Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 114 of 328
Found at i:32366845 original size:30 final size:30
Alignment explanation
Indices: 32366809--32366868 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
32366799 TTGAAAAAAT
32366809 GGCTTCGCATCTTGAATATCTCTTATAATC
1 GGCTTCGCATCTTGAATATCTCTTATAATC
*
32366839 GGCTTCGCATCTTTAATATCTCTTATAATC
1 GGCTTCGCATCTTGAATATCTCTTATAATC
32366869 CCTCCTATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (30 bp):
GGCTTCGCATCTTGAATATCTCTTATAATC
Found at i:32367196 original size:24 final size:24
Alignment explanation
Indices: 32367169--32367219 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
32367159 TTGATTATGA
32367169 AGTCTTCCTATTTCACAAATACGT
1 AGTCTTCCTATTTCACAAATACGT
*
32367193 AGTCTTCCTATTTCACAGATACGT
1 AGTCTTCCTATTTCACAAATACGT
32367217 AGT
1 AGT
32367220 TTTTCCTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (24 bp):
AGTCTTCCTATTTCACAAATACGT
Found at i:32368578 original size:28 final size:28
Alignment explanation
Indices: 32368536--32368593 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
32368526 TCAGTTGAAC
*
32368536 TACGAACTCCGAGCATTCTGGTGATCAT
1 TACGAACTCCAAGCATTCTGGTGATCAT
32368564 TACGAACTCCAAGCATTCTGGTGATCAT
1 TACGAACTCCAAGCATTCTGGTGATCAT
32368592 TA
1 TA
32368594 TTTTTTCCCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (28 bp):
TACGAACTCCAAGCATTCTGGTGATCAT
Found at i:32372644 original size:19 final size:19
Alignment explanation
Indices: 32372620--32372658 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
32372610 TTTCCCCTAA
32372620 AAAATTTACCCAAATACCT
1 AAAATTTACCCAAATACCT
* *
32372639 AAAATTTCCCCAAATCCCT
1 AAAATTTACCCAAATACCT
32372658 A
1 A
32372659 GTTTTTTACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATTTACCCAAATACCT
Found at i:32377204 original size:42 final size:43
Alignment explanation
Indices: 32377158--32377267 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
32377148 AAGTGTTGTT
32377158 AAAGGTCATG-TCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCA
1 AAAGGTCATGTTCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCA
* * * * * * * **
32377200 AAAGGTTATGTTCTTTAACAGTGTTTTTGGGAAAAGTGTCGTT
1 AAAGGTCATGTTCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCA
*
32377243 AAATGTCATGTTCTTTAGCGGCGTT
1 AAAGGTCATGTTCTTTAGCGGCGTT
32377268 ATCTATAGTG
Statistics
Matches: 53, Mismatches: 14, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
42 9 0.17
43 44 0.83
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.35
Consensus pattern (43 bp):
AAAGGTCATGTTCTTTAGCGGCGTTTTTGGAAAAAGCGCCGCA
Found at i:32377254 original size:43 final size:42
Alignment explanation
Indices: 32377094--32377267 Score: 161
Period size: 42 Copynumber: 4.1 Consensus size: 42
32377084 GTCTTTAGTT
* *
32377094 CGTTTTTGGAGAAAGCGTCGTTAAAAGTAATGTCTTTAGCAG
1 CGTTTTTGGAGAAAGCGTCGTTAAAGGTCATGTCTTTAGCAG
* * * * *
32377136 CATTTGTGGAGAAAGTGTTGTTAAAGGTCATGTCTTTAGCGG
1 CGTTTTTGGAGAAAGCGTCGTTAAAGGTCATGTCTTTAGCAG
* * ** * *
32377178 CGTTTTTGGAAAAAGCGCCGCAAAAGGTTATGTTCTTTAACAG
1 CGTTTTTGGAGAAAGCGTCGTTAAAGGTCATG-TCTTTAGCAG
* * * *
32377221 TGTTTTTGG-GAAAAGTGTCGTTAAATGTCATGTTCTTTAGCGG
1 CGTTTTTGGAG-AAAGCGTCGTTAAAGGTCATG-TCTTTAGCAG
32377264 CGTT
1 CGTT
32377268 ATCTATAGTG
Statistics
Matches: 101, Mismatches: 29, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
42 58 0.57
43 43 0.43
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (42 bp):
CGTTTTTGGAGAAAGCGTCGTTAAAGGTCATGTCTTTAGCAG
Found at i:32380480 original size:17 final size:17
Alignment explanation
Indices: 32380458--32380493 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32380448 TTGTTAGCTA
*
32380458 ATATATGCTAAATGTTG
1 ATATATGCAAAATGTTG
*
32380475 ATATATTCAAAATGTTG
1 ATATATGCAAAATGTTG
32380492 AT
1 AT
32380494 TTATAATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.42
Consensus pattern (17 bp):
ATATATGCAAAATGTTG
Found at i:32384669 original size:42 final size:43
Alignment explanation
Indices: 32384592--32384683 Score: 125
Period size: 42 Copynumber: 2.2 Consensus size: 43
32384582 TCCCAAACGT
* * *
32384592 GGTCTTACATGTAATCGAATATCGATGCCACTGTCCCAGACAA
1 GGTCTTAAATGAAATCAAATATCGATGCCACTGTCCCAGACAA
*
32384635 GGTCTTAAATGAAATCAAATA-CGATGCCGA-TGTCCCAGACAT
1 GGTCTTAAATGAAATCAAATATCGATGCC-ACTGTCCCAGACAA
32384677 GGTCTTA
1 GGTCTTA
32384684 CACGTAAACC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
42 25 0.57
43 19 0.43
ACGTcount: A:0.32, C:0.23, G:0.20, T:0.26
Consensus pattern (43 bp):
GGTCTTAAATGAAATCAAATATCGATGCCACTGTCCCAGACAA
Found at i:32386507 original size:34 final size:34
Alignment explanation
Indices: 32386464--32386533 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
32386454 TGAATAATCC
32386464 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
1 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
32386498 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
1 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
32386532 GT
1 GT
32386534 CTATCAACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (34 bp):
GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
Found at i:32391923 original size:42 final size:43
Alignment explanation
Indices: 32391833--32391927 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 43
32391823 ATCTTTAAGG
* * * *
32391833 TGGTCCTACATGTAATCAAATATCGATGCCACCGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATCGATGCCAACGTCCCAAACA
* *
32391876 GGGTCTTACATGAAATCAAATA-CGATG-CAGATGTCCCAAACA
1 TGGTCTTACATGAAATCAAATATCGATGCCA-ACGTCCCAAACA
32391918 TGGTCTTACA
1 TGGTCTTACA
32391928 CGTAAACCTA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.05
42 23 0.52
43 19 0.43
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGCCAACGTCCCAAACA
Found at i:32396576 original size:29 final size:29
Alignment explanation
Indices: 32396515--32396613 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
32396505 AATGACATTG
32396515 GCACTAAGTGTGCGAGTTT-AATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
32396543 GCACTAAGTGTGCGAGTTTGAATTGTATA
1 GCACTAAGTGTGCGAGTTTGAATTGTATA
32396572 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
1 GCACTAAGTGTGCGAGTTTGAAT-TGTATA
32396600 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
32396614 GACTTACTGT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.32
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTGAATTGTATA
Found at i:32398808 original size:19 final size:20
Alignment explanation
Indices: 32398768--32398808 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
32398758 TGGATGAATG
*
32398768 AAAAGAAAAGAAAGAAATGA
1 AAAAGAAAAGAAAGAAAGGA
32398788 AAAAG-AAAGAATA-AAAGGA
1 AAAAGAAAAGAA-AGAAAGGA
32398807 AA
1 AA
32398809 GAAATGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.05
Consensus pattern (20 bp):
AAAAGAAAAGAAAGAAAGGA
Found at i:32400542 original size:26 final size:26
Alignment explanation
Indices: 32400486--32400547 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
32400476 CCATATGTTT
* * *
32400486 TTAAAATTTAAGGAAATAATAATAGA
1 TTAAAAATTCAGGAAATAATAATAAA
* *
32400512 CTAAAAATTCAGGAAATAATGATAAA
1 TTAAAAATTCAGGAAATAATAATAAA
32400538 TTAAAAATTC
1 TTAAAAATTC
32400548 TATTACACTA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.56, C:0.05, G:0.10, T:0.29
Consensus pattern (26 bp):
TTAAAAATTCAGGAAATAATAATAAA
Found at i:32403766 original size:14 final size:14
Alignment explanation
Indices: 32403747--32403793 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
32403737 TGAGTTGCAG
32403747 AGAAATAGAAAGAA
1 AGAAATAGAAAGAA
32403761 AGAAATCA-AAAGAA
1 AGAAAT-AGAAAGAA
* * *
32403775 ATAAAGAGAGAGAA
1 AGAAATAGAAAGAA
32403789 AGAAA
1 AGAAA
32403794 GTGCAATGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.70, C:0.02, G:0.21, T:0.06
Consensus pattern (14 bp):
AGAAATAGAAAGAA
Found at i:32406689 original size:19 final size:19
Alignment explanation
Indices: 32406667--32406704 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32406657 TATTTCATGA
*
32406667 AAAATTAGAAAAAAAACAT
1 AAAATTACAAAAAAAACAT
*
32406686 AAAATTACTAAAAAAACAT
1 AAAATTACAAAAAAAACAT
32406705 GTCGAAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.71, C:0.08, G:0.03, T:0.18
Consensus pattern (19 bp):
AAAATTACAAAAAAAACAT
Found at i:32412663 original size:3 final size:3
Alignment explanation
Indices: 32412655--32412765 Score: 159
Period size: 3 Copynumber: 36.7 Consensus size: 3
32412645 TAATTTTAAC
* *
32412655 ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATTT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
32412701 ATT ATT ATT ACT ATT ACT ACT ACT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32412749 ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT AT
32412766 ACTATTAAAC
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
3 96 0.97
4 3 0.03
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:32418532 original size:46 final size:46
Alignment explanation
Indices: 32418477--32418657 Score: 197
Period size: 46 Copynumber: 3.9 Consensus size: 46
32418467 TAGGATGGTT
32418477 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * * *
32418523 GAGCGTCCGAACTTGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAAC
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C
* *
32418569 TAGGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGC
1 GA-GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
* * ** * *
32418616 AAACGCCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32418658 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 68 0.61
47 31 0.28
48 2 0.02
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
GAGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC
Found at i:32418638 original size:93 final size:93
Alignment explanation
Indices: 32418479--32418649 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
32418469 GGATGGTTGA
* * * * *
32418479 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTTGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
32418544 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
32418572 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
32418637 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
32418650 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:32427650 original size:47 final size:47
Alignment explanation
Indices: 32427595--32427835 Score: 347
Period size: 47 Copynumber: 5.1 Consensus size: 47
32427585 TTAGGATTTT
** * *
32427595 ATGTGATGAATGTGAATGTGTATATATATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
32427642 ATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
32427689 ATGTGGTGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
32427736 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
32427783 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGTCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
32427830 ATGTGA
1 ATGTGA
32427836 AATATATATA
Statistics
Matches: 172, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 172 1.00
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:32427699 original size:94 final size:94
Alignment explanation
Indices: 32427616--32427835 Score: 386
Period size: 94 Copynumber: 2.3 Consensus size: 94
32427606 GTGAATGTGT
*
32427616 ATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCG
32427681 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* *
32427710 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCG
32427775 AATGGCCAATGTGGTGAATATGAACATGC
66 AATGGCCAATGTGGTGAATATGAACATGC
* * *
32427804 ATATATGTGGTAAAGCCGAATGGTCAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
32427836 AATATATATA
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 119 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (94 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCG
AATGGCCAATGTGGTGAATATGAACATGC
Found at i:32427791 original size:25 final size:25
Alignment explanation
Indices: 32427669--32427791 Score: 59
Period size: 23 Copynumber: 5.2 Consensus size: 25
32427659 ATGCATATAT
32427669 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* ** *
32427694 GTGAATATGAAC--AT-G-CATATAT-
1 GTG-ATAAGGCCGAATGGCCA-ATGTG
*
32427716 GTGATAAGGCCGAATGGCCTATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
32427741 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
32427763 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
32427788 GTGA
1 GTGA
32427792 ATATGAACAT
Statistics
Matches: 66, Mismatches: 18, Indels: 28
0.59 0.16 0.25
Matches are distributed among these distances:
21 5 0.08
22 10 0.15
23 16 0.24
24 16 0.24
25 14 0.21
26 5 0.08
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:32427886 original size:94 final size:92
Alignment explanation
Indices: 32427616--32427877 Score: 326
Period size: 94 Copynumber: 2.8 Consensus size: 92
32427606 GTGAATGTGT
* * * *
32427616 ATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATATGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATG--TATATGTGGTAAGGCCG
32427681 AATGGCCAATGTGGTGAATATGAACATGC
64 AATGGCCAATGTGGTGAATATGAACATGC
* * * *
32427710 ATATATGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCG
1 ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTG-G-TAAGGCCG
32427775 AATGGCCAATGTGGTGAATATGAACATGC
64 AATGGCCAATGTGGTGAATATGAACATGC
* * * * *
32427804 ATATATGTGGTAAAGCCGAATGGTCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAG
1 ATATATGTGATAAAGCCGAATGGCCAATGTG--AT-GA-ATATGAG-CATGTATATGTGGTAAGG
32427869 CCGAATGGC
61 CCGAATGGC
32427878 TAGTGTGAAA
Statistics
Matches: 148, Mismatches: 13, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
92 7 0.05
94 108 0.73
96 2 0.01
97 14 0.09
98 7 0.05
99 10 0.07
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (92 bp):
ATATATGTGATAAAGCCGAATGGCCAATGTGATGAATATGAGCATGTATATGTGGTAAGGCCGAA
TGGCCAATGTGGTGAATATGAACATGC
Found at i:32428222 original size:37 final size:37
Alignment explanation
Indices: 32428040--32428219 Score: 279
Period size: 37 Copynumber: 4.9 Consensus size: 37
32428030 GGAAATATAT
* *
32428040 TCCGGGTGAGACCCGATGACTACGCGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
*
32428077 TCCGGGTAAGACCCGATGCCTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
32428114 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
* * *
32428151 TCCGGGCAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
* * *
32428188 TCCGGGTAAGACCGGATAACTTCGTGTGGAGA
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGA
32428220 TTTCGTCTAA
Statistics
Matches: 132, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 132 1.00
ACGTcount: A:0.23, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGAGTATG
Found at i:32432242 original size:54 final size:51
Alignment explanation
Indices: 32432156--32433052 Score: 312
Period size: 54 Copynumber: 18.8 Consensus size: 51
32432146 AAGATAGCGG
* *
32432156 ATCTTAT-TTCCCTGATA-TTGTAGTGGAACAGATTGAAGCTTCAAATTATGGCGA
1 ATCTTATCTT-CCTGA-AGTTGCAGTGGAGCAGATTGAAGC--CAAATTAT-GCGA
* * *
32432210 ATCTTATCTTTCTGAAGTTGCAATGGAGCAGATTGAAGCC--ACTA-GCG-
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * *
32432257 ---TTATCTCCCTAAAGTTGCAGTAGAGCAGATTG-A---AAA-T-TGCGG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * *
32432299 ATCTTAT-TTCCCTGATGTTGCAGTGGAACAGATTGAGGCTACAAATTATGGCGA
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--CAAATTAT-GCGA
* * **
32432353 ATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTGAAGCC--ACCA-GC--
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * *
32432399 --CTTATC-TCCTTGAAGTTGCAATGGAGTAGACTGAAG----A-CAT-CGA
1 ATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * *
32432442 ATCTTAT-TTCCCTGACGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCAA
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--CAAATTAT-GCGA
* *
32432496 ATCTTATTTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCC-----A--CCA
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * ** * * *
32432540 ACCTTATCTCCCTAAAGTTGCAACGAAGCAGACTGAAG--ACA--A--CGA
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * *
32432585 ATCTTAT-TTCCCTTATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGA
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--CAAATTAT-GCGA
* * * * * *
32432639 CTCTTACCTTTCTAAAGTTGCAGTCGAGCAGATTGAAGCC--ACTA-GC--
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * * * *
32432685 --CTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AA-CGACAGTA----A
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* *
32432728 ATCTTAT-TTCCCTGACGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGA
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC--CAAATTAT-GCGA
* * *
32432782 ATCTTATCTTCTTAAAGTTGCAGTGGAGCAGATTGAAGCC--ATCA-GC--
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * *
32432828 --CTTATCTCCCTGAAGTTGCAGCGAAGCAGACTGAAG----A-TA-GCGA
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * *
32432871 ATCTTAT-TTCCTTGACGTTGTAGTGGAACAGATTGAAGCTACAAATTATGGCGA
1 ATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAGC--CAAATTAT-GCGA
* * * **
32432925 ATCTTATCTTCTTGAAGTTGTAGTGGAACAGATTGAAGCC--ACCA-GC--
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
* * * *
32432971 --CTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAG----A-TA-GCGG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
32433014 ATCTTAT-TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
1 ATCTTATCTT-CCTGAAGTTGCAGTGGAGCAGATTGAAGC
32433053 TACAAGTTAC
Statistics
Matches: 638, Mismatches: 116, Indels: 186
0.68 0.12 0.20
Matches are distributed among these distances:
41 13 0.02
42 5 0.01
43 5 0.01
44 184 0.29
45 162 0.25
46 4 0.01
47 2 0.00
48 11 0.02
49 6 0.01
50 13 0.02
51 6 0.01
52 11 0.02
53 2 0.00
54 201 0.32
55 13 0.02
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (51 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCAAATTATGCGA
Found at i:32432299 original size:143 final size:143
Alignment explanation
Indices: 32432025--32433057 Score: 1376
Period size: 143 Copynumber: 7.2 Consensus size: 143
32432015 CTCATCTCCT
* * * * * * *
32432025 TGATGTTGCAGTGGAACAGTTTAAAGCTACGAATTATAGTGAATCTTATCTTCCTGAAGTTACAG
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAG
* * * * *
32432090 TGAAGCAGGA-TGAAGCCACTAGCCTTATCTCCCTAAAGTTGCAGCGGAGCAAATTGAAGATAGC
66 TGGAGCA-GATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
*
32432154 GGATCTTATTTCCC
130 GAATCTTATTTCCC
* * * *
32432168 TGATATTGTAGTGGAACAGATTGAAGCTTCAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAA
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAG
* * * * * *
32432233 TGGAGCAGATTGAAGCCACTAGCGTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAAATTGCG
66 TGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
*
32432298 GATCTTATTTCCC
131 AATCTTATTTCCC
*
32432311 TGATGTTGCAGTGGAACAGATTGAGGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAG
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAG
* * * * * * *
32432376 TGGAGTAGATTGAAGCCACCAGCCTTATCTCCTTGAAGTTGCAATGGAGTAGACTGAAGACATCG
66 TGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
32432441 AATCTTATTTCCC
131 AATCTTATTTCCC
* * *
32432454 TGACGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCAAATCTTAT-TTTCCTGAAGTTGCA
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTT-CTGAAGTTGCA
* * * ** * * *
32432518 GTGGAGCAGATTGAAGCCACCAACCTTATCTCCCTAAAGTTGCAACGAAGCAGACTGAAGACAAC
65 GTGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
32432583 GAATCTTATTTCCC
130 GAATCTTATTTCCC
* * * *
32432597 TTATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGACTCTTACCTTTCTAAAGTTGCAG
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAG
* * * *
32432662 TCGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AACGACAGT
66 TGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAA-GATAGC
*
32432726 AAATCTTATTTCCC
130 GAATCTTATTTCCC
* *
32432740 TGACGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATC-TTCTTAAAGTTGCA
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTC-TGAAGTTGCA
* *
32432804 GTGGAGCAGATTGAAGCCA-TCAGCCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTGAAGATAG
65 GTGGAGCAGATTGAAGCCACT-AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAG
*
32432868 CGAATCTTATTTCCT
129 CGAATCTTATTTCCC
* * *
32432883 TGACGTTGTAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATC-TTCTTGAAGTTGTA
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTC-TGAAGTTGCA
* * *
32432947 GTGGAACAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATAGC
65 GTGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGC
*
32433012 GGATCTTATTTCCC
130 GAATCTTATTTCCC
* *
32433026 TGAAGTTGCAGTGGAGCAGATTGAAGCTACAA
1 TGATGTTGCAGTGGAACAGATTGAAGCTACAA
32433058 GTTACTGATA
Statistics
Matches: 792, Mismatches: 90, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
142 11 0.01
143 776 0.98
144 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (143 bp):
TGATGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAG
TGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCG
AATCTTATTTCCC
Found at i:32432622 original size:45 final size:44
Alignment explanation
Indices: 32432495--32433052 Score: 126
Period size: 45 Copynumber: 11.9 Consensus size: 44
32432485 AATTATGGCA
* * * *
32432495 AATCTTATTTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACC
1 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCAACC
* * ** * *
32432539 AACCTTATCTCCCTAAAGTTGCA-ACGAAGCAGACTGAAGACAACG
1 AATCTTATTTCCCTAAAGTTGCAGTGGAA-CAGATTGAAG-CAACC
* * * *
32432584 AATCTTATTTCCCTTATGTTGCAGTGGAACAGATTGAAGCTACA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCAACC
* * * *
32432628 AAT-TATGGCGACTCTTACCTTTCTAAAGTTGCAGTCGAGCAGATTGAAGCCACT
1 AATCT-T----A-T-TT-CC---CTAAAGTTGCAGTGGAACAGATTGAAGCAACC
** * * * * * ***
32432682 AGCCTTATCTCCCTGAAGTTGTAGTGGAGCAGACT-AACGACAGTA
1 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAA-G-CAACC
* * *
32432727 AATCTTATTTCCCTGACGTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCG
1 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAG---C--A--A---CC
* * * *
32432781 AATCTTATCTT-CTTAAAGTTGCAGTGGAGCAGATTGAAGCCATC
1 AATCTTAT-TTCCCTAAAGTTGCAGTGGAACAGATTGAAGCAACC
** * * * * *
32432825 AGCCTTATCTCCCTGAAGTTGCAG-CGAAGCAGACTGAAG-ATAGCG
1 AATCTTATTTCCCTAAAGTTGCAGTGGAA-CAGATTGAAGCA-A-CC
* * * * *
32432870 AATCTTATTTCCTTGACGTTGTAGTGGAACAGATTGAAGCTACAAATTATGGCG
1 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAG---C--A--A---CC
* * * *
32432924 AATCTTATCTT-CTTGAAGTTGTAGTGGAACAGATTGAAGCCACC
1 AATCTTAT-TTCCCTAAAGTTGCAGTGGAACAGATTGAAGCAACC
** * * * *
32432968 AGCCTTATCTCCCTGAAGTTGCAGT-GAAGCAGACTGAAG-ATAGCG
1 AATCTTATTTCCCTAAAGTTGCAGTGGAA-CAGATTGAAGCA-A-CC
* * *
32433013 GATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
1 AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGC
32433053 TACAAGTTAC
Statistics
Matches: 376, Mismatches: 89, Indels: 96
0.67 0.16 0.17
Matches are distributed among these distances:
43 12 0.03
44 111 0.30
45 119 0.32
46 10 0.03
47 6 0.02
48 2 0.01
49 3 0.01
50 3 0.01
51 5 0.01
52 2 0.01
54 98 0.26
55 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
AATCTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCAACC
Found at i:32433482 original size:20 final size:20
Alignment explanation
Indices: 32433457--32433494 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32433447 CCAAATCCAA
32433457 AAAC-AAACCTAAACCCAACT
1 AAACAAAACCT-AACCCAACT
32433477 AAACAAAACCTAACCCAA
1 AAACAAAACCTAACCCAA
32433495 AACCTATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.58, C:0.34, G:0.00, T:0.08
Consensus pattern (20 bp):
AAACAAAACCTAACCCAACT
Found at i:32434533 original size:3 final size:3
Alignment explanation
Indices: 32434525--32434653 Score: 124
Period size: 3 Copynumber: 44.3 Consensus size: 3
32434515 TAATTTTAAC
* * * *
32434525 ATT ATT ATT ACT -TT ATT ATT AAT ACT ATT ATT ATT ATT -TT -TT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* ** *
32434570 ATT ATT ATT ATTT ATT ATT ATT ATT ATT ATT ATT ACT ATT ACA ACT
1 ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
32434616 ATT -GT ATT ATT ACT ATT ATT ATT ATT ATT A-T ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32434654 AACTGATTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
2 8 0.08
3 93 0.89
4 3 0.03
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32434571 original size:19 final size:19
Alignment explanation
Indices: 32434537--32434653 Score: 125
Period size: 19 Copynumber: 6.2 Consensus size: 19
32434527 TATTATTACT
*
32434537 TTATTA-TTAATACTATTA
1 TTATTATTTATTACTATTA
*
32434555 TTATTATTTTTTACTATTA
1 TTATTATTTATTACTATTA
*
32434574 TTATTATTTATTATTATTA
1 TTATTATTTATTACTATTA
32434593 TTATTA-TTATTACTATTACAA
1 TTATTATTTATTACTATT---A
* *
32434614 CTATTGTATTATTACTATTA
1 TTATTAT-TTATTACTATTA
32434634 TTATTA-TTATTA-TATTA
1 TTATTATTTATTACTATTA
32434651 TTA
1 TTA
32434654 AACTGATTTA
Statistics
Matches: 84, Mismatches: 9, Indels: 13
0.79 0.08 0.12
Matches are distributed among these distances:
17 8 0.10
18 22 0.26
19 33 0.39
20 5 0.06
21 5 0.06
23 11 0.13
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (19 bp):
TTATTATTTATTACTATTA
Found at i:32444900 original size:6 final size:6
Alignment explanation
Indices: 32444889--32444963 Score: 79
Period size: 6 Copynumber: 12.7 Consensus size: 6
32444879 CCAATCTTTC
32444889 TTTTTA TTTTTA TTTTTA TTTTTA --TTTA TTTTT- TCTTTTA TTATTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA T-TTTTA TT-TTTA
32444936 TTATTT- TCTTTTA TTTTTA -TTTTA TTTT
1 TT-TTTA T-TTTTA TTTTTA TTTTTA TTTT
32444964 AGTTAAATAT
Statistics
Matches: 61, Mismatches: 0, Indels: 16
0.79 0.00 0.21
Matches are distributed among these distances:
4 4 0.07
5 6 0.10
6 38 0.62
7 13 0.21
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:32444953 original size:31 final size:31
Alignment explanation
Indices: 32444889--32444961 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
32444879 CCAATCTTTC
32444889 TTTTTA-TTT-TTATTTTTATTTTTATTTAT
1 TTTTTATTTTATTATTTTTATTTTTATTTAT
*
32444918 TTTTTCTTTTATTATTTATTATTTTCT-TTTA-
1 TTTTTATTTTATTATTT-TTATTTT-TATTTAT
32444949 TTTTTATTTTATT
1 TTTTTATTTTATT
32444962 TTAGTTAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 5 0.13
30 3 0.08
31 18 0.47
32 11 0.29
33 1 0.03
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (31 bp):
TTTTTATTTTATTATTTTTATTTTTATTTAT
Found at i:32444963 original size:16 final size:15
Alignment explanation
Indices: 32444895--32444964 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 15
32444885 TTTCTTTTTA
32444895 TTTTTATTTTTATTT
1 TTTTTATTTTTATTT
32444910 TTATTTATTTTT-TCTT
1 TT-TTTATTTTTAT-TT
*
32444926 TTATTATTTATTATTT
1 TTTTTATTT-TTATTT
32444942 TCTTTTATTTTTATTT
1 T-TTTTATTTTTATTT
32444958 TATTTTA
1 T-TTTTA
32444965 GTTAAATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
15 9 0.19
16 30 0.64
17 8 0.17
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTATTTTTATTT
Found at i:32446155 original size:1 final size:1
Alignment explanation
Indices: 32446149--32446193 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
32446139 TAATAAATTT
* * * *
32446149 AAAAAAATAAAAAAAAAAAAAAAAAAAGAAAAAAGAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32446194 TAAGTACTAA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.91, C:0.00, G:0.07, T:0.02
Consensus pattern (1 bp):
A
Found at i:32446162 original size:10 final size:10
Alignment explanation
Indices: 32446149--32446193 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
32446139 TAATAAATTT
*
32446149 AAAAAAATAA
1 AAAAAAAGAA
*
32446159 AAAAAAAAAA
1 AAAAAAAGAA
32446169 AAAAAAAGAA
1 AAAAAAAGAA
*
32446179 AAAAGAAGAA
1 AAAAAAAGAA
32446189 AAAAA
1 AAAAA
32446194 TAAGTACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.91, C:0.00, G:0.07, T:0.02
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:32458015 original size:21 final size:23
Alignment explanation
Indices: 32457990--32458042 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
32457980 GCCTGAGCCA
32457990 CTGCTG-T-TGTTGTTGAAAATG
1 CTGCTGATGTGTTGTTGAAAATG
*
32458011 CTGCTGATTGTGTTGTTGAAAGTG
1 CTGCTGA-TGTGTTGTTGAAAATG
32458035 CTGCTGAT
1 CTGCTGAT
32458043 TATGAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
23 2 0.07
24 20 0.71
ACGTcount: A:0.17, C:0.11, G:0.30, T:0.42
Consensus pattern (23 bp):
CTGCTGATGTGTTGTTGAAAATG
Found at i:32458029 original size:24 final size:24
Alignment explanation
Indices: 32457997--32458043 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
32457987 CCACTGCTGT
32457997 TGTTGTTGAAAATGCTGCTGATTG
1 TGTTGTTGAAAATGCTGCTGATTG
*
32458021 TGTTGTTGAAAGTGCTGCTGATT
1 TGTTGTTGAAAATGCTGCTGATT
32458044 ATGAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.09, G:0.30, T:0.43
Consensus pattern (24 bp):
TGTTGTTGAAAATGCTGCTGATTG
Found at i:32458926 original size:5 final size:6
Alignment explanation
Indices: 32458913--32458953 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
32458903 ATAATTTAAT
32458913 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
32458954 ACATATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:32458947 original size:21 final size:22
Alignment explanation
Indices: 32458890--32458947 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 22
32458880 CAACCTAATT
*
32458890 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
32458915 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
32458935 ATAAAAATAAAAA
1 ATAAAAATAAAAA
32458948 TAAAAAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 10 0.32
21 10 0.32
22 3 0.10
24 1 0.03
25 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:32458954 original size:20 final size:20
Alignment explanation
Indices: 32458913--32458954 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
32458903 ATAATTTAAT
**
32458913 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
32458933 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
32458953 AA
1 AA
32458955 CATATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:32458987 original size:9 final size:9
Alignment explanation
Indices: 32458973--32459022 Score: 82
Period size: 9 Copynumber: 5.6 Consensus size: 9
32458963 TTTATACAAA
32458973 TAATTCGGT
1 TAATTCGGT
*
32458982 TAATTCGGG
1 TAATTCGGT
32458991 TAATTCGGT
1 TAATTCGGT
*
32459000 TAATTCGAT
1 TAATTCGGT
32459009 TAATTCGGT
1 TAATTCGGT
32459018 TAATT
1 TAATT
32459023 TTATACTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (9 bp):
TAATTCGGT
Found at i:32459865 original size:18 final size:18
Alignment explanation
Indices: 32459822--32459875 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
32459812 ATAATAAAAT
*
32459822 ACTATTAAGATAAGTATTA
1 ACTATTAAAATAA-TATTA
* **
32459841 AAT-TTAATTTAATATTA
1 ACTATTAAAATAATATTA
32459858 ACTATTAAAATAATATTA
1 ACTATTAAAATAATATTA
32459876 TTTTTTGAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 7 0.25
18 19 0.68
19 2 0.07
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (18 bp):
ACTATTAAAATAATATTA
Found at i:32459871 original size:23 final size:22
Alignment explanation
Indices: 32459775--32459871 Score: 63
Period size: 23 Copynumber: 4.1 Consensus size: 22
32459765 TTTAATATTA
*
32459775 AATTTAAT-CTAATATTAAAAT
1 AATTTAATATTAATATTAAAAT
*
32459796 AACCACTTTAATATTAATAATAAAAT
1 -A--A-TTTAATATTAATATTAAAAT
* * *
32459822 ACTATTAAGA-TAAGTATTAAATTT
1 AAT-TTAATATTAA-TATTAAA-AT
32459846 AATTTAATATTAACTATTAAAAT
1 AATTTAATATTAA-TATTAAAAT
32459869 AAT
1 AAT
32459872 ATTATTTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
22 5 0.09
23 20 0.35
24 14 0.25
25 7 0.12
26 11 0.19
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTTAATATTAATATTAAAAT
Found at i:32462172 original size:14 final size:13
Alignment explanation
Indices: 32462143--32462175 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
32462133 AATATAGTGT
*
32462143 AAAAGTAATGTTA
1 AAAAATAATGTTA
32462156 AAAAATAATGTTA
1 AAAAATAATGTTA
32462169 AAAAATA
1 AAAAATA
32462176 GTGTCTCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (13 bp):
AAAAATAATGTTA
Found at i:32463962 original size:40 final size:40
Alignment explanation
Indices: 32463815--32464035 Score: 182
Period size: 40 Copynumber: 5.5 Consensus size: 40
32463805 AATACTCCAT
** * *
32463815 ATCTCGCACACTAAGTG-TCAAATCATAGCTGAAGCTATTATA
1 ATCTCGCACACTAAGTGCT-TTAT-ATAGCCGAAGCTA-TCTA
* *
32463857 ATCTCGCACACTAAGTACCTTT-TATAGCCAAAGCTATCTCA
1 ATCTCGCACACTAAGT-GCTTTATATAGCCGAAGCTATCT-A
* * ** * *
32463898 CTCTTGCACACTAAGTGCCATATATAGCTGAAGCTATTCTG
1 ATCTCGCACACTAAGTGCTTTATATAGCCGAAGCTA-TCTA
*
32463939 AT-TCGCACATTAAGTGCTTTATATAGCCGAAGCTATCTCA
1 ATCTCGCACACTAAGTGCTTTATATAGCCGAAGCTATCT-A
* * *
32463979 ATAT-ACACACTAAGTGCTTTATATAGCCGAAGCTATCTCG
1 ATCTCGCACACTAAGTGCTTTATATAGCCGAAGCTATCT-A
*
32464019 AT-ACGCACACTAAGTGC
1 ATCTCGCACACTAAGTGC
32464036 CAAACATAAC
Statistics
Matches: 145, Mismatches: 26, Indels: 18
0.77 0.14 0.10
Matches are distributed among these distances:
39 3 0.02
40 81 0.56
41 40 0.28
42 20 0.14
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (40 bp):
ATCTCGCACACTAAGTGCTTTATATAGCCGAAGCTATCTA
Found at i:32464026 original size:80 final size:80
Alignment explanation
Indices: 32463821--32464035 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
32463811 CCATATCTCG
* * * * * * *
32463821 CACACTAAGTGTCAAATCATAGCTGAAGCTATTATAATCTCGCACACTAAGTACCTTTTATAGCC
1 CACACTAAGTGCCATAT-ATAGCCGAAGCTATTCTGAT-ACGCACACTAAGT-GCTTTTATAGCC
* * *
32463886 AAAGCTATCTCACTCTTG
63 AAAGCTATCTCAATCATA
* * * *
32463904 CACACTAAGTGCCATATATAGCTGAAGCTATTCTGATTCGCACATTAAGTGCTTTATATAGCCGA
1 CACACTAAGTGCCATATATAGCCGAAGCTATTCTGATACGCACACTAAGTGCTTT-TATAGCCAA
32463969 AGCTATCTCAAT-ATA
65 AGCTATCTCAATCATA
**
32463984 CACACTAAGTGCTTTATATAGCCGAAGCTA-TCTCGATACGCACACTAAGTGC
1 CACACTAAGTGCCATATATAGCCGAAGCTATTCT-GATACGCACACTAAGTGC
32464036 CAAACATAAC
Statistics
Matches: 115, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.03
80 48 0.42
81 31 0.27
82 18 0.16
83 15 0.13
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.29
Consensus pattern (80 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATTCTGATACGCACACTAAGTGCTTTTATAGCCAAA
GCTATCTCAATCATA
Found at i:32466569 original size:2 final size:2
Alignment explanation
Indices: 32466562--32466591 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
32466552 TTCTAAAGCA
32466562 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32466592 TTGTTATGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32469924 original size:46 final size:47
Alignment explanation
Indices: 32469851--32469989 Score: 129
Period size: 47 Copynumber: 3.0 Consensus size: 47
32469841 TCACATTTCA
* * * *
32469851 CACACCGAAGCCATAGCCCA-ACCATGGTCTTACACAG-ATCACATAC
1 CACACCGATGCCATATCCCAGA-TATGGTCTTACACAGAAGCACATAC
* * * **
32469897 CACACTGATGCCATATCTCAGATATGGTCTTACATAGAAGCACATGT
1 CACACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATAC
* * * **
32469944 CGCGCCGATGCCATATCCCAGATATGGTCTTATATGGAAGCACATA
1 CACACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATA
32469990 ATCACATATT
Statistics
Matches: 75, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
46 29 0.39
47 46 0.61
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.22
Consensus pattern (47 bp):
CACACCGATGCCATATCCCAGATATGGTCTTACACAGAAGCACATAC
Found at i:32477275 original size:13 final size:13
Alignment explanation
Indices: 32477259--32477296 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
32477249 TGCTGTGGAA
*
32477259 AAGTACTTTTGAG
1 AAGTGCTTTTGAG
*
32477272 AAGTGTTTTTGAG
1 AAGTGCTTTTGAG
32477285 AAGTGCTTTTGA
1 AAGTGCTTTTGA
32477297 AAATTTTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.42
Consensus pattern (13 bp):
AAGTGCTTTTGAG
Found at i:32479492 original size:72 final size:72
Alignment explanation
Indices: 32479347--32479582 Score: 341
Period size: 72 Copynumber: 3.3 Consensus size: 72
32479337 TCATATATAC
* *
32479347 ACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCCCAAAGAC
1 ACAACTATTGATAAAACTAGA-TTACATATAAATAAGTAGAACATAAATTCAATAT-CCAAAAAC
32479410 CAAACATAA
64 CAAACATAA
* * * * *
32479419 ACAGCTATTAATAAAAGTAGATTACATATACATAAGTAGAACATAAATTCAATATTCAAAAACCA
1 ACAACTATTGATAAAACTAGATTACATATAAATAAGTAGAACATAAATTCAATATCCAAAAACCA
32479484 AACATAA
66 AACATAA
* * *
32479491 ACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAGTTCAATATCCAAAAACCA
1 ACAACTATTGATAAAACTAGATTACATATAAATAAGTAGAACATAAATTCAATATCCAAAAACCA
32479556 AACATAA
66 AACATAA
*
32479563 ATAACTATTGATAAAACTAG
1 ACAACTATTGATAAAACTAG
32479583 TTTAGCATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
72 116 0.80
73 29 0.20
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.24
Consensus pattern (72 bp):
ACAACTATTGATAAAACTAGATTACATATAAATAAGTAGAACATAAATTCAATATCCAAAAACCA
AACATAA
Found at i:32482893 original size:52 final size:52
Alignment explanation
Indices: 32482792--32482895 Score: 147
Period size: 52 Copynumber: 2.0 Consensus size: 52
32482782 CTGTAAGACA
*
32482792 TTTTCCATCTCCTCTTCATCCAGGTAAGCCTTTTTCTTCTTGCGTTCTTCAACT
1 TTTTCCATCTCCTCTTCATCCAGGTAAG-C-TCTTCTTCTTGCGTTCTTCAACT
* *
32482846 TTTTCCATCTCCTTCTTTATCCAGGTAAG-TCTTCTTCTTTCGTTCTTCAA
1 TTTTCCATCTCC-TCTTCATCCAGGTAAGCTCTTCTTCTTGCGTTCTTCAA
32482896 ATATCTTCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
52 19 0.41
54 12 0.26
55 15 0.33
ACGTcount: A:0.13, C:0.30, G:0.09, T:0.48
Consensus pattern (52 bp):
TTTTCCATCTCCTCTTCATCCAGGTAAGCTCTTCTTCTTGCGTTCTTCAACT
Found at i:32486546 original size:27 final size:26
Alignment explanation
Indices: 32486515--32486575 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
32486505 TTTATTAAAC
* * *
32486515 TACCCCTAAGTATGAAAATTACCGTTT
1 TACCCCTAAGTA-CAAAATGACCGTTA
* *
32486542 TACCCCTAGGTACAAAATGATCGTTA
1 TACCCCTAAGTACAAAATGACCGTTA
32486568 TACCCCTA
1 TACCCCTA
32486576 GGGTTAATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 18 0.62
27 11 0.38
ACGTcount: A:0.33, C:0.26, G:0.11, T:0.30
Consensus pattern (26 bp):
TACCCCTAAGTACAAAATGACCGTTA
Found at i:32486920 original size:20 final size:19
Alignment explanation
Indices: 32486877--32486922 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
32486867 ACTGTTTTAT
*
32486877 TATGGGCCAACTGTATTAA
1 TATGGGCCAACTGTATCAA
* *
32486896 AATGGGCCGAACTGTGTCAA
1 TATGGGCC-AACTGTATCAA
32486916 TATGGGC
1 TATGGGC
32486923 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.26
Consensus pattern (19 bp):
TATGGGCCAACTGTATCAA
Found at i:32489838 original size:15 final size:15
Alignment explanation
Indices: 32489814--32489868 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
32489804 ACTCCATTCC
* *
32489814 CTTTACTCATGGTAA
1 CTTTAGTCATAGTAA
*
32489829 CTTTAATCATAGTAA
1 CTTTAGTCATAGTAA
32489844 CTTTAGTCATAGTAA
1 CTTTAGTCATAGTAA
32489859 CTTTAGTCAT
1 CTTTAGTCAT
32489869 TGCTTGAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (15 bp):
CTTTAGTCATAGTAA
Found at i:32491738 original size:47 final size:44
Alignment explanation
Indices: 32491682--32491772 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 44
32491672 GTACATATAT
* * *
32491682 GTATTAAAATATATACGTAATAATAGGAATAAAAGGTATATACATA
1 GTATTAAAATATATACATAAT-ATAGCAATAAAA-ATATATACATA
* *
32491728 GTATTAAAAATATGTACATAATATAGCATTAAAAATATATACATA
1 GTATT-AAAATATATACATAATATAGCAATAAAAATATATACATA
32491773 AGATAATATG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
45 10 0.26
46 15 0.38
47 14 0.36
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (44 bp):
GTATTAAAATATATACATAATATAGCAATAAAAATATATACATA
Found at i:32491753 original size:25 final size:25
Alignment explanation
Indices: 32491725--32491910 Score: 88
Period size: 25 Copynumber: 8.1 Consensus size: 25
32491715 AGGTATATAC
*
32491725 ATAGTATTAAAAATATGTACATAAT
1 ATAGTATTAAAAATATATACATAAT
* *
32491750 ATAGCATTAAAAATATATACATAAG
1 ATAGTATTAAAAATATATACATAAT
* *
32491775 ATAATATGT--AAA-A-AT--GTAAT
1 ATAGTAT-TAAAAATATATACATAAT
* *
32491795 ATAGTATTAGAAATATATACATGAT
1 ATAGTATTAAAAATATATACATAAT
32491820 ATA-TA-T-AAAA-A-ATAC--AAT
1 ATAGTATTAAAAATATATACATAAT
* * *
32491838 AT--TA-AAAAGATATACATACGTAAT
1 ATAGTATTAAA-A-ATATATACATAAT
*
32491862 ATA-TA--AAAAATGTATACATAAT
1 ATAGTATTAAAAATATATACATAAT
* *
32491884 ATAGTATT-AAAATATTTACATAGT
1 ATAGTATTAAAAATATATACATAAT
32491908 ATA
1 ATA
32491911 TGCATATTAG
Statistics
Matches: 124, Mismatches: 19, Indels: 37
0.69 0.11 0.21
Matches are distributed among these distances:
17 2 0.02
18 6 0.05
19 2 0.02
20 14 0.11
21 5 0.04
22 23 0.19
23 7 0.06
24 29 0.23
25 35 0.28
26 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (25 bp):
ATAGTATTAAAAATATATACATAAT
Found at i:32491832 original size:43 final size:44
Alignment explanation
Indices: 32491746--32491832 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
32491736 AATATGTACA
*
32491746 TAATATAGCATTAAAAATATATACATAAGATAATATGTAAAAATG
1 TAATATAGCATTAAAAATATATACAT-AGATAATATGAAAAAATG
* *
32491791 TAATATAGTATTAGAAATATATACAT-GATATATAT-AAAAAAT
1 TAATATAGCATTAAAAATATATACATAGATA-ATATGAAAAAAT
32491833 ACAATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 10 0.26
44 4 0.11
45 24 0.63
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.33
Consensus pattern (44 bp):
TAATATAGCATTAAAAATATATACATAGATAATATGAAAAAATG
Found at i:32492001 original size:23 final size:24
Alignment explanation
Indices: 32491975--32492019 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
32491965 CATATATATT
32491975 AAAAATAAATACAT-AATAAAATC
1 AAAAATAAATACATAAATAAAATC
* **
32491998 AAAAGTATGTACATAAATAAAA
1 AAAAATAAATACATAAATAAAA
32492020 ATAACATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (24 bp):
AAAAATAAATACATAAATAAAATC
Found at i:32492680 original size:37 final size:37
Alignment explanation
Indices: 32492639--32492709 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
32492629 ACCCCAGCTC
* *
32492639 ACTAACTTAATAATCCAAGCCCAACATAAACTAATCT
1 ACTAACTTAATAATCCAAACCCAACACAAACTAATCT
* *
32492676 ACTAACTTAATATTTCAAACCCAACACAAACTAA
1 ACTAACTTAATAATCCAAACCCAACACAAACTAA
32492710 CCCATCTCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.48, C:0.27, G:0.01, T:0.24
Consensus pattern (37 bp):
ACTAACTTAATAATCCAAACCCAACACAAACTAATCT
Found at i:32492753 original size:40 final size:40
Alignment explanation
Indices: 32492672--32492753 Score: 103
Period size: 40 Copynumber: 2.0 Consensus size: 40
32492662 ACATAAACTA
* *
32492672 ATCTACTAACTTAATATTTCAAACCCAACACAAACTAACCC
1 ATCTACTAACTTAACATTTC-AACCAAACACAAACTAACCC
* *
32492713 ATCTCACTAACTTAACATTTC-ACTAAACACAAATTAACCC
1 ATCT-ACTAACTTAACATTTCAACCAAACACAAACTAACCC
32492753 A
1 A
32492754 CAACAAACAA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
40 17 0.47
41 4 0.11
42 15 0.42
ACGTcount: A:0.44, C:0.30, G:0.00, T:0.26
Consensus pattern (40 bp):
ATCTACTAACTTAACATTTCAACCAAACACAAACTAACCC
Found at i:32493358 original size:30 final size:29
Alignment explanation
Indices: 32493322--32493404 Score: 76
Period size: 30 Copynumber: 2.8 Consensus size: 29
32493312 TTTTTAAAAA
* *
32493322 TTTAAGGTCAAATTGTAATTTAAAAGAAAG
1 TTTAAGGTCAAAGTGAAATTT-AAAGAAAG
* *
32493352 TTTAAGGGTCGAAGTGAAATTTAAATAAAG
1 TTTAA-GGTCAAAGTGAAATTTAAAGAAAG
* * *
32493382 TTTAGGGGTCAAAATAAAATTTA
1 TTTA-AGGTCAAAGTGAAATTTA
32493405 GGAAAAATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
30 30 0.70
31 13 0.30
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.33
Consensus pattern (29 bp):
TTTAAGGTCAAAGTGAAATTTAAAGAAAG
Found at i:32493416 original size:30 final size:30
Alignment explanation
Indices: 32493382--32493454 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
32493372 TTAAATAAAG
32493382 TTTAGGGGTCAAAATAAAATTTAGGAAAAA
1 TTTAGGGGTCAAAATAAAATTTAGGAAAAA
* ** * *
32493412 TTTAGGTGTCAAAATGCAATTTATGAAAAG
1 TTTAGGGGTCAAAATAAAATTTAGGAAAAA
*
32493442 TTTAAGGGTCAAA
1 TTTAGGGGTCAAA
32493455 TGCAATTTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (30 bp):
TTTAGGGGTCAAAATAAAATTTAGGAAAAA
Found at i:32493932 original size:78 final size:78
Alignment explanation
Indices: 32493645--32494118 Score: 438
Period size: 78 Copynumber: 6.0 Consensus size: 78
32493635 TTATTCTTTA
* * * * * * * *
32493645 TTGAAAAACAAAAAATTG-AAAATAGCTCGGGATGCGACCCGAA-GTTCAACTCACCTCTCGGAT
1 TTGAAAGAC-AAAAATTGAAAAATACCTCGGCATGTGA-CCTAAGGCTCAACTCACCTCTCGCAA
*
32493708 TATGAGTTGATCTTT
64 TATGAGTTGATTTTT
*** * * *
32493723 GCAAAAG-CAAAAAATTG-AAAATACCTCAGCGTGTGACCTAAGGCTTAACTCACCTCTCGCAAT
1 TTGAAAGAC-AAAAATTGAAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAAT
32493786 ATGAGTTGATTGTTTTTTTT
65 ATGAGTTGA------TTTTT
* * * ** *
32493806 TTGAAAAACAAAAATTGAAAAATACTTCGGTATGTGACCCGAGGCTCAACTCACCTCTCACAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAATA
32493871 TGAGTTGATTTTT
66 TGAGTTGATTTTT
* * * * ** *
32493884 TTGAAAGACAAAAATTGAAAAAAACCTCAGCATGTGACCTGAGCCTCAACTCGTCTCTCGTAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAATA
* *
32493949 TGAGTT-AATTTG
66 TGAGTTGATTTTT
* * * * *
32493961 TTGAAAGACAGAAATTGAAAAATACCTCGGCATGTAACCCT-AGCCTTAACTCACCTCTCGTAAT
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGA-CCTAAGGCTCAACTCACCTCTCGCAAT
*
32494025 ATGGGTTGATTTTT
65 ATGAGTTGATTTTT
* * * ** *
32494039 TTGAAAAATAGAAATTGAAAAATACCTCGGTGTGTGACCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAATA
32494104 TGAGTTGATTTTT
66 TGAGTTGATTTTT
32494117 TT
1 TT
32494119 TTTGGAAAAA
Statistics
Matches: 324, Mismatches: 60, Indels: 24
0.79 0.15 0.06
Matches are distributed among these distances:
76 4 0.01
77 115 0.35
78 142 0.44
83 15 0.05
84 48 0.15
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (78 bp):
TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCTAAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTT
Found at i:32494026 original size:155 final size:155
Alignment explanation
Indices: 32493645--32494114 Score: 428
Period size: 155 Copynumber: 3.0 Consensus size: 155
32493635 TTATTCTTTA
* * ** * ** *
32493645 TTGAAAAACAAAAAATTG-AAAATAGCTCGGGATGCGACCCGAAG-TTCAACTCACCTCTCGGAT
1 TTGAAAAAC-AAAAATTGAAAAATACCTCGGCATGTAACCCG-AGCCTCAACTCACCTCTCACAA
* * * * * * *
32493708 TATGAGTTGA--TCTTTGCAAAAGCAAAAAATTG-AAAATACCTCAGCGTGTGACCTAAGGCTTA
64 TATGAGTTGATTTTTTTG-AAAAAC-AAAAATTGAAAAAAACCTCAGCATGTGACCCAAGCCTCA
* *
32493770 ACTCACCTCTCGCAATATGAGTTGATTGTTTTTTTT
127 ACTCACCTCTCGCAATATGAGTT-A------ATTTG
* * * *
32493806 TTGAAAAACAAAAATTGAAAAATACTTCGGTATGTGACCCGAGGCTCAACTCACCTCTCACAATA
1 TTGAAAAACAAAAATTGAAAAATACCTCGGCATGTAACCCGAGCCTCAACTCACCTCTCACAATA
* **
32493871 TGAGTTGATTTTTTTGAAAGACAAAAATTGAAAAAAACCTCAGCATGTGACCTGAGCCTCAACTC
66 TGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAAAACCTCAGCATGTGACCCAAGCCTCAACTC
** *
32493936 GTCTCTCGTAATATGAGTTAATTTG
131 ACCTCTCGCAATATGAGTTAATTTG
* * * * **
32493961 TTGAAAGACAGAAATTGAAAAATACCTCGGCATGTAACCCTAGCCTTAACTCACCTCTCGTAATA
1 TTGAAAAACAAAAATTGAAAAATACCTCGGCATGTAACCCGAGCCTCAACTCACCTCTCACAATA
* * * * * ** *
32494026 TGGGTTGATTTTTTTGAAAAATAGAAATTGAAAAATACCTCGGTGTGTGACCCAAGGCTCAACTC
66 TGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAAAACCTCAGCATGTGACCCAAGCCTCAACTC
*
32494091 ACCTCTCGCAATATGAGTTGATTT
131 ACCTCTCGCAATATGAGTTAATTT
32494115 TTTTTTTGGA
Statistics
Matches: 258, Mismatches: 46, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
155 132 0.51
160 10 0.04
161 62 0.24
162 49 0.19
163 5 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (155 bp):
TTGAAAAACAAAAATTGAAAAATACCTCGGCATGTAACCCGAGCCTCAACTCACCTCTCACAATA
TGAGTTGATTTTTTTGAAAAACAAAAATTGAAAAAAACCTCAGCATGTGACCCAAGCCTCAACTC
ACCTCTCGCAATATGAGTTAATTTG
Found at i:32500613 original size:40 final size:39
Alignment explanation
Indices: 32500448--32500631 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32500438 AAATTGAATG
* * *
32500448 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32500488 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32500528 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32500568 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32500607 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32500632 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32500656 original size:80 final size:81
Alignment explanation
Indices: 32500488--32500676 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32500478 GCTGGAAATT
* * * *
32500488 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32500553 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32500569 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32500632 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32500648 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32500677 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32508728 original size:40 final size:39
Alignment explanation
Indices: 32508563--32508746 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
32508553 AAATTGAATG
* * *
32508563 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
32508603 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
32508643 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
32508683 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
32508722 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
32508747 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:32508771 original size:80 final size:81
Alignment explanation
Indices: 32508603--32508791 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
32508593 GCTGGAAATT
* * * *
32508603 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
32508668 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
32508684 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
32508747 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
32508763 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
32508792 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:32513968 original size:4 final size:4
Alignment explanation
Indices: 32513934--32513958 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
32513924 ATGTACATGC
32513934 AATG AATG AATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG A
32513959 CAAATGAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:32513979 original size:22 final size:22
Alignment explanation
Indices: 32513938--32513992 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32513928 ACATGCAATG
* *
32513938 AATGAATGAATGAATGAATGACA
1 AATGAATG-TTGAATAAATGACA
*
32513961 AATGAATGTTGAATAAATGACG
1 AATGAATGTTGAATAAATGACA
32513983 AATGAATGTT
1 AATGAATGTT
32513993 AGTCATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:32517923 original size:25 final size:25
Alignment explanation
Indices: 32517890--32517938 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
32517880 AGGTGTATAC
* *
32517890 ATAGTATTAAAAATATGTACATAAT
1 ATAGCATTAAAAATATATACATAAT
32517915 ATAGCATTAAAAATATATACATAA
1 ATAGCATTAAAAATATATACATAA
32517939 GATAATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (25 bp):
ATAGCATTAAAAATATATACATAAT
Found at i:32518168 original size:23 final size:24
Alignment explanation
Indices: 32518142--32518186 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
32518132 TATATATATT
32518142 AAAAATAAATACAT-AATAAAATC
1 AAAAATAAATACATAAATAAAATC
* **
32518165 AAAAGTATGTACATAAATAAAA
1 AAAAATAAATACATAAATAAAA
32518187 ATAACATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (24 bp):
AAAAATAAATACATAAATAAAATC
Found at i:32518845 original size:37 final size:37
Alignment explanation
Indices: 32518769--32518846 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
32518759 CCAACCCCAG
* * *
32518769 CCCACTAACTTAATAATCCAAGCCCAACATAGACCAA
1 CCCACTAACTTAATAATCCAAACCCAACACAAACCAA
* * *
32518806 CCCACTAACTTAATATTTCAAACCCAACACAAACTAA
1 CCCACTAACTTAATAATCCAAACCCAACACAAACCAA
32518843 CCCA
1 CCCA
32518847 TCCCACTAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.44, C:0.36, G:0.03, T:0.18
Consensus pattern (37 bp):
CCCACTAACTTAATAATCCAAACCCAACACAAACCAA
Found at i:32518886 original size:40 final size:41
Alignment explanation
Indices: 32518806--32518886 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
32518796 CATAGACCAA
* *
32518806 CCCACTAACTTAATATTTCAAACCCAACACAAACTAACCCAT
1 CCCACTAACTTAACATTTC-AACCAAACACAAACTAACCCAT
*
32518848 CCCACTAACTTAACATTTC-ACCAAACACAAATTAACCCA
1 CCCACTAACTTAACATTTCAACCAAACACAAACTAACCCA
32518887 CAACAAACAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 18 0.50
42 18 0.50
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (41 bp):
CCCACTAACTTAACATTTCAACCAAACACAAACTAACCCAT
Found at i:32519507 original size:30 final size:30
Alignment explanation
Indices: 32519455--32519595 Score: 135
Period size: 30 Copynumber: 4.7 Consensus size: 30
32519445 TTTTTAAAAA
* *
32519455 TTTA-GGGTCAAATTGTAATTTAAGGAAAG
1 TTTAGGGGTCAAAATGAAATTTAAGGAAAG
** * **
32519484 TTTAGGGGTTGAAGTGAAATTTAAATAAAG
1 TTTAGGGGTCAAAATGAAATTTAAGGAAAG
32519514 TTTAGGGGTCAAAATGAAATTT-AGGAAAGG
1 TTTAGGGGTCAAAATGAAATTTAAGGAAA-G
* * *
32519544 TTTAGGTGTCAAAAT-ACAATTTATGAAAAG
1 TTTAGGGGTCAAAATGA-AATTTAAGGAAAG
* *
32519574 TTTAAGGGTCAAAATGCAATTT
1 TTTAGGGGTCAAAATGAAATTT
32519596 TTTTATTTTT
Statistics
Matches: 90, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
29 9 0.10
30 77 0.86
31 4 0.04
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (30 bp):
TTTAGGGGTCAAAATGAAATTTAAGGAAAG
Found at i:32520284 original size:32 final size:32
Alignment explanation
Indices: 32520245--32520305 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
32520235 TTAGATATTG
32520245 ATTATGTTTCAAACTTGTTAGATATTGAATTT
1 ATTATGTTTCAAACTTGTTAGATATTGAATTT
* * *
32520277 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAACTTGTTAGATATTGAA
32520306 ATGATTGGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAACTTGTTAGATATTGAATTT
Found at i:32522272 original size:49 final size:49
Alignment explanation
Indices: 32522185--32522426 Score: 412
Period size: 49 Copynumber: 4.9 Consensus size: 49
32522175 ATTCACATTA
* * * * *
32522185 GCCATTCGGCTTTACCACATATACATATACACTTTCACATTCATCACGTCG
1 GCCATTAGGCCTTATCACATAT--ATATACATTTTCACATTCATCACATCG
32522236 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
32522285 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
*
32522334 GCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
32522383 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCA
32522427 TACATTTTCA
Statistics
Matches: 184, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 165 0.90
51 19 0.10
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCG
Found at i:32522348 original size:98 final size:98
Alignment explanation
Indices: 32522185--32522634 Score: 531
Period size: 98 Copynumber: 4.4 Consensus size: 98
32522175 ATTCACATTA
* * * * *
32522185 GCCATTCGGCTTTACCACATATACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTATCACATAT--ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTA
*
32522250 TCACATATATATACATTTTCACATTCATCACATCG
64 TCACATATATATACAGTTTCACATTCATCACATCG
32522285 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATC
32522350 ACATATATATACAGTTTCACATTCATCACATCG
66 ACATATATATACAGTTTCACATTCATCACATCG
***
32522383 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCATACATTTTCACATTCATCACG
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC--ACATCGGC-CA-T--T-A--
* * * ** ** * *
32522448 TCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCG
57 --GGCC-TTA----TCA-CATATATATACAGTTTCACAT--TCATCACATCG
*
32522500 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATC
1 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATC
*
32522565 ACATATATATACATTTTCACATTCATCACATCG
66 ACATATATATACAGTTTCACATTCATCACATCG
32522598 GCCATTAGGCCTTATCACATATATATACATTTTCACA
1 GCCATTAGGCCTTATCACATATATATACATTTTCACA
32522635 AATTTTGATA
Statistics
Matches: 300, Mismatches: 31, Indels: 40
0.81 0.08 0.11
Matches are distributed among these distances:
98 163 0.54
100 38 0.13
101 4 0.01
102 1 0.00
104 1 0.00
105 4 0.01
106 4 0.01
109 4 0.01
110 4 0.01
111 1 0.00
113 1 0.00
114 4 0.01
115 18 0.06
117 53 0.18
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (98 bp):
GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATC
ACATATATATACAGTTTCACATTCATCACATCG
Found at i:32522431 original size:19 final size:19
Alignment explanation
Indices: 32522407--32522445 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32522397 TCACATATAT
32522407 ATACATTTTCACATTCATC
1 ATACATTTTCACATTCATC
32522426 ATACATTTTCACATTCATC
1 ATACATTTTCACATTCATC
32522445 A
1 A
32522446 CGTCGGCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (19 bp):
ATACATTTTCACATTCATC
Found at i:32522438 original size:68 final size:68
Alignment explanation
Indices: 32522358--32522494 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
32522348 TCACATATAT
32522358 ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32522423 ATC
66 ATC
* *
32522426 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32522491 ATC
66 ATC
32522494 A
1 A
32522495 CGTCGGCCAT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (68 bp):
ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATC
Found at i:32522452 original size:117 final size:117
Alignment explanation
Indices: 32522309--32522543 Score: 443
Period size: 117 Copynumber: 2.0 Consensus size: 117
32522299 TCACATATAT
32522309 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
32522374 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
* *
32522426 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
*
32522491 ATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
32522543 A
1 A
32522544 CGTCGGCCAT
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.35
Consensus pattern (117 bp):
ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
Found at i:32522480 original size:49 final size:49
Alignment explanation
Indices: 32522426--32522634 Score: 409
Period size: 49 Copynumber: 4.3 Consensus size: 49
32522416 CACATTCATC
32522426 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
32522475 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
32522524 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
*
32522573 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
32522622 ATACATTTTCACA
1 ATACATTTTCACA
32522635 AATTTTGATA
Statistics
Matches: 159, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 159 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (49 bp):
ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
Found at i:32522536 original size:166 final size:166
Alignment explanation
Indices: 32522260--32522592 Score: 630
Period size: 166 Copynumber: 2.0 Consensus size: 166
32522250 TCACATATAT
32522260 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32522325 ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
32522390 GGCCTTATCACATATATATACATTTTCACATTCATC
131 GGCCTTATCACATATATATACATTTTCACATTCATC
*
32522426 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
* * *
32522491 ATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTA
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
32522556 GGCCTTATCACATATATATACATTTTCACATTCATC
131 GGCCTTATCACATATATATACATTTTCACATTCATC
32522592 A
1 A
32522593 CATCGGCCAT
Statistics
Matches: 163, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 163 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.35
Consensus pattern (166 bp):
ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATATACATTTTCACATTCATC
Found at i:32522588 original size:215 final size:215
Alignment explanation
Indices: 32522211--32522634 Score: 812
Period size: 215 Copynumber: 2.0 Consensus size: 215
32522201 ACATATACAT
32522211 ATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32522276 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTA
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTA
32522341 GGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
131 GGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
32522406 TATACATTTTCACATTCATC
196 TATACATTTTCACATTCATC
*
32522426 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
* *
32522491 ATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTA
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTA
*
32522556 GGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
131 GGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
32522621 TATACATTTTCACA
196 TATACATTTTCACA
32522635 AATTTTGATA
Statistics
Matches: 205, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
215 205 1.00
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.35
Consensus pattern (215 bp):
ATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TATACATTTTCACATTCATC
Found at i:32524984 original size:25 final size:26
Alignment explanation
Indices: 32524942--32524998 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
32524932 GGTTAAAGGA
*
32524942 ATTCGCACACATACAGTGC-CTCTAATC
1 ATTCACACACATA-AGTGCTCT-TAATC
*
32524969 ATTCACACACAT-AGTGCTCTTATTC
1 ATTCACACACATAAGTGCTCTTAATC
32524994 ATTCA
1 ATTCA
32524999 TTATTACACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 14 0.52
26 2 0.07
27 11 0.41
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (26 bp):
ATTCACACACATAAGTGCTCTTAATC
Found at i:32525206 original size:40 final size:40
Alignment explanation
Indices: 32525158--32525606 Score: 673
Period size: 40 Copynumber: 11.2 Consensus size: 40
32525148 GCCCGAATAC
* * * *
32525158 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* * * ** *
32525198 ATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
32525238 ATATCACTAGCACGAATGCTCTTCGGAATCTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGA-CTTAGCCCGGAT
* * *
32525279 ACACCACTAGCACGAATGCTCTTCGGAACTTAACCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525319 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525359 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525399 ACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525439 ACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525479 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
* *
32525519 ATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525559 ACATCACTAGCACGAATGCTCTTCGGGATTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
*
32525599 ATATCACT
1 ACATCACT
32525607 CTCAATTCTC
Statistics
Matches: 376, Mismatches: 32, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
40 340 0.90
41 36 0.10
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:32526993 original size:13 final size:13
Alignment explanation
Indices: 32526975--32526999 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32526965 TAATGGTATA
32526975 TTGAATCCATGAT
1 TTGAATCCATGAT
32526988 TTGAATCCATGA
1 TTGAATCCATGA
32527000 AAATCTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:32528325 original size:47 final size:47
Alignment explanation
Indices: 32528256--32528425 Score: 297
Period size: 47 Copynumber: 3.6 Consensus size: 47
32528246 AACAGCTCGT
32528256 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32528303 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32528350 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
32528397 AGTGTA-ATTATGTGGTAAAGCCGAATGGC
1 AGTGTATA-TATGTGATAAGGCCTAATGGC
32528426 TAATGTGAAA
Statistics
Matches: 119, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.01
47 118 0.99
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32528512 original size:48 final size:48
Alignment explanation
Indices: 32528405--32528678 Score: 458
Period size: 48 Copynumber: 5.6 Consensus size: 48
32528395 AAAGTGTAAT
* *
32528405 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTA
1 TATGGGGTAAAGCCGAATGGCTAATGTG-AA-ATACATGTGTGATATGTA
*
32528455 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGGGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
32528503 TATGGGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGGGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
32528551 TATGGGGTAAAGCTGAATGGCTAATGTGAAATATATATGTGTGATATGTA
1 TATGGGGTAAAGCCGAATGGCTAATGTG-AA-ATACATGTGTGATATGTA
*
32528601 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGGGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
32528649 TATGGGGTAAAGCCGAATGGCTAATGTGAA
1 TATGGGGTAAAGCCGAATGGCTAATGTGAA
32528679 TGTTGTAACA
Statistics
Matches: 214, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
48 137 0.64
49 6 0.03
50 71 0.33
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
TATGGGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:32528522 original size:98 final size:97
Alignment explanation
Indices: 32528405--32528679 Score: 471
Period size: 98 Copynumber: 2.8 Consensus size: 97
32528395 AAAGTGTAAT
* *
32528405 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATACATGTGTGATATGTATATGGGGTAAAGCCG
32528470 AATGGCTAATGTGAA-ATACATGTGTGATATGTA
64 AATGGCTAATGTGAATATACATGTGTGATATGTA
* *
32528503 TATGGGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCTGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAA
*
32528568 TGGCTAATGTGAAATATATATGTGTGATATGTA
66 TGGCTAATGTG-AATATACATGTGTGATATGTA
32528601 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAA
32528666 TGGCTAATGTGAAT
66 TGGCTAATGTGAAT
32528680 GTTGTAACAT
Statistics
Matches: 168, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
96 43 0.26
97 7 0.04
98 118 0.70
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.31
Consensus pattern (97 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAA
TGGCTAATGTGAATATACATGTGTGATATGTA
Found at i:32528569 original size:146 final size:146
Alignment explanation
Indices: 32528405--32528678 Score: 530
Period size: 146 Copynumber: 1.9 Consensus size: 146
32528395 AAAGTGTAAT
*
32528405 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATGGGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
32528470 AATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAATGGCTAATGTGAAAT
66 AATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAATGGCTAATGTGAAAT
32528535 ACATGTGTGATATGTA
131 ACATGTGTGATATGTA
*
32528551 TATGGGGTAAAGCTGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATGGGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
32528616 AATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAATGGCTAATGTGAA
66 AATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAATGGCTAATGTGAA
32528679 TGTTGTAACA
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
146 126 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (146 bp):
TATGGGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
AATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAATGGCTAATGTGAAAT
ACATGTGTGATATGTA
Found at i:32528785 original size:37 final size:37
Alignment explanation
Indices: 32528723--32528919 Score: 340
Period size: 37 Copynumber: 5.3 Consensus size: 37
32528713 GGAAATATAT
* *
32528723 TCCGGGTGAGAGCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32528760 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32528797 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32528834 TCCGCGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32528871 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32528908 TTCGGGTAAGAC
1 TCCGGGTAAGAC
32528920 TTCGTAATAA
Statistics
Matches: 152, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 152 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32530858 original size:40 final size:40
Alignment explanation
Indices: 32530814--32531101 Score: 368
Period size: 40 Copynumber: 7.2 Consensus size: 40
32530804 GAGAATTGAG
32530814 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
*
32530854 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
* * *
32530894 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCTTGCC
1 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
*
32530934 AGTGATGTATCCGGACTAAGTT-TCGAAGAGCATTCGT-TT
1 AGTGATGTATCCGGACTAAGTTCT-GAAGAGCATTCGTGCT
32530973 CAGTGATGTATCCGGACTAAGTT-TCGAAGAGCATTCGTGCT
1 -AGTGATGTATCCGGACTAAGTTCT-GAAGAGCATTCGTGCT
* *
32531014 AGTGATGTATCCGGACTAAGTTCTGAAGGGCATTTGTGC-
1 AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
* * * * * * * *
32531053 CGATGTTATATCCGGGCTAAATCCCGAAGGGCATTCGTGCT
1 AG-TGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
*
32531094 GGTGATGT
1 AGTGATGT
32531102 GTATTCGGGC
Statistics
Matches: 221, Mismatches: 21, Indels: 12
0.87 0.08 0.05
Matches are distributed among these distances:
39 1 0.00
40 217 0.98
41 3 0.01
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCT
Found at i:32532932 original size:13 final size:13
Alignment explanation
Indices: 32532914--32532938 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32532904 TAATGGTATA
32532914 TTGAATCCATGAT
1 TTGAATCCATGAT
32532927 TTGAATCCATGA
1 TTGAATCCATGA
32532939 AAATCTAGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:32534264 original size:47 final size:47
Alignment explanation
Indices: 32534195--32534317 Score: 203
Period size: 47 Copynumber: 2.6 Consensus size: 47
32534185 AACAGCTCGT
32534195 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32534242 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
32534289 AGTGTA-ATTATGTGGTAAAGCCGAATGGC
1 AGTGTATA-TATGTGATAAGGCCTAATGGC
32534318 TAATGTGAAA
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.01
47 71 0.99
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32534404 original size:48 final size:48
Alignment explanation
Indices: 32534297--32534550 Score: 445
Period size: 48 Copynumber: 5.2 Consensus size: 48
32534287 AAAGTGTAAT
*
32534297 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATACATGTGTGATATGTA
32534347 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
32534395 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
* *
32534443 TATGGGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATACATGTGTGATATGTA
32534493 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
32534541 TATGTGGTAA
1 TATGTGGTAA
32534551 TGTAACACCC
Statistics
Matches: 197, Mismatches: 5, Indels: 6
0.95 0.02 0.03
Matches are distributed among these distances:
48 119 0.60
49 6 0.03
50 72 0.37
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.32
Consensus pattern (48 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTA
Found at i:32534409 original size:98 final size:98
Alignment explanation
Indices: 32534297--32534550 Score: 449
Period size: 98 Copynumber: 2.6 Consensus size: 98
32534287 AAAGTGTAAT
*
32534297 TATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATACATGTGTGATATGTATATGTGGTAAAGCCG
32534362 AATGGCTAATGTG-AA-ATACATGTGTGATATGTA
64 AATGGCTAATGTGAAATATACATGTGTGATATGTA
*
32534395 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGGGGTAAAGCCGAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
*
32534460 TGGCTAATGTGAAATATATATGTGTGATATGTA
66 TGGCTAATGTGAAATATACATGTGTGATATGTA
32534493 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAA
1 TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAA
32534551 TGTAACACCC
Statistics
Matches: 150, Mismatches: 4, Indels: 4
0.95 0.03 0.03
Matches are distributed among these distances:
96 44 0.29
97 4 0.03
98 102 0.68
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.32
Consensus pattern (98 bp):
TATGTGGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAA
TGGCTAATGTGAAATATACATGTGTGATATGTA
Found at i:32536048 original size:79 final size:78
Alignment explanation
Indices: 32535963--32536133 Score: 261
Period size: 78 Copynumber: 2.2 Consensus size: 78
32535953 CTTCAGGACA
* **
32535963 TAGCCCGGTTATGGTAACCCGCACAAAGGCCTTCGGGACTTAACCCGGATATCACAATTTGCACA
1 TAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGG-CTTAACCCGGATATCACAATTTGCACA
32536028 ATTGCCTTCGGGCT
65 ATTGCCTTCGGGCT
* * ** *
32536042 TAGCCCGGATATCATAACTCTCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAA
1 TAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGCTTAACCCGGATATCACAATTTGCACAA
32536107 TTGCCTTCGGGCT
66 TTGCCTTCGGGCT
32536120 TAGCCCGGATATCA
1 TAGCCCGGATATCA
32536134 CTCGAACATT
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 54 0.64
79 30 0.36
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (78 bp):
TAGCCCGGATATCATAACCCGCACAAAGGCCTTCGGGCTTAACCCGGATATCACAATTTGCACAA
TTGCCTTCGGGCT
Found at i:32536067 original size:39 final size:39
Alignment explanation
Indices: 32535991--32536134 Score: 236
Period size: 39 Copynumber: 3.7 Consensus size: 39
32535981 CCGCACAAAG
*
32535991 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCACAATTTGCACAATT
* *
32536031 GCCTTCGGGCTTAGCCCGGATATCATAACTCT-CACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAA-TTTGCACAATT
32536070 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
32536109 GCCTTCGGGCTTAGCCCGGATATCAC
1 GCCTTCGGGCTTAGCCCGGATATCAC
32536135 TCGAACATTC
Statistics
Matches: 97, Mismatches: 5, Indels: 5
0.91 0.05 0.05
Matches are distributed among these distances:
38 2 0.02
39 84 0.87
40 11 0.11
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCACAATTTGCACAATT
Found at i:32537830 original size:48 final size:48
Alignment explanation
Indices: 32537774--32537990 Score: 398
Period size: 48 Copynumber: 4.5 Consensus size: 48
32537764 GGCTGTCACA
*
32537774 GGTAAAGCCGAATGGCTAATGTGAAATACATGGGTGATATGTATATGG
1 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGG
* *
32537822 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTCATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGG
*
32537870 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGT
1 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGG
32537918 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGG
1 GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGG
32537966 GGTAAAGCCGAATGGCTAATGTGAA
1 GGTAAAGCCGAATGGCTAATGTGAA
32537991 TGTTGTAACA
Statistics
Matches: 164, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 164 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (48 bp):
GGTAAAGCCGAATGGCTAATGTGAAATACATGTGTGATATGTATATGG
Found at i:32538085 original size:37 final size:37
Alignment explanation
Indices: 32538035--32538194 Score: 293
Period size: 37 Copynumber: 4.3 Consensus size: 37
32538025 GGAAATATAT
*
32538035 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32538072 TCCGGGTAAGACCCGATGACTACATGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32538109 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
32538146 TCCGGGTAAGACCCGATGACTACGTGTAGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
32538183 TCCGGGTAAGAC
1 TCCGGGTAAGAC
32538195 TTCGTAATAA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 119 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:32540961 original size:37 final size:36
Alignment explanation
Indices: 32540911--32540997 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
32540901 TACAAAGGCT
32540911 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
32540947 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
32540984 TCACCCGGAACATA
1 T-ACCCGG-ACATA
32540998 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:32541133 original size:49 final size:49
Alignment explanation
Indices: 32541061--32541385 Score: 569
Period size: 49 Copynumber: 6.6 Consensus size: 49
32541051 TCGACTTTAC
* *
32541061 CACATATACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTAT
1 CACATAT--ATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
32541112 CACATATATATACATTTTCACATTCATCACATAGGCCATTAGGCCTTAT
1 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
32541161 CACATATATATACACTTTCACATTCGTCACATCGGCCATTAGGCCTTAT
1 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
32541210 CACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTAT
1 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
32541259 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
*
32541308 CACATATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
32541357 CACATATATATACATTTTCACATTCATCA
1 CACATATATATACATTTTCACATTCATCA
32541386 TACATTTTCA
Statistics
Matches: 262, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
49 255 0.97
51 7 0.03
ACGTcount: A:0.31, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
CACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTAT
Found at i:32541237 original size:147 final size:147
Alignment explanation
Indices: 32541061--32541544 Score: 716
Period size: 147 Copynumber: 3.1 Consensus size: 147
32541051 TCGACTTTAC
*
32541061 CACATATACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACA
1 CACATAT--ATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACA
* *
32541126 TTTTCACATTCATCACATAGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCGTCAC
64 TTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
32541191 ATCGGCCATTAGGCCTTAT
129 ATCGGCCATTAGGCCTTAT
32541210 CACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATT
1 CACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATT
*
32541275 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACAT
66 TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
32541340 CGGCCATTAGGCCTTAT
131 CGGCCATTAGGCCTTAT
32541357 CACATATATATACATTTTCACATTCATCATACATTTTCACATTCATCACGTCGGCCATTAGGCCT
1 CACATATATATACA---T----TT--TC--ACA--TT--CA-T---CACGTCGGCCATTAGGCCT
*
32541422 TATCACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATAC
47 TATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
32541487 ATTTTCACATTCATCACGTCGGCCATTAGGCCTTAT
112 ACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
32541523 CACATATATATACATTTTCACA
1 CACATATATATACATTTTCACA
32541545 AATTTTGATA
Statistics
Matches: 309, Mismatches: 7, Indels: 32
0.89 0.02 0.09
Matches are distributed among these distances:
147 150 0.49
149 7 0.02
150 1 0.00
154 2 0.01
155 3 0.01
156 2 0.01
157 2 0.01
158 3 0.01
159 2 0.01
160 2 0.01
162 2 0.01
163 2 0.01
166 131 0.42
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.34
Consensus pattern (147 bp):
CACATATATATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATT
TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACAT
CGGCCATTAGGCCTTAT
Found at i:32541390 original size:19 final size:19
Alignment explanation
Indices: 32541366--32541404 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32541356 TCACATATAT
32541366 ATACATTTTCACATTCATC
1 ATACATTTTCACATTCATC
32541385 ATACATTTTCACATTCATC
1 ATACATTTTCACATTCATC
32541404 A
1 A
32541405 CGTCGGCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (19 bp):
ATACATTTTCACATTCATC
Found at i:32541397 original size:68 final size:68
Alignment explanation
Indices: 32541317--32541453 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
32541307 TCACATATAT
32541317 ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32541382 ATC
66 ATC
* *
32541385 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32541450 ATC
66 ATC
32541453 A
1 A
32541454 CGTCGGCCAT
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (68 bp):
ATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATC
Found at i:32541407 original size:166 final size:166
Alignment explanation
Indices: 32541219--32541544 Score: 625
Period size: 166 Copynumber: 2.0 Consensus size: 166
32541209 TCACATATAT
32541219 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
32541284 ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
32541349 GGCCTTATCACATATATATACATTTTCACATTCATC
131 GGCCTTATCACATATATATACATTTTCACATTCATC
32541385 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
* * *
32541450 ATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCACGTCGGCCATTA
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
32541515 GGCCTTATCACATATATATACATTTTCACA
131 GGCCTTATCACATATATATACATTTTCACA
32541545 AATTTTGATA
Statistics
Matches: 157, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
166 157 1.00
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (166 bp):
ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATATACATTTTCACATTCATC
Found at i:32541411 original size:117 final size:117
Alignment explanation
Indices: 32541268--32541502 Score: 443
Period size: 117 Copynumber: 2.0 Consensus size: 117
32541258 TCACATATAT
32541268 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
32541333 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
* *
32541385 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTC
1 ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
*
32541450 ATCACGTCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
66 ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
32541502 A
1 A
32541503 CGTCGGCCAT
Statistics
Matches: 115, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 115 1.00
ACGTcount: A:0.30, C:0.26, G:0.08, T:0.35
Consensus pattern (117 bp):
ATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAGTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACATATATATACATTTTCACATTCATC
Found at i:32541439 original size:49 final size:49
Alignment explanation
Indices: 32541385--32541544 Score: 320
Period size: 49 Copynumber: 3.3 Consensus size: 49
32541375 CACATTCATC
32541385 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
32541434 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
32541483 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
1 ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
32541532 ATACATTTTCACA
1 ATACATTTTCACA
32541545 AATTTTGATA
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 111 1.00
ACGTcount: A:0.29, C:0.26, G:0.09, T:0.35
Consensus pattern (49 bp):
ATACATTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATAT
Found at i:32543408 original size:34 final size:34
Alignment explanation
Indices: 32543365--32543433 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
32543355 AAATGCTCAA
32543365 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
1 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
32543399 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
1 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
32543433 G
1 G
32543434 TGAACAGCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.35
Consensus pattern (34 bp):
GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
Found at i:32544163 original size:14 final size:15
Alignment explanation
Indices: 32544144--32544176 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
32544134 CCAGAAAAGT
32544144 AAATCATTTTCC-AA
1 AAATCATTTTCCGAA
32544158 AAATCATTTTCCGAA
1 AAATCATTTTCCGAA
32544173 AAAT
1 AAAT
32544177 ATTATACTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.45, C:0.18, G:0.03, T:0.33
Consensus pattern (15 bp):
AAATCATTTTCCGAA
Found at i:32545844 original size:30 final size:30
Alignment explanation
Indices: 32545808--32545869 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
32545798 CTTAACAAGG
32545808 AAATGTCTCTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
*
32545838 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
32545868 AA
1 AA
32545870 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAC
Found at i:32546294 original size:10 final size:9
Alignment explanation
Indices: 32546279--32546429 Score: 57
Period size: 9 Copynumber: 16.8 Consensus size: 9
32546269 AGATTATTAT
32546279 TATAAATATA
1 TATAAA-ATA
32546289 TATAAAATA
1 TATAAAATA
**
32546298 T-TAATTTA
1 TATAAAATA
32546306 TA-AAAATA
1 TATAAAATA
*
32546314 GA-AAAATA
1 TATAAAATA
*
32546322 TATACAAT-
1 TATAAAATA
*
32546330 TA-AAAAAA
1 TATAAAATA
32546338 TATAAAA-A
1 TATAAAATA
*
32546346 GCGTATAATAT-
1 ---TATAAAATA
*
32546357 TTTGAAAAATA
1 TAT-A-AAATA
*
32546368 TATAAAAATC
1 TAT-AAAATA
**
32546378 TATAATCTA
1 TATAAAATA
*
32546387 TATAAAATTT
1 TATAAAA-TA
32546397 TATAAAAT-
1 TATAAAATA
32546405 TATAAAATA
1 TATAAAATA
* *
32546414 AATAAAAAA
1 TATAAAATA
32546423 TATAAAA
1 TATAAAA
32546430 GAACTAAAAA
Statistics
Matches: 104, Mismatches: 24, Indels: 27
0.67 0.15 0.17
Matches are distributed among these distances:
7 3 0.03
8 33 0.32
9 35 0.34
10 24 0.23
11 9 0.09
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
TATAAAATA
Found at i:32546393 original size:29 final size:29
Alignment explanation
Indices: 32546330--32546429 Score: 82
Period size: 30 Copynumber: 3.5 Consensus size: 29
32546320 TATATACAAT
* * *
32546330 TAAAAAAATATAAAAAGCGTATAATAT-TT
1 TAAAAATATATAAAAATC-TATAATATATA
*
32546359 TGAAAAATATATAAAAATCTATAATCTATA
1 T-AAAAATATATAAAAATCTATAATATATA
* * * *
32546389 TAAAATTTTAT-AAAAT-TATAAAATAAA
1 TAAAAATATATAAAAATCTATAATATATA
32546416 TAAAAA-ATATAAAA
1 TAAAAATATATAAAA
32546430 GAACTAAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
26 3 0.05
27 16 0.28
28 5 0.09
29 16 0.28
30 17 0.30
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAAATATATAAAAATCTATAATATATA
Found at i:32546421 original size:18 final size:18
Alignment explanation
Indices: 32546400--32546439 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32546390 AAAATTTTAT
* *
32546400 AAAATTATAAAATAAATA
1 AAAAATATAAAAGAAATA
*
32546418 AAAAATATAAAAGAACTA
1 AAAAATATAAAAGAAATA
32546436 AAAA
1 AAAA
32546440 GCACATCAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
AAAAATATAAAAGAAATA
Found at i:32546583 original size:23 final size:23
Alignment explanation
Indices: 32546525--32546584 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
32546515 TCTTAATGTG
**
32546525 ATTTTTTATATTTTTATTAATTTA
1 ATTTTTTA-ATTTTTATTAAAATA
32546549 ATTATTTT-ATTTTT-TTAAAATA
1 ATT-TTTTAATTTTTATTAAAATA
32546571 TATTTTTTAATTTT
1 -ATTTTTTAATTTT
32546585 AAAATAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
22 10 0.32
23 14 0.45
24 3 0.10
25 4 0.13
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
ATTTTTTAATTTTTATTAAAATA
Found at i:32551004 original size:22 final size:22
Alignment explanation
Indices: 32550978--32551022 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32550968 GTTGTGTGTG
32550978 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32551000 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32551022 T
1 T
32551023 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32555466 original size:22 final size:22
Alignment explanation
Indices: 32555438--32555482 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
32555428 AGGGGGAGTG
32555438 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32555460 TAGGAATATTTTGTAGATATTT
1 TAGGAATATTCTGTAAATATTT
32555482 T
1 T
32555483 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32560942 original size:25 final size:25
Alignment explanation
Indices: 32560914--32560994 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
32560904 TAAAGCTCAA
*
32560914 GAGAGCCATTAATCGAGAAGCTTAT
1 GAGAGCCATTAATCGGGAAGCTTAT
* * *
32560939 GAGAGCCA-AATATTGGGAAGCTCAT
1 GAGAGCCATTA-ATCGGGAAGCTTAT
*
32560964 GAGAGCCATATAA-CGGGATGCTTAT
1 GAGAGCCAT-TAATCGGGAAGCTTAT
*
32560989 AAGAGC
1 GAGAGC
32560995 TAAATAATGG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.02
25 41 0.93
26 1 0.02
27 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (25 bp):
GAGAGCCATTAATCGGGAAGCTTAT
Found at i:32560968 original size:50 final size:50
Alignment explanation
Indices: 32560906--32561006 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
32560896 CATAAATGTA
* *
32560906 AAGCTCAAGAGAGCCAT-TAATCGAGAAGCTTATGAGAGCCAAATATTGGG
1 AAGCTCAAGAGAGCCATATAA-CGAGAAGCTTATAAGAGCCAAATAATGGG
* * * *
32560956 AAGCTCATGAGAGCCATATAACGGGATGCTTATAAGAGCTAAATAATGGG
1 AAGCTCAAGAGAGCCATATAACGAGAAGCTTATAAGAGCCAAATAATGGG
32561006 A
1 A
32561007 TGCTTATAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
50 41 0.93
51 3 0.07
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.21
Consensus pattern (50 bp):
AAGCTCAAGAGAGCCATATAACGAGAAGCTTATAAGAGCCAAATAATGGG
Found at i:32561001 original size:25 final size:25
Alignment explanation
Indices: 32560973--32561031 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
32560963 TGAGAGCCAT
32560973 ATAACGGGATGCTTATAAGAGCTAA
1 ATAACGGGATGCTTATAAGAGCTAA
*
32560998 ATAATGGGATGCTTATAAGAGCTAA
1 ATAACGGGATGCTTATAAGAGCTAA
32561023 ATAACGGGA
1 ATAACGGGA
32561032 CGCTCTTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.24
Consensus pattern (25 bp):
ATAACGGGATGCTTATAAGAGCTAA
Done.