Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 115 of 328
Found at i:32561019 original size:50 final size:50
Alignment explanation
Indices: 32560906--32561031 Score: 130
Period size: 50 Copynumber: 2.5 Consensus size: 50
32560896 CATAAATGTA
* * *
32560906 AAGCTCA-AGAGAGCCAT-TAATCGAGAAGCTTATGAGAGCCAAATATTGGG
1 AAGCTCATA-AGAGCCATATAA-CGGGAAGCTTATAAGAGCCAAATAATGGG
* * *
32560956 AAGCTCATGAGAGCCATATAACGGGATGCTTATAAGAGCTAAATAATGGG
1 AAGCTCATAAGAGCCATATAACGGGAAGCTTATAAGAGCCAAATAATGGG
* * * *
32561006 ATGCTTATAAGAGCTAAATAACGGGA
1 AAGCTCATAAGAGCCATATAACGGGA
32561032 CGCTCTTGTG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
50 60 0.95
51 3 0.05
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (50 bp):
AAGCTCATAAGAGCCATATAACGGGAAGCTTATAAGAGCCAAATAATGGG
Found at i:32566614 original size:39 final size:39
Alignment explanation
Indices: 32566569--32566645 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
32566559 TGAAAAATGT
32566569 GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATGG
1 GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATGG
*
32566608 GTTCTTGTATTGTTTGGAGGGTTGGAGACCAAATGATG
1 GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATG
32566646 TAAGCATAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.22, C:0.08, G:0.35, T:0.35
Consensus pattern (39 bp):
GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATGG
Found at i:32570176 original size:42 final size:41
Alignment explanation
Indices: 32570099--32570185 Score: 156
Period size: 41 Copynumber: 2.1 Consensus size: 41
32570089 AAAAAACACT
* *
32570099 TTTGGTGAGAAGCTAACATTTTCGTCTTATCAAAAAAGTAC
1 TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
32570140 TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
1 TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
32570181 TTTGG
1 TTTGG
32570186 GCCAATTTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (41 bp):
TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
Found at i:32571159 original size:22 final size:22
Alignment explanation
Indices: 32571117--32571159 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32571107 CATAAAAAGG
*
32571117 GGAGGAGTTTGAATGGCATTTA
1 GGAGGAGTTTGAAGGGCATTTA
32571139 GGAGGAGTTT-AAGGGCTATTT
1 GGAGGAGTTTGAAGGGC-ATTT
32571160 TGAAATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.26, C:0.05, G:0.37, T:0.33
Consensus pattern (22 bp):
GGAGGAGTTTGAAGGGCATTTA
Found at i:32572696 original size:16 final size:16
Alignment explanation
Indices: 32572641--32572696 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 16
32572631 TTCCATGAAC
32572641 TTTTATTATATATTCAT
1 TTTTATTATAT-TTCAT
* *
32572658 TTTAATTCT-TTTC-T
1 TTTTATTATATTTCAT
*
32572672 TTTT-GTATATTTCAT
1 TTTTATTATATTTCAT
32572687 TTTTATTATA
1 TTTTATTATA
32572697 ATTATTGACA
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
13 2 0.07
14 8 0.27
15 8 0.27
16 5 0.17
17 7 0.23
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (16 bp):
TTTTATTATATTTCAT
Found at i:32575430 original size:49 final size:49
Alignment explanation
Indices: 32575353--32575544 Score: 249
Period size: 49 Copynumber: 3.9 Consensus size: 49
32575343 ACTATTGTGA
* * *
32575353 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGAAAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAGTT
* ** ** *
32575402 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAGT-T
**
32575452 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAGTT
* * *
32575501 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
32575545 TAGCTTCGGC
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
49 81 0.65
50 43 0.35
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAGTT
Found at i:32575520 original size:99 final size:99
Alignment explanation
Indices: 32575349--32575533 Score: 325
Period size: 99 Copynumber: 1.9 Consensus size: 99
32575339 ATGAACTATT
* *
32575349 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGAAAATTGGTCGCATGTGT
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAATTGGTCGCATGTGT
32575414 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
66 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
***
32575448 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCATGTGT
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAATTGGTCGCATGTGT
32575513 AGTACTAAGTGCAGGCTACTA
66 AGTACTAAGTGCAGGCTACTA
32575534 TGCGTACCAG
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 81 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (99 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAAAATTGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:32578533 original size:14 final size:15
Alignment explanation
Indices: 32578470--32578533 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 15
32578460 GTATCTTGGG
32578470 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
32578485 TTT-TTTATTCTGGG
1 TTTCTTTATTCTGGA
32578499 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
32578514 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
32578528 TTTCTT
1 TTTCTT
32578534 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
14 25 0.60
15 13 0.31
16 4 0.10
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:32580786 original size:50 final size:49
Alignment explanation
Indices: 32580659--32580846 Score: 210
Period size: 50 Copynumber: 3.9 Consensus size: 49
32580649 ATCTATTGTG
* *
32580659 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTAC--GTACC-GAAAT-T
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ACTGT
* **
32580705 --GTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT
*
32580752 GAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
1 -AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
* * * *
32580802 TGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
32580847 TAGCTTCGGC
Statistics
Matches: 122, Mismatches: 11, Indels: 15
0.82 0.07 0.10
Matches are distributed among these distances:
44 33 0.27
45 1 0.01
46 4 0.03
47 2 0.02
49 40 0.33
50 41 0.34
51 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (49 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGT
Found at i:32584417 original size:14 final size:15
Alignment explanation
Indices: 32584354--32584417 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 15
32584344 GTATCTTGGG
32584354 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
32584369 TTT-TTTATTCTGGG
1 TTTCTTTATTCTGGA
32584383 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
32584398 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
32584412 TTTCTT
1 TTTCTT
32584418 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
14 25 0.60
15 13 0.31
16 4 0.10
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:32586620 original size:49 final size:48
Alignment explanation
Indices: 32586543--32586735 Score: 260
Period size: 49 Copynumber: 3.9 Consensus size: 48
32586533 ACTATTGTGA
* *
32586543 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTT
* ** *
32586592 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GT-T
*
32586642 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTT
* * *
32586691 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
32586736 AGCTTCGGCT
Statistics
Matches: 126, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
48 1 0.01
49 82 0.65
50 42 0.33
51 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTT
Found at i:32586710 original size:99 final size:99
Alignment explanation
Indices: 32586539--32586723 Score: 327
Period size: 99 Copynumber: 1.9 Consensus size: 99
32586529 ATGAACTATT
*
32586539 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGT
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGT
32586604 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
66 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
* *
32586638 GTGAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTGGTCGCATGTG
1 GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAATTGGTCGCATGTG
32586702 TAGTACTAAGTGCAGGCTACTA
65 TAGTACTAAGTGCAGGCTACTA
32586724 TGCGTACCAG
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
99 81 0.99
100 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (99 bp):
GTGAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:32589007 original size:13 final size:13
Alignment explanation
Indices: 32588989--32589044 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
32588979 TAGATTTTTC
32588989 CTAAATATTATCA
1 CTAAATATTATCA
32589002 CTAAATAATT-T--
1 CTAAAT-ATTATCA
32589013 -TAAATATTATCA
1 CTAAATATTATCA
32589025 CTAAATATTATCA
1 CTAAATATTATCA
32589038 CTAAATA
1 CTAAATA
32589045 ATTCAAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
9 3 0.08
10 6 0.16
13 26 0.68
14 3 0.08
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:32595553 original size:29 final size:29
Alignment explanation
Indices: 32595511--32595569 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
32595501 GAAAAAGGAA
*
32595511 AAGCTCGTAGTTTTATTTGATCCTCAGTT
1 AAGCTCGTAGTTTTATTTGACCCTCAGTT
32595540 AAGCTCGTAGTTTTATTTGACCCTCAGTT
1 AAGCTCGTAGTTTTATTTGACCCTCAGTT
32595569 A
1 A
32595570 CTCCTTCTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (29 bp):
AAGCTCGTAGTTTTATTTGACCCTCAGTT
Found at i:32596264 original size:21 final size:20
Alignment explanation
Indices: 32596229--32596278 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
32596219 GGAAATATGA
* *
32596229 AAAATAAAATAAAATAAAAT
1 AAAATAAAAAAAAATAAAAG
**
32596249 AAAATAAAAAATAAATTTAAG
1 AAAATAAAAAA-AAATAAAAG
32596270 AAAATAAAA
1 AAAATAAAA
32596279 TAAATGGATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAAAAAAAATAAAAG
Found at i:32596264 original size:26 final size:26
Alignment explanation
Indices: 32596228--32596297 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 26
32596218 AGGAAATATG
32596228 AAAAATAAAATAAAATAAAATAAAATA
1 AAAAAT-AAATAAAATAAAATAAAATA
** *
32596255 AAAAATAAATTTAAGAAAATAAAATA
1 AAAAATAAATAAAATAAAATAAAATA
**
32596281 AATGGATAAATAAAATA
1 AA-AAATAAATAAAATA
32596298 TTTTTTAAGC
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 19 0.56
27 15 0.44
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.21
Consensus pattern (26 bp):
AAAAATAAATAAAATAAAATAAAATA
Found at i:32596297 original size:5 final size:5
Alignment explanation
Indices: 32596229--32596282 Score: 63
Period size: 5 Copynumber: 10.6 Consensus size: 5
32596219 GGAAATATGA
* ** *
32596229 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAA ATAAAT TTAAG AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT
32596280 AAA
1 AAA
32596283 TGGATAAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 37 0.93
6 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:32597127 original size:23 final size:23
Alignment explanation
Indices: 32597099--32597173 Score: 114
Period size: 23 Copynumber: 3.3 Consensus size: 23
32597089 TAGATTTTTC
32597099 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32597122 TTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
* *
32597145 CTAGATATTATCATTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32597168 CAAAAT
1 CTAAAT
32597174 TTTAAAATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.48, C:0.11, G:0.01, T:0.40
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:32599578 original size:292 final size:292
Alignment explanation
Indices: 32599054--32599642 Score: 1124
Period size: 292 Copynumber: 2.0 Consensus size: 292
32599044 ACACCTACCC
*
32599054 TGGATGAGTTGAGGGAATTGGTGCACAAGGTAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGT
1 TGGATGAGTTGAGGGAATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGT
32599119 AGGATATTTTAGGAAAAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAAC
66 AGGATATTTTAGGAAAAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAAC
32599184 AAATGCTTGGAATCATGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGCA
131 AAATGCTTGGAATCATGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGCA
* *
32599249 TTGCTAAAGGGGCTGTTTTTCCAGCTGTTTGATAAAATGTCAATGGGAGTGCTTCGAACGCTCTG
196 TTGCTAAAGAGACTGTTTTTCCAGCTGTTTGATAAAATGTCAATGGGAGTGCTTCGAACGCTCTG
32599314 CCAAGAATAAAGATCGGTGTGGCATAGAAAGA
261 CCAAGAATAAAGATCGGTGTGGCATAGAAAGA
32599346 TGGATGAGTTGAGGGAATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGT
1 TGGATGAGTTGAGGGAATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGT
*
32599411 AGGATGTTTTAGGAAAAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAAC
66 AGGATATTTTAGGAAAAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAAC
*
32599476 AAATGCTTGGCATCATGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGCA
131 AAATGCTTGGAATCATGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGCA
*
32599541 TTGCTAAAGAGACTGTTTTTCCAGCTGTTTGATAAAATGTCAATGGGAGTGCTTTGAACGCTCTG
196 TTGCTAAAGAGACTGTTTTTCCAGCTGTTTGATAAAATGTCAATGGGAGTGCTTCGAACGCTCTG
32599606 CCAAGAATAAAGATCGGTGTGGCATAGAAAGA
261 CCAAGAATAAAGATCGGTGTGGCATAGAAAGA
32599638 TGGAT
1 TGGAT
32599643 TTTACTTGTT
Statistics
Matches: 291, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
292 291 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (292 bp):
TGGATGAGTTGAGGGAATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGT
AGGATATTTTAGGAAAAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAAC
AAATGCTTGGAATCATGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGCA
TTGCTAAAGAGACTGTTTTTCCAGCTGTTTGATAAAATGTCAATGGGAGTGCTTCGAACGCTCTG
CCAAGAATAAAGATCGGTGTGGCATAGAAAGA
Found at i:32608755 original size:11 final size:11
Alignment explanation
Indices: 32608741--32608776 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
32608731 TTAAAATAAT
32608741 TTTTTATTTTA
1 TTTTTATTTTA
*
32608752 TTTTTATTTTC
1 TTTTTATTTTA
*
32608763 TTTTAATTTTA
1 TTTTTATTTTA
32608774 TTT
1 TTT
32608777 CATCCTTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:32608766 original size:16 final size:16
Alignment explanation
Indices: 32608742--32608776 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32608732 TAAAATAATT
*
32608742 TTTTATTTTATTTTTA
1 TTTTATTTTAATTTTA
*
32608758 TTTTCTTTTAATTTTA
1 TTTTATTTTAATTTTA
32608774 TTT
1 TTT
32608777 CATCCTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTATTTTAATTTTA
Found at i:32629239 original size:48 final size:48
Alignment explanation
Indices: 32629164--32629303 Score: 190
Period size: 48 Copynumber: 2.9 Consensus size: 48
32629154 AACATAGTAA
* * ** *
32629164 GATGCCAATGCCATATTCCAGATATGGTCTTACATGGGATCACATGTT
1 GATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCACAAATC
* *
32629212 GATGCCAATGCCATGTTCCAGACATGGTCTGACATGGGATCTCAAATC
1 GATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCACAAATC
* * *
32629260 GATGCCAATGCTATGTCCCAAACATGGTCTTACATGGGATCACA
1 GATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCACA
32629304 CATAACTCTA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (48 bp):
GATGCCAATGCCATGTTCCAGACATGGTCTTACATGGGATCACAAATC
Found at i:32643642 original size:25 final size:25
Alignment explanation
Indices: 32643607--32643657 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
32643597 CTTATCAACA
*
32643607 ATTTTTAGGGAATTTAAGTCCTCAT
1 ATTTTTAGGGAATTCAAGTCCTCAT
*
32643632 ATTTTTGGGGAATTCAAGTCCTCAT
1 ATTTTTAGGGAATTCAAGTCCTCAT
32643657 A
1 A
32643658 CATTCCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (25 bp):
ATTTTTAGGGAATTCAAGTCCTCAT
Found at i:32646200 original size:42 final size:44
Alignment explanation
Indices: 32646105--32646260 Score: 167
Period size: 43 Copynumber: 3.6 Consensus size: 44
32646095 GCTCGTAGAG
* * * *
32646105 TGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-ATTATCGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCACA-AATCGA
* * * ** *
32646148 TGCCACTGTCCTAGACAAGGTCTTACACG-AAATCGTATA-CGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGA
32646190 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGA
1 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGA
* *
32646234 TGCCAACGTCCCAGACGTGGTCTTACA
1 TGCCAATGTCCCAGACATGGTCTTACA
32646261 TGATAACACA
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 29 0.31
43 36 0.38
44 29 0.31
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (44 bp):
TGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGA
Found at i:32670878 original size:44 final size:43
Alignment explanation
Indices: 32670736--32670894 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
32670726 AGCTCGTACA
* * * *
32670736 ATGCCAATATCCCAGACTTGGTCTTACATGT-AATCAATTATTG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCAA-TATCG
* * * *
32670779 ATGCC-ACTATCCCAGATAGGGTCTTAGACG-AAATC-GTATACG
1 ATGCCAAC-ATCCCAGACATGGTCTTACACGTAAATCAATAT-CG
** *
32670821 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACATCCCAGACATGGTCTTACACGTAAATCA-ATATCG
* *
32670865 ATGCCAACATCCCAGACGTGGCCTTACACG
1 ATGCCAACATCCCAGACATGGTCTTACACG
32670895 ATAACACATA
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
41 3 0.03
42 25 0.28
43 32 0.36
44 28 0.31
45 2 0.02
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACATCCCAGACATGGTCTTACACGTAAATCAATATCG
Found at i:32673112 original size:30 final size:30
Alignment explanation
Indices: 32673038--32673100 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
32673028 CAATTTTCGT
* * *
32673038 AAGGAAGCCTTTGTAGTTATCTCTATTAAA
1 AAGGAAGCCTTTGTGGTGATCTCTAATAAA
32673068 AAGGAAGCCTTTGTGGTGATCTCTAATAAA
1 AAGGAAGCCTTTGTGGTGATCTCTAATAAA
32673098 AAG
1 AAG
32673101 AATGCTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.21, T:0.32
Consensus pattern (30 bp):
AAGGAAGCCTTTGTGGTGATCTCTAATAAA
Found at i:32674109 original size:33 final size:33
Alignment explanation
Indices: 32674067--32674132 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
32674057 AAGAACAGAG
*
32674067 TAAGAACAAATGACCATCCTATCTATAAAAGAT
1 TAAGAACAAATGACCATCATATCTATAAAAGAT
32674100 TAAGAACAAATGACCATCATATCTATAAAAGAT
1 TAAGAACAAATGACCATCATATCTATAAAAGAT
32674133 GTCCTACTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.50, C:0.17, G:0.09, T:0.24
Consensus pattern (33 bp):
TAAGAACAAATGACCATCATATCTATAAAAGAT
Found at i:32677281 original size:48 final size:48
Alignment explanation
Indices: 32677209--32677345 Score: 202
Period size: 48 Copynumber: 2.9 Consensus size: 48
32677199 CTTGCACTCT
32677209 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
* ** * **
32677257 AAGTGTCAATATCATGGCTTGAAGCCAAATTAATGAAGCTCGTACCCG
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
* *
32677305 AAGTACCAATATCATGGCCCAAAGCCAAATCAATGAAGCTC
1 AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTC
32677346 CTAATGACAT
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.19
Consensus pattern (48 bp):
AAGTGCCAATATCATGGCCCGAAGCCAAATCAATGAAGCTCACACCCG
Found at i:32682378 original size:48 final size:48
Alignment explanation
Indices: 32682303--32682497 Score: 273
Period size: 48 Copynumber: 4.1 Consensus size: 48
32682293 GCTCGGGAGT
* *
32682303 CTCGCACCCTAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
* * * * *
32682351 CTCACACCCGAAGTACCAATATCATGGCTCGAAGCCAAATCAATGAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
* * * *
32682399 CCCGCACCTGAAGTGCAAATGTCATGGCCCAAAGCCAAATCAATAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
* *
32682447 CTCGCACCCGAAGTTCCAATATCATGGCCCAAAGCCAAATCAATGAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
32682495 CTC
1 CTC
32682498 CTAATGACAT
Statistics
Matches: 127, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 127 1.00
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
Found at i:32682469 original size:96 final size:96
Alignment explanation
Indices: 32682305--32682495 Score: 303
Period size: 96 Copynumber: 2.0 Consensus size: 96
32682295 TCGGGAGTCT
* *
32682305 CGCACCCTAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAGCTCACACCCGAAGTACCAA
1 CGCACCCTAAGTGCAAATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTACCAA
* *
32682370 TATCATGGCTCGAAGCCAAATCAATGAAGCC
66 TATCATGGCCCAAAGCCAAATCAATGAAGCC
* * *
32682401 CGCA-CCTGAAGTGCAAATGTCATGGCCCAAAGCCAAATCAATAAAGCTCGCACCCGAAGTTCCA
1 CGCACCCT-AAGTGCAAATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTACCA
32682465 ATATCATGGCCCAAAGCCAAATCAATGAAGC
65 ATATCATGGCCCAAAGCCAAATCAATGAAGC
32682496 TCCTAATGAC
Statistics
Matches: 87, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
95 3 0.03
96 84 0.97
ACGTcount: A:0.37, C:0.30, G:0.17, T:0.16
Consensus pattern (96 bp):
CGCACCCTAAGTGCAAATATCATGGCCCAAAGCCAAATCAATAAAGCTCACACCCGAAGTACCAA
TATCATGGCCCAAAGCCAAATCAATGAAGCC
Found at i:32686267 original size:30 final size:30
Alignment explanation
Indices: 32686231--32686319 Score: 115
Period size: 30 Copynumber: 3.0 Consensus size: 30
32686221 GTTTCTGTAA
32686231 GGAAGCCTTTGTGGCTATCTCTATTAAAAT
1 GGAAGCCTTTGTGGCTATCTCTATTAAAAT
* * * * *
32686261 GGAAGCCCTTGTGGCGAACTTTGTTAAAAT
1 GGAAGCCTTTGTGGCTATCTCTATTAAAAT
* *
32686291 GGAAGCTTTTGTGGCTATCTCTAATAAAA
1 GGAAGCCTTTGTGGCTATCTCTATTAAAA
32686320 ATAATGCCTT
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (30 bp):
GGAAGCCTTTGTGGCTATCTCTATTAAAAT
Found at i:32692247 original size:25 final size:25
Alignment explanation
Indices: 32692193--32692248 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
32692183 ATCTAGAGTG
* * *
32692193 TTTTCATAGTATACTACCAACAGTA
1 TTTTCATAATATACTAACAACAATA
* *
32692218 ATTTCATAATATACTAACTACAATA
1 TTTTCATAATATACTAACAACAATA
32692243 TTTTCA
1 TTTTCA
32692249 GTTTAAACTT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.18, G:0.04, T:0.39
Consensus pattern (25 bp):
TTTTCATAATATACTAACAACAATA
Found at i:32697147 original size:6 final size:6
Alignment explanation
Indices: 32697124--32697176 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
32697114 CAGTCAGAAA
* * * * *
32697124 CAGATA CAGTTT CAGATT CAGATT CAAATC CAGATT CAGTTT CAGATT
1 CAGATT CAGATT CAGATT CAGATT CAGATT CAGATT CAGATT CAGATT
32697172 ACAGA
1 -CAGA
32697177 AACAGTTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
6 33 0.89
7 4 0.11
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (6 bp):
CAGATT
Found at i:32698022 original size:26 final size:27
Alignment explanation
Indices: 32697993--32698048 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
32697983 TCAATTGGAG
32697993 AAAAAG-GACTAAATCGCGTAAAATGC
1 AAAAAGTGACTAAATCGCGTAAAATGC
*
32698019 -AAAAGTTACTAAATCGCGTAAAATGC
1 AAAAAGTGACTAAATCGCGTAAAATGC
32698045 AAAA
1 AAAA
32698049 GTTGCATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (27 bp):
AAAAAGTGACTAAATCGCGTAAAATGC
Found at i:32698049 original size:26 final size:26
Alignment explanation
Indices: 32698000--32698051 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32697990 GAGAAAAAGG
32698000 ACTAAATCGCGTAAAATGCAAAAGTT
1 ACTAAATCGCGTAAAATGCAAAAGTT
32698026 ACTAAATCGCGTAAAATGCAAAAGTT
1 ACTAAATCGCGTAAAATGCAAAAGTT
32698052 GCATTTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (26 bp):
ACTAAATCGCGTAAAATGCAAAAGTT
Found at i:32704437 original size:33 final size:34
Alignment explanation
Indices: 32704400--32704466 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
32704390 AAAATAAAGT
* *
32704400 AAAATAAAATATTCGAATT-CCCCTAAATCCCAC
1 AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
32704433 AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
1 AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
32704467 TAATTCCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 17 0.55
34 14 0.45
ACGTcount: A:0.46, C:0.28, G:0.03, T:0.22
Consensus pattern (34 bp):
AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
Found at i:32706219 original size:42 final size:42
Alignment explanation
Indices: 32706134--32706289 Score: 145
Period size: 42 Copynumber: 3.7 Consensus size: 42
32706124 AGTACCACAC
* * ** * *
32706134 CAATGTCATATCCCAGATATGGTCTTACATGGGATCTCGTAT
1 CAATGTCATAGCCCAGATATGGTCTTACACGAAATATCATAT
* *
32706176 CAATG-CAATAGCCTAGCTATGGTCTTACACGAAATATCATAT
1 CAATGTC-ATAGCCCAGATATGGTCTTACACGAAATATCATAT
* * *
32706218 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCGTAAT
1 CAATGTCATAGCCCAGATATGGTCTTACACGAAATATCAT-AT
* * * *
32706261 -GATGCCATAACCCAAATATGGTCTTACAC
1 CAATGTCATAGCCCAGATATGGTCTTACAC
32706290 ATAGTCTCGG
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 90 0.96
43 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (42 bp):
CAATGTCATAGCCCAGATATGGTCTTACACGAAATATCATAT
Found at i:32706281 original size:84 final size:84
Alignment explanation
Indices: 32706134--32706289 Score: 215
Period size: 84 Copynumber: 1.9 Consensus size: 84
32706124 AGTACCACAC
* ** * * **
32706134 CAATGTCATATCCCAGATATGGTCTTACATGGGATCTCGTATCAATGCAATAGCCTAGCTATGGT
1 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCGTATCAATGCAATAACCCAAATATGGT
32706199 CTTACACGAAATATCATAT
66 CTTACACGAAATATCATAT
* *
32706218 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCGTAAT-GATGCCATAACCCAAATATGG
1 CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCGT-ATCAATGCAATAACCCAAATATGG
32706282 TCTTACAC
65 TCTTACAC
32706290 ATAGTCTCGG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
84 60 0.97
85 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.29
Consensus pattern (84 bp):
CAATGTCATATCCCAGATATGGTCTTACACGAAATCTCGTATCAATGCAATAACCCAAATATGGT
CTTACACGAAATATCATAT
Found at i:32719914 original size:37 final size:37
Alignment explanation
Indices: 32719862--32719951 Score: 144
Period size: 37 Copynumber: 2.4 Consensus size: 37
32719852 ATAAAAGAAG
32719862 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGA
1 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGA
* *
32719899 TCTTACCCGGTCATAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACATAATCTCCACACGTAGTCATCGGA
*
32719936 TCTCACCCGGAACATA
1 TCTTACCCGG-ACATA
32719952 TTCCAAGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
37 44 0.92
38 4 0.08
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACATAATCTCCACACGTAGTCATCGGA
Found at i:32720102 original size:49 final size:49
Alignment explanation
Indices: 32720047--32720376 Score: 507
Period size: 49 Copynumber: 6.7 Consensus size: 49
32720037 TTTTACATTA
* *
32720047 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
* *
32720096 GCCATTAGGCCTCATCGCATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
* *
32720145 GCCATTAGGCCTCATCGCATATACATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
* * *
32720194 GCCATTAGGCCTCATCACATATATATACATTTTCACATTCATCGCATCG
1 GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
* * * *
32720243 GCCATTAGGCCTTATCACATATATATACATTTTCACATTCATCGCATCG
1 GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
** *
32720292 GCCATTAGGCCTTGTCACATATACATACATTTTCACATTCATCACATCG
1 GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
*
32720341 GCCATTAGGCCTCATCACATATATATACATTTTCAC
1 GCCATTAGGCCTCATCACATATACATACATTTTCAC
32720377 GAATCTTGAT
Statistics
Matches: 267, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 267 1.00
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (49 bp):
GCCATTAGGCCTCATCACATATACATACATTTTCACATTCACCACATCG
Found at i:32727714 original size:56 final size:56
Alignment explanation
Indices: 32727628--32727795 Score: 336
Period size: 56 Copynumber: 3.0 Consensus size: 56
32727618 GACCATCCAT
32727628 ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
1 ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
32727684 ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
1 ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
32727740 ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
1 ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
32727796 GTTGCCAACT
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 112 1.00
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (56 bp):
ACGAACTATGAGCTCACCAAGACTACGAGCTCACCTACTAGCTCTTTACTCTGTAA
Found at i:32729589 original size:46 final size:46
Alignment explanation
Indices: 32729537--32729626 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
32729527 GAAGGAAATA
* *
32729537 AAAACCTAATATAATAGAGAAAATAAGTAAAACTAAAAATCTTAAT
1 AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAAATCTTAAT
* *
32729583 AAAACCTTATATAATAAAGAAAATAAATAAAACTAAAACTCTTA
1 AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAAATCTTA
32729627 TTGCAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.61, C:0.10, G:0.04, T:0.24
Consensus pattern (46 bp):
AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAAATCTTAAT
Found at i:32732366 original size:40 final size:40
Alignment explanation
Indices: 32732309--32732516 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
32732299 TGAATGAGAC
*
32732309 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * *
32732349 CTGGGCTAAGTCCCGAAGGCATTTATGCTAGCGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
** *
32732389 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTATAT
* * * ** *
32732429 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
* * * * * *
32732469 ACGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
32732509 CC-GGCTAA
1 CCGGGCTAA
32732517 ATTCCGAAGA
Statistics
Matches: 140, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 6 0.04
40 133 0.95
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
Found at i:32735672 original size:30 final size:30
Alignment explanation
Indices: 32735638--32735735 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
32735628 AGCTCACTCC
32735638 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
32735668 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
32735698 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
32735728 TAGCTCAT
1 TAGCTCAT
32735736 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:32736086 original size:17 final size:16
Alignment explanation
Indices: 32736062--32736093 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32736052 ATGTATTTGC
32736062 CAAATACATGAATGCA
1 CAAATACATGAATGCA
32736078 CAAAGTACATGAATGC
1 CAAA-TACATGAATGC
32736094 TTGGGTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (16 bp):
CAAATACATGAATGCA
Found at i:32737335 original size:30 final size:30
Alignment explanation
Indices: 32737301--32737398 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
32737291 AGCTCACTCC
32737301 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
32737331 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
32737361 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
32737391 TAGCTCAT
1 TAGCTCAT
32737399 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:32737749 original size:17 final size:16
Alignment explanation
Indices: 32737725--32737756 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32737715 ATGTATTTGC
32737725 CAAATACATGAATGCA
1 CAAATACATGAATGCA
32737741 CAAAGTACATGAATGC
1 CAAA-TACATGAATGC
32737757 TTGGGTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19
Consensus pattern (16 bp):
CAAATACATGAATGCA
Found at i:32739000 original size:30 final size:30
Alignment explanation
Indices: 32738966--32739063 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
32738956 AGCTCACTCC
32738966 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
32738996 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
32739026 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
32739056 TAGCTCAT
1 TAGCTCAT
32739064 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:32740664 original size:30 final size:30
Alignment explanation
Indices: 32740630--32740727 Score: 90
Period size: 30 Copynumber: 3.3 Consensus size: 30
32740620 AGCTCACTCC
32740630 TAGCTCATATTCAGCTCACGAGCTAAACCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
** * * * * *
32740660 TAGCTCAGCTTCAGCTTAGGAGTTTAATCT
1 TAGCTCATATTCAGCTCACGAGCTAAACCT
* * *
32740690 CAGCTCA-ACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
32740720 TAGCTCAT
1 TAGCTCAT
32740728 TTTAGTTTAA
Statistics
Matches: 50, Mismatches: 16, Indels: 3
0.72 0.23 0.04
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.30
Consensus pattern (30 bp):
TAGCTCATATTCAGCTCACGAGCTAAACCT
Found at i:32745340 original size:14 final size:14
Alignment explanation
Indices: 32745321--32745351 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32745311 ATATTTCATA
32745321 TATTTTAATAAAAT
1 TATTTTAATAAAAT
32745335 TATTTTAATAAAAT
1 TATTTTAATAAAAT
32745349 TAT
1 TAT
32745352 CTTGAACGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTAATAAAAT
Found at i:32745468 original size:16 final size:16
Alignment explanation
Indices: 32745447--32745477 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32745437 TTTAAATGAT
32745447 TTTTTTAAAATTTTTA
1 TTTTTTAAAATTTTTA
*
32745463 TTTTTTGAAATTTTT
1 TTTTTTAAAATTTTT
32745478 GAATTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTTTAAAATTTTTA
Found at i:32745525 original size:20 final size:18
Alignment explanation
Indices: 32745489--32745549 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
32745479 AATTTTATTC
* *
32745489 AATACTTTTAAAAATTTT
1 AATATTTTTCAAAATTTT
32745507 AATATTTTTCTACAAATTTAT
1 AATATTTTTC-A-AAATTT-T
*
32745528 AAT-TTTTTCAAAATTTA
1 AATATTTTTCAAAATTTT
32745545 AATAT
1 AATAT
32745550 ATATTATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 3 0.08
18 15 0.42
19 2 0.06
20 12 0.33
21 4 0.11
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTTTTCAAAATTTT
Found at i:32750669 original size:17 final size:17
Alignment explanation
Indices: 32750637--32750685 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
32750627 CGCACATCTA
*
32750637 CGAGCTCATTCAAAGATG
1 CGAGCTCA-CCAAAGATG
*
32750655 CGAGCTCAGCAAAGATG
1 CGAGCTCACCAAAGATG
32750672 CGAAGCTCACCAAA
1 CG-AGCTCACCAAA
32750686 TTTGCAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.36
18 18 0.64
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (17 bp):
CGAGCTCACCAAAGATG
Found at i:32751363 original size:26 final size:26
Alignment explanation
Indices: 32751334--32751384 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32751324 CTCATTTCCC
32751334 TTTTAAAATTTCTCATGTTATTTTTG
1 TTTTAAAATTTCTCATGTTATTTTTG
* * *
32751360 TTTTCATATTTCTCATTTTATTTTT
1 TTTTAAAATTTCTCATGTTATTTTT
32751385 AAATTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTTAAAATTTCTCATGTTATTTTTG
Found at i:32753021 original size:16 final size:16
Alignment explanation
Indices: 32753002--32753054 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
32752992 AATAGGACTA
32753002 TAATCGAATAGAGTTG
1 TAATCGAATAGAGTTG
* *
32753018 TAATTGAATAGAGTTA
1 TAATCGAATAGAGTTG
* *
32753034 TAATGGAATAGAATTG
1 TAATCGAATAGAGTTG
32753050 TAATC
1 TAATC
32753055 AGTAATTCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.34
Consensus pattern (16 bp):
TAATCGAATAGAGTTG
Found at i:32753027 original size:32 final size:32
Alignment explanation
Indices: 32752991--32753053 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
32752981 CAATGTAACG
*
32752991 GAATAG-GACTATAATCGAATAGAGTTGTAATT
1 GAATAGAG-CTATAATCGAATAGAATTGTAATT
* *
32753023 GAATAGAGTTATAATGGAATAGAATTGTAAT
1 GAATAGAGCTATAATCGAATAGAATTGTAAT
32753054 CAGTAATTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.43, C:0.03, G:0.22, T:0.32
Consensus pattern (32 bp):
GAATAGAGCTATAATCGAATAGAATTGTAATT
Found at i:32753122 original size:44 final size:46
Alignment explanation
Indices: 32753035--32753129 Score: 124
Period size: 44 Copynumber: 2.1 Consensus size: 46
32753025 ATAGAGTTAT
* *
32753035 AATGGAATAGAATTGTAATCAGTAATTCAATTATTTGGTTGAATAG
1 AATGAAATAGAACTGTAATCAGTAATTCAATTATTTGGTTGAATAG
* *
32753081 AATGAAATAGAACTGTAAT-AGT-ATT-ATTATATTTGGTTGAATGG
1 AATGAAATAGAACTGTAATCAGTAATTCAAT-TATTTGGTTGAATAG
32753125 AATGA
1 AATGA
32753130 TGTTGTAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 22 0.50
45 3 0.07
46 17 0.39
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (46 bp):
AATGAAATAGAACTGTAATCAGTAATTCAATTATTTGGTTGAATAG
Found at i:32756921 original size:31 final size:31
Alignment explanation
Indices: 32756886--32756946 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
32756876 AATTTTTTCG
*
32756886 TTAAAGTTAACAGTGTTAAAGGTAGAATAAC
1 TTAAAGTTAACAGTGTCAAAGGTAGAATAAC
*
32756917 TTAAAGTTAACGGTGTCAAAGGTAGAATAA
1 TTAAAGTTAACAGTGTCAAAGGTAGAATAA
32756947 TTTTTAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (31 bp):
TTAAAGTTAACAGTGTCAAAGGTAGAATAAC
Found at i:32761641 original size:47 final size:48
Alignment explanation
Indices: 32761519--32761698 Score: 205
Period size: 47 Copynumber: 3.8 Consensus size: 48
32761509 TGTAACCCGC
* * * *
32761519 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
*
32761565 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-A-TTCACAT
*
32761615 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-G-ATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATT-CACAT
*
32761659 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
32761699 TCAACCATTC
Statistics
Matches: 115, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 4 0.03
45 1 0.01
46 38 0.33
47 58 0.50
48 4 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
Found at i:32761687 original size:94 final size:93
Alignment explanation
Indices: 32761527--32761698 Score: 292
Period size: 94 Copynumber: 1.8 Consensus size: 93
32761517 GCCCATAAGT
* *
32761527 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
32761592 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32761620 GAACTCGGACTCAACTCAACGAGTTCGGAG-ATTCCACATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTCGG-GCATT-CACATCCATAAGTGAACTCGGACTCAACTC
32761684 AACGAGTTCGGATGC
64 AACGAGTTCGGATGC
32761699 TCAACCATTC
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
93 29 0.39
94 45 0.61
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32765171 original size:44 final size:44
Alignment explanation
Indices: 32765069--32765229 Score: 184
Period size: 46 Copynumber: 3.6 Consensus size: 44
32765059 GTCGATGCCG
* * *
32765069 TGTCCCAGACAGGTCTTACACT-GACACATGTAACCGT-GCTGACGCA
1 TGTCCCAGACATGTCTTACACTAG-CACATCT---CGTAGCCGACGCA
32765115 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
* * *
32765159 TGTCCCAGACATGTCTGACACTGGCTATCATCTCG-AGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-A-CATCTCGTA-GCCGACGCA
32765205 TGTCCCAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
32765230 CCTCGTCTCA
Statistics
Matches: 102, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
43 3 0.03
44 31 0.30
45 2 0.02
46 65 0.64
47 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATCTCGTAGCCGACGCA
Found at i:32765246 original size:46 final size:43
Alignment explanation
Indices: 32765112--32765274 Score: 166
Period size: 46 Copynumber: 3.6 Consensus size: 43
32765102 CCGTGCTGAC
*
32765112 GCATGTCCCAGACATGTCTTACACTAGCACATCTCGT-AGCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGC-CATCTC-TCAGCCGAT
* * *
32765156 GCATGTCCCAGACATGTCTGACACTGGCTATCATCTCGAGGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
*
32765202 GCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTCAATGCCGAT
1 GCATGTCCCAGACATGTCTTACACTAGCCATC-TCTC-A-GCCGAT
* *
32765248 GCCATGTCTCATACATGGTCTTACACT
1 G-CATGTCCCAGACAT-GTCTTACACT
32765275 GGCACACAAA
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
43 4 0.04
44 28 0.28
45 1 0.01
46 45 0.45
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.26
Consensus pattern (43 bp):
GCATGTCCCAGACATGTCTTACACTAGCCATCTCTCAGCCGAT
Found at i:32767845 original size:47 final size:48
Alignment explanation
Indices: 32767723--32767902 Score: 205
Period size: 47 Copynumber: 3.8 Consensus size: 48
32767713 TGTAACCCGC
* * * *
32767723 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
*
32767769 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATG-C-A-TTCACAT
*
32767819 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-G-ATTCCACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATT-CACAT
*
32767863 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
32767903 TCAACCATTC
Statistics
Matches: 115, Mismatches: 7, Indels: 21
0.80 0.05 0.15
Matches are distributed among these distances:
42 2 0.02
43 1 0.01
44 4 0.03
45 1 0.01
46 38 0.33
47 58 0.50
48 4 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCATTCACAT
Found at i:32767891 original size:94 final size:93
Alignment explanation
Indices: 32767731--32767902 Score: 292
Period size: 94 Copynumber: 1.8 Consensus size: 93
32767721 GCCCATAAGT
* *
32767731 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
32767796 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
32767824 GAACTCGGACTCAACTCAACGAGTTCGGAG-ATTCCACATCCATAAGTGAACTCGGACTCAACTC
1 GAACTCGGACTCAACTCAACGAGCTCGG-GCATT-CACATCCATAAGTGAACTCGGACTCAACTC
32767888 AACGAGTTCGGATGC
64 AACGAGTTCGGATGC
32767903 TCAACCATTC
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
93 29 0.39
94 45 0.61
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32770590 original size:19 final size:19
Alignment explanation
Indices: 32770566--32770656 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
32770556 AATCATATCT
*
32770566 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
32770585 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
32770603 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
32770620 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32770639 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
32770657 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32770624 original size:35 final size:37
Alignment explanation
Indices: 32770559--32770656 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
32770549 ATTACAAAAT
32770559 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
32770595 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
32770630 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
32770657 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:32770926 original size:43 final size:41
Alignment explanation
Indices: 32770879--32770987 Score: 130
Period size: 42 Copynumber: 2.5 Consensus size: 41
32770869 GTGGGAAAAG
*
32770879 CGCCGCTAAAAGTCATAACCTTTAGCAGCACTTTTCCTACAAA
1 CGCCGCTAAAA-T-ATAACCTTTAGCAGCACTTTTCCCACAAA
* *
32770922 CGCCGCTATAAA-ATACACCTTTAGCGGCGCTTTTCCCACAAA
1 CGCCGCTA-AAATATA-ACCTTTAGCAGCACTTTTCCCACAAA
32770964 CGCCGCTAAAGAATATAACCTTTA
1 CGCCGCT-AA-AATATAACCTTTA
32770988 AAAAAATTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
41 3 0.05
42 31 0.53
43 18 0.31
44 6 0.10
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (41 bp):
CGCCGCTAAAATATAACCTTTAGCAGCACTTTTCCCACAAA
Found at i:32771764 original size:23 final size:23
Alignment explanation
Indices: 32771733--32773122 Score: 1054
Period size: 23 Copynumber: 60.7 Consensus size: 23
32771723 AAATAAGTAC
*
32771733 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
32771756 TTAAGCACTTCAATTTACAACAT
1 TTAAACACTTCAATTTGCAGCAT
32771779 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32771802 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
** *
32771826 TT-AACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAT
*
32771848 TTAAACACCTCAATTAT--AGCGA-
1 TTAAACACTTCAATT-TGCAGC-AT
* * * *
32771870 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* ** *
32771893 ATAAACACTTCAATTTGCAATAC
1 TTAAACACTTCAATTTGCAGCAT
*
32771916 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32771939 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
32771962 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32771985 TCAAACACTTCAAATTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
32772009 TT-AACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
* ** *
32772032 TTTAACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAT
* *
32772055 TTAAATACCTCAATTAT--AGCGA-
1 TTAAACACTTCAATT-TGCAGC-AT
* * * *
32772077 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* * * *
32772100 CTAAACACTTCGATTTGCAGTAC
1 TTAAACACTTCAATTTGCAGCAT
*
32772123 TTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32772146 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
32772169 TTAAACACTTCAATTTGCAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772192 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
*
32772216 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772238 TTAAGCACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
* ** *
32772262 TT-TACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAT
* * *
32772284 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AT
* * * *
32772306 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* * *
32772329 CTAAACACTTCAATTTGCAGTAC
1 TTAAACACTTCAATTTGCAGCAT
* *
32772352 TTAAACACTTTAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
32772375 TTAAGCACATCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32772398 TTAGACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772421 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
*
32772445 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772467 TTAAGCACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
** *
32772491 TT-AACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAT
* * *
32772513 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AT
* * * *
32772535 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* *
32772558 CTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
32772581 TTAAGCACATCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32772604 TTAGACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772627 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
*
32772651 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772673 TTAAGCACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
** *
32772697 TT-AACA-TCTCAATTAACAACAT
1 TTAAACACT-TCAATTTGCAGCAT
* * *
32772719 TTATACACCTCAA-TTACAGCGA-
1 TTAAACACTTCAATTTGCAGC-AT
* * * *
32772741 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* ** *
32772764 CTAAACACTTCAATTTGCAATAC
1 TTAAACACTTCAATTTGCAGCAT
* *
32772787 TTAAACACTTCAATTGGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32772810 TTAAGCACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772833 TTAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772856 TCAAACACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
*
32772880 TT-AACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
*
32772902 TTAAGCACTTCAATTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
** *
32772926 TT-AACATCTT-AATTAACAACAT
1 TTAAACA-CTTCAATTTGCAGCAT
* * * *
32772948 TTATACACCTCAA-TTACAACGA-
1 TTAAACACTTCAATTTGCAGC-AT
* * * *
32772970 TAAAACA-TCTCAATGTCCAGCAA
1 TTAAACACT-TCAATTTGCAGCAT
* *
32772993 CTAAACACTTCAATTTGCAACAT
1 TTAAACACTTCAATTTGCAGCAT
* * *
32773016 TTAAGCACATCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32773039 TTAGACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32773062 TCAAACACTTCAATTTACAGCAT
1 TTAAACACTTCAATTTGCAGCAT
* *
32773085 TCAAACACTTCAGTTTGCAGCACT
1 TTAAACACTTCAATTTGCAGCA-T
*
32773109 TT-AACACCTCAATT
1 TTAAACACTTCAATT
32773123 AACAATATTT
Statistics
Matches: 1089, Mismatches: 211, Indels: 134
0.76 0.15 0.09
Matches are distributed among these distances:
21 2 0.00
22 121 0.11
23 917 0.84
24 49 0.04
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (23 bp):
TTAAACACTTCAATTTGCAGCAT
Found at i:32772372 original size:229 final size:228
Alignment explanation
Indices: 32771733--32773122 Score: 1410
Period size: 229 Copynumber: 6.1 Consensus size: 228
32771723 AAATAAGTAC
* *
32771733 TTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAACA-TTTAAACACTTCAATTTGC
1 TTAAACACTTCAATTTGCAGCATTTAAGCACTTCAATTTACAGCACTTT-AACACTTCAATTTGC
** ** * * * * * *
32771797 AGCATTCAAACA-CTTCAATTTGCAGCACTTT-AACATCTCAATTAACAAC-ATTTAAACACCTC
65 AGCATT-TTACATC-TCAATTAACAACA-TTTAAACACCTCAATT-ACAGCGACTAAAACATCTC
** * * * ** * * *
32771859 AAT-TATAGCGA-TAAA-ACATCTCAATGTCCAGCAAATAAACACTTCAATTTGCAATACTTAAA
126 AATGTCCAGCAACTAAACAC-T-TCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAA
* * * * *
32771921 CACTTCAATTTGCAACATTTAAGCACTTCAATTTACAGCA
189 CACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
* * * *
32771961 TTTAAACACTTCAATTTGCAGCATTCAAACACTTCAAATTGCAGCACTTTAACACTTCAATTTGC
1 -TTAAACACTTCAATTTGCAGCATTTAAGCACTTCAATTTACAGCACTTTAACACTTCAATTTGC
* *
32772026 AGCACTTTTAACATCTCAATTAACAACATTTAAATACCTCAATTATAGCGA-TAAAACATCTCAA
65 AGCA-TTTT-ACATCTCAATTAACAACATTTAAACACCTCAATTACAGCGACTAAAACATCTCAA
* * * * *
32772090 TGTCCAGCAACTAAACACTTCGATTTGCAGTACTTAAACACTTCAATTTGCAACATTTAAGCACT
128 TGTCCAGCAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAACACT
*
32772155 TCAATTTACAGCATTTAAACACTTCAATTTGCAGCA
193 TCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
32772191 TTCAAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTACAGCA-TTTAAGCACTTCAATTT
1 TT-AAACACTTCAATTTGCAGCA-TTTAAGCACTTCAATTTACAGCACTTTAA-CACTTCAATTT
*
32772254 GCAGCACTTTTACATCTCAATTAACAACATTTATACACCTCAATTACAGCGA-TAAAACATCTCA
63 GCAGCA-TTTTACATCTCAATTAACAACATTTAAACACCTCAATTACAGCGACTAAAACATCTCA
* * * * *
32772318 ATGTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTTTAATTTGCAACATTTAAGCAC
127 ATGTCCAGCAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAACAC
* * * *
32772383 ATCAATTTACAGCATTTAGACACTTCAATTTACAGCA
192 TTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
32772420 TTCAAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTACAGCA-TTTAAGCACTTCAATTT
1 TT-AAACACTTCAATTTGCAGCA-TTTAAGCACTTCAATTTACAGCACTTTAA-CACTTCAATTT
* *
32772483 GCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGA-TAAAACATCTCA
63 GCAGCA-TTTTACATCTCAATTAACAACATTTAAACACCTCAATTACAGCGACTAAAACATCTCA
* * * * *
32772547 ATGTCCAGCAACTAAACACTTCAATTTGCAACATTTAAGCACATCAATTTACAGCATTTAGACAC
127 ATGTCCAGCAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAACAC
32772612 TTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
192 TTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
* * * **
32772649 CTTTAACACTTCAATTTACAGCATTTAAGCACTTCAATTTGCAGCACTTTAACA-TCTCAATTAA
1 -TTAAACACTTCAATTTGCAGCATTTAAGCACTTCAATTTACAGCACTTTAACACT-TCAATTTG
* * * * * * *
32772713 CAACATTTATACACCTCAATT-ACAGCGA-TAAAACATCTCAATGTCCAGCAACT-AAACA-CTT
64 CAGCATTT-TACATCTCAATTAACAAC-ATTTAAACACCTCAAT-TACAGCGACTAAAACATC-T
* * * * * *
32772774 CAATTTGCA--ATACTTAAACACTTCAATTGGCAACATTTAAGCACTTCAATTTACAGCATTTAA
125 CAATGTCCAGCA-AC-TAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAA
32772837 ACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
188 ACACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
* * * **
32772878 CTTTAACACTTCAATTTACAGCATTTAAGCACTTCAATTTGCAGCACTTTAACATCTT-AATTAA
1 -TTAAACACTTCAATTTGCAGCATTTAAGCACTTCAATTTACAGCACTTTAACA-CTTCAATTTG
* * * * * *
32772942 CAACATTTATACACCTCAATT-ACAACGA-TAAAACATCTCAATGTCCAGCAACT-AAACA-CTT
64 CAGCATTT-TACATCTCAATTAACAAC-ATTTAAACACCTCAAT-TACAGCGACTAAAACATC-T
* * * ** * * * * * *
32773003 CAATTTGCAACATTTAAGCACATCAATTTACAGCATTTAGACACTTCAATTTACAGCATTCAAAC
125 CAATGTCCAGCAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAAC
*
32773068 ACTTCAATTTACAGCATTCAAACACTTCAGTTTGCAGCA
190 ACTTCAATTTACAGCATTCAAACACTTCAATTTGCAGCA
* *
32773107 CTTTAACACCTCAATT
1 -TTAAACACTTCAATT
32773123 AACAATATTT
Statistics
Matches: 1043, Mismatches: 91, Indels: 54
0.88 0.08 0.05
Matches are distributed among these distances:
227 1 0.00
228 27 0.03
229 832 0.80
230 169 0.16
231 12 0.01
232 2 0.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (228 bp):
TTAAACACTTCAATTTGCAGCATTTAAGCACTTCAATTTACAGCACTTTAACACTTCAATTTGCA
GCATTTTACATCTCAATTAACAACATTTAAACACCTCAATTACAGCGACTAAAACATCTCAATGT
CCAGCAACTAAACACTTCAATTTGCAGCATTTAAACACTTCAATTTACAACATTTAAACACTTCA
ATTTACAGCATTCAAACACTTCAATTTGCAGCA
Found at i:32772411 original size:206 final size:202
Alignment explanation
Indices: 32771731--32773123 Score: 1100
Period size: 206 Copynumber: 6.8 Consensus size: 202
32771721 CAAAATAAGT
* * *
32771731 ACTTAAACACTTCAATTTGCAACATTTAAGCACTTCAATTTACAACATTTAAACACTTCAATTTG
1 ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTA
* * *
32771796 CAGCATTCAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATTTAAACACCTCA
66 CAGCATTCAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAGCATTT-AACACTTCA
* ** * * *
32771860 A-TTATAGCGATAAAACATCTCAATGTCCAGCA-AATAAACACTTCAATT--TGCAATACTTAAA
129 ATTTACAGC-ATTTAACATCTCAAT-TACAGCATTA-AAACAC-TCAATTACAGC-A-AC-TAAA
32771921 CACTTCAATTTGCA-A
187 CACTTCAATTTGCAGA
* * * * * * *
32771936 CATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCATTCAAACACTTCAAATT
1 -ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTT
* * * * * *
32772001 GCAGCACTT-TAACACTTCAATTTGCAGCACTTTTAACA-TCTCAATTAACAACATTTAAATACC
65 ACAGCA-TTCAAACACTTCAATTTGCAGCAC-TTTAACACT-TCAATTTACAGCATTT-AACACT
* ** * * * * *
32772064 TCAA-TTATAGCGATAAAACATCTCAATGTCCAGCAACT-AAACACTTCGATTTGCAG-TACTTA
126 TCAATTTACAGC-ATTTAACATCTCAAT-TACAGC-ATTAAAACAC-TC-AATTACAGCAAC-TA
32772126 AACACTTCAATTTGCA-A
185 AACACTTCAATTTGCAGA
* * * * * *
32772143 CATTTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCATTCAAACACTTCAATTT
1 -ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTT
* * * * *
32772208 GCAGCACTT-TAACACTTCAATTTACAGCA-TTTAAGCACTTCAATTTGCAGCACTTTTACA-TC
65 ACAGCA-TTCAAACACTTCAATTTGCAGCACTTTAA-CACTTCAATTTACAGCA-TTTAACACT-
* * * *
32772270 TCAATTAACAACATTTATACACCTCAATTACAGCGA-TAAAACATCTCAATGTCCAGCAACTAAA
126 TCAATTTACAGCATTTA-ACATCTCAATTACAGC-ATTAAAACA-CTCAAT-TACAGCAACTAAA
*
32772334 CACTTCAATTTGCAGT
187 CACTTCAATTTGCAGA
* * * *
32772350 ACTTAAACACTTTAATTTGCAACATTTAAGCACATCAATTTACAGCATTTAGACACTTCAATTTA
1 ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTA
32772415 CAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAGCACTTCAA
66 CAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAA-CACTTCAA
* * * * *
32772480 TTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGA-TAAA-ACAT
130 TTTACAGCA-TTTAACATCTCAATT-ACAGCATTAAAACA-CTCAATTACAGCAACTAAACAC-T
* *
32772543 CTCAATGTCCAGCA
191 -TCAATTTGCAG-A
* * *
32772557 AC-TAAACACTTCAATTTGCAACATTTAAGCACATCAATTTACAGCATTTAGACACTTCAATTTA
1 ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTA
32772621 CAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAGCACTTCAA
66 CAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAA-CACTTCAA
* * * * *
32772686 TTTGCAGCACTTTAACATCTCAATTAACAACATTTATACACCTCAATTACAGCGA-TAAA-ACAT
130 TTTACAGCA-TTTAACATCTCAATT-ACAGCATTAAAACA-CTCAATTACAGCAACTAAACAC-T
* *
32772749 CTCAATGTCCAGCA
191 -TCAATTTGCAG-A
* * ** * *
32772763 AC-TAAACACTTCAATTTGCAATACTTAAACACTTCAATTGGCAACATTTAAGCACTTCAATTTA
1 ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTA
* * * *
32772827 CAGCATTTAAACACTTCAATTTACAGCA-TTCAAACACTTCAATTTGCAGCACTTTAACACTTCA
66 CAGCATTCAAACACTTCAATTTGCAGCACTT-TAACACTTCAATTTACAGCA-TTTAACACTTCA
* * * * ** *
32772891 ATTTACAGCATTTAAGCA-CTTCAATTTGCAGCACTT-TAACATCTTAATTAACAACATTTATAC
129 ATTTACAGCATTTAA-CATC-TCAA-TTACAGCA-TTAAAACA-CTCAATT-ACAGCAACTAAAC
* *
32772954 ACCTCAA-TT--ACA
188 ACTTCAATTTGCAGA
* * * * ** * * * *
32772966 ACGATAAA-ACATCTCAATGTCCAGCAACTAAACACTTCAATTTGCAACATTTAAGCACATCAAT
1 AC-TTAAACAC-T-TCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAAT
* * * * *
32773030 TTACAGCATTTAGACACTTCAATTTACAGCA-TTCAAACACTTCAATTTACAGCATTCAAACACT
63 TTACAGCATTCAAACACTTCAATTTGCAGCACTT-TAACACTTCAATTTACAGCATT-TAACACT
* * *
32773094 TCAGTTTGCAGCACTTTAACACCTCAATTA
126 TCAATTTACAGCA-TTTAACATCTCAATTA
32773124 ACAATATTTA
Statistics
Matches: 1038, Mismatches: 105, Indels: 89
0.84 0.09 0.07
Matches are distributed among these distances:
203 3 0.00
204 5 0.00
205 36 0.03
206 724 0.70
207 260 0.25
208 7 0.01
209 2 0.00
210 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.07, T:0.31
Consensus pattern (202 bp):
ACTTAAACACTTCAATTTGCAACATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTA
CAGCATTCAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAACACTTCAAT
TTACAGCATTTAACATCTCAATTACAGCATTAAAACACTCAATTACAGCAACTAAACACTTCAAT
TTGCAGA
Found at i:32775837 original size:29 final size:26
Alignment explanation
Indices: 32775793--32775855 Score: 65
Period size: 29 Copynumber: 2.3 Consensus size: 26
32775783 GCTAAAAATT
32775793 CTTTATTTTATTTT-AATATATATAAA
1 CTTTATTTTATTTTAAATA-ATATAAA
*
32775819 CTTTATTATTATCTCTTAAATAATTTAAA
1 CTTTATT-TTAT-T-TTAAATAATATAAA
*
32775848 CTATATTT
1 CTTTATTT
32775856 AATTATATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
26 7 0.23
27 4 0.13
28 2 0.06
29 14 0.45
30 4 0.13
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.56
Consensus pattern (26 bp):
CTTTATTTTATTTTAAATAATATAAA
Found at i:32776522 original size:21 final size:21
Alignment explanation
Indices: 32776498--32776561 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
32776488 AAACCTAACA
**
32776498 CTTAACCCATAACCCCTAAGT
1 CTTAACCCATAACCCCTAAAC
* *
32776519 CTTAAACCC-CAACCCTTAAAC
1 CTT-AACCCATAACCCCTAAAC
* *
32776540 CATAACCCATAATCCCTAAAC
1 CTTAACCCATAACCCCTAAAC
32776561 C
1 C
32776562 CATAATCCAT
Statistics
Matches: 33, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 5 0.15
21 23 0.70
22 5 0.15
ACGTcount: A:0.38, C:0.41, G:0.02, T:0.20
Consensus pattern (21 bp):
CTTAACCCATAACCCCTAAAC
Found at i:32776563 original size:15 final size:15
Alignment explanation
Indices: 32776529--32776576 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
32776519 CTTAAACCCC
* *
32776529 AACCCTTAAACCAT-
1 AACCCATAATCCATA
*
32776543 AACCCATAATCCCTA
1 AACCCATAATCCATA
32776558 AACCCATAATCCATA
1 AACCCATAATCCATA
32776573 AACC
1 AACC
32776577 TTAAAATAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 11 0.38
15 18 0.62
ACGTcount: A:0.44, C:0.38, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:32776581 original size:22 final size:21
Alignment explanation
Indices: 32776532--32776581 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
32776522 AAACCCCAAC
*
32776532 CCTTAAACCATAACCCATAAT
1 CCTTAAACCATAACCCATAAA
* *
32776553 CCCTAAACCCATAATCCATAAA
1 CCTTAAA-CCATAACCCATAAA
32776575 CCTTAAA
1 CCTTAAA
32776582 ATAGTAATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (21 bp):
CCTTAAACCATAACCCATAAA
Found at i:32776906 original size:22 final size:22
Alignment explanation
Indices: 32776862--32776906 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32776852 ACCTTAAACT
* *
32776862 ACCCTTAAACCATAATCCCTAA
1 ACCCATAAACCATAAACCCTAA
* *
32776884 ACCCATAACCCATAAACCTTAA
1 ACCCATAAACCATAAACCCTAA
32776906 A
1 A
32776907 ATAGTAACTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (22 bp):
ACCCATAAACCATAAACCCTAA
Found at i:32777264 original size:19 final size:19
Alignment explanation
Indices: 32777240--32777276 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
32777230 AAAATAAACC
32777240 AGTTAAACTATAAGTAAAT
1 AGTTAAACTATAAGTAAAT
32777259 AGTTAAACTATAAGTAAA
1 AGTTAAACTATAAGTAAA
32777277 CAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30
Consensus pattern (19 bp):
AGTTAAACTATAAGTAAAT
Found at i:32777538 original size:39 final size:40
Alignment explanation
Indices: 32777448--32777539 Score: 168
Period size: 40 Copynumber: 2.3 Consensus size: 40
32777438 ATCAAGCATT
*
32777448 AGCGCCGCTAAAGGTGTACCTATAGCGGCGTTTTTAAAAA
1 AGCGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAA
32777488 AGCGCCGCTAAAGGTGTACCTATAGCGGCATTTTT-AAAA
1 AGCGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAA
32777527 AGCGCCGCTAAAG
1 AGCGCCGCTAAAG
32777540 CCACTAAAAT
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 17 0.33
40 34 0.67
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (40 bp):
AGCGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAA
Found at i:32777626 original size:178 final size:178
Alignment explanation
Indices: 32777296--32777634 Score: 540
Period size: 178 Copynumber: 1.9 Consensus size: 178
32777286 TGTTTTTTGT
*
32777296 GGCGCTTTTTAAAAAACGCCGCTAAAGGTGTACCTATAGCGGCGTTTTTAAAAAGCGCCGCTAAA
1 GGCGCTTTTTAAAAAACGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAAGCGCCGCTAAA
* * *
32777361 GCCACTAAAAGCTCAATACAAAACGACGCCGTTTTGCAAAATTCTTTTGCGGCGTTTTTAGAAAA
66 GCCACTAAAAGCTCAATACAAAACGACGCCGTTTTACAAAACTCTTTTGCGGCGTTTCTAGAAAA
*
32777426 ACGCCGTTAAAGATCAAGCATTAGCGCCGCTAAAGGTGTACCTATAGC
131 ACGCCGCTAAAGATCAAGCATTAGCGCCGCTAAAGGTGTACCTATAGC
32777474 GGCG-TTTTTAAAAAAGCGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAAGCGCCGCTAA
1 GGCGCTTTTTAAAAAA-CGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAAGCGCCGCTAA
* *
32777538 AGCCACTAAAATG-TCAATACAAAACGACGGCGTTTTACAAAACTCTTTTGCGGCGCTTTCT-GG
65 AGCCACTAAAA-GCTCAATACAAAACGACGCCGTTTTACAAAACTCTTTTGCGGCG-TTTCTAGA
* * *
32777601 AAAACGCCGCTAAAGGTCGAGCATTAGCGGCGCT
128 AAAACGCCGCTAAAGATCAAGCATTAGCGCCGCT
32777635 TTTTAAAAAA
Statistics
Matches: 148, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
177 11 0.07
178 132 0.89
179 5 0.03
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (178 bp):
GGCGCTTTTTAAAAAACGCCGCTAAAGGTGTACCTATAGCGGCATTTTTAAAAAGCGCCGCTAAA
GCCACTAAAAGCTCAATACAAAACGACGCCGTTTTACAAAACTCTTTTGCGGCGTTTCTAGAAAA
ACGCCGCTAAAGATCAAGCATTAGCGCCGCTAAAGGTGTACCTATAGC
Found at i:32777632 original size:40 final size:40
Alignment explanation
Indices: 32777587--32777671 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
32777577 AAACTCTTTT
** *
32777587 GCGGCGCTTTCTGGAAAACGCCGCTAAAGGTCGAGCATTA
1 GCGGCGCTTTCTAAAAAACGCCGCTAAAGCTCGAGCATTA
* * * *
32777627 GCGGCGCTTTTTAAAAAACGCCGCTAATGCTCGATCTTTA
1 GCGGCGCTTTCTAAAAAACGCCGCTAAAGCTCGAGCATTA
32777667 GCGGC
1 GCGGC
32777672 ATTTTTCGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.24
Consensus pattern (40 bp):
GCGGCGCTTTCTAAAAAACGCCGCTAAAGCTCGAGCATTA
Found at i:32777700 original size:12 final size:12
Alignment explanation
Indices: 32777683--32777710 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32777673 TTTTTCGTTC
32777683 AAACGCCGCTAA
1 AAACGCCGCTAA
32777695 AAACGCCGCTAA
1 AAACGCCGCTAA
32777707 AAAC
1 AAAC
32777711 CTGTTTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.32, G:0.14, T:0.07
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:32778569 original size:13 final size:13
Alignment explanation
Indices: 32778551--32778576 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32778541 CTCTCTCAAC
32778551 AAAAAATTCAAAA
1 AAAAAATTCAAAA
32778564 AAAAAATTCAAAA
1 AAAAAATTCAAAA
32778577 TAATTTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAATTCAAAA
Found at i:32778609 original size:19 final size:19
Alignment explanation
Indices: 32778565--32778614 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
32778555 AATTCAAAAA
32778565 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
32778584 AATAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
32778603 AAAAATTTCAAA
1 AAAAA-TTCAAA
32778615 TTTTATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 4 0.15
19 17 0.63
20 6 0.22
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:32779182 original size:29 final size:27
Alignment explanation
Indices: 32779127--32779182 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 27
32779117 TACTATTTCA
* *
32779127 AATTTTAAAATTTAGTTTTTATACTTT
1 AATTTTAAAATTGAGTGTTTATACTTT
*
32779154 AATTTTGAAAGATTGAGTGTTTGTACTTT
1 AATTTT-AAA-ATTGAGTGTTTATACTTT
32779183 TTTTATTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.25
28 3 0.12
29 15 0.62
ACGTcount: A:0.30, C:0.04, G:0.12, T:0.54
Consensus pattern (27 bp):
AATTTTAAAATTGAGTGTTTATACTTT
Found at i:32779378 original size:12 final size:12
Alignment explanation
Indices: 32779352--32779390 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
32779342 TTTTTTTCAT
32779352 ATTTTAAATAAAA
1 ATTTTAAA-AAAA
32779365 ATTTTAAAAAAA
1 ATTTTAAAAAAA
* *
32779377 ATATGAAAAAAA
1 ATTTTAAAAAAA
32779389 AT
1 AT
32779391 AAAACTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (12 bp):
ATTTTAAAAAAA
Found at i:32780100 original size:14 final size:15
Alignment explanation
Indices: 32780073--32780104 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32780063 TTTTAGAATT
32780073 TTTTTAATATTTTTA
1 TTTTTAATATTTTTA
32780088 TTTTTAATA-TTTTA
1 TTTTTAATATTTTTA
32780102 TTT
1 TTT
32780105 GCCTTGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTAATATTTTTA
Found at i:32807539 original size:35 final size:35
Alignment explanation
Indices: 32807487--32807554 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
32807477 AGCAGTTGAT
* *
32807487 TTTCCTTTTATGTTTTTGGAAAATTAAAAATACCG
1 TTTCCTTTTATGGTTTTGGAAAACTAAAAATACCG
*
32807522 TTTCTTTTTATGGTTTTGGAAAACTAAAAATAC
1 TTTCCTTTTATGGTTTTGGAAAACTAAAAATAC
32807555 TCCACTTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTCCTTTTATGGTTTTGGAAAACTAAAAATACCG
Found at i:32812487 original size:14 final size:14
Alignment explanation
Indices: 32812468--32812504 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
32812458 TATAGTCCTA
32812468 GGGTAGAGAGCACC
1 GGGTAGAGAGCACC
*
32812482 GGGTAGAGAGTACC
1 GGGTAGAGAGCACC
*
32812496 GGGCAGAGA
1 GGGTAGAGA
32812505 TGCTAGTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.30, C:0.16, G:0.46, T:0.08
Consensus pattern (14 bp):
GGGTAGAGAGCACC
Found at i:32814301 original size:3 final size:3
Alignment explanation
Indices: 32814293--32814642 Score: 70
Period size: 3 Copynumber: 116.7 Consensus size: 3
32814283 GGGGAGAGTG
* *
32814293 TTA TTA TTA TTA TTA TTA TT- TTT TTA TTA CTT- TTA CTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA
* * * * * * *
32814336 CTA TATA CTA TTA CTGTG TTC TT- TT- TTA TTA TTA TTA GTA GTA CGTA
1 TTA T-TA TTA TTA -T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* * * * * ** *
32814383 ATA GTG TTT TTA TTA TT- TTA TTA TTA TTT TTA CCA TT- TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
32814429 TTA TTA TTT TTA TTA ATA -TA GTA TTA TT- TTC TT- TT- TTA -TA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * * * *
32814472 TTA TTA TTA TTA GCA CGTA -TG TTA TTA TTA TTA ATA -TA TCA TTG
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
32814516 TTA TTT TCTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT- TCTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA T-TA TTA
* * *
32814561 TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCA TCA TTT TCTA TTA
1 TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA T-TA TTA
* * *
32814607 TCA TTA ATA TGTCA TTTG TTCA TTA TTA TTA TTA TT
1 TTA TTA TTA T-T-A -TTA TT-A TTA TTA TTA TTA TT
32814643 TTTAACACTA
Statistics
Matches: 258, Mismatches: 55, Indels: 68
0.68 0.14 0.18
Matches are distributed among these distances:
2 33 0.13
3 193 0.75
4 25 0.10
5 5 0.02
6 2 0.01
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:32814414 original size:20 final size:20
Alignment explanation
Indices: 32814389--32814436 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
32814379 CGTAATAGTG
*
32814389 TTTTTATTATTTTATTATTA
1 TTTTTATTATTTTATTACTA
**
32814409 TTTTTACCATTTTATTACTA
1 TTTTTATTATTTTATTACTA
*
32814429 TTATTATT
1 TTTTTATT
32814437 TTTATTAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTATTATTTTATTACTA
Found at i:32814456 original size:26 final size:26
Alignment explanation
Indices: 32814400--32814464 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
32814390 TTTTATTATT
* * *
32814400 TTATTATTATTTTTACCATTTTATTA
1 TTATTATTATTTTTACCAATATAGTA
* **
32814426 CTATTATTATTTTTATTAATATAGTA
1 TTATTATTATTTTTACCAATATAGTA
*
32814452 TTATT-TTCTTTTT
1 TTATTATTATTTTT
32814465 TATATTGTTA
Statistics
Matches: 31, Mismatches: 8, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (26 bp):
TTATTATTATTTTTACCAATATAGTA
Found at i:32814712 original size:22 final size:21
Alignment explanation
Indices: 32814676--32814729 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
32814666 ATATTTACTT
* *
32814676 TTTTTAATATCATTACCATTA
1 TTTTTATTATCATTACCATAA
* *
32814697 TATTTTATTATTATTACTATAA
1 T-TTTTATTATCATTACCATAA
32814719 TTTTTATTATC
1 TTTTTATTATC
32814730 CGTCCTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTATTATCATTACCATAA
Found at i:32815172 original size:125 final size:125
Alignment explanation
Indices: 32814928--32815194 Score: 310
Period size: 125 Copynumber: 2.1 Consensus size: 125
32814918 TCGAGAAACT
* *
32814928 GTGTCCTAACGTACTGGGTTTCGATTTTTCGTTTGATCTAAGTAACTAATTATCCTTTTAAATTA
1 GTGTCCTAACGTACTGGGTTTCGATTTTCCGTTTGATCTAAATAACTAATTATCCTTTTAAATTA
* * * *
32814993 AAATACATGAGTTTTAAATAAAACAAAGGCAATATTCCGTATTTAGAAATTCGA-GTAGTC
66 AAATACATGAGTTTTAAATAAAACAAAGGCAATACTCCATATCTAGAAAGTCGAGGT-GTC
* * *
32815053 GTGTCCTAACGTACTGGGTTTTGATTTTCCGTTTGATCTAAATATCTGAA-TGTCCTTTTTAAAA
1 GTGTCCTAACGTACTGGGTTTCGATTTTCCGTTTGATCTAAATAACT-AATTATCC-TTTT-AAA
* * * * * * *
32815117 TTTAAATACATGAGTTTTAAATGAAATAGAAGGCAA-GCT-CATA-CTCGAAGGTCGAGGTGTT
63 TTAAAATACATGAGTTTTAAATAAAACA-AAGGCAATACTCCATATCTAGAAAGTCGAGGTGTC
32815178 GTGTCCTAACGTACTGG
1 GTGTCCTAACGTACTGG
32815195 ATATAACATT
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
125 74 0.61
126 11 0.09
127 29 0.24
128 7 0.06
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (125 bp):
GTGTCCTAACGTACTGGGTTTCGATTTTCCGTTTGATCTAAATAACTAATTATCCTTTTAAATTA
AAATACATGAGTTTTAAATAAAACAAAGGCAATACTCCATATCTAGAAAGTCGAGGTGTC
Found at i:32820034 original size:16 final size:16
Alignment explanation
Indices: 32819986--32820045 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
32819976 AAAGGCAGCC
*
32819986 AAAAAGAAATAAACAAA
1 AAAAACAAA-AAACAAA
* * *
32820003 AAAAA-GAGAAAGAAA
1 AAAAACAAAAAACAAA
32820018 AAAAACAAAAAACAAA
1 AAAAACAAAAAACAAA
*
32820034 AATAACAAAAAA
1 AAAAACAAAAAA
32820046 AAAGATTATG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
15 11 0.31
16 19 0.54
17 5 0.14
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.03
Consensus pattern (16 bp):
AAAAACAAAAAACAAA
Found at i:32821931 original size:26 final size:26
Alignment explanation
Indices: 32821902--32822009 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32821892 TGATACAAAT
*
32821902 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
32821928 TGATAATGGGTTAAGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32821954 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32821980 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32822006 TGAT
1 TGAT
32822010 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32825655 original size:118 final size:118
Alignment explanation
Indices: 32825418--32825649 Score: 304
Period size: 118 Copynumber: 1.9 Consensus size: 118
32825408 TAAATCGAAT
* *
32825418 AAAAAAGAAGCCCAGTACGGTAGGGCACGTTTTTTAAAATGATTAAGTATAGAAAATTGCCCTTA
1 AAAAAAGAAGCCCAATACGGTAGGGCACGTTTTTTAAAACGATTAAGTATAGAAAATTGCCCTTA
* * * * * * *
32825483 TTAAAAACTATTTGGGAATAAAATGTTGAATAAAATACTTAAATCGAATATAA
66 TTAAAAACAAATTGAGAATAAAATGTGGAATAAAAGAATTAAAACGAATATAA
* * *
32825536 AAAAAACGAA-CCCAATACGGTAGGGCACGTTTTTTAAAACGGTTAAGTATAGAAAATTGTCTTT
1 AAAAAA-GAAGCCCAATACGGTAGGGCACGTTTTTTAAAACGATTAAGTATAGAAAATTGCCCTT
* *
32825600 ATGTTAAAAACAAATTGAGAATACATTGTGGAATAAAAGAATTAAAACGA
65 A--TTAAAAACAAATTGAGAATAAAATGTGGAATAAAAGAATTAAAACGA
32825650 TTAAAATTTG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
118 56 0.58
119 3 0.03
120 38 0.39
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (118 bp):
AAAAAAGAAGCCCAATACGGTAGGGCACGTTTTTTAAAACGATTAAGTATAGAAAATTGCCCTTA
TTAAAAACAAATTGAGAATAAAATGTGGAATAAAAGAATTAAAACGAATATAA
Found at i:32825915 original size:22 final size:22
Alignment explanation
Indices: 32825880--32825921 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
32825870 GATAAAAGTG
32825880 AAAATTAAAATAATAACTATACT
1 AAAATTAAAATAATAA-TATACT
*
32825903 AAAA-TAACATAATAATATA
1 AAAATTAAAATAATAATATA
32825922 GTATGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATTAAAATAATAATATACT
Found at i:32826063 original size:21 final size:22
Alignment explanation
Indices: 32826033--32826077 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
32826023 TAATAAAAAT
*
32826033 ATAATGAATAT-ATAATATTAA
1 ATAATGAATATAATAATATGAA
*
32826054 ATAATTAATATAATAATATGAA
1 ATAATGAATATAATAATATGAA
32826076 AT
1 AT
32826078 CAAAACTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
ATAATGAATATAATAATATGAA
Found at i:32826191 original size:13 final size:13
Alignment explanation
Indices: 32826141--32826209 Score: 54
Period size: 13 Copynumber: 5.3 Consensus size: 13
32826131 TAATATGCGT
*
32826141 ATAAAAAGTAAAA
1 ATAAATAGTAAAA
* *
32826154 TTAAATGACTAATAA
1 ATAAAT-AGTAA-AA
*
32826169 A-AAATGGTAAAA
1 ATAAATAGTAAAA
32826181 ATAAATAGTAAAA
1 ATAAATAGTAAAA
32826194 AT-AATAG-AAATA
1 ATAAATAGTAAA-A
32826206 ATAA
1 ATAA
32826210 TAATATAATA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
11 3 0.07
12 11 0.25
13 20 0.45
14 8 0.18
15 2 0.05
ACGTcount: A:0.67, C:0.01, G:0.09, T:0.23
Consensus pattern (13 bp):
ATAAATAGTAAAA
Found at i:32827569 original size:44 final size:45
Alignment explanation
Indices: 32827496--32827686 Score: 120
Period size: 44 Copynumber: 4.3 Consensus size: 45
32827486 CCTAAGCAGT
*
32827496 AATGGAGCAGATTGAAGACAGTAAATCTTATCTC-CATGTAGCGGC
1 AATGGAGCAGATTGAAGACAGTAAATCTTATCTCTC-TGAAGCGGC
* * * * **
32827541 AATGGAGCAGATTTAAGCCA-TCAGTCTTATCTCTCTGAAGTTGC
1 AATGGAGCAGATTGAAGACAGTAAATCTTATCTCTCTGAAGCGGC
* * ** * * * * * *
32827585 AATGGAGCAGACTGAAAATTGCAGACCTTGTCTCTCT-AAGCAGT
1 AATGGAGCAGATTGAAGACAGTAAATCTTATCTCTCTGAAGCGGC
* * * * * * *
32827629 AGTGGAGCAGATCGAAGA-TGACAAATCTTATCTCTATGTAGCGGT
1 AATGGAGCAGATTGAAGACAG-TAAATCTTATCTCTCTGAAGCGGC
32827674 AATGGAGCAGATT
1 AATGGAGCAGATT
32827687 TAAGCCACCA
Statistics
Matches: 108, Mismatches: 34, Indels: 8
0.72 0.23 0.05
Matches are distributed among these distances:
43 2 0.02
44 61 0.56
45 45 0.42
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (45 bp):
AATGGAGCAGATTGAAGACAGTAAATCTTATCTCTCTGAAGCGGC
Found at i:32827771 original size:133 final size:133
Alignment explanation
Indices: 32827467--32827772 Score: 294
Period size: 133 Copynumber: 2.3 Consensus size: 133
32827457 AACACTGATG
* * * * * * * *
32827467 AAATTACAGATCTTATTTCCCTAAGCAGTAATGGAGCAGATTGAAGA-CAGTAAATCTTATCTCC
1 AAATTACAGACCTTATCTCCCTAAGCAGCAGTGAAGCAGATCGAAGATGA-CAAATCTTATCTCC
* * * * * *
32827531 ATGTAGCGGCAATGGAGCAGATTTAAGCCATCAGTCTTATCTCTCTGAAGTTGCAATGGAGCAGA
65 ATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTCCAACGGAACAGA
*
32827596 CTGA
130 CTCA
* * * * * *
32827600 AAATTGCAGACCTTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAATCTTATCTCTA
1 AAATTACAGACCTTATCTCCCTAAGCAGCAGTGAAGCAGATCGAAGATGACAAATCTTATCTCCA
* * * **
32827665 TGTAGCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTCCAGCGGAATAGGT
66 TGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTCCAACGGAACAGAC
32827730 TCA
131 TCA
* * **
32827733 AGA-TACA-AGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGA
1 AAATTACAGA-CCTTATCTCCCT-AAGCAGCAGTGAAGCAGA
32827773 CTAAAAATTA
Statistics
Matches: 139, Mismatches: 31, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
131 1 0.01
132 12 0.09
133 125 0.90
134 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (133 bp):
AAATTACAGACCTTATCTCCCTAAGCAGCAGTGAAGCAGATCGAAGATGACAAATCTTATCTCCA
TGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTGAAGTTCCAACGGAACAGAC
TCA
Found at i:32827800 original size:29 final size:29
Alignment explanation
Indices: 32827758--32827816 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
32827748 CTCCCTGAAG
32827758 TTGCAGTGAAGCAGACTAAAAATTACAGA
1 TTGCAGTGAAGCAGACTAAAAATTACAGA
32827787 TTGCAGTGAAGCAGACTAAAAATTACAGA
1 TTGCAGTGAAGCAGACTAAAAATTACAGA
32827816 T
1 T
32827817 CTTATCTCCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (29 bp):
TTGCAGTGAAGCAGACTAAAAATTACAGA
Found at i:32827930 original size:44 final size:44
Alignment explanation
Indices: 32827882--32827978 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
32827872 GTAGCGGCAA
* * ** * *
32827882 TGGAGCAGATTTAAGCCACCTGCCTTATCTCCCTGAAGTTGCAG
1 TGGAGCAGATTCAAGACACAAGCCTTATCTACCTGAAGTTGCAC
* * *
32827926 TGGAGCAGGTTCAAGATACAAGTCTTATCTACCTGAAGTTGCAC
1 TGGAGCAGATTCAAGACACAAGCCTTATCTACCTGAAGTTGCAC
32827970 TGGAGCAGA
1 TGGAGCAGA
32827979 CTGAAGATAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Consensus pattern (44 bp):
TGGAGCAGATTCAAGACACAAGCCTTATCTACCTGAAGTTGCAC
Found at i:32827944 original size:206 final size:206
Alignment explanation
Indices: 32827581--32827980 Score: 604
Period size: 206 Copynumber: 1.9 Consensus size: 206
32827571 CTCTCTGAAG
* * * * *
32827581 TTGCAATGGAGCAGACTGAAAATTGCAGACCTTGTCTCTCTAAGCAGTAGTGGAGCAGATCGAAG
1 TTGCAATGAAGCAGACTAAAAATTACAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
* * *
32827646 ATGACAAATCTTATCTCTATGTAGCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTG
66 ACGACAAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTG
* * *
32827711 AAGTTCCAGCGGAATAGGTTCAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTA
131 AAGTTCCAGCGGAACAGGTTCAAGATACAAGTCTTATCTACCTGAAGTTGCACTGAAGCAGACTA
32827776 AAAATTACAGA
196 AAAATTACAGA
* *
32827787 TTGCAGTGAAGCAGACTAAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-AAG
1 TTGCAATGAAGCAGACTAAAAATTACAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAA-
* * *
32827851 GACGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCTGCCTTATCTCCCT
65 GACGACAAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCT
* * * *
32827916 GAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTACCTGAAGTTGCACTGGAGCAGACT
130 GAAGTTCCAGCGGAACAGGTTCAAGATACAAGTCTTATCTACCTGAAGTTGCACTGAAGCAGACT
32827981 GAAGATAGCA
Statistics
Matches: 173, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
205 2 0.01
206 171 0.99
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (206 bp):
TTGCAATGAAGCAGACTAAAAATTACAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
ACGACAAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCCTG
AAGTTCCAGCGGAACAGGTTCAAGATACAAGTCTTATCTACCTGAAGTTGCACTGAAGCAGACTA
AAAATTACAGA
Found at i:32827952 original size:88 final size:88
Alignment explanation
Indices: 32827817--32828097 Score: 214
Period size: 88 Copynumber: 3.2 Consensus size: 88
32827807 AATTACAGAT
** * * * *
32827817 CTTATCTCCCT-AAGCAGTAGTGGAGCAGA-TCAAGGACGGCGAATCTTATCTCCATGTAGCGGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTCAA-GATGACGAATCTTATCTCCATGTAGCGGC
*
32827880 AATGGAGCAGATTTAAGCCACCTG
65 AATGGAGCAGATTTAAGCCACCAG
** * **
32827904 CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGAT-AC-AAGTCTTATCTACC-TGAAGTT
1 -CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTCAAGATGACGAA-TCTTATCT-CCATGTAGCG
* * * ** * *
32827966 GCACTGGAGCAGACTGAAGATAGCAAAT
63 GCAATGGAGCAGATTTAAGCCA-C-CAG
* * * * * * *
32827994 CTTATCTCTCT-AAGTAGTAGTGGAGCAAATTGAAGATGGCGAATCTTATCTCTATGTAACGGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTCAAGATGACGAATCTTATCTCCATGTAGCGGCA
32828058 ATGGAGCAGATTTAAGCCACCAG
66 ATGGAGCAGATTTAAGCCACCAG
* *
32828081 ATTATTTCCCTGAAGTT
1 CTTATCTCCCTGAAGTT
32828098 ACAGCGAAAT
Statistics
Matches: 143, Mismatches: 40, Indels: 20
0.70 0.20 0.10
Matches are distributed among these distances:
87 11 0.08
88 68 0.48
89 58 0.41
90 6 0.04
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (88 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAAATTCAAGATGACGAATCTTATCTCCATGTAGCGGCA
ATGGAGCAGATTTAAGCCACCAG
Found at i:32828132 original size:177 final size:177
Alignment explanation
Indices: 32827815--32828142 Score: 421
Period size: 177 Copynumber: 1.9 Consensus size: 177
32827805 AAAATTACAG
* *
32827815 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGGACGGCGAATCTTATCTCCATGTAGCGGC
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAGGACGGCGAATCTTATCTCCATGTAACGGC
* * * * * * *
32827880 AATGGAGCAGATTTAAGCCACCTGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATAC
66 AATGGAGCAGATTTAAGCCACCAGCATTATCTCCCTGAAGTTACAGCGAAACAGGATCAAGATAC
**
32827945 AAGTCTTATCTAC-CTGAAGTTGCACTGGAGCAGACTGAAGATAGCAA
131 AAACCTTATCT-CTCTGAAGTTGCACTGGAGCAGACTGAAGATAGCAA
* * * * *
32827992 ATCTTATCTCTCTAAGTAGTAGTGGAGCAAATTGAA-GATGGCGAATCTTATCTCTATGTAACGG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAAA-TCAAGGACGGCGAATCTTATCTCCATGTAACGG
* * *
32828056 CAATGGAGCAGATTTAAGCCACCAG-ATTATTTCCCTGAAGTTACAGCGAAATA-GATCGAGGAT
65 CAATGGAGCAGATTTAAGCCACCAGCATTATCTCCCTGAAGTTACAGCGAAACAGGATC-AAGAT
32828119 AGCAAACCTTATCTCTCTGAAGTT
129 A-CAAACCTTATCTCTCTGAAGTT
32828143 TTAGAGAGCA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
175 3 0.02
176 27 0.21
177 95 0.74
178 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (177 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAAATCAAGGACGGCGAATCTTATCTCCATGTAACGGC
AATGGAGCAGATTTAAGCCACCAGCATTATCTCCCTGAAGTTACAGCGAAACAGGATCAAGATAC
AAACCTTATCTCTCTGAAGTTGCACTGGAGCAGACTGAAGATAGCAA
Found at i:32828182 original size:43 final size:45
Alignment explanation
Indices: 32828129--32828324 Score: 116
Period size: 45 Copynumber: 4.4 Consensus size: 45
32828119 AGCAAACCTT
* ** * *
32828129 ATCTCTCTGAAGTTTTAG-AGAGCAGGTTGAAGTTA-CATG-TCTC
1 ATCTCCCTGAAGTTCCAGTAGAGCAGATTGAAGATAGCA-GATCTC
* *
32828172 ATCTCCCTGAAGTTCCAGTAGAGTAGATTGAAGATAGCAGATCTT
1 ATCTCCCTGAAGTTCCAGTAGAGCAGATTGAAGATAGCAGATCTC
** ** ** * * * * *
32828217 ATCTCCCTGAAGTTGTAGCGGAGCAGATCAAATATAGTAAACCTT
1 ATCTCCCTGAAGTTCCAGTAGAGCAGATTGAAGATAGCAGATCTC
** * *
32828262 ATCTCTTTGAAGTTGCAGTAGAGCA-ACTTGAAG-TAGCA-AGTCTT
1 ATCTCCCTGAAGTTCCAGTAGAGCAGA-TTGAAGATAGCAGA-TCTC
*
32828306 ATCTCCCTGAAGTTGCAGT
1 ATCTCCCTGAAGTTCCAGT
32828325 GGAACAGGTT
Statistics
Matches: 118, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
43 16 0.14
44 40 0.34
45 62 0.53
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (45 bp):
ATCTCCCTGAAGTTCCAGTAGAGCAGATTGAAGATAGCAGATCTC
Found at i:32828224 original size:45 final size:45
Alignment explanation
Indices: 32827905--32828512 Score: 359
Period size: 44 Copynumber: 13.7 Consensus size: 45
32827895 AGCCACCTGC
* * *
32827905 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATA-CAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* * *
32827949 CTTATCTACCTGAAGTTGCACTGGAGCAGACTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* * * * * *
32827994 CTTATCTCTCT-AAGTAGTAGTGGAGCAAATTGAAGATGGCGAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
** * * ** * *
32828038 CTTATCTCTATGTAACG--GCAATGGAGCAGATTTAAGCCACCAGA-
1 CTTATCTCCCTG-AA-GTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* * * * ** * * *
32828082 -TTATTTCCCTGAAGTTACAGCGAAATAGATCGAGGATAGCAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* ** * * * **
32828126 CTTATCTCTCTGAAGTTTTAG-AGAGCAGGTTGAAGTTA-CATGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* * * * *
32828169 CTCATCTCCCTGAAGTTCCAGTAGAGTAGATTGAAGATAGCAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* * ** * * *
32828214 CTTATCTCCCTGAAGTTGTAGCGGAGCAGATCAAATATAGTAAAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
** * *
32828259 CTTATCTCTTTGAAGTTGCAGTAGAGCA-ACTTGAAG-TAGCAAGT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATAGCAAAT
* * * *
32828303 CTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAA-ATTACCAACT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAGCAAAT
* * * * * *
32828348 CTTACCTCCTTGAAGTT-CTAGCGGAGTAGATCGAAGCTA-CAAAT
1 CTTATCTCCCTGAAGTTGC-AGTGGAGCAGATTGAAGATAGCAAAT
* * * * *
32828392 CTCT-TCTCCTTGAAATTACATTGGAGCAGATT-AA-A-ACCACAAGT
1 CT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-AA-T
* * * *
32828436 CTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGACAGCTAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
* *
32828481 CTTATCTCCTTGAAGTTGCAGTGGAGCGGATT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
32828513 AAGGCGACAA
Statistics
Matches: 415, Mismatches: 124, Indels: 49
0.71 0.21 0.08
Matches are distributed among these distances:
41 2 0.00
42 4 0.01
43 46 0.11
44 180 0.43
45 175 0.42
46 5 0.01
47 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAAT
Found at i:32828351 original size:134 final size:133
Alignment explanation
Indices: 32828117--32828379 Score: 307
Period size: 134 Copynumber: 2.0 Consensus size: 133
32828107 TAGATCGAGG
** ** *
32828117 ATAGCAAACCTTATCTCTCTGAAGTTTTAGAGAGCAGGTTGAAGTTACATGTCTCATCTCCCTGA
1 ATAGCAAACCTTATCTCTCTGAAGTTGCAGAGAGCAACTTGAAGTTACAAGTCTCATCTCCCTGA
** * * *
32828182 AGTTCCAGTAGAGTAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGTAGCGGAGCAGATCA
66 AGTTCCAGTAGAACAGATTGAAGATACCAGATCTTACCTCCCTGAAGTTCTAGCGGAGCAGATCA
32828247 AAT
131 AAT
* * *
32828250 ATAGTAAACCTTATCTCTTTGAAGTTGCAGTAGAGCAACTTGAAG-TAGCAAGTCTTATCTCCCT
1 ATAGCAAACCTTATCTCTCTGAAGTTGCAG-AGAGCAACTTGAAGTTA-CAAGTCTCATCTCCCT
* * * * *
32828314 GAAGTTGCAGTGGAACAGGTTGAA-ATTACCA-ACTCTTACCTCCTTGAAGTTCTAGCGGAGTAG
64 GAAGTTCCAGTAGAACAGATTGAAGA-TACCAGA-TCTTACCTCCCTGAAGTTCTAGCGGAGCAG
32828377 ATC
127 ATC
32828380 GAAGCTACAA
Statistics
Matches: 108, Mismatches: 18, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
133 30 0.28
134 78 0.72
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (133 bp):
ATAGCAAACCTTATCTCTCTGAAGTTGCAGAGAGCAACTTGAAGTTACAAGTCTCATCTCCCTGA
AGTTCCAGTAGAACAGATTGAAGATACCAGATCTTACCTCCCTGAAGTTCTAGCGGAGCAGATCA
AAT
Found at i:32828506 original size:89 final size:87
Alignment explanation
Indices: 32828167--32828514 Score: 249
Period size: 89 Copynumber: 3.9 Consensus size: 87
32828157 GAAGTTACAT
* * * *
32828167 GTCTCATCTCCCTGAAGTTCCAGTAGAGTAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTG
1 GTCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAG-CAGCA-ATCTTATCTCCCTGAAGTTG
* * * **
32828232 TAGCGGAGCAGATCAAATATAGTAA
64 CAGTGGAGCAGATTAAA-ATACCAA
** ** * *
32828257 ACCTTATCTCTTTGAAGTTGCAGTAGAGCA-ACTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTG
1 GTCTTATCTCCCTGAAGTTGCAGTAGAGTAGAC-TGAAGCAGCAA-TCTTATCTCCCTGAAGTTG
* * *
32828321 CAGTGGAACAGGTTGAAATTACCAA
64 CAGTGGAGCAGATT-AAAATACCAA
* * * ** * *
32828346 CTCTTACCTCCTTGAAGTT-CTAGCGGAGTAGA-TCGAAGCTA-CAAATCTCT-TCTCCTTGAAA
1 GTCTTATCTCCCTGAAGTTGC-AGTAGAGTAGACT-GAAGC-AGC-AATCT-TATCTCCCTGAAG
* * *
32828407 TTACATTGGAGCAGATTAAAA-CCACAA
61 TTGCAGTGGAGCAGATTAAAATAC-CAA
* *
32828434 GTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGACAGCTAATCTTATCTCCTTGAAGTTG
1 GTCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAG-CAGC-AATCTTATCTCCCTGAAGTTG
*
32828499 CAGTGGAGCGGATTAA
64 CAGTGGAGCAGATTAA
32828515 GGCGACAACA
Statistics
Matches: 202, Mismatches: 41, Indels: 31
0.74 0.15 0.11
Matches are distributed among these distances:
87 1 0.00
88 41 0.20
89 124 0.61
90 36 0.18
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (87 bp):
GTCTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGCAGCAATCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAATACCAA
Found at i:32828556 original size:20 final size:20
Alignment explanation
Indices: 32828531--32828570 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32828521 AACAAAGTAG
32828531 ATCAAAACTACAAGTTTTAT
1 ATCAAAACTACAAGTTTTAT
32828551 ATCAAAACTACAAGTTTTAT
1 ATCAAAACTACAAGTTTTAT
32828571 CTTTCTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (20 bp):
ATCAAAACTACAAGTTTTAT
Found at i:32829124 original size:3 final size:3
Alignment explanation
Indices: 32829110--32829463 Score: 79
Period size: 3 Copynumber: 115.3 Consensus size: 3
32829100 AATAGTGTTT
* * *
32829110 TTA TTA TT- TTA TTA TTA TTT TTA CCTTT TTA TTA CTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TT-A
* * * * * **
32829157 CCTA CTA TTA TTA TTT TTA TTA ATA -TA ATA TTA TT- TCC TT- TT-
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** *
32829199 TTA -TA TTG TTA TTA TTA TTA GCA CGTA -TA TTA TTA TTA TTAA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A T-TA
* * * * *
32829245 TCA TTG TTA TTT TCTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT-
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * *
32829289 TCTA TTA TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCA TCA TTT
1 T-TA TTA TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA
* * * **
32829335 TCTA TTA TGA TTA ATA TGTCA TTTG TTCA TTA TTA TTA TTA TTA ACA
1 T-TA TTA TTA TTA TTA T-T-A -TTA TT-A TTA TTA TTA TTA TTA TTA
* * * * * * **
32829382 CTA TTA TCA TCA TTA TATA TTTA CTT- TTT TTA ATA TCA TTA CCA TTA
1 TTA TTA TTA TTA TTA T-TA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* *
32829429 -TA TT- TTA TTA TTA TTA TTA CTA TTA TTT TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
32829464 CCGTCCTATT
Statistics
Matches: 258, Mismatches: 59, Indels: 68
0.67 0.15 0.18
Matches are distributed among these distances:
2 26 0.10
3 193 0.75
4 28 0.11
5 9 0.03
6 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:32829132 original size:20 final size:20
Alignment explanation
Indices: 32829107--32829192 Score: 57
Period size: 20 Copynumber: 4.2 Consensus size: 20
32829097 CGTAATAGTG
32829107 TTTTTATTATTTTATTATTA
1 TTTTTATTATTTTATTATTA
* *
32829127 TTTTTACCT-TTTTATTACTA
1 TTTTTA-TTATTTTATTATTA
* **
32829147 TTATTATTAACCTACTATTATTA
1 TTTTTATT-A--TTTTATTATTA
* * *
32829170 TTTTTATTAATATAATATTA
1 TTTTTATTATTTTATTATTA
32829190 TTT
1 TTT
32829193 CCTTTTTTAT
Statistics
Matches: 49, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
19 1 0.02
20 31 0.63
21 1 0.02
22 1 0.02
23 15 0.31
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTTATTATTTTATTATTA
Found at i:32829188 original size:23 final size:23
Alignment explanation
Indices: 32829139--32829191 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
32829129 TTTACCTTTT
* * *
32829139 TATTACTATTATTATTAACCTAC
1 TATTATTATTATTATTAACATAA
* *
32829162 TATTATTATTTTTATTAATATAA
1 TATTATTATTATTATTAACATAA
32829185 TATTATT
1 TATTATT
32829192 TCCTTTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTATTATTATTATTAACATAA
Found at i:32832563 original size:13 final size:14
Alignment explanation
Indices: 32832540--32832568 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32832530 GATATGAGGG
32832540 TTATCTTTTATTTT
1 TTATCTTTTATTTT
32832554 TTAT-TTTTATTTT
1 TTATCTTTTATTTT
32832567 TT
1 TT
32832569 GTTAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTATCTTTTATTTT
Found at i:32836252 original size:13 final size:13
Alignment explanation
Indices: 32836224--32836262 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
32836214 AATCTATTTA
32836224 TTTAGTGTTTAAGG
1 TTTAG-GTTTAAGG
*
32836238 TTTAGGTTTAGGG
1 TTTAGGTTTAAGG
*
32836251 TTTAGGGTTAAG
1 TTTAGGTTTAAG
32836263 AACATGAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (13 bp):
TTTAGGTTTAAGG
Found at i:32837218 original size:19 final size:19
Alignment explanation
Indices: 32837194--32837235 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
32837184 TTGCTCATTC
32837194 ATCTAGCCTATAAGAATCA
1 ATCTAGCCTATAAGAATCA
*
32837213 ATCTAGCCTATAAGAATTA
1 ATCTAGCCTATAAGAATCA
32837232 ATCT
1 ATCT
32837236 GTTTATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (19 bp):
ATCTAGCCTATAAGAATCA
Found at i:32853801 original size:13 final size:13
Alignment explanation
Indices: 32853775--32853817 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 13
32853765 GTATTTAAGT
32853775 ATATAATATAATA
1 ATATAATATAATA
32853788 ATATTTTAATATAATA
1 ATA---TAATATAATA
32853804 ATATAATATAATA
1 ATATAATATAATA
32853817 A
1 A
32853818 AACATAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 14 0.52
16 13 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:32853817 original size:8 final size:8
Alignment explanation
Indices: 32853777--32853811 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
32853767 ATTTAAGTAT
32853777 ATAATATA
1 ATAATATA
*
32853785 ATAATATT
1 ATAATATA
*
32853793 TTAATATA
1 ATAATATA
32853801 ATAATATA
1 ATAATATA
32853809 ATA
1 ATA
32853812 TAATAAAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATAATATA
Found at i:32854605 original size:24 final size:24
Alignment explanation
Indices: 32854559--32854605 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
32854549 GTTAATTTTG
**
32854559 TATTGAATTGAAATAAGTTTTGAA
1 TATTGAATTGAAATAAGAATTGAA
* *
32854583 TATTGAATTGAAGTATGAATTGA
1 TATTGAATTGAAATAAGAATTGA
32854606 CTGTGATTTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (24 bp):
TATTGAATTGAAATAAGAATTGAA
Found at i:32867396 original size:3 final size:3
Alignment explanation
Indices: 32867390--32867675 Score: 201
Period size: 3 Copynumber: 95.3 Consensus size: 3
32867380 ATAAACAAGA
* * * * *
32867390 AAT AAT AAT AGT AA- AAA AAT AAC AAT AGT AAT AAT GAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
32867437 AAT AAT AAT AAT AAT AAT AGT AA- AGAC AAC AAC AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* *
32867482 AAT AAT -AG AAT -AT AAT AAT AA- AAT AAGG AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
* * * *
32867525 AAC AAC AAT AAT -AT AAAT AAT AAT AAT AAAC AAT AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT
* * * *
32867571 AAT AAT AAT AAT GAT AGT AAT AAT AAT AGT AAT AAT AGAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
* ** * * **
32867617 AGT -AT CGT AAA AAT AAT AAT AAT AGT AAT AATT AATT AATT AAT TTT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AA-T AA-T AAT AAT
32867664 AAT AAT AA- AAT A
1 AAT AAT AAT AAT A
32867676 GCAAAATAAC
Statistics
Matches: 224, Mismatches: 45, Indels: 28
0.75 0.15 0.09
Matches are distributed among these distances:
2 13 0.06
3 191 0.85
4 20 0.09
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Done.