.24
20 6 0.18
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.78
Consensus pattern (17 bp):
TTTTTTGTTTTTGTTAT
Found at i:32366259 original size:37 final size:38
Alignment explanation
Indices: 32366217--32366300 Score: 145
Period size: 36 Copynumber: 2.3 Consensus size: 38
32366207 AATTATAACA
32366217 ATTTTTTTTTCAAATTTTGAAA-TTTTTTGTTTTTGTT
1 ATTTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGTT
*
32366254 A-TTTTTTTTCATATTTTGAAATTTTTTTGTTTTTGTT
1 ATTTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGTT
32366291 ATTTTTTTTT
1 ATTTTTTTTT
32366301 GAGAAAATTC
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 19 0.43
37 17 0.39
38 8 0.18
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.74
Consensus pattern (38 bp):
ATTTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGTT
Found at i:32366260 original size:36 final size:37
Alignment explanation
Indices: 32366219--32366299 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 37
32366209 TTATAACAAT
32366219 TTTTTTTTCAAATTTTGAAA-TTTTTTGTTTTTGTTA
1 TTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGTTA
*
32366255 TTTTTTTTCATATTTTGAAATTTTTTTGTTTTTGTTA
1 TTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGTTA
32366292 TTTTTTTT
1 TTTTTTTT
32366300 TGAGAAAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
36 19 0.44
37 24 0.56
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (37 bp):
TTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGTTA
Done.