Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 127 of 328
Found at i:36527437 original size:40 final size:40
Alignment explanation
Indices: 36527345--36527525 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
36527335 AAATTGAATG
* * * *
36527345 ATATCCGGGCTAAG-CCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36527383 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36527423 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
36527463 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
36527503 ATATCCGGG-TAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
36527526 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 13 0.11
39 31 0.26
40 75 0.62
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:36535596 original size:40 final size:39
Alignment explanation
Indices: 36535428--36535598 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
36535418 AGAAATTGAA
* *
36535428 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
36535468 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
36535508 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
36535548 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
36535588 TGATATCCGGG
1 TGATATCCGGG
36535599 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:36537161 original size:18 final size:18
Alignment explanation
Indices: 36537138--36537174 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
36537128 GTTAGGGGTG
36537138 TTACACCTCCTCAAAAGT
1 TTACACCTCCTCAAAAGT
36537156 TTACACCTCCTCAAAAGT
1 TTACACCTCCTCAAAAGT
36537174 T
1 T
36537175 AAGTCTGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.30
Consensus pattern (18 bp):
TTACACCTCCTCAAAAGT
Found at i:36542133 original size:98 final size:97
Alignment explanation
Indices: 36541959--36542134 Score: 228
Period size: 98 Copynumber: 1.8 Consensus size: 97
36541949 GATAAAATGT
*
36541959 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACACATCAAAGTCGATGCCATGTCCCAGA
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACACATCAAAGTCGATACCATGTCCCAGA
36542024 CAGGTCCTACACTAACCTTCATATATCAAGGC
66 CAGGTCCTACACTAACCTTCATATATCAAGGC
* * ** * * * * *
36542056 CGATGCTATGTCCCAGACA-GGTCTTACACTGGCTGTCATCTATCGATGTTGATACTATGTCTCA
1 CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACA-C-ATCAAAGTCGATACCATGTCCCA
*
36542120 GACAGGTCTTACACT
64 GACAGGTCCTACACT
36542135 GACACACAAC
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
96 17 0.26
97 18 0.27
98 31 0.47
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.27
Consensus pattern (97 bp):
CGATGCCATGTCCAAGACATGGTCTTACACTGGCTAACACATCAAAGTCGATACCATGTCCCAGA
CAGGTCCTACACTAACCTTCATATATCAAGGC
Found at i:36542266 original size:46 final size:45
Alignment explanation
Indices: 36542155--36542321 Score: 176
Period size: 46 Copynumber: 3.6 Consensus size: 45
36542145 AAGCTAACGC
* * *
36542155 CATGTCCCAGACATGTCTTACACTATCTTGTATATCTCGAA-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC---TCTCTCTC-AATGCCGATG
* * *
36542203 CATGTCCCAAACCTGTCTTACACTAGCTCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC-TCTCAATGCCGATG
* * *
36542249 CATGTCCCAGACATGTCTTACACTGGCTCTC-ATAATATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCA-AT-GCCGATG
36542295 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
36542322 ACACATATCA
Statistics
Matches: 102, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
44 2 0.02
45 6 0.06
46 70 0.69
48 24 0.24
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTCTCAATGCCGATG
Found at i:36548793 original size:49 final size:49
Alignment explanation
Indices: 36548733--36548998 Score: 184
Period size: 49 Copynumber: 5.6 Consensus size: 49
36548723 ACATCAAAGT
* *
36548733 CGATGCCATGTCCCAGACAGGTCCTACACTGACTTTCATATATCAAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGC
* * * * *
36548782 CGATGCTATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
* * * *
36548831 CGATGCCATGTCCTAGACAGGTCTTACACTGA--CACACA-A-CA-AGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
** * * * * *
36548875 TAACGCCATGTCCCAGACAGGTCTTACTCT-AGCT-TGTATATCTCGAG-GT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCT-CATATATC-AGTGC
*
36548924 CGATG-CATGTCCCAGACATGTCTTACACT-AGCTCTCATA-AT--GTGGC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCAGT-GC
* *
36548970 CGATG-AATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCCAGACAGGTCTTACACT
36548999 AGCACACATA
Statistics
Matches: 170, Mismatches: 35, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
43 1 0.01
44 27 0.16
45 1 0.01
46 32 0.19
47 4 0.02
48 31 0.18
49 74 0.44
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
Found at i:36559475 original size:27 final size:27
Alignment explanation
Indices: 36559445--36559585 Score: 119
Period size: 27 Copynumber: 5.2 Consensus size: 27
36559435 GTGACGAAGT
36559445 CACCAGATACAGTTATTGTGGCAGAGC
1 CACCAGATACAGTTATTGTGGCAGAGC
*
36559472 CACCAGA-ACAGATATATGTGGCAGAGC
1 CACCAGATACAGTTAT-TGTGGCAGAGC
* * *
36559499 CACCAGAT-CAGATAATTGTGGCATATC
1 CACCAGATACAG-TTATTGTGGCAGAGC
* * *
36559526 TACCAG-GACAGATATATGTGGCAGAGC
1 CACCAGATACAGTTAT-TGTGGCAGAGC
* * * *
36559553 TACCAGAT-CAGATAATTATGGCATAGC
1 CACCAGATACAG-TTATTGTGGCAGAGC
36559580 CACCAG
1 CACCAG
36559586 GACGCTTCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
26 9 0.10
27 77 0.86
28 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
CACCAGATACAGTTATTGTGGCAGAGC
Found at i:36559586 original size:54 final size:54
Alignment explanation
Indices: 36559445--36559588 Score: 209
Period size: 54 Copynumber: 2.7 Consensus size: 54
36559435 GTGACGAAGT
* * *
36559445 CACCAGATACAG-TTATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
36559499 CACCAGATCAGATAATTGTGGCATATCTACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
36559553 TACCAGATCAGATAATTATGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
36559589 GCTTCCTACA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 3 0.04
54 77 0.96
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:36561230 original size:26 final size:26
Alignment explanation
Indices: 36561199--36561306 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
36561189 TGAAATGCCC
*
36561199 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
36561225 ATCATGGAACCTTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
36561251 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
36561277 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
36561303 ATCA
1 ATCA
36561307 ATTTGTACCC
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:36563929 original size:19 final size:20
Alignment explanation
Indices: 36563892--36563931 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36563882 TCTTAAAGTA
36563892 AAAATGAATGTCAAATTTTG
1 AAAATGAATGTCAAATTTTG
* *
36563912 AAAATGTATGTCAATTTTTG
1 AAAATGAATGTCAAATTTTG
36563932 TTTTGGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (20 bp):
AAAATGAATGTCAAATTTTG
Found at i:36566414 original size:95 final size:94
Alignment explanation
Indices: 36566151--36566429 Score: 353
Period size: 95 Copynumber: 2.9 Consensus size: 94
36566141 ACTAGTGGTG
* * ** * *
36566151 GATACCTTACCGATGGCTAAGATCCTGCAAATATTGTAAATTCCTCATAGCTCGTGTGAGCAGCA
1 GATACCTTA-CGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCGTGTGAGCAGCA
* * * * *
36566216 TCTTGTAACAATTAATGTCCCGATTTATTG
65 TCATGTAATAGTTAATGTCCCGATTTACTA
* * *
36566246 GATACCTTACTAATGGCTAAGATCCTACATATATTGCGGATTCTTCACAGCTCTTGTGAGCAGCA
1 GATACCTTAC-GATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCGTGTGAGCAGCA
* **
36566311 TCGTGTAATAGTTAATGTCTTGATTTACTA
65 TCATGTAATAGTTAATGTCCCGATTTACTA
*
36566341 GATACCTTATCGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCGTGTGAGAAGCA
1 GATACCTTA-CGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCGTGTGAGCAGCA
*
36566406 TCATGTAATGGTTAATGT-CCGATT
65 TCATGTAATAGTTAATGTCCCGATT
36566430 CACAGCTCAT
Statistics
Matches: 158, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
94 5 0.03
95 152 0.96
96 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (94 bp):
GATACCTTACGATGGCTAAGATCCTACATATATTGTGGATTCTTCACAGCTCGTGTGAGCAGCAT
CATGTAATAGTTAATGTCCCGATTTACTA
Found at i:36569913 original size:19 final size:17
Alignment explanation
Indices: 36569858--36569907 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 17
36569848 TTATACTATA
36569858 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
*
36569875 --ATATTTATAATTGTAAT
1 AAATATTTATTA-T-TAAT
36569892 AAATATTTATTATTAA
1 AAATATTTATTATTAA
36569908 AATAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 9 0.33
16 1 0.04
17 7 0.26
18 1 0.04
19 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:36575840 original size:48 final size:48
Alignment explanation
Indices: 36575769--36575994 Score: 254
Period size: 48 Copynumber: 4.7 Consensus size: 48
36575759 TGTGAGCCGA
* * * ** *
36575769 TGTAAGACCATGTTTGGAACATGGCATTGACATTTATATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGACATGAGAGCTAG
* * * ** *
36575817 TGTAAGACCATGTCTGGGACATGGCATTGGCCTCGGTATGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGACATGAGAGCTAG
* * * ** *
36575865 TGTAAGACCATATTTGGAACATGGCATCGACATTTACATAAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGACATGAGAGCTAG
* * *
36575913 TGTAAGACCATGTCTAGGACATGGCATCGACCTCGACATGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGACATGAGAGCTAG
*
36575961 TGTAAAACCATGTCTGGGACATGGCATCGACATC
1 TGTAAGACCATGTCTGGGACATGGCATCGACATC
36575995 TTACCCTTTT
Statistics
Matches: 146, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 146 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATCGACATGAGAGCTAG
Found at i:36575921 original size:96 final size:96
Alignment explanation
Indices: 36575769--36575998 Score: 343
Period size: 96 Copynumber: 2.4 Consensus size: 96
36575759 TGTGAGCCGA
* * * *
36575769 TGTAAGACCATGTTTGGAACATGGCATTGACATTTATATGAGAGCTAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTTTGGAACATGGCATCGACATTTACATAAGAGCTAGTGTAAGACCATGTCTAG
* * **
36575834 GACATGGCATTGGCCTCGGTATGTGAGCTAG
66 GACATGGCATCGACCTCGACATGTGAGCTAG
*
36575865 TGTAAGACCATATTTGGAACATGGCATCGACATTTACATAAGAGCTAGTGTAAGACCATGTCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGACATTTACATAAGAGCTAGTGTAAGACCATGTCTAG
36575930 GACATGGCATCGACCTCGACATGTGAGCTAG
66 GACATGGCATCGACCTCGACATGTGAGCTAG
* * *
36575961 TGTAAAACCATGTCTGGGACATGGCATCGACATCTTAC
1 TGTAAGACCATGTTTGGAACATGGCATCGACAT-TTAC
36575999 CCTTTTGTAT
Statistics
Matches: 120, Mismatches: 13, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
96 116 0.97
97 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (96 bp):
TGTAAGACCATGTTTGGAACATGGCATCGACATTTACATAAGAGCTAGTGTAAGACCATGTCTAG
GACATGGCATCGACCTCGACATGTGAGCTAG
Found at i:36582957 original size:40 final size:40
Alignment explanation
Indices: 36582872--36583059 Score: 261
Period size: 40 Copynumber: 4.7 Consensus size: 40
36582862 TCCAAACACA
** *
36582872 AATGCCTTCGGGACTTAGTCCGGATATAAC-ACCAGTACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
* * * ** * *
36582911 AGTGCCTTTGGAACTTGGCCCAGATATAACAACCAGCATG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
36582951 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
36582991 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
* *
36583031 AATTCCTTTGGGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
36583060 TCCTCAATTA
Statistics
Matches: 131, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 24 0.18
40 107 0.82
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
Found at i:36591272 original size:40 final size:39
Alignment explanation
Indices: 36591227--36591433 Score: 227
Period size: 40 Copynumber: 5.2 Consensus size: 39
36591217 CGGAATACAA
*
36591227 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *
36591267 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36591307 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
36591347 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
36591386 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
36591426 CCGGATAT
1 CCGGATAT
36591434 CATTCAATTG
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 35 0.24
40 110 0.76
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36591333 original size:80 final size:79
Alignment explanation
Indices: 36591227--36591433 Score: 254
Period size: 79 Copynumber: 2.6 Consensus size: 79
36591217 CGGAATACAA
* * *
36591227 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATATA-ACGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGAC-ACTAGCAC-AAT
*
36591291 GCCTTCGGGTATTAGC
64 GCCTTCGGGTATTAAC
* * *
36591307 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTCACTAGCACAATGC
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGACACTAGCACAATGC
*
36591372 CTTCGGGTCTTAAC
66 CTTCGGGTATTAAC
** * ** * *
36591386 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
36591434 CATTCAATTG
Statistics
Matches: 109, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
79 56 0.51
80 52 0.48
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGACACTAGCACAATGC
CTTCGGGTATTAAC
Found at i:36599296 original size:40 final size:39
Alignment explanation
Indices: 36599251--36599457 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 39
36599241 CGGAATACAA
*
36599251 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36599291 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
36599331 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* ** *
36599371 CCGGATGTAGTCACTAGCAC-AATGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
** * * *
36599410 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
36599450 CCGGATAT
1 CCGGATAT
36599458 CATTCAATTG
Statistics
Matches: 143, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
39 35 0.24
40 108 0.76
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:36599357 original size:80 final size:79
Alignment explanation
Indices: 36599251--36599456 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
36599241 CGGAATACAA
* * *
36599251 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAA-CGACTTGCACAAAT
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGC-ACTAGCAC-AAT
*
36599315 GCCTTCGGGTATTAGC
64 GCCTTCGGGTATTAAC
* *
36599331 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTAGTCACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAG-CACTAGCACAATG
*
36599395 CCTTCGGGTCTTAAC
65 CCTTCGGGTATTAAC
** * ** * *
36599410 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
36599457 TCATTCAATT
Statistics
Matches: 108, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
79 57 0.53
80 50 0.46
81 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAAGCACTAGCACAATGC
CTTCGGGTATTAAC
Found at i:36602383 original size:46 final size:46
Alignment explanation
Indices: 36602333--36602447 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 46
36602323 CGTAACTGAC
* * *
36602333 GCATGTCCTAGGCATGTCTTACACTGGCT-TACATCACAAGGTCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCTCT-CATCACAAGGCCGAT
* * * *
36602379 GCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCTCTCATCACAAGGCCGAT
36602425 GCCATGTCCTAGACATGGTCTTA
1 G-CATGTCCTAGACAT-GTCTTA
36602448 TTCTGGCTCT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
46 38 0.67
47 13 0.23
48 6 0.11
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
GCATGTCCTAGACATGTCTTACACTAGCTCTCATCACAAGGCCGAT
Found at i:36602773 original size:177 final size:177
Alignment explanation
Indices: 36602477--36602826 Score: 700
Period size: 177 Copynumber: 2.0 Consensus size: 177
36602467 TGTGACACCT
36602477 CGAATGTGACCCTAGTCGGAGAGTGGTTTCGGGACCACGAAACCGAGTCACAAGAATAATTAAGT
1 CGAATGTGACCCTAGTCGGAGAGTGGTTTCGGGACCACGAAACCGAGTCACAAGAATAATTAAGT
36602542 GTTATATTCCGTACTTATTGTATGTGGAATTGGTATGCGTAAATATTTCGTGTCTCGATTTTTAT
66 GTTATATTCCGTACTTATTGTATGTGGAATTGGTATGCGTAAATATTTCGTGTCTCGATTTTTAT
36602607 TAATTAGGTGCTAATTTATAAGAAAGGACTTAGTAGTGAACTTACCC
131 TAATTAGGTGCTAATTTATAAGAAAGGACTTAGTAGTGAACTTACCC
36602654 CGAATGTGACCCTAGTCGGAGAGTGGTTTCGGGACCACGAAACCGAGTCACAAGAATAATTAAGT
1 CGAATGTGACCCTAGTCGGAGAGTGGTTTCGGGACCACGAAACCGAGTCACAAGAATAATTAAGT
36602719 GTTATATTCCGTACTTATTGTATGTGGAATTGGTATGCGTAAATATTTCGTGTCTCGATTTTTAT
66 GTTATATTCCGTACTTATTGTATGTGGAATTGGTATGCGTAAATATTTCGTGTCTCGATTTTTAT
36602784 TAATTAGGTGCTAATTTATAAGAAAGGACTTAGTAGTGAACTT
131 TAATTAGGTGCTAATTTATAAGAAAGGACTTAGTAGTGAACTT
36602827 TGAAAGTACG
Statistics
Matches: 173, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
177 173 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (177 bp):
CGAATGTGACCCTAGTCGGAGAGTGGTTTCGGGACCACGAAACCGAGTCACAAGAATAATTAAGT
GTTATATTCCGTACTTATTGTATGTGGAATTGGTATGCGTAAATATTTCGTGTCTCGATTTTTAT
TAATTAGGTGCTAATTTATAAGAAAGGACTTAGTAGTGAACTTACCC
Found at i:36603504 original size:17 final size:18
Alignment explanation
Indices: 36603462--36603510 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
36603452 AGTTGAAAAG
36603462 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
36603481 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
36603498 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
36603511 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:36604398 original size:40 final size:40
Alignment explanation
Indices: 36604332--36604498 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
36604322 AAATTGAATG
* * *
36604332 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
36604371 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
36604411 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
36604451 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
36604491 ATATCCGG
1 ATATCCGG
36604499 TTATATTCCG
Statistics
Matches: 103, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
39 16 0.16
40 85 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:36613440 original size:48 final size:50
Alignment explanation
Indices: 36613321--36613449 Score: 154
Period size: 48 Copynumber: 2.6 Consensus size: 50
36613311 AAGGCCGACA
* * * * * *
36613321 CCATGTCCCAGACATGGTCTTACACTGGCTCTCGCATCTCCGTGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACACTCGCATATACATGCCGATG
* *
36613371 CCATGTCCCAGACATGATCTTACACTGACAC-CTC-TATACATGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACACTCGCATATACATGCCGATG
* *
36613419 CCATGTCCTAGACATGGTCTTACATTGACAC
1 CCATGTCCCAGACATGGTCTTACACTGACAC
36613450 ATCTCGTAGT
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
48 38 0.56
49 2 0.03
50 28 0.41
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACACTGACACTCGCATATACATGCCGATG
Found at i:36615473 original size:23 final size:24
Alignment explanation
Indices: 36615446--36615506 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 24
36615436 ACTTGAAATG
36615446 TATATTTGAAATGTTTTATAATATATA
1 TATATTTGAAA--TTTTA-AATATATA
36615473 T-T-TTT-AAATTTTAAATATATA
1 TATATTTGAAATTTTAAATATATA
36615494 TATATTTGAAATT
1 TATATTTGAAATT
36615507 ATTTTTCTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
21 9 0.29
22 6 0.19
23 3 0.10
24 8 0.26
25 3 0.10
26 1 0.03
27 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (24 bp):
TATATTTGAAATTTTAAATATATA
Found at i:36615525 original size:20 final size:19
Alignment explanation
Indices: 36615459--36615557 Score: 67
Period size: 20 Copynumber: 4.9 Consensus size: 19
36615449 ATTTGAAATG
36615459 TTTTATAATATATATTTTTAAA
1 TTTTA-AAT-TAT-TTTTTAAA
* * *
36615481 TTTTAAA-TA-TATATATA
1 TTTTAAATTATTTTTTAAA
*
36615498 TTTGAAATTATTTTTCTAAA
1 TTTTAAATTATTTTT-TAAA
36615518 TTTTAAATATTATTTTTTAAA
1 TTTT-AA-ATTATTTTTTAAA
* *
36615539 TATTACATATATTTTTTAA
1 TTTTAAAT-TATTTTTTAA
36615558 TAATATAAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
17 11 0.18
18 2 0.03
19 6 0.10
20 17 0.28
21 11 0.18
22 14 0.23
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (19 bp):
TTTTAAATTATTTTTTAAA
Found at i:36615538 original size:21 final size:21
Alignment explanation
Indices: 36615504--36615557 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
36615494 TATATTTGAA
*
36615504 ATTATTTTTCTAAATTTTAAAT
1 ATTATTTTT-TAAATATTAAAT
*
36615526 ATTATTTTTTAAATATTACAT
1 ATTATTTTTTAAATATTAAAT
36615547 A-TATTTTTTAA
1 ATTATTTTTTAA
36615558 TAATATAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 10 0.33
21 11 0.37
22 9 0.30
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (21 bp):
ATTATTTTTTAAATATTAAAT
Found at i:36615595 original size:22 final size:22
Alignment explanation
Indices: 36615570--36615641 Score: 94
Period size: 23 Copynumber: 3.3 Consensus size: 22
36615560 ATATAAAAGA
* *
36615570 TTTAAATATTTTTAATGT-ATAT
1 TTTAAA-ATTTTAAATATAATAT
36615592 TTT-AAATTTTAAATATAATAT
1 TTTAAAATTTTAAATATAATAT
36615613 ATTTAAAATTTTAAATATAATAT
1 -TTTAAAATTTTAAATATAATAT
36615636 TTTAAA
1 TTTAAA
36615642 TTATGATTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.20
21 6 0.13
22 12 0.27
23 18 0.40
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (22 bp):
TTTAAAATTTTAAATATAATAT
Found at i:36615617 original size:44 final size:44
Alignment explanation
Indices: 36615559--36615643 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
36615549 ATTTTTTAAT
* *
36615559 AATATAAAAGATTTAAATATTTTTAATGT-ATATTTTAAATTTTA
1 AATATAAAAGATTTAAA-ATTTTAAATATAATATTTTAAATTTTA
* *
36615603 AATATAATATATTTAAAATTTTAAATATAATATTTTAAATT
1 AATATAAAAGATTTAAAATTTTAAATATAATATTTTAAATT
36615644 ATGATTTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
43 9 0.25
44 27 0.75
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (44 bp):
AATATAAAAGATTTAAAATTTTAAATATAATATTTTAAATTTTA
Found at i:36615657 original size:14 final size:15
Alignment explanation
Indices: 36615588--36615659 Score: 60
Period size: 14 Copynumber: 4.9 Consensus size: 15
36615578 TTTTTAATGT
*
36615588 ATATTTTAAATTTTAA
1 ATATTTTAAATTAT-A
** *
36615604 ATATAATATATT-TA
1 ATATTTTAAATTATA
*
36615618 AAATTTTAAA-TATA
1 ATATTTTAAATTATA
*
36615632 ATATTTTAAATTATG
1 ATATTTTAAATTATA
36615647 AT-TTTTAAATTAT
1 ATATTTTAAATTAT
36615660 TTTTAAAGAT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
13 1 0.02
14 29 0.64
15 6 0.13
16 9 0.20
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (15 bp):
ATATTTTAAATTATA
Found at i:36615961 original size:20 final size:19
Alignment explanation
Indices: 36615914--36615964 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
36615904 TAAAATCTTT
*
36615914 AAATAT-TTTATATTTTTAA
1 AAATATATTTA-ATATTTAA
*
36615933 AAATTTATTTAATATTTAA
1 AAATATATTTAATATTTAA
36615952 AAATAATATTTAA
1 AAAT-ATATTTAA
36615965 ATATATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATATTTAATATTTAA
Found at i:36615976 original size:14 final size:13
Alignment explanation
Indices: 36615942--36615980 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
36615932 AAAATTTATT
36615942 TAATATTTAAAAA
1 TAATATTTAAAAA
*
36615955 TAATATTTAAATA
1 TAATATTTAAAAA
36615968 TATATATTTAAAA
1 TA-ATATTTAAAA
36615981 TTTAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:36617411 original size:14 final size:15
Alignment explanation
Indices: 36617392--36617424 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
36617382 TATTATTTAA
36617392 TTAAAA-TATATTTT
1 TTAAAAGTATATTTT
36617406 TTAAAAGTTATATTTT
1 TTAAAAG-TATATTTT
36617422 TTA
1 TTA
36617425 GCGGCGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
16 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAAAAGTATATTTT
Found at i:36617528 original size:43 final size:43
Alignment explanation
Indices: 36617421--36617640 Score: 131
Period size: 43 Copynumber: 5.3 Consensus size: 43
36617411 AGTTATATTT
* * * * *
36617421 TTTAGCGGCGTTTATGTGATAAGCGTCGCTAAAGGTCTAT--T-
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTC-ATGGTC
* * ** * *
36617462 TTATAGCGTCGTTTGTGCAAAAAGTGCCTCTAAAAGTCATGGTC
1 TT-TAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGGTC
** * *
36617506 TTTAGCGGCGTTTTTGGGAAAAGCGTTGCTAAAGGTTATGGTC
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGGTC
* * *
36617549 TTT---TGC------GGGAAAAGCGCCGCTAAAGGCCATGGTC
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGGTC
* * **
36617583 TTTAGCAGCGTTTTCGAAAAAAGCGCCGCTAAAAGTCATGGTC
1 TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGGTC
*
36617626 TTTAGCGGCTTTTTT
1 TTTAGCGGCGTTTTT
36617641 TAAAATAATC
Statistics
Matches: 134, Mismatches: 32, Indels: 24
0.71 0.17 0.13
Matches are distributed among these distances:
34 27 0.20
37 2 0.01
40 2 0.01
41 4 0.03
42 26 0.19
43 71 0.53
44 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAAGTCATGGTC
Found at i:36617559 original size:34 final size:34
Alignment explanation
Indices: 36617521--36617585 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
36617511 CGGCGTTTTT
** **
36617521 GGGAAAAGCGTTGCTAAAGGTTATGGTCTTTTGC
1 GGGAAAAGCGCCGCTAAAGGCCATGGTCTTTTGC
36617555 GGGAAAAGCGCCGCTAAAGGCCATGGTCTTT
1 GGGAAAAGCGCCGCTAAAGGCCATGGTCTTT
36617586 AGCAGCGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (34 bp):
GGGAAAAGCGCCGCTAAAGGCCATGGTCTTTTGC
Found at i:36617614 original size:77 final size:77
Alignment explanation
Indices: 36617481--36617633 Score: 189
Period size: 77 Copynumber: 2.0 Consensus size: 77
36617471 CGTTTGTGCA
* * * * * ** ** * *
36617481 AAAAGTGCCTCTAAAAGTCATGGTCTTTAGCGGCGTTTTTGGGAAAAGCGTTGCTAAAGGTTATG
1 AAAAGCGCCGCTAAAAGCCATGGTCTTTAGCAGCGTTTTCGAAAAAAGCGCCGCTAAAAGTCATG
*
36617546 GTCTTTTGCGGG
66 GTCTTTAGCGGG
*
36617558 AAAAGCGCCGCTAAAGGCCATGGTCTTTAGCAGCGTTTTCGAAAAAAGCGCCGCTAAAAGTCATG
1 AAAAGCGCCGCTAAAAGCCATGGTCTTTAGCAGCGTTTTCGAAAAAAGCGCCGCTAAAAGTCATG
36617623 GTCTTTAGCGG
66 GTCTTTAGCGG
36617634 CTTTTTTTAA
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
77 63 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.27
Consensus pattern (77 bp):
AAAAGCGCCGCTAAAAGCCATGGTCTTTAGCAGCGTTTTCGAAAAAAGCGCCGCTAAAAGTCATG
GTCTTTAGCGGG
Found at i:36621548 original size:22 final size:22
Alignment explanation
Indices: 36621523--36621565 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36621513 AACTTAATTC
*
36621523 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
36621545 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
36621566 ATGAGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:36630853 original size:3 final size:3
Alignment explanation
Indices: 36630845--36630889 Score: 63
Period size: 3 Copynumber: 14.7 Consensus size: 3
36630835 AGGGTTTTAT
* *
36630845 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTC GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT
36630890 CTTTATATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:36632382 original size:21 final size:21
Alignment explanation
Indices: 36632343--36632382 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36632333 TCTTTTATGT
*
36632343 TTATGTTTATTATTTTTTTAA
1 TTATGTTTATTATTATTTTAA
* *
36632364 TTATTTTTATTCTTATTTT
1 TTATGTTTATTATTATTTT
36632383 CTTCAACTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (21 bp):
TTATGTTTATTATTATTTTAA
Found at i:36632402 original size:26 final size:24
Alignment explanation
Indices: 36632352--36632427 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 24
36632342 TTTATGTTTA
*
36632352 TTATTTTTTTAA-TTATTTTTATTC
1 TTATTTTTTCAACTTATTTTT-TTC
36632376 TTATTTTCTTCAACTTATTTTGTTTC
1 TTATTTT-TTCAACTTATTTT-TTTC
* *
36632402 TTATCTTTTGAACTATATTTTTTTC
1 TTATTTTTTCAACT-TATTTTTTTC
36632427 T
1 T
36632428 ATGGTTGTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
24 7 0.16
25 15 0.33
26 22 0.49
27 1 0.02
ACGTcount: A:0.18, C:0.11, G:0.03, T:0.68
Consensus pattern (24 bp):
TTATTTTTTCAACTTATTTTTTTC
Found at i:36636560 original size:22 final size:22
Alignment explanation
Indices: 36636532--36636574 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36636522 AACTTAATAC
*
36636532 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
36636554 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
36636575 AGGAGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:36636585 original size:30 final size:30
Alignment explanation
Indices: 36636549--36636609 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
36636539 TTGATTGAAT
*
36636549 GTAATACATTTATTAATTGAATGTAAAGGA
1 GTAATACATTTATTAATTGAATGCAAAGGA
36636579 GTAATACATTTATTAATTGAATGCAAAGGA
1 GTAATACATTTATTAATTGAATGCAAAGGA
36636609 G
1 G
36636610 CTTATAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.34
Consensus pattern (30 bp):
GTAATACATTTATTAATTGAATGCAAAGGA
Found at i:36642088 original size:30 final size:30
Alignment explanation
Indices: 36642054--36642114 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36642044 TCCTTAACTC
36642054 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36642084 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36642114 A
1 A
36642115 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36646004 original size:11 final size:11
Alignment explanation
Indices: 36645988--36646017 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
36645978 AGTCGAATAG
36645988 ATTATTTTATT
1 ATTATTTTATT
36645999 ATTATTTTATT
1 ATTATTTTATT
36646010 ATTATTTT
1 ATTATTTT
36646018 GATGTTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:36647345 original size:50 final size:48
Alignment explanation
Indices: 36647148--36647416 Score: 177
Period size: 46 Copynumber: 5.7 Consensus size: 48
36647138 GGTGTGAGCC
* * * * * **
36647148 AGTGTAAGACCATGTTTGGGACATGGCATCGGGATTGAGA-CGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGATATGGAAAGCT
* * *
36647196 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-C--TCAAGACATAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGAT-ATG-GA-AAGCT
* *
36647242 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGAT-G--TG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACGATATGGAAAGCT
*
36647285 GAGTGTAAGACCATGTCTGGGGCATGGCATCGGCACGGATATGCGAAAGCT
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GATATG-GAAAGCT
* ** * * *
36647336 AGTGTAAGACCATGTCTGGGACATGACATCAACCTCGATAAT-GATAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGAT-ATGGAAAGCT
*
36647385 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
36647417 TAACTTACCC
Statistics
Matches: 174, Mismatches: 28, Indels: 38
0.73 0.12 0.16
Matches are distributed among these distances:
43 2 0.01
44 10 0.06
45 16 0.09
46 51 0.29
47 13 0.07
48 11 0.06
49 34 0.20
50 32 0.18
51 5 0.03
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATGGAAAGCT
Found at i:36647399 original size:99 final size:94
Alignment explanation
Indices: 36647237--36647416 Score: 236
Period size: 99 Copynumber: 1.9 Consensus size: 94
36647227 CTCAAGACAT
** * **
36647237 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTGAGTGTAAGACCATGTC
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAAATGTGCCAGTGTAAGACCATGTC
* *
36647302 TGGGGCATGGCATCGGCACGGATATGCGA
66 TAGGACATGGCATCGGCACGGATATGCGA
36647331 AAGCTAGTGTAAGACCATGTCTGGGACATGACATCAACCT-CGATAATGATAGCCAGTGTAAGAC
1 AAGCTAGTGTAAGA-CATGTCTGGGACATG-CATC-ACCTACGA-AATG-T-GCCAGTGTAAGAC
36647395 CATGTCTAGGACATGGCATCGG
60 CATGTCTAGGACATGGCATCGG
36647417 TAACTTACCC
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
94 14 0.19
95 15 0.21
96 7 0.10
97 5 0.07
98 1 0.01
99 31 0.42
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.22
Consensus pattern (94 bp):
AAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAAATGTGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCACGGATATGCGA
Found at i:36650856 original size:69 final size:68
Alignment explanation
Indices: 36650649--36650885 Score: 222
Period size: 69 Copynumber: 3.4 Consensus size: 68
36650639 TATGTCCCTT
* ** *
36650649 CCAAAAATAGTTAGCACGAGCTCAAGCTCCAAATTATAACCTTAAGGCTCAAAAGTTCAATATTG
1 CCAAAAATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCGCAGGTTCAATATTG
*
36650714 CAG
66 TAG
* * ** * * * *
36650717 CCCCAAAATTAATTAGTGCGAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATAC
1 --CCAAAAATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCGCAGGTTCAATAT
*
36650782 CGTAG
64 TGTAG
* * * * *
36650787 CTAACAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGCAGGTTCAATATT
1 CCAA-AAATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCGCAGGTTCAATATT
36650852 GTAG
65 GTAG
* * ** *
36650856 CCCCAAAACAGTTAGCGTGAGTTCAAGCTC
1 -CCAAAAATAGTTAGCACGAGCTCAAGCTC
36650886 TCAACTATAA
Statistics
Matches: 131, Mismatches: 34, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
68 3 0.02
69 72 0.55
70 56 0.43
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (68 bp):
CCAAAAATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCGCAGGTTCAATATTG
TAG
Found at i:36650952 original size:70 final size:70
Alignment explanation
Indices: 36650652--36651183 Score: 325
Period size: 70 Copynumber: 7.6 Consensus size: 70
36650642 GTCCCTTCCA
** * * * * * * ***
36650652 AAAATAGTTAGCACGAGCTCAAGCTCCAAATTATAACCTTAAGGCTCAAAAGTTCAATATTGC-A
1 AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACAA
*
36650716 GCCCC
66 CCCCC
* * * ** * ** * **
36650721 AAAATTAATTAGTGCGAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATACCGTA
1 AAAA-TAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACA
* ***
36650786 GCTAAC
65 ACCCCC
** * * * * ****
36650792 -AAATAGTTAGCAC-AAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGCAGGTTCAATA-TTGT
1 AAAATAGTTAGTGCGAA-CTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACA
*
36650854 AGCCCC
65 ACCCCC
* * * ** * * * * *
36650860 AAAACAGTTAGCGTGAGTTCAAGCTCTCAACTATAACTGTAAGGCTTACAAGTTTAATACCACAA
1 AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACAA
36650925 CCCCC
66 CCCCC
* * *
36650930 AAAATAGTTAGTGCAAACTCAAGCTCCCAATTGTAGCTTTAAGGCTCACAAGTTCAATACCACAA
1 AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACAA
*
36650995 ACCCC
66 CCCCC
* * * * * * * **
36651000 AAAAGAGTTAGTGTGAGCTCAATCTCCTAACTGTGACTTTAAGGCTCACAAGTTTAATACCGTAA
1 AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACAA
*
36651065 CCTCC
66 CCCCC
** ** * * * * *
36651070 AAAATAGTTAACGCGGCCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATACCGCAA
1 AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACAA
* *
36651135 CCTCT
66 CCCCC
* * * *
36651140 AAGATAGTTAGTGTGAACTCAAGCTCCCAACTATAGCTTTAAGG
1 AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGG
36651184 TTCATAGGTT
Statistics
Matches: 349, Mismatches: 108, Indels: 11
0.75 0.23 0.02
Matches are distributed among these distances:
68 2 0.01
69 90 0.26
70 256 0.73
71 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (70 bp):
AAAATAGTTAGTGCGAACTCAAGCTCCCAACTGTAACTTTAAGGCTCACAAGTTCAATACCACAA
CCCCC
Found at i:36651075 original size:140 final size:139
Alignment explanation
Indices: 36650652--36651198 Score: 497
Period size: 140 Copynumber: 3.9 Consensus size: 139
36650642 GTCCCTTCCA
* * * * * * * ** *
36650652 AAAATAGTTAGCACGAGCTCAAGCTCCAAATTATAACCTTAAGGCTCAAAAGTTCAATATTGCAG
1 AAAATAGTTAGCGCAAACTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAA
* * ** * * ** * *
36650717 CCCCAAAATTAATTAGTGCGAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATAC
66 CCCCAAAA-TAGTTAGTGTGAGCTCAAGCTCCTAACTATAACTTTAAGGCTCACAAGTTTAATAC
* *
36650782 CGT-AGCT-A
130 CGTAACCTCC
* * * * * ** *
36650790 ACAAATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGCAGGTTCAATATTGTA
1 A-AAATAGTTAGCGCAAACTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCA
* * * * * *
36650855 GCCCCAAAACAGTTAGCGTGAGTTCAAGCT-CTCAACTATAACTGTAAGGCTTACAAGTTTAATA
65 ACCCCAAAATAGTTAGTGTGAGCTCAAGCTCCT-AACTATAACTTTAAGGCTCACAAGTTTAATA
** *
36650919 CCACAACCCCC
129 CCGTAACCTCC
* * *
36650930 AAAATAGTTAGTGCAAACTCAAGCTCCCAATTGTAGCTTTAAGGCTCACAAGTTCAATACCACAA
1 AAAATAGTTAGCGCAAACTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGC-A
* * * *
36650995 ACCCCAAAAGAGTTAGTGTGAGCTCAATCTCCTAACTGTGACTTTAAGGCTCACAAGTTTAATAC
65 ACCCCAAAATAGTTAGTGTGAGCTCAAGCTCCTAACTATAACTTTAAGGCTCACAAGTTTAATAC
36651060 CGTAACCTCC
130 CGTAACCTCC
* *** *
36651070 AAAATAGTTAACGCGGCCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATACCGCAA
1 AAAATAGTTAGCGCAAACTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAA
* * * * * * * *
36651135 CCTCTAAGATAGTTAGTGTGAACTCAAGCTCCCAACTATAGCTTTAAGGTTCATAGGTTTAATA
66 CC-CCAAAATAGTTAGTGTGAGCTCAAGCTCCTAACTATAACTTTAAGGCTCACAAGTTTAATA
36651199 TTGCCGTCTT
Statistics
Matches: 334, Mismatches: 68, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
137 2 0.01
138 42 0.13
139 122 0.37
140 166 0.50
141 2 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (139 bp):
AAAATAGTTAGCGCAAACTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAA
CCCCAAAATAGTTAGTGTGAGCTCAAGCTCCTAACTATAACTTTAAGGCTCACAAGTTTAATACC
GTAACCTCC
Found at i:36653431 original size:43 final size:42
Alignment explanation
Indices: 36653336--36653444 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
36653326 TCAATGTATC
* * *
36653336 TGTCCCAGACAGGGTCTTACACGAAATCAGATACGATGCCAA
1 TGTCCCAGACACGGTCTTACACGAAATCAAATACGAGGCCAA
* * *
36653378 TGTCCTAGACATGGTCTTACACGTAAATCTCAAAT-CGAGGCC-G
1 TGTCCCAGACACGGTCTTACACG-AAA--TCAAATACGAGGCCAA
36653421 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
36653445 TATCTCGGAT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
42 22 0.39
43 24 0.42
44 6 0.11
45 5 0.09
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (42 bp):
TGTCCCAGACACGGTCTTACACGAAATCAAATACGAGGCCAA
Found at i:36655697 original size:14 final size:14
Alignment explanation
Indices: 36655678--36655710 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
36655668 ATGCAAAAAA
36655678 AAAAAAAGA-AGAAG
1 AAAAAAAGATAG-AG
36655692 AAAAAAAGATAGAG
1 AAAAAAAGATAGAG
36655706 AAAAA
1 AAAAA
36655711 TTTAAAACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (14 bp):
AAAAAAAGATAGAG
Found at i:36656354 original size:19 final size:20
Alignment explanation
Indices: 36656314--36656357 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
36656304 TACCAGTCCT
* *
36656314 ATGAATAGTAGGGTCAACTC
1 ATGAATAGTAGAGTCAAATC
36656334 ATGAATAGT-GAGTCAAATC
1 ATGAATAGTAGAGTCAAATC
36656353 ATGAA
1 ATGAA
36656358 CAATGATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (20 bp):
ATGAATAGTAGAGTCAAATC
Found at i:36656809 original size:80 final size:80
Alignment explanation
Indices: 36656725--36656878 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 80
36656715 ATTTGAGGGA
* * * * *
36656725 GTAAGCCCCTC-AAAT-TAAAATTTTCAATTCAGTCCTCTTATAAATAAAGAAATTATAACTTAA
1 GTAAG-CCCTCAAAATGAAAAATATTCAATTCAATACTCTTATAAATAAAG-AA-TATAAATTAA
36656788 TATATA-TAAAACTACAC
63 TATATAGTAAAACTACAC
* *
36656805 GTAAGCCCTCAAAATGAAAAATATTCAATTCAATATTTTTATAAATAAAGAATATAAATTAATAT
1 GTAAGCCCTCAAAATGAAAAATATTCAATTCAATACTCTTATAAATAAAGAATATAAATTAATAT
*
36656870 TTAGTAAAA
66 ATAGTAAAA
36656879 TTGTATTTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
79 19 0.30
80 16 0.25
81 28 0.44
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (80 bp):
GTAAGCCCTCAAAATGAAAAATATTCAATTCAATACTCTTATAAATAAAGAATATAAATTAATAT
ATAGTAAAACTACAC
Found at i:36657349 original size:14 final size:14
Alignment explanation
Indices: 36657330--36657358 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36657320 CTTAATGAGA
36657330 TAGCTTTGAGATTT
1 TAGCTTTGAGATTT
36657344 TAGCTTTGAGATTT
1 TAGCTTTGAGATTT
36657358 T
1 T
36657359 CTCAAAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.52
Consensus pattern (14 bp):
TAGCTTTGAGATTT
Found at i:36661565 original size:46 final size:44
Alignment explanation
Indices: 36661461--36661568 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
36661451 TGTCTTTGAC
** * * *
36661461 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
36661505 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
36661551 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
36661569 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:36668942 original size:46 final size:44
Alignment explanation
Indices: 36668838--36668945 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
36668828 TGTCTTTGAC
** * * *
36668838 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
36668882 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
36668928 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
36668946 TTTCGTTCTG
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:36678561 original size:51 final size:49
Alignment explanation
Indices: 36678428--36678571 Score: 180
Period size: 49 Copynumber: 2.9 Consensus size: 49
36678418 TATTGTGAGG
* * * *
36678428 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
* * *
36678477 TCGCATGTGTAGTACTAATTGCAGGCTACTATGCGTACCCGATAACTTCGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAA-TT-GA
** *
36678528 TCATGTGTGTAGTACTAAGTGCAGGCTATTATGCGTACCAGATA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
36678572 GCTTTGGATA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 40 0.49
50 2 0.02
51 39 0.48
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (49 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAATTGA
Found at i:36681379 original size:15 final size:15
Alignment explanation
Indices: 36681350--36681394 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
36681340 AGTGCTGTAA
36681350 ATGGTATTTCCTTATC
1 ATGG-ATTTCCTTATC
*
36681366 ATGGATTTCTTTATC
1 ATGGATTTCCTTATC
*
36681381 TTGGATTTCCTTAT
1 ATGGATTTCCTTAT
36681395 TCTGGGCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (15 bp):
ATGGATTTCCTTATC
Found at i:36683533 original size:51 final size:51
Alignment explanation
Indices: 36683408--36683557 Score: 196
Period size: 51 Copynumber: 3.0 Consensus size: 51
36683398 TATTATGAGG
* * * * *
36683408 TCACGTGTGTAGTACTAATTGCAGGCTATTACGTGTACCCGATAA--TTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
* * *
36683457 TCGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
* *
36683508 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTTG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTG
36683558 GCTACAAGAG
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 38 0.44
51 48 0.56
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTTGA
Found at i:36686823 original size:40 final size:40
Alignment explanation
Indices: 36686745--36687005 Score: 400
Period size: 40 Copynumber: 6.5 Consensus size: 40
36686735 ACCCAAGTAT
* *
36686745 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
36686784 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
36686824 CTTCGGGACTTAGCCCGGATATAGTCATTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
36686864 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* **
36686904 CTTCGGGACTTAGCCCGGATATGGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
36686944 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
36686984 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36687006 CATCCGAATA
Statistics
Matches: 200, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
39 11 0.05
40 188 0.94
41 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36686976 original size:120 final size:120
Alignment explanation
Indices: 36686745--36687005 Score: 461
Period size: 120 Copynumber: 2.2 Consensus size: 120
36686735 ACCCAAGTAT
* *
36686745 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
36686809 CACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCATTAGCACAAATGC
66 CACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
36686864 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATATGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
36686929 CACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 CACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
36686984 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
36687006 CATCCGAATA
Statistics
Matches: 135, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
119 12 0.09
120 123 0.91
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:36689803 original size:5 final size:5
Alignment explanation
Indices: 36689793--36689836 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
36689783 TTGTGTGTTC
*
36689793 TTTAT TTTATT TTTAT TTT-T TTATTT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTA-T TTTAT TTTAT TT-TAT TTTAT TTTAT TTTAT TTT
36689837 CTCAAATTGG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
4 3 0.09
5 24 0.69
6 8 0.23
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTAT
Found at i:36689810 original size:26 final size:25
Alignment explanation
Indices: 36689781--36689835 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
36689771 CCATTTAAAA
*
36689781 ATTTGTGTGTTCTTTATTTTATTTTT
1 ATTTGTGTATTCTTTATTTTA-TTTT
* * *
36689807 ATTTTTTTATTTTTTATTTTATTTT
1 ATTTGTGTATTCTTTATTTTATTTT
36689832 ATTT
1 ATTT
36689836 TCTCAAATTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (25 bp):
ATTTGTGTATTCTTTATTTTATTTT
Found at i:36694274 original size:5 final size:5
Alignment explanation
Indices: 36694264--36694295 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
36694254 TTGTGTGTTC
36694264 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
36694296 CACATCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:36694278 original size:9 final size:9
Alignment explanation
Indices: 36694264--36694294 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
36694254 TTGTGTGTTC
36694264 TTTATTTTA
1 TTTATTTTA
36694273 TTTATTTTA
1 TTTATTTTA
36694282 TTTTATTTTA
1 -TTTATTTTA
36694292 TTT
1 TTT
36694295 TCACATCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:36703691 original size:49 final size:49
Alignment explanation
Indices: 36703613--36703858 Score: 285
Period size: 49 Copynumber: 5.0 Consensus size: 49
36703603 GTAGCCGAAG
* *
36703613 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
36703662 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
36703712 CCATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * * * *
36703762 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCAA
1 -CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * * *
36703812 CAATCTAGTACACGTAGTAGCCTTCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
36703859 TCACAATAGC
Statistics
Matches: 163, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 78 0.48
50 47 0.29
51 38 0.23
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:36708301 original size:44 final size:42
Alignment explanation
Indices: 36708201--36708300 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
36708191 CACGGCCTGA
* **
36708201 CACACGGGTGTGTGTGGCATTTTTTAGAGCACATGGACTAGC
1 CACACGGGTGTGTGTGGCACTTTTTAGAGCACACAGACTAGC
*
36708243 CACACGGGTGTGTGTGGCACTTTTTAGGGCACACAGACTAGC
1 CACACGGGTGTGTGTGGCACTTTTTAGAGCACACAGACTAGC
*
36708285 CACACGGGCGTGTGTG
1 CACACGGGTGTGTGTG
36708301 TTGGCCGTGT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.20, C:0.22, G:0.33, T:0.25
Consensus pattern (42 bp):
CACACGGGTGTGTGTGGCACTTTTTAGAGCACACAGACTAGC
Found at i:36711507 original size:2 final size:2
Alignment explanation
Indices: 36711500--36711534 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
36711490 TGTTGGTTTG
36711500 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
36711535 AACATGTGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:36712450 original size:19 final size:20
Alignment explanation
Indices: 36712423--36712465 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
36712413 TGATTAAGTT
*
36712423 TTAATTAATTAAAG-TTTAA
1 TTAAGTAATTAAAGATTTAA
36712442 TTAAGTAATTAAAGATTTAA
1 TTAAGTAATTAAAGATTTAA
36712462 TTAA
1 TTAA
36712466 CGTATATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
TTAAGTAATTAAAGATTTAA
Found at i:36712712 original size:18 final size:18
Alignment explanation
Indices: 36712689--36712724 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36712679 AAGTTTTTGA
36712689 AAGTTTTCATTGTTGTTT
1 AAGTTTTCATTGTTGTTT
36712707 AAGTTTTCATTGTTGTTT
1 AAGTTTTCATTGTTGTTT
36712725 TCTTGAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (18 bp):
AAGTTTTCATTGTTGTTT
Found at i:36715479 original size:42 final size:43
Alignment explanation
Indices: 36715407--36715506 Score: 130
Period size: 42 Copynumber: 2.3 Consensus size: 43
36715397 GTTTGTTTGA
* * * *
36715407 AAAAAACGCCGCTAAAAATCATGACTTTTAG-GGCACTTTTTT
1 AAAAAACGCCGCTAAAAACCAGGACCTTTAGCGGCACTTTTAT
* * *
36715449 AAAAAACGCCGCTAAAGACCGGGACCTTTAGCGGCGCTTTTAT
1 AAAAAACGCCGCTAAAAACCAGGACCTTTAGCGGCACTTTTAT
36715492 AAAAAACGCCGCTAA
1 AAAAAACGCCGCTAA
36715507 TTTGCCCAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 26 0.52
43 24 0.48
ACGTcount: A:0.36, C:0.23, G:0.18, T:0.23
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAAACCAGGACCTTTAGCGGCACTTTTAT
Found at i:36715838 original size:18 final size:21
Alignment explanation
Indices: 36715800--36715847 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
36715790 TTCTGTTCTG
36715800 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCTCGCTGCTGC
36715821 CTCCGCCTCCCGT-GCTGCTGC
1 CTCCGCCTCCC-TCGCTGCTGC
36715842 CTCCGC
1 CTCCGC
36715848 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.00, C:0.56, G:0.21, T:0.23
Consensus pattern (21 bp):
CTCCGCCTCCCTCGCTGCTGC
Found at i:36721154 original size:79 final size:81
Alignment explanation
Indices: 36720991--36721170 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 81
36720981 TCGTTCAAAT
* * * *
36720991 GCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCTTTCGGGACTTAACCCAGATTT
1 GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATAT
* *
36721055 AGTAACTCGCACCAAT
66 AGTAACTAGCACCAAG
** *
36721071 GCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATA
1 GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGATA
**
36721133 TAGTCATTTAGCA-CAAG
65 TAGT-AACTAGCACCAAG
36721150 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
36721171 CATCATTCGA
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 56 0.66
80 26 0.31
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
GCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCAGATAT
AGTAACTAGCACCAAG
Found at i:36721170 original size:40 final size:40
Alignment explanation
Indices: 36720967--36721170 Score: 211
Period size: 40 Copynumber: 5.1 Consensus size: 40
36720957 CGGAATTTAA
** *
36720967 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36721007 CCGGTTATAGTAACTCGCACAAATGCTTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
36721047 CCAGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
36721086 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
** * *
36721126 CCGGATATAGTCATTTAGCAC-AAGGCCTTCGGGACTTAGC
1 CCGGATATAGT-AACTCGCACAAATGCCTTCGGGACTTAGC
36721166 CCGGA
1 CCGGA
36721171 CATCATTCGA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.24
40 92 0.68
41 10 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:36724263 original size:40 final size:40
Alignment explanation
Indices: 36724218--36724298 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
36724208 TGCATCCCAC
*
36724218 ATCATACCTTCCATGTCATCTTCTTTAACATACTGACGGT
1 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
36724258 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
1 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
36724298 A
1 A
36724299 ACCACTATAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.26, C:0.28, G:0.10, T:0.36
Consensus pattern (40 bp):
ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
Found at i:36724774 original size:9 final size:9
Alignment explanation
Indices: 36724760--36724887 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
36724750 ATGTATTAGT
36724760 TAAGTTATG
1 TAAGTTATG
36724769 TAAGTTGTTATG
1 TAA---GTTATG
*
36724781 TACGTTATG
1 TAAGTTATG
*
36724790 TGAGTTATG
1 TAAGTTATG
*
36724799 TAAATTATG
1 TAAGTTATG
36724808 TAAGTTATG
1 TAAGTTATG
*
36724817 TGAGTTATG
1 TAAGTTATG
36724826 TAAGTTGTTATG
1 TAA---GTTATG
*
36724838 TAAATTATG
1 TAAGTTATG
*
36724847 TAAGTTATA
1 TAAGTTATG
*
36724856 TGAGTTATG
1 TAAGTTATG
36724865 TAAGTTATG
1 TAAGTTATG
* *
36724874 TAATTTATT
1 TAAGTTATG
36724883 TAAGT
1 TAAGT
36724888 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36724887 original size:57 final size:57
Alignment explanation
Indices: 36724760--36724887 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
36724750 ATGTATTAGT
** * *
36724760 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
36724817 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
36724874 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
36724888 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:36726093 original size:183 final size:183
Alignment explanation
Indices: 36725785--36726723 Score: 1761
Period size: 183 Copynumber: 5.1 Consensus size: 183
36725775 CCTAGAACAG
36725785 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36725850 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36725915 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36725968 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36726033 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36726098 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36726151 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
36726216 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGTAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
*
36726281 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAAACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
* * *
36726334 ATGTAAGATTACAAGAGTAGCACCAAATATATTTCAGCTTAAGCAAATATAAAAAATTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36726399 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36726464 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
* * *
36726517 ATGTAAGATTACAAGAGTAGCACCAAATATATTTCAGCTTAAGCAAATATAAAAAATTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
36726582 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36726647 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
* * *
36726700 ATGTAGGATTATAAGTGTAACACC
1 ATGTAAGATTATAAGAGTAGCACC
36726724 CCGTACCCGA
Statistics
Matches: 742, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
183 742 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:36728246 original size:40 final size:40
Alignment explanation
Indices: 36728086--36728246 Score: 171
Period size: 40 Copynumber: 4.0 Consensus size: 40
36728076 GATCTAACCA
* * * *
36728086 GATATAACCACAAGCACAACTGCCTTCGGGTCTTAACCCG
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* * *** * *
36728126 AATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* *
36728166 GATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCG
1 GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
* *
36728206 GATATAATC-ACTAGCATAAATGCCTTCGGGACTTAGCCCG
1 GATATAA-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
36728246 G
1 G
36728247 GTATCATTCA
Statistics
Matches: 98, Mismatches: 22, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
40 97 0.99
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GATATAACAACTAGCACAAATGCCTTCGGGTCTTAGCCCG
Found at i:36730504 original size:149 final size:148
Alignment explanation
Indices: 36730234--36730531 Score: 542
Period size: 149 Copynumber: 2.0 Consensus size: 148
36730224 CCTTAATCAT
**
36730234 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTATTATTGACTTAAA
1 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTATTATCAACTTAAA
36730299 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCCTT
66 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCT-CTT
36730364 TTTTACAATTTATTGCATA
130 TTTTACAATTTATTGCATA
* * *
36730383 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACTAGTTGTTATCAACTTAAA
1 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTATTATCAACTTAAA
36730448 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
66 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
36730513 TTTACAATTTATTGCATA
131 TTTACAATTTATTGCATA
36730531 A
1 A
36730532 CATTTCCGAG
Statistics
Matches: 144, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
148 23 0.16
149 121 0.84
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (148 bp):
AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTATTATCAACTTAAA
AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
TTTACAATTTATTGCATA
Found at i:36733404 original size:21 final size:21
Alignment explanation
Indices: 36733349--36733405 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
36733339 CTTAAAAATT
* *
36733349 AAATCATAAACCCCACACCCC
1 AAATCATAAACCCTAAACCCC
* *
36733370 AAACCCTAAACCCTAAACCCC
1 AAATCATAAACCCTAAACCCC
36733391 AAATCATAAACCCTA
1 AAATCATAAACCCTA
36733406 GAGCTTAGAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.46, C:0.42, G:0.00, T:0.12
Consensus pattern (21 bp):
AAATCATAAACCCTAAACCCC
Found at i:36733444 original size:2 final size:2
Alignment explanation
Indices: 36733437--36733472 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
36733427 TAAACCCTAA
36733437 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36733473 TACAAGGGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36733736 original size:14 final size:14
Alignment explanation
Indices: 36733664--36733742 Score: 58
Period size: 14 Copynumber: 5.9 Consensus size: 14
36733654 CTAGTTAACT
*
36733664 CTTAAACCTTAAAC
1 CTTAAACCATAAAC
* * *
36733678 CCTAAACCATATAT
1 CTTAAACCATAAAC
36733692 CTTAAACCAT--A-
1 CTTAAACCATAAAC
* *
36733703 GTT-AACTCATAAAT
1 CTTAAAC-CATAAAC
36733717 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
36733731 CTTAAACTATAA
1 CTTAAACCATAA
36733743 TGATAATTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
10 3 0.06
11 5 0.10
12 1 0.02
13 1 0.02
14 38 0.75
15 3 0.06
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:36733998 original size:40 final size:41
Alignment explanation
Indices: 36733901--36734003 Score: 163
Period size: 41 Copynumber: 2.5 Consensus size: 41
36733891 GTTATATGAC
**
36733901 TTTTAGCATCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
* *
36733942 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
36733982 TTTTAGCGGCGTTTTACCAAAA
1 TTTTAGCGGCGTTTTACCAAAA
36734004 ATGCCAGTAT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
40 23 0.40
41 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
Found at i:36734025 original size:40 final size:40
Alignment explanation
Indices: 36733901--36734036 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 40
36733891 GTTATATGAC
** * * *
36733901 TTTTAGCATCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCT-AT
* * *
36733942 CTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTAT
* * * *
36733982 TTTTAGCGGCGTTTTACCAAAAATGCCAG-TATTGTTTTAT
1 TTTTAGCGGCGTTTTACCAAAAACGCC-GCTAATGCTCTAT
36734022 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
36734037 TGGTAAAACG
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
40 48 0.58
41 35 0.42
ACGTcount: A:0.21, C:0.21, G:0.20, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTAATGCTCTAT
Found at i:36735927 original size:22 final size:22
Alignment explanation
Indices: 36735893--36735935 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36735883 CAACACTTCC
*
36735893 CATATATTGTGATAATTTTGTA
1 CATATATTATGATAATTTTGTA
*
36735915 CATATTTTATGATAATTTTGT
1 CATATATTATGATAATTTTGT
36735936 CTTCATCGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (22 bp):
CATATATTATGATAATTTTGTA
Found at i:36741688 original size:18 final size:18
Alignment explanation
Indices: 36741665--36741703 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
36741655 TCTCCAGCAA
36741665 TATATTATTAGGAGATAT
1 TATATTATTAGGAGATAT
*
36741683 TATATTATTATGAGATAT
1 TATATTATTAGGAGATAT
36741701 TAT
1 TAT
36741704 CTTTAGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.13, T:0.49
Consensus pattern (18 bp):
TATATTATTAGGAGATAT
Found at i:36746249 original size:44 final size:44
Alignment explanation
Indices: 36746158--36746267 Score: 118
Period size: 44 Copynumber: 2.5 Consensus size: 44
36746148 ATGCCATTGA
* * * * *
36746158 CCCAGACAGGGTCTTACATG-AA-ATCAAATACAATGCTGATGT
1 CCCAGACATGGTCTAACACGAAATATCAAATACAATGCTAACGT
*
36746200 CCCAGACATGGTCTAACACGTAAATATCAAAT-CGATGCTAACGT
1 CCCAGACATGGTCTAACACG-AAATATCAAATACAATGCTAACGT
* *
36746244 CCCAGACGTGGTCTTACACGAAAT
1 CCCAGACATGGTCTAACACGAAAT
36746268 CACCTATGTC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
42 17 0.30
43 4 0.07
44 29 0.51
45 7 0.12
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (44 bp):
CCCAGACATGGTCTAACACGAAATATCAAATACAATGCTAACGT
Found at i:36755008 original size:40 final size:40
Alignment explanation
Indices: 36754963--36755092 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
36754953 CGGAATACAA
36754963 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
36755003 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * * *
36755043 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
36755083 CCGGATATAA
1 CCGGATATAA
36755093 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:36763035 original size:40 final size:40
Alignment explanation
Indices: 36762990--36763156 Score: 178
Period size: 40 Copynumber: 4.2 Consensus size: 40
36762980 CGGAATACAA
36762990 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* * *
36763030 CCGGATAGAACGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
36763070 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
*** * * * *
36763110 CCGGATATAATTTCCAGCA-TAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
36763149 CCGGATAT
1 CCGGATAT
36763157 CATTCAATTG
Statistics
Matches: 107, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
39 25 0.23
40 82 0.77
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:36773636 original size:29 final size:29
Alignment explanation
Indices: 36773535--36773636 Score: 143
Period size: 29 Copynumber: 3.6 Consensus size: 29
36773525 CCCTCCGACT
** * * *
36773535 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
36773564 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36773592 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36773621 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
36773637 ATCTCATCAC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 25 0.38
29 40 0.62
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:36773655 original size:57 final size:57
Alignment explanation
Indices: 36773544--36773655 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 57
36773534 TCGCACACCC
* * ** * * *
36773544 AGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCAATATTTCCAGCACGCACACTT
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATATCCACCACACACACTT
* *
36773601 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATCTCAT-CACCATACACAC
1 AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATAT-ATCCACCACACACAC
36773656 GTATTGCCCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
57 44 0.98
58 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.13, T:0.28
Consensus pattern (57 bp):
AGTGCCATATATTTCCAGCACGCACACTTAGTGCCAATATATCCACCACACACACTT
Found at i:36789163 original size:47 final size:46
Alignment explanation
Indices: 36788855--36789173 Score: 248
Period size: 47 Copynumber: 6.8 Consensus size: 46
36788845 TTTGTGTGCT
* *
36788855 AGTGTAAGA-CGTGTCTAGGACAT-GCATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGATGAGAGCC
* *
36788901 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--ATGAGAGCC
* * * *
36788949 AGTGTAAGA-CACGTCTAGGACAT-G-ATTC-AGCCTCGA-GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGA-CATTGATGA-G--AGCC
*
36788995 AGTGTAAGA-CATGTCTGGGACAT-GCATTGACCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-T--CGACATTGATGAGAGCC
* * * *
36789041 AGTGTAAGCCCATGTCTGGGACATGGCGTCGACATAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--A--TGAGAGCC
36789091 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAT-GA-GAGCC
* *
36789138 AGTGTAAGACCATGTCTGGGACATGGTATCGGCATT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATT
36789174 ATACCTTATG
Statistics
Matches: 224, Mismatches: 24, Indels: 48
0.76 0.08 0.16
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 13 0.06
46 54 0.24
47 79 0.35
48 28 0.12
49 7 0.03
50 39 0.17
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATGAGAGCC
Found at i:36791033 original size:43 final size:43
Alignment explanation
Indices: 36790985--36791067 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
36790975 GAGATATGTG
* **
36790985 GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCTC
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATTATGGATGCTC
36791028 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATTATGGATG
1 GCATCCGAGCTCATTGAGAGGTCCAAGTTCATTATGGATG
36791068 TGTTTCATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCATTGAGAGGTCCAAGTTCATTATGGATGCTC
Found at i:36793900 original size:38 final size:38
Alignment explanation
Indices: 36793849--36793927 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
36793839 TTACAACTTA
*
36793849 AACCACACCAAAATTTCCACGCCCAATGTAGTCCATAC
1 AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
*
36793887 AACCACACCAAAATTTCCACGCCTAATGTAATCCATAC
1 AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
36793925 AAC
1 AAC
36793928 TTTATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.35, G:0.06, T:0.19
Consensus pattern (38 bp):
AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
Found at i:36795515 original size:68 final size:68
Alignment explanation
Indices: 36795439--36795663 Score: 254
Period size: 68 Copynumber: 3.3 Consensus size: 68
36795429 ATAGCCTAAT
* * * * **
36795439 TATGGTCTTACACATTATAATCTCATCTTTACTATCCTGAATGACTTCATATGTTACCATATCCC
1 TATGGTCTTACACATTATGATCTCATGTTTAATGTCCTGACGGACTTCATATGTTACCATATCCC
*
36795504 AAT
66 AAC
* * * * ** **
36795507 TATTGTCTTACACATTATGATATCATGTTTATTGTCCTGACGGACTTCGTATGTTTTCATGGCCC
1 TATGGTCTTACACATTATGATCTCATGTTTAATGTCCTGACGGACTTCATATGTTACCATATCCC
36795572 AAC
66 AAC
* * * *
36795575 TATGGTATTACACATTATGATCTTATGTTTAATGTCCTGGCGGACTTCATATGTTGCCATAGT-C
1 TATGGTCTTACACATTATGATCTCATGTTTAATGTCCTGACGGACTTCATATGTTACCATA-TCC
*
36795639 CAGC
65 CAAC
36795643 TATGGTCTTACACATTATGAT
1 TATGGTCTTACACATTATGAT
36795664 GACATGCACC
Statistics
Matches: 129, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
68 129 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.40
Consensus pattern (68 bp):
TATGGTCTTACACATTATGATCTCATGTTTAATGTCCTGACGGACTTCATATGTTACCATATCCC
AAC
Found at i:36795651 original size:136 final size:136
Alignment explanation
Indices: 36795413--36795663 Score: 324
Period size: 136 Copynumber: 1.8 Consensus size: 136
36795403 TGTCCTGGTA
* * * * *
36795413 GACTTTGTATGTTGTCATAGCCTAATTATGGTCTTACACATTATAATCTCATCTTTACTATCCTG
1 GACTTCGTATGTTGTCATAGCCCAACTATGGTATTACACATTATAATCTCATCTTTAATATCCTG
* * *
36795478 AATGACTTCATATGTTACCATATCCCAATTATTGTCTTACACATTATGATATCATGTTTATTGTC
66 AAGGACTTCATATGTTACCATATCCCAACTATGGTCTTACACATTATGATATCATGTTTATTGTC
36795543 CTGACG
131 CTGACG
* * * * * *
36795549 GACTTCGTATGTTTTCATGGCCCAACTATGGTATTACACATTATGATCTTATGTTTAATGTCCTG
1 GACTTCGTATGTTGTCATAGCCCAACTATGGTATTACACATTATAATCTCATCTTTAATATCCTG
** * *
36795614 GCGGACTTCATATGTTGCCATAGT-CCAGCTATGGTCTTACACATTATGAT
66 AAGGACTTCATATGTTACCATA-TCCCAACTATGGTCTTACACATTATGAT
36795664 GACATGCACC
Statistics
Matches: 96, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
136 95 0.99
137 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (136 bp):
GACTTCGTATGTTGTCATAGCCCAACTATGGTATTACACATTATAATCTCATCTTTAATATCCTG
AAGGACTTCATATGTTACCATATCCCAACTATGGTCTTACACATTATGATATCATGTTTATTGTC
CTGACG
Found at i:36800079 original size:26 final size:26
Alignment explanation
Indices: 36800050--36800102 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
36800040 TCAAACATGC
36800050 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
36800076 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
36800102 A
1 A
36800103 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:36801353 original size:12 final size:12
Alignment explanation
Indices: 36801336--36801430 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
36801326 GCCAACTCCT
*
36801336 GCTCCTTGATCA
1 GCTCCTTAATCA
* *
36801348 GCTCCTAAATCT
1 GCTCCTTAATCA
* *
36801360 TCTCCTTTATCA
1 GCTCCTTAATCA
* *
36801372 GCTCCTAAATCC
1 GCTCCTTAATCA
*
36801384 TCTCCGTT-ATCA
1 GCTCC-TTAATCA
* *
36801396 GCTCCTAAATCC
1 GCTCCTTAATCA
*
36801408 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
36801420 GCTCCTAAATC
1 GCTCCTTAATC
36801431 TTCTCCTGAC
Statistics
Matches: 57, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 4 0.07
12 49 0.86
13 4 0.07
ACGTcount: A:0.21, C:0.37, G:0.07, T:0.35
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:36801371 original size:24 final size:24
Alignment explanation
Indices: 36801332--36801437 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 24
36801322 GTCGGCCAAC
*
36801332 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
36801357 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
36801381 TCCTCTCCGTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
36801405 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
36801429 TCTTCTCCT
1 TCCTCTCCT
36801438 GACAGCCTTT
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
24 71 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.38, G:0.07, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:36808884 original size:24 final size:24
Alignment explanation
Indices: 36808843--36808948 Score: 131
Period size: 24 Copynumber: 4.4 Consensus size: 24
36808833 GCCGGCCAAC
* *
36808843 TCCTGCTCCTTGACCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
36808868 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
36808892 TCCTCTCCCTTATCATCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
36808916 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
36808940 GCTTCTCCT
1 TCCTCTCCT
36808949 GATAGCCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
24 68 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.40, G:0.06, T:0.36
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:36814719 original size:56 final size:56
Alignment explanation
Indices: 36814628--36814739 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 56
36814618 TCTTACATGT
* * * *
36814628 AATCACATATCGATGCCACTGTCCTAGATAGGGTCTTACTCGTACACATATATCAG
1 AATCACATATCGATGCCACTGTACTAAACAGGGTCTTACTCGCACACATATATCAG
* *
36814684 AATCACATATCGATGCCAAC-GTATTAAACATGGTCTTACTCGCACACATATATCAG
1 AATCACATATCGATGCC-ACTGTACTAAACAGGGTCTTACTCGCACACATATATCAG
36814740 TGCCATGGTC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
56 47 0.96
57 2 0.04
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (56 bp):
AATCACATATCGATGCCACTGTACTAAACAGGGTCTTACTCGCACACATATATCAG
Found at i:36823109 original size:29 final size:28
Alignment explanation
Indices: 36823076--36823130 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
36823066 ATATAAAAAG
* *
36823076 TTTAAAATAAATAATATGTGAAAAATAAA
1 TTTAAAATAAAGAATATAT-AAAAATAAA
*
36823105 TTTAAAATAGAGAATATATAAAAATA
1 TTTAAAATAAAGAATATATAAAAATA
36823131 TATATATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 7 0.30
29 16 0.70
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (28 bp):
TTTAAAATAAAGAATATATAAAAATAAA
Found at i:36823310 original size:21 final size:18
Alignment explanation
Indices: 36823279--36823317 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 18
36823269 TTAAAATGAT
36823279 AATATATAAAATAATTTAA
1 AATATATAAAAT-ATTTAA
36823298 AATATATGAAAAATATTTAA
1 AATATAT--AAAATATTTAA
36823318 CAAATAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 6 0.33
21 5 0.28
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AATATATAAAATATTTAA
Found at i:36825152 original size:45 final size:45
Alignment explanation
Indices: 36825053--36825449 Score: 311
Period size: 45 Copynumber: 8.9 Consensus size: 45
36825043 GAAGAGATTT
* * * ****
36825053 GTAGCTTCAATCTACTCCACTGGAACTTAAAGGAGATAAAAACTG
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
** * * *
36825098 GTAATTTCAACCTGTTCCACTACAACTTCAAGGAGATAAGGTTTG
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
* * * * * * *
36825143 GTGGCTTCAATCTGCCCCAATGTAATTTCAAGGAAAAAAGGTTT-
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
* * * * **
36825187 GTAACTTCGATCTACTCCACTGAAACTTCAAGGAGATAAGAATTG
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
** * * *
36825232 GTAATTTCAACCTTCTCTACTGCAACTTCAAGGAGATAAGGTTTG
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
* * * * * *
36825277 GTGGCTTCAATCTGCTCCAATGTAATTTCAGGGAGA-AGAGATTT-
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATA-AGGTTTG
* * * **
36825321 GTAGCTTCGATCTACTCCACTGGAACTTCAAGGAGATAAGAATTG
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
* ** *
36825366 GCAATTTCAA-CATGCTTCACTGCAACTTC-AGGAAGATAAGGTTTG
1 GTAGCTTCAATC-TGCTCCACTGCAACTTCAAGG-AGATAAGGTTTG
36825411 GTAGCTTCAATCTGCTCCACTGCAACTTC-AGGAAGATAA
1 GTAGCTTCAATCTGCTCCACTGCAACTTCAAGG-AGATAA
36825450 AATCCACCAT
Statistics
Matches: 269, Mismatches: 76, Indels: 14
0.75 0.21 0.04
Matches are distributed among these distances:
44 71 0.26
45 197 0.73
46 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (45 bp):
GTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGGTTTG
Found at i:36825348 original size:89 final size:89
Alignment explanation
Indices: 36825023--36825449 Score: 308
Period size: 89 Copynumber: 4.8 Consensus size: 89
36825013 CTTCGACTTA
* * *
36825023 CTCCAATGTAATTTCAGGGAGA-AGAGATTTGTAGCTTCAATCTACTCCACTGGAACTTAAAGGA
1 CTCCAATGTAACTTCAAGGAGATA-AGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
**** * *
36825087 GATAAAAACTGGTAATTTCAACCTG
65 GATAAGGTTTGGTAACTTCAATCTG
* * ** * * * * * * *
36825112 TTCCACTACAACTTCAAGGAGATAAGGTTTGGTGGCTTCAATCTGCCCCAATGTAATTTCAAGGA
1 CTCCAATGTAACTTCAAGGAGATAAGATTT-GTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
* * * *
36825177 AAAAAGGTTT-GTAACTTCGATCTA
65 GATAAGGTTTGGTAACTTCAATCTG
* * * ** * * * *
36825201 CTCCACTGAAACTTCAAGGAGATAAGAATTGGTAATTTCAACCTTCTCTACTGCAACTTCAAGGA
1 CTCCAATGTAACTTCAAGGAGATAAG-ATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
**
36825266 GATAAGGTTTGGTGGCTTCAATCTG
65 GATAAGGTTTGGTAACTTCAATCTG
* * *
36825291 CTCCAATGTAATTTCAGGGAGA-AGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGA
1 CTCCAATGTAACTTCAAGGAGATA-AGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGA
** * *
36825355 GATAAGAATTGGCAATTTCAA-CATG
65 GATAAGGTTTGGTAACTTCAATC-TG
* * * * * *
36825380 CTTCACTGCAACTTC-AGGAAGATAAGGTTTGGTAGCTTCAATCTGCTCCACTGCAACTTC-AGG
1 CTCCAATGTAACTTCAAGG-AGATAAGATTT-GTAGCTTCAATCTACTCCACTGGAACTTCAAGG
36825443 AAGATAA
64 -AGATAA
36825450 AATCCACCAT
Statistics
Matches: 256, Mismatches: 72, Indels: 19
0.74 0.21 0.05
Matches are distributed among these distances:
88 3 0.01
89 156 0.61
90 97 0.38
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (89 bp):
CTCCAATGTAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTACTCCACTGGAACTTCAAGGAG
ATAAGGTTTGGTAACTTCAATCTG
Found at i:36825442 original size:134 final size:134
Alignment explanation
Indices: 36825023--36825429 Score: 622
Period size: 134 Copynumber: 3.0 Consensus size: 134
36825013 CTTCGACTTA
* *
36825023 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCAATCTACTCCACTGGAACTTAAAGGAG
1 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* * *
36825088 ATAAAAACTGGTAATTTCAACCTG-TTCCACTACAACTTCAAGGAGATAAGGTTTGGTGGCTTCA
66 ATAAGAATTGGTAATTTCAACCTGCTT-CACTGCAACTTCAAGGAGATAAGGTTTGGTGGCTTCA
36825152 ATCTG
130 ATCTG
* * * * * * *
36825157 CCCCAATGTAATTTCAAGGAAAAAAGGTTTGTAACTTCGATCTACTCCACTGAAACTTCAAGGAG
1 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
*
36825222 ATAAGAATTGGTAATTTCAACCTTC-TCTACTGCAACTTCAAGGAGATAAGGTTTGGTGGCTTCA
66 ATAAGAATTGGTAATTTCAACCTGCTTC-ACTGCAACTTCAAGGAGATAAGGTTTGGTGGCTTCA
36825286 ATCTG
130 ATCTG
36825291 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
1 CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* * *
36825356 ATAAGAATTGGCAATTTCAACATGCTTCACTGCAACTTC-AGGAAGATAAGGTTTGGTAGCTTCA
66 ATAAGAATTGGTAATTTCAACCTGCTTCACTGCAACTTCAAGG-AGATAAGGTTTGGTGGCTTCA
36825420 ATCTG
130 ATCTG
36825425 CTCCA
1 CTCCA
36825430 CTGCAACTTC
Statistics
Matches: 245, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
133 4 0.02
134 239 0.98
135 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.29
Consensus pattern (134 bp):
CTCCAATGTAATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
ATAAGAATTGGTAATTTCAACCTGCTTCACTGCAACTTCAAGGAGATAAGGTTTGGTGGCTTCAA
TCTG
Found at i:36825560 original size:44 final size:43
Alignment explanation
Indices: 36825469--36825594 Score: 105
Period size: 45 Copynumber: 2.8 Consensus size: 43
36825459 TAACTCGTAG
* * * *
36825469 CTTCAATCTGTTCCACTGCAACTCTAGGGA-AGTAAGAGTCGCTAT
1 CTTC-ATCTGCTCCACTGCTACTC-AGGGAGA-TAAGAGTCACAAT
36825514 CTTCGATCTGCTCCACTGCTACTCAGGGAGATAAGA-TCTACAAT
1 CTTC-ATCTGCTCCACTGCTACTCAGGGAGATAAGAGTC-ACAAT
* *
36825558 CTTCAGTCTGCTCC-CTTGCTACTTAAGGAAGATAAGA
1 CTTCA-TCTGCTCCAC-TGCTAC-TCAGGGAGATAAGA
36825595 CTGGTGGCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
43 4 0.06
44 31 0.45
45 34 0.49
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTCATCTGCTCCACTGCTACTCAGGGAGATAAGAGTCACAAT
Found at i:36825775 original size:132 final size:132
Alignment explanation
Indices: 36825501--36825950 Score: 564
Period size: 132 Copynumber: 3.4 Consensus size: 132
36825491 TCTAGGGAAG
* * * * * * * *
36825501 TAAGAGTCGCTATCTTCGATCTGCTCCACTGCTACTCAGGGAGATAAGATCTACAATCTTCAGTC
1 TAAGATTCGCTGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCC
* * * * * * * *
36825566 TGCTCC-CTTGCTACTTAAGGAAGATAAGACTGGTGGCTTAAATCTGCTCCCCTACTACCTCTGG
66 TGCTCCAC-TGCTGC-TCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTTGA
*
36825630 AATA
129 AAGA
* *
36825634 TAAGATTCGCTGTCTTTGATTTGCTCTACTATTGCTTAGGGAGATAAGATCTACAATCTTCAGCC
1 TAAGATTCGCTGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCC
* *
36825699 TGCTCCACTGTTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGTTTCCCTACTACCTTTGAAA
66 TGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTTGAAA
36825764 GA
131 GA
* * *
36825766 TAAGATTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAGCC
1 TAAGATTCGCTGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCC
* * * *
36825831 TACTCCACTGCTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTTCCCTACTACC-TCGAGA
66 TGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTTGA-A
36825895 AGA
130 AGA
** *
36825898 TAAGATTCG-TCGTCTTCAATTTGTTCCACTACTGCTTAGGGAGATAAGATCTA
1 TAAGATTCGCT-GTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTA
36825951 TGAATTCACC
Statistics
Matches: 277, Mismatches: 37, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
131 3 0.01
132 208 0.75
133 65 0.23
134 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (132 bp):
TAAGATTCGCTGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCC
TGCTCCACTGCTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTTGAAA
GA
Found at i:36827234 original size:12 final size:12
Alignment explanation
Indices: 36827219--36827266 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
36827209 TTTTTTTTGA
36827219 TTTTTTTATTA-
1 TTTTTTTATTAT
*
36827230 TTTTTTGATT-T
1 TTTTTTTATTAT
36827241 ATTTTTTTATTAT
1 -TTTTTTTATTAT
*
36827254 TTTTATTATTAT
1 TTTTTTTATTAT
36827266 T
1 T
36827267 ATTATTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 9 0.29
12 21 0.68
13 1 0.03
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTTTTATTAT
Found at i:36827258 original size:9 final size:9
Alignment explanation
Indices: 36827212--36827277 Score: 70
Period size: 9 Copynumber: 7.8 Consensus size: 9
36827202 TCTTCTCTTT
36827212 TTTTTGATT-
1 TTTTT-ATTA
36827221 TTTTTATTA
1 TTTTTATTA
*
36827230 TTTTT-TGA
1 TTTTTATTA
36827238 --TTTATT-
1 TTTTTATTA
36827244 TTTTTATTA
1 TTTTTATTA
36827253 TTTTTATTA
1 TTTTTATTA
*
36827262 TTATTATTA
1 TTTTTATTA
36827271 TTTTTAT
1 TTTTTAT
36827278 CTCAAGGCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
6 3 0.06
7 1 0.02
8 11 0.23
9 33 0.69
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (9 bp):
TTTTTATTA
Found at i:36832006 original size:22 final size:22
Alignment explanation
Indices: 36831963--36832022 Score: 84
Period size: 22 Copynumber: 2.6 Consensus size: 22
36831953 CGAAGAAAAA
36831963 TGAAATAAATGATATAAAACAATT
1 TGAAATAAAT-A-ATAAAACAATT
*
36831987 TGAAATAAATAATAAGACAATT
1 TGAAATAAATAATAAAACAATT
*
36832009 TTAAATAAATAATA
1 TGAAATAAATAATA
36832023 TATATCAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 23 0.68
23 1 0.03
24 10 0.29
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (22 bp):
TGAAATAAATAATAAAACAATT
Found at i:36832479 original size:27 final size:27
Alignment explanation
Indices: 36832401--36832468 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
36832391 AAAAATATTT
* * *
36832401 AATAAATAATATGTA-AAGAAGCTT-TA
1 AATAAATAATATATAGAA-AAACTTAAA
36832427 AATAAATAATATATAGAAAAACTTAAA
1 AATAAATAATATATAGAAAAACTTAAA
*
36832454 AATAAATAATGTATA
1 AATAAATAATATATA
36832469 AAATAATTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 19 0.53
27 17 0.47
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.29
Consensus pattern (27 bp):
AATAAATAATATATAGAAAAACTTAAA
Found at i:36833794 original size:26 final size:24
Alignment explanation
Indices: 36833764--36833813 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
36833754 AAATAAAAAA
*
36833764 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
36833790 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
36833814 TAAACAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:36842375 original size:20 final size:21
Alignment explanation
Indices: 36842331--36842379 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
36842321 CAATTAAATT
* *
36842331 TATTTAAAATAAAAATTTTAA
1 TATTTAAATTAAAAATTTAAA
36842352 -ATTTAAATTAAAAA-TTAAA
1 TATTTAAATTAAAAATTTAAA
36842371 TATTTAAAT
1 TATTTAAAT
36842380 ATTAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTTAAATTAAAAATTTAAA
Found at i:36842393 original size:26 final size:24
Alignment explanation
Indices: 36842336--36842393 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 24
36842326 AAATTTATTT
36842336 AAAATAA--AAATTTTAAATTTAA
1 AAAATAATTAAATTTTAAATTTAA
36842358 ATTAAA-AATTAAATATTTAAATATTAA
1 A--AAATAATTAAAT-TTTAAAT-TTAA
36842385 AAAATAATT
1 AAAATAATT
36842394 TTGATTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
22 1 0.03
23 2 0.07
24 3 0.10
25 7 0.24
26 11 0.38
27 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAATAATTAAATTTTAAATTTAA
Found at i:36842647 original size:21 final size:19
Alignment explanation
Indices: 36842608--36842658 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
36842598 TAAAAAACTT
*
36842608 AAAATTTAAAAATAATATATA
1 AAAATTGAAAAAT-AT-TATA
*
36842629 AAAATTGAAAAATGTTATA
1 AAAATTGAAAAATATTATA
36842648 AAAA-TGAAAAA
1 AAAATTGAAAAA
36842659 AGTATTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 7 0.25
19 8 0.29
20 1 0.04
21 12 0.43
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAATTGAAAAATATTATA
Found at i:36845209 original size:21 final size:20
Alignment explanation
Indices: 36845183--36845223 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
36845173 TATAATGTTT
*
36845183 AATTATTGATGCATATATATA
1 AATTATTAATGCAT-TATATA
*
36845204 AATTATTAATGTATTATATA
1 AATTATTAATGCATTATATA
36845224 CTATATGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (20 bp):
AATTATTAATGCATTATATA
Found at i:36847687 original size:2 final size:2
Alignment explanation
Indices: 36847680--36847725 Score: 51
Period size: 2 Copynumber: 23.0 Consensus size: 2
36847670 AAATAAACAA
*
36847680 AT AT AT AT AT AT -T AGT AT AT AT AT AT AT AT -T AGT GT AT AT AT
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT A-T AT AT AT AT
36847722 AT AT
1 AT AT
36847726 TAGTATAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
1 2 0.05
2 33 0.87
3 3 0.08
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36847701 original size:16 final size:16
Alignment explanation
Indices: 36847680--36847732 Score: 79
Period size: 16 Copynumber: 3.2 Consensus size: 16
36847670 AAATAAACAA
36847680 ATATATATATATTAGTAT
1 ATATATATATATTAG--T
36847698 ATATATATATATTAGT
1 ATATATATATATTAGT
*
36847714 GTATATATATATTAGT
1 ATATATATATATTAGT
36847730 ATA
1 ATA
36847733 ACTAAAAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
16 18 0.55
18 15 0.45
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (16 bp):
ATATATATATATTAGT
Done.