Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 128 of 328
Found at i:36847705 original size:20 final size:18
Alignment explanation
Indices: 36847680--36847725 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
36847670 AAATAAACAA
36847680 ATATATATATATTAGTAT
1 ATATATATATATTAGTAT
*
36847698 ATATATATATATTAGTGT
1 ATATATATATATTAGTAT
36847716 ATATATATAT
1 ATATATATAT
36847726 TAGTATAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (18 bp):
ATATATATATATTAGTAT
Found at i:36852921 original size:14 final size:14
Alignment explanation
Indices: 36852902--36852931 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36852892 TAACGAAAAA
36852902 TACTCTTTAAACAC
1 TACTCTTTAAACAC
36852916 TACTCTTTAAACAC
1 TACTCTTTAAACAC
36852930 TA
1 TA
36852932 AGAAAGATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (14 bp):
TACTCTTTAAACAC
Found at i:36855415 original size:79 final size:81
Alignment explanation
Indices: 36855315--36855497 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
36855305 TACTCGTTCG
* * *
36855315 AATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGTGATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGA
*
36855378 ATTTAGTAAC-TCGCACC
65 ATTTAGTAACTTAGCA-C
* **
36855395 AATGCCTTCAGG-CTTAGCCCGG-GATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGAA
1 AATGCCTTCGGGACTTAGCCCGGTGATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGAA
36855458 TTTAGTAACTTAGCAC
66 TTTAGTAACTTAGCAC
*
36855474 AAAGCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGGACTTAGCCCGGT
36855498 CATCATTCGA
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 4 0.04
79 60 0.67
80 25 0.28
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGTGATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGAA
TTTAGTAACTTAGCAC
Found at i:36855427 original size:39 final size:39
Alignment explanation
Indices: 36855315--36855496 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
36855305 TACTCGTTCG
* *
36855315 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCACA
* *
36855355 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCACA
*
36855395 AATGCCTTCAGG-CTTAGCCCGGGATTAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCACA
* * *
36855434 AATGCCTTC-GGATCTTAGTCCGAATTTAGTAACTTAGCACA
1 AATGCCTTCGGGA-CTTAGCCCGGA-TTAGTAAC-TCGCACA
36855475 AA-GCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
36855497 TCATCATTCG
Statistics
Matches: 123, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 77 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCACA
Found at i:36859535 original size:28 final size:30
Alignment explanation
Indices: 36859453--36859535 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 30
36859443 AAGTTACTCG
* *
36859453 CACAAGCTGACATTATATTAGGGTTGCTCA
1 CACAAGTTGACATTATATTAGGTTTGCTCA
*
36859483 CACAAGTTGACATTATATAAAGGTTTGC-CA
1 CACAAGTTGACATTATAT-TAGGTTTGCTCA
36859513 CACAAGTTGAC-TTATATTAGGTT
1 CACAAGTTGACATTATATTAGGTT
36859536 ACCTATCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.10
29 6 0.12
30 30 0.62
31 7 0.15
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Consensus pattern (30 bp):
CACAAGTTGACATTATATTAGGTTTGCTCA
Found at i:36865359 original size:28 final size:28
Alignment explanation
Indices: 36865298--36865395 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
36865288 TCACAAATTG
** * *
36865298 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
36865327 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
36865355 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
36865383 GCACTAAGTGTGC
1 GCACTAAGTGTGC
36865396 GGGCTTATGG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:36867470 original size:43 final size:43
Alignment explanation
Indices: 36867371--36867505 Score: 116
Period size: 43 Copynumber: 3.1 Consensus size: 43
36867361 TTTGGGATGT
* * *
36867371 TGGCATCGACT-TATGATTTACGTGTAAGACCATGTCTGGGACA
1 TGGCATCGA-TATTTGATTTACGTATAAGACCATGTCTGGGAAA
* * *
36867414 TCGGTATTG-TATTTGATTT-CGTATAAGACCTTGTCTGGGATAA
1 T-GGCATCGATATTTGATTTACGTATAAGACCATGTCTGGGA-AA
* * * *
36867457 TGGCATCGATATTTGA-TTACATGTAAGACCACGTCTGGGACAT
1 TGGCATCGATATTTGATTTACGTATAAGACCATGTCTGGGA-AA
36867500 TGGCAT
1 TGGCAT
36867506 TGTACGAGCT
Statistics
Matches: 73, Mismatches: 14, Indels: 10
0.75 0.14 0.10
Matches are distributed among these distances:
42 27 0.37
43 41 0.56
44 5 0.07
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGGCATCGATATTTGATTTACGTATAAGACCATGTCTGGGAAA
Found at i:36872235 original size:260 final size:260
Alignment explanation
Indices: 36871774--36872295 Score: 1044
Period size: 260 Copynumber: 2.0 Consensus size: 260
36871764 TGTGATGTGA
36871774 GTCCGGTAATTCCTCGTTCTCTATTATAGCATCGAATACGGGTAAGGGATGTTACATTATTGGCT
1 GTCCGGTAATTCCTCGTTCTCTATTATAGCATCGAATACGGGTAAGGGATGTTACATTATTGGCT
36871839 TTAGGGGCTGATTTCTTGAAAGGGAAAGTTATCAATTTAAGTGCCATAATTTTATCTCTGGGTTG
66 TTAGGGGCTGATTTCTTGAAAGGGAAAGTTATCAATTTAAGTGCCATAATTTTATCTCTGGGTTG
36871904 TTAACTGGTACAATTTGTTGTTGGATGTACGATTCGAGAGTGCTCTATTGTGTGGTTGTTTGGAA
131 TTAACTGGTACAATTTGTTGTTGGATGTACGATTCGAGAGTGCTCTATTGTGTGGTTGTTTGGAA
36871969 ATAACATCAGGTGTGTGAAATCAACCAAGAAACTTGATTGAAACTCGATTAAATCATGAAACTGG
196 ATAACATCAGGTGTGTGAAATCAACCAAGAAACTTGATTGAAACTCGATTAAATCATGAAACTGG
36872034 GTCCGGTAATTCCTCGTTCTCTATTATAGCATCGAATACGGGTAAGGGATGTTACATTATTGGCT
1 GTCCGGTAATTCCTCGTTCTCTATTATAGCATCGAATACGGGTAAGGGATGTTACATTATTGGCT
36872099 TTAGGGGCTGATTTCTTGAAAGGGAAAGTTATCAATTTAAGTGCCATAATTTTATCTCTGGGTTG
66 TTAGGGGCTGATTTCTTGAAAGGGAAAGTTATCAATTTAAGTGCCATAATTTTATCTCTGGGTTG
36872164 TTAACTGGTACAATTTGTTGTTGGATGTACGATTCGAGAGTGCTCTATTGTGTGGTTGTTTGGAA
131 TTAACTGGTACAATTTGTTGTTGGATGTACGATTCGAGAGTGCTCTATTGTGTGGTTGTTTGGAA
36872229 ATAACATCAGGTGTGTGAAATCAACCAAGAAACTTGATTGAAACTCGATTAAATCATGAAACTGG
196 ATAACATCAGGTGTGTGAAATCAACCAAGAAACTTGATTGAAACTCGATTAAATCATGAAACTGG
36872294 GT
1 GT
36872296 TGTTTTTCAA
Statistics
Matches: 262, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
260 262 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (260 bp):
GTCCGGTAATTCCTCGTTCTCTATTATAGCATCGAATACGGGTAAGGGATGTTACATTATTGGCT
TTAGGGGCTGATTTCTTGAAAGGGAAAGTTATCAATTTAAGTGCCATAATTTTATCTCTGGGTTG
TTAACTGGTACAATTTGTTGTTGGATGTACGATTCGAGAGTGCTCTATTGTGTGGTTGTTTGGAA
ATAACATCAGGTGTGTGAAATCAACCAAGAAACTTGATTGAAACTCGATTAAATCATGAAACTGG
Found at i:36875926 original size:28 final size:28
Alignment explanation
Indices: 36875797--36875927 Score: 75
Period size: 28 Copynumber: 4.7 Consensus size: 28
36875787 CGATATTGAG
* * *
36875797 AGTCCTCCAAAGGTTGTCTTATGTGGAA
1 AGTCCACCAAAGATTATCTTATGTGGAA
* * * * * *
36875825 GGTCCACTAAGGCA-TAACTTTTCTGGAA
1 AGTCCACCAAAG-ATTATCTTATGTGGAA
* * * * *
36875853 AGTCCACTAAGGATTATCATATGCGGGA
1 AGTCCACCAAAGATTATCTTATGTGGAA
* ** * *
36875881 ACTCTGCCAAAAACTATCTTATGTGGAA
1 AGTCCACCAAAGATTATCTTATGTGGAA
36875909 AGTCCACCAAAGATTATCT
1 AGTCCACCAAAGATTATCT
36875928 CAAATGGAAT
Statistics
Matches: 70, Mismatches: 31, Indels: 4
0.67 0.30 0.04
Matches are distributed among these distances:
27 1 0.01
28 69 0.99
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (28 bp):
AGTCCACCAAAGATTATCTTATGTGGAA
Found at i:36881238 original size:52 final size:52
Alignment explanation
Indices: 36881179--36881282 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
36881169 AATAATGATA
36881179 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
1 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
* *
36881231 TGATAATAAATGTCCCGGTTGAAGTTAAAATGGGAAATTCTATGGATAAACC
1 TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
36881283 ATGACTTACA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (52 bp):
TGATAATAAATGTCCCGGTTGAAGTTAAAAAGGGAAATTCGATGGATAAACC
Found at i:36901873 original size:25 final size:25
Alignment explanation
Indices: 36901792--36901902 Score: 116
Period size: 25 Copynumber: 4.4 Consensus size: 25
36901782 CCACAACTCT
* *
36901792 TGAGAGCACACCGGTTTACAGCTCG
1 TGAGAGCATACCGATTTACAGCTCG
* *
36901817 TGAGAACATACTGATTTACAGCTCG
1 TGAGAGCATACCGATTTACAGCTCG
* *
36901842 TAAGAGCATACCGATTTACAGTTCG
1 TGAGAGCATACCGATTTACAGCTCG
* * * *
36901867 GGTGAGCATACCGATTCATAGCTCG
1 TGAGAGCATACCGATTTACAGCTCG
36901892 T-ATGAGCATAC
1 TGA-GAGCATAC
36901903 ATGTACAAGA
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
25 69 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
TGAGAGCATACCGATTTACAGCTCG
Found at i:36901877 original size:50 final size:50
Alignment explanation
Indices: 36901794--36901902 Score: 128
Period size: 50 Copynumber: 2.2 Consensus size: 50
36901784 ACAACTCTTG
* * * * *
36901794 AGAGCACACCGGTTTACAGCTCGTGAGAACATACTGATTTACAGCTCGTA
1 AGAGCATACCGATTTACAGCTCGGGAGAACATACCGATTCACAGCTCGTA
* * * *
36901844 AGAGCATACCGATTTACAGTTCGGGTGAGCATACCGATTCATAGCTCGTA
1 AGAGCATACCGATTTACAGCTCGGGAGAACATACCGATTCACAGCTCGTA
*
36901894 TGAGCATAC
1 AGAGCATAC
36901903 ATGTACAAGA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (50 bp):
AGAGCATACCGATTTACAGCTCGGGAGAACATACCGATTCACAGCTCGTA
Found at i:36907959 original size:14 final size:15
Alignment explanation
Indices: 36907933--36907965 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
36907923 CTTAATAAGT
36907933 AAATGGATTAAGTAA
1 AAATGGATTAAGTAA
36907948 AAATGG-TTAAGTAA
1 AAATGGATTAAGTAA
36907962 AAAT
1 AAAT
36907966 CGGGATTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.18, T:0.27
Consensus pattern (15 bp):
AAATGGATTAAGTAA
Found at i:36908267 original size:21 final size:21
Alignment explanation
Indices: 36908228--36908267 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
36908218 AGATTGAGAA
* * *
36908228 GGCTAAGTTAGCCACTGAAAT
1 GGCTAAGTAAACCAATGAAAT
36908249 GGCTAAGTAAACCAATGAA
1 GGCTAAGTAAACCAATGAA
36908268 TCTCTTAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (21 bp):
GGCTAAGTAAACCAATGAAAT
Found at i:36913336 original size:45 final size:45
Alignment explanation
Indices: 36913272--36913365 Score: 170
Period size: 45 Copynumber: 2.1 Consensus size: 45
36913262 CTCACTAAAA
* *
36913272 TTCAAATATATCTTAATATACACTTCTTTTGTTTACTCTATTTCT
1 TTCAAATATATCTTAATATACACTCCTTTTGCTTACTCTATTTCT
36913317 TTCAAATATATCTTAATATACACTCCTTTTGCTTACTCTATTTCT
1 TTCAAATATATCTTAATATACACTCCTTTTGCTTACTCTATTTCT
36913362 TTCA
1 TTCA
36913366 TATGAAAATA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.27, C:0.20, G:0.02, T:0.51
Consensus pattern (45 bp):
TTCAAATATATCTTAATATACACTCCTTTTGCTTACTCTATTTCT
Found at i:36914412 original size:54 final size:54
Alignment explanation
Indices: 36914231--36914427 Score: 245
Period size: 55 Copynumber: 3.6 Consensus size: 54
36914221 AACTTACCAT
* * * *
36914231 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
* * *
36914284 TGCCATGCCTTGGCATGGTATTACATGAGA-CCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAA
* * * * *
36914339 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTAATAGAGCTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
*
36914393 TGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTT
36914428 ATCTTACCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.27
54 41 0.34
55 44 0.36
56 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAA
Found at i:36914461 original size:47 final size:47
Alignment explanation
Indices: 36914406--36914527 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
36914396 CATGCCTTGG
* *
36914406 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGATCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGATCCAAA
*
36914453 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGATCCAAA
36914500 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
36914528 GTGCCAATGC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGATCCAAA
Found at i:36921299 original size:29 final size:29
Alignment explanation
Indices: 36921265--36921425 Score: 207
Period size: 29 Copynumber: 5.6 Consensus size: 29
36921255 TACTCGATTT
** * *
36921265 CGCACACTTAGTGCCATGCGATTT-AAGCC
1 CGCACACTTAGTGCCAT-ATATTTCCAGCA
* *** * *
36921294 CGCACACATAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
36921323 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
36921352 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36921381 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
36921410 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
36921426 ATCTCGTCAC
Statistics
Matches: 116, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 2 0.02
29 114 0.98
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:36924331 original size:55 final size:54
Alignment explanation
Indices: 36924218--36924408 Score: 217
Period size: 55 Copynumber: 3.5 Consensus size: 54
36924208 AACTTACCAT
* * * * *
36924218 TGCCATGTCTTGACATGGTCTTACGTGGT-ATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGA-CCTTGCCTTATAGAACTCATCAA
*
36924271 TGCCATGCCTTGGCATGGTATTACATGA-GACCTTTGCCTTATAGTAACTCATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACC-TTGCCTTATAG-AACTCATCAA
** * ** *
36924326 TGCCATGTATTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGATGACCTTGCCTTATAGAACTCATCAA
*
36924380 TGCTATGCCTTGGCATGGTCTTACATGAT
1 TGCCATGCCTTGGCATGGTCTTACATGAT
36924409 ATCCTTATCT
Statistics
Matches: 116, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 33 0.28
54 35 0.30
55 44 0.38
56 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (54 bp):
TGCCATGCCTTGGCATGGTCTTACATGATGACCTTGCCTTATAGAACTCATCAA
Found at i:36924512 original size:47 final size:47
Alignment explanation
Indices: 36924393--36924514 Score: 199
Period size: 47 Copynumber: 2.6 Consensus size: 47
36924383 TATGCCTTGG
* * *
36924393 CATGGTCTTACATGATATCCTTATCTTACCAAATGCTATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
36924440 CATGGTCTTACATGGTATCCTTGTCTTTCCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
36924487 CATGGTCTTACATGGTATCCCTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
36924515 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:36924581 original size:47 final size:47
Alignment explanation
Indices: 36924486--36924605 Score: 154
Period size: 47 Copynumber: 2.5 Consensus size: 47
36924476 CATGTTCCAA
* * *
36924486 ACATGGTCTTACATGGTATCCCTGT-CTTAGTGCCAATGCCATATCTTG
1 ACATGGTCTTACATGGTAT-CCT-TAATCAATGCCAATGCCATATCTTG
* *
36924534 ATATGGTCTTACATGG-AGTCCTTAATCAATGCCGATGCCATATCTTG
1 ACATGGTCTTACATGGTA-TCCTTAATCAATGCCAATGCCATATCTTG
36924581 ACATGGTCTTACATGGTATCCTTAA
1 ACATGGTCTTACATGGTATCCTTAA
36924606 CAGTCAATTA
Statistics
Matches: 63, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
46 1 0.02
47 45 0.71
48 17 0.27
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (47 bp):
ACATGGTCTTACATGGTATCCTTAATCAATGCCAATGCCATATCTTG
Found at i:36929456 original size:16 final size:15
Alignment explanation
Indices: 36929430--36929461 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
36929420 GCTAGATCGG
36929430 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
36929445 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
36929461 C
1 C
36929462 GGTATTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:36929741 original size:28 final size:28
Alignment explanation
Indices: 36929709--36929773 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
36929699 ATTTACTAGA
*
36929709 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
36929737 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
36929765 ATACCCCTA
1 ATACCCCTA
36929774 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:36929910 original size:28 final size:28
Alignment explanation
Indices: 36929879--36929968 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
36929869 AGGAAGCGTC
36929879 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGTT
* *
36929907 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGTT
* *
36929934 CTAGTGGC-ATTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAATTATCTGT-T
36929963 CTGGTG
1 CTGGTG
36929969 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 22 0.42
28 24 0.46
29 6 0.12
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTATGCCACAAATTATCTGTT
Found at i:36929940 original size:27 final size:27
Alignment explanation
Indices: 36929879--36929993 Score: 108
Period size: 27 Copynumber: 4.1 Consensus size: 27
36929869 AGGAAGCGTC
*
36929879 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCTCTGCCACAAATT-TCTGTT
*
36929907 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACAAATTTCTGTT
* *
36929934 CTAGTGGCAT-TGCCACAAAATATCTGTAT
1 CTGGTGGC-TCTGCCAC-AAATTTCTGT-T
* * *
36929963 CTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTCTGCCACAAATTTCTGT-T
36929990 CTGG
1 CTGG
36929994 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
27 32 0.44
28 29 0.40
29 12 0.16
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATTTCTGTT
Found at i:36935072 original size:40 final size:40
Alignment explanation
Indices: 36934991--36935196 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 40
36934981 CGGAATTTAA
* * * * **
36934991 CCGGATAT-A-AACTCGCTCAAATGCCTTCGGGACGAAGC
1 CCGGATATAATAACTCACACAATTGCCTTCGGGTCTTAGC
* * * *
36935029 CCGGTTATAGTGACTCACACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATAACTCACACAATTGCCTTCGGGTCTTAGC
* ** ** *
36935069 CCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCACACAATTGCCTTCGGGTCTTAGC
* *
36935109 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATAACTCACAC-AATTGCCTTCGGGTCTTAGC
* *
36935149 CCGGATATAATTACT-AGCACAATTGCCTTCGGGACTTAGC
1 CCGGATATAATAACTCA-CACAATTGCCTTCGGGTCTTAGC
36935189 CCGGATAT
1 CCGGATAT
36935197 CATTCCAATG
Statistics
Matches: 136, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
38 7 0.05
39 2 0.01
40 125 0.92
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATAACTCACACAATTGCCTTCGGGTCTTAGC
Found at i:36935110 original size:80 final size:80
Alignment explanation
Indices: 36934987--36935196 Score: 230
Period size: 80 Copynumber: 2.7 Consensus size: 80
36934977 CCTTCGGAAT
* * ** * ***
36934987 TTAA-CCGGATAT-A-AACTCGCTCAAATGCCTTCGGGACGAAGCCCGGTTATAGTGACTCACAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCACAC
36935049 -AATTGCCTTCGGGTC
66 GAA-TGCCTTCGGGTC
* ** * * *
36935064 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCGCAC
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCACAC
36935129 GAATGCCTTCGGGTC
66 GAATGCCTTCGGGTC
* * *
36935144 TTAGCCCGGATATAATTACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
36935197 CATTCCAATG
Statistics
Matches: 109, Mismatches: 20, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
77 4 0.04
78 7 0.06
80 96 0.88
81 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
TTAACCCGGATATAATAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAACAACTCACAC
GAATGCCTTCGGGTC
Found at i:36940244 original size:8 final size:8
Alignment explanation
Indices: 36940231--36940278 Score: 69
Period size: 8 Copynumber: 6.0 Consensus size: 8
36940221 CTAGATAGGC
36940231 AAAAGCCG
1 AAAAGCCG
36940239 AAAAGCCG
1 AAAAGCCG
*
36940247 AAATGCCG
1 AAAAGCCG
*
36940255 AAAAGCTG
1 AAAAGCCG
*
36940263 AAATGCCG
1 AAAAGCCG
36940271 AAAAGCCG
1 AAAAGCCG
36940279 GTATTTTGGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.46, C:0.23, G:0.25, T:0.06
Consensus pattern (8 bp):
AAAAGCCG
Found at i:36940256 original size:16 final size:16
Alignment explanation
Indices: 36940235--36940278 Score: 79
Period size: 16 Copynumber: 2.8 Consensus size: 16
36940225 ATAGGCAAAA
36940235 GCCGAAAAGCCGAAAT
1 GCCGAAAAGCCGAAAT
*
36940251 GCCGAAAAGCTGAAAT
1 GCCGAAAAGCCGAAAT
36940267 GCCGAAAAGCCG
1 GCCGAAAAGCCG
36940279 GTATTTTGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.41, C:0.25, G:0.27, T:0.07
Consensus pattern (16 bp):
GCCGAAAAGCCGAAAT
Found at i:36940557 original size:28 final size:28
Alignment explanation
Indices: 36940525--36940589 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 28
36940515 ATTTACTAGA
*
36940525 ATACCCCTATGTATGCAAAATTACCAT-T
1 ATACCCCTATGTATGCAAAATGACC-TCT
36940553 ATACCCCTATGTATGCAAAATGACCTCT
1 ATACCCCTATGTATGCAAAATGACCTCT
36940581 ATACCCCTA
1 ATACCCCTA
36940590 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.29, G:0.08, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCTCT
Found at i:36940736 original size:28 final size:29
Alignment explanation
Indices: 36940695--36940757 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
36940685 AGGAAGCGTC
*
36940695 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
36940723 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
36940752 CTGGTG
1 CTGGTG
36940758 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:36940768 original size:29 final size:28
Alignment explanation
Indices: 36940705--36940768 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
36940695 CTGGTGGCTA
* *
36940705 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
36940733 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36940762 TGTCACA
1 TGCCACA
36940769 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36943813 original size:48 final size:47
Alignment explanation
Indices: 36943660--36943976 Score: 217
Period size: 48 Copynumber: 6.7 Consensus size: 47
36943650 ATGGATGTGT
* * *
36943660 GCTAATGTAAGACATGTCTGGGACAT-GCATCGGCCACA-TTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAGATATGA-A
* * * *
36943706 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGACA--AA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGC-CTCAGATATGAA
*
36943753 GCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGAGATATGCAA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTC-AGATATG-AA
* * * *
36943801 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGG-CT-TGACATG-T
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAGATATGAA
* *
36943845 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-C-GATAGATGAGA
1 GCT-AGTGTAAGACATGTCTGGGACATGGCATCGGC-CTCAGAT--ATGA-A
* * * * * * *
36943894 GCCAATGTAAGACCTGTCTGGGACATGGCATC-GACTTAGATGTGTGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAGATATG-AA
* * * *
36943941 GCAAGTGTAAGACCATGTTTAGAACATGGCATCGGC
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
36943977 ATTGTACCCT
Statistics
Matches: 214, Mismatches: 34, Indels: 43
0.74 0.12 0.15
Matches are distributed among these distances:
43 1 0.00
44 32 0.15
45 13 0.06
46 30 0.14
47 43 0.20
48 54 0.25
49 40 0.19
50 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCAGATATGAA
Found at i:36943916 original size:93 final size:93
Alignment explanation
Indices: 36943660--36943926 Score: 316
Period size: 93 Copynumber: 2.9 Consensus size: 93
36943650 ATGGATGTGT
* *
36943660 GCTAATGTAAGACATGTCTGGGACATGCATCGGCCAC-AT-TATGAGAGCCAGTGTAAGACCATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACGATATATGAGAGCCAGTGTAAGACC-TG
36943723 TCTGGGACATGGCATCGGCATTAAGACAAA
65 TCTGGGACATGGCATCGGCATT-AGACAAA
* * *
36943753 GCTAGTGTAAGACATGTCTGGGACATGCATC-AGCCTCGAGATATGCA-AGCTAGTGTAAGACCT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CCACGATATATG-AGAGCCAGTGTAAGACCT
*
36943816 GTCTGGGACATGGCATCGGC-TT-GAC-AT
64 GTCTGGGACATGGCATCGGCATTAGACAAA
* * * *
36943843 GTGTCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CACCGATAGATGAGAGCCAATGTAAGAC
1 G-CT-AGTGTAAGACATGTCTGGGACAT-GCATCGACCA-CGATATATGAGAGCCAGTGTAAGAC
36943907 CTGTCTGGGACATGGCATCG
62 CTGTCTGGGACATGGCATCG
36943927 ACTTAGATGT
Statistics
Matches: 151, Mismatches: 13, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
90 2 0.01
91 4 0.03
92 24 0.16
93 79 0.52
94 23 0.15
95 18 0.12
96 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACGATATATGAGAGCCAGTGTAAGACCTGT
CTGGGACATGGCATCGGCATTAGACAAA
Found at i:36943922 original size:49 final size:47
Alignment explanation
Indices: 36943665--36943928 Score: 204
Period size: 49 Copynumber: 5.6 Consensus size: 47
36943655 TGTGTGCTAA
* * **
36943665 TGTAAGACATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACC-CGAAGATGAGAGCCAG
* *** * * *
36943711 TGTAAGACCATGTCTGGGACATGGCATCGGCATTAAGA-CAAAGCTAG
1 TGTAAGACC-TGTCTGGGACATGGCATCGACCCGAAGATGAGAGCCAG
* * *
36943758 TGTAAGACATGTCTGGGACAT-GCATC-AGCCTCGAGATATGCA-AGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCGA-CC-CGA-AGATG-AGAGCCAG
* ** * * *
36943806 TGTAAGACCTGTCTGGGACATGGCATCGGCTTG-ACAT--GTGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACCCGAAGATGAGAGCCAG
*
36943850 TGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CCGA-AGATGAGAGCCAG
36943899 TGTAAGACCTGTCTGGGACATGGCATCGAC
1 TGTAAGACCTGTCTGGGACATGGCATCGAC
36943929 TTAGATGTGT
Statistics
Matches: 172, Mismatches: 30, Indels: 29
0.74 0.13 0.13
Matches are distributed among these distances:
44 32 0.19
45 7 0.04
46 24 0.14
47 31 0.18
48 37 0.22
49 41 0.24
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (47 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCCGAAGATGAGAGCCAG
Found at i:36951975 original size:22 final size:20
Alignment explanation
Indices: 36951943--36951983 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
36951933 CAACGAACAA
36951943 AAAAAATAACAAAAAAATTG
1 AAAAAATAACAAAAAAATTG
*
36951963 AAAAAATCGAACACAAAAATT
1 AAAAAAT--AACAAAAAAATT
36951984 TTACGTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.71, C:0.10, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAAATAACAAAAAAATTG
Found at i:36955522 original size:21 final size:21
Alignment explanation
Indices: 36955498--36955552 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
36955488 GTCAATATTT
36955498 ACTTTAATTAAGTTATTTACC
1 ACTTTAATTAAGTTATTTACC
*
36955519 ACTTTAATTGAGTTATTTACC
1 ACTTTAATTAAGTTATTTACC
*
36955540 ACTCTTAACTAAG
1 ACT-TTAATTAAG
36955553 AATACCCTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (21 bp):
ACTTTAATTAAGTTATTTACC
Found at i:36955754 original size:18 final size:20
Alignment explanation
Indices: 36955726--36955764 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
36955716 AAATTTTAGC
36955726 TTCTCCCCAAAAGT-TTTTT
1 TTCTCCCCAAAAGTGTTTTT
*
36955745 TTCT-CCCAAAGGTGTTTTT
1 TTCTCCCCAAAAGTGTTTTT
36955764 T
1 T
36955765 ACAAGCAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.18, C:0.23, G:0.10, T:0.49
Consensus pattern (20 bp):
TTCTCCCCAAAAGTGTTTTT
Found at i:36956447 original size:21 final size:21
Alignment explanation
Indices: 36956423--36956480 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 21
36956413 GACGCAGAGT
*
36956423 CAATGTCGCGACATTCAAGTC
1 CAATGTCGAGACATTCAAGTC
* * *
36956444 CAAT-TTGAAACATTCAATTC
1 CAATGTCGAGACATTCAAGTC
36956464 CAATGTC-ATGACATTCA
1 CAATGTCGA-GACATTCA
36956481 GTTACGATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.29
Consensus pattern (21 bp):
CAATGTCGAGACATTCAAGTC
Found at i:36958075 original size:20 final size:20
Alignment explanation
Indices: 36958050--36958087 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36958040 GTTTATTTGC
*
36958050 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
36958070 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
36958088 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:36959745 original size:28 final size:28
Alignment explanation
Indices: 36959713--36959781 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
36959703 GCGTAGATCA
36959713 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
36959741 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
36959769 CGATA-TACCCCTA
1 CGAAATTACCCCTA
36959782 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:36970758 original size:44 final size:42
Alignment explanation
Indices: 36970693--36970774 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
36970683 CAATACTGAG
* *
36970693 ATAGCTTCGGTTTAATGTGATGGAACTAAGTGTGCGAAATCGTT
1 ATAGCTTCGGTCTAATCTGAT-GAACTAAGTGTGC-AAATCGTT
*
36970737 ATAGCTTCGG-CTAATACTGATGCACTAAGTGTGCAAAT
1 ATAGCTTCGGTCTAAT-CTGATGAACTAAGTGTGCAAAT
36970775 TCTTAGAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
42 4 0.12
43 16 0.47
44 14 0.41
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (42 bp):
ATAGCTTCGGTCTAATCTGATGAACTAAGTGTGCAAATCGTT
Found at i:36974126 original size:21 final size:20
Alignment explanation
Indices: 36974100--36974146 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 20
36974090 TATAGATATG
36974100 ATTTTTAATTTTTCTTTA-TTT
1 ATTTTT-ATTTTT-TTTACTTT
36974121 ATTTTTATTTTTTTTACTTTT
1 ATTTTTATTTTTTTTAC-TTT
36974142 ATTTT
1 ATTTT
36974147 CTTTTTAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.17
20 6 0.25
21 14 0.58
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (20 bp):
ATTTTTATTTTTTTTACTTT
Found at i:36974136 original size:15 final size:16
Alignment explanation
Indices: 36974118--36974151 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
36974108 TTTTTCTTTA
*
36974118 TTTATTTTTATTTT-T
1 TTTACTTTTATTTTCT
36974133 TTTACTTTTATTTTCT
1 TTTACTTTTATTTTCT
36974149 TTT
1 TTT
36974152 TAGATCGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.12, C:0.06, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTACTTTTATTTTCT
Found at i:36976524 original size:17 final size:16
Alignment explanation
Indices: 36976458--36976533 Score: 62
Period size: 17 Copynumber: 4.5 Consensus size: 16
36976448 GCTAATTGGT
* *
36976458 TTATTGATTTATTTTCT
1 TTATTTATTTATTTT-A
*
36976475 TTATTTATTTCTTTTA
1 TTATTTATTTATTTTA
*
36976491 GTTATTTATTTCTTTTTA
1 -TTATTTATTT-ATTTTA
*
36976509 TCTATTAATTTATTTTA
1 T-TATTTATTTATTTTA
*
36976526 TGATTTAT
1 TTATTTAT
36976534 CATAATATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
16 5 0.10
17 30 0.62
18 13 0.27
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.70
Consensus pattern (16 bp):
TTATTTATTTATTTTA
Found at i:36977250 original size:40 final size:40
Alignment explanation
Indices: 36977190--36977268 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
36977180 TTTTCAAAGC
*
36977190 CTAAAATAGGCATTGGAGAAGAAGTAATATTCAGTCAATA
1 CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAATA
36977230 CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAAT
1 CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAAT
36977269 CTTCCTTGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.44, C:0.11, G:0.19, T:0.25
Consensus pattern (40 bp):
CTAAAATAGGCATTGCAGAAGAAGTAATATTCAGTCAATA
Found at i:36979952 original size:44 final size:43
Alignment explanation
Indices: 36979903--36980037 Score: 148
Period size: 43 Copynumber: 3.1 Consensus size: 43
36979893 CGGGCCTCGA
*
36979903 CCTAGCAAGCTTTAA-GCTGGTGA-ATAATATTATCGGGCTTCAGG
1 CCTAGCAAGCTATAATGCTGGTGAGAT-A-A-TATCGGGCTTCAGG
* *
36979947 CCTAGCAGGCTATAATGCTGGTGAGATAATATCGGGCTTCGGG
1 CCTAGCAAGCTATAATGCTGGTGAGATAATATCGGGCTTCAGG
* * * * * *
36979990 CCTAGCAGGCTATATTGCCGGTGAAATGATATCGGGCTTCAAG
1 CCTAGCAAGCTATAATGCTGGTGAGATAATATCGGGCTTCAGG
36980033 CCTAG
1 CCTAG
36980038 TAGGCGAAAT
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
43 55 0.69
44 14 0.17
45 9 0.11
46 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (43 bp):
CCTAGCAAGCTATAATGCTGGTGAGATAATATCGGGCTTCAGG
Found at i:36979980 original size:43 final size:42
Alignment explanation
Indices: 36979928--36980057 Score: 163
Period size: 43 Copynumber: 3.1 Consensus size: 42
36979918 GCTGGTGAAT
* *
36979928 AATATTATCGGGCTTCAGGCCTAGCAGGCTATAATGCTGGTG
1 AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTG
* *
36979970 AGATAATATCGGGCTTCGGGCCTAGCAGGCTATATTGCCGGTG
1 A-ATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTG
* * * *
36980013 AAATGATATCGGGCTTCAAGCCTAGTAGGCGA-AATGCCGGTG
1 -AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTG
36980055 AAT
1 AAT
36980058 GAGTTCAGAC
Statistics
Matches: 76, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
41 3 0.04
42 10 0.13
43 62 0.82
44 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (42 bp):
AATAATATCGGGCTTCAGGCCTAGCAGGCTATAATGCCGGTG
Found at i:36996748 original size:14 final size:14
Alignment explanation
Indices: 36996729--36996756 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36996719 TTTGGAAGTG
36996729 TATATATATACATA
1 TATATATATACATA
36996743 TATATATATACATA
1 TATATATATACATA
36996757 AGTATGCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATACATA
Found at i:36997291 original size:27 final size:28
Alignment explanation
Indices: 36997231--36997300 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
36997221 AAATTGGTAC
*
36997231 AGCACTAAGTGTGCGAGTTTGGTTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
36997259 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
36997286 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
36997301 GAATCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:36999193 original size:116 final size:116
Alignment explanation
Indices: 36998989--36999218 Score: 406
Period size: 116 Copynumber: 2.0 Consensus size: 116
36998979 ATAATTGTAG
36998989 TGATACCTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
1 TGATACCTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
*
36999054 ATTCTGTTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCTTA
66 ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCTTA
* * **
36999105 TGATACCTTTTTTATGCATTGATACTCTAATATAAAGTGTTGATACTTTAGTCTATTATCTTGAG
1 TGATACCTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
*
36999170 ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTCAGTATCGATACCCT
66 ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCT
36999219 AGTAAGGGTA
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
116 108 1.00
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.43
Consensus pattern (116 bp):
TGATACCTTTTTTATGCATTGATACTCTAATATAAAATATTGATACTTTAGTCTAGAATCTTGAG
ATTCTATTTCTTAAAAATTTTCTTGAAAAGTGCTAAGTATCGATACCCTTA
Found at i:37004482 original size:26 final size:26
Alignment explanation
Indices: 37004453--37004502 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37004443 TAATAAAATA
37004453 AAAAT-TATTAAAAACATAAAATTTAT
1 AAAATCTATTAAAAA-ATAAAATTTAT
* *
37004479 AAAATCTATTTAATAATAAAATTT
1 AAAATCTATTAAAAAATAAAATTT
37004503 CTAATAACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 14 0.67
27 7 0.33
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAATCTATTAAAAAATAAAATTTAT
Found at i:37016677 original size:28 final size:29
Alignment explanation
Indices: 37016615--37016678 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
37016605 GTGACGAGAT
** *
37016615 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
*
37016644 TGGCACTAAGTGTGCAAGCT-GAAAAATA
1 CGGCACTAAGTGTGCAAGCTGGAAAAATA
37016672 CGGCACT
1 CGGCACT
37016679 GGGTGTGCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 13 0.43
29 17 0.57
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCAAGCTGGAAAAATA
Found at i:37024483 original size:29 final size:29
Alignment explanation
Indices: 37024450--37024527 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
37024440 GTGACGAGAT
* *
37024450 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
*
37024479 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGAGCTGGAAAAATA
* **
37024508 CGGCACTGGGTGTGCGAGCT
1 TGGCACTAAGTGTGCGAGCT
37024528 CGGAGGGTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.27, C:0.17, G:0.33, T:0.23
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:37041078 original size:23 final size:22
Alignment explanation
Indices: 37041000--37041112 Score: 122
Period size: 22 Copynumber: 5.0 Consensus size: 22
37040990 TTACCGTTTT
* * *
37041000 AGCTCGTATGAGCTTTCTGTTC
1 AGCTCGAAAGAGCTTACTGTTC
*
37041022 AGCTCGAAAGAGCTTGCTGTTC
1 AGCTCGAAAGAGCTTACTGTTC
37041044 AGCTCGAAAGAGCTTACTGTATC
1 AGCTCGAAAGAGCTTACTGT-TC
*
37041067 AGCTC-AATAGAGCTTACCGTTTC
1 AGCTCGAA-AGAGCTTACTG-TTC
*
37041090 AGCTC-AATAGAGATTACTGTTC
1 AGCTCGAA-AGAGCTTACTGTTC
37041112 A
1 A
37041113 TTAGCTCAGG
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
22 44 0.54
23 36 0.44
24 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
AGCTCGAAAGAGCTTACTGTTC
Found at i:37045863 original size:29 final size:28
Alignment explanation
Indices: 37045806--37045897 Score: 123
Period size: 29 Copynumber: 3.2 Consensus size: 28
37045796 TACCTATATT
* *
37045806 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATT-ATA
*
37045834 TGGCCCATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACAT-TATA
37045863 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACA-TTATA
37045892 TGGCCC
1 TGGCCC
37045898 GTTATGCCTA
Statistics
Matches: 57, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 14 0.25
29 41 0.72
30 2 0.04
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAAATCACATTATA
Found at i:37046163 original size:15 final size:15
Alignment explanation
Indices: 37046143--37046171 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37046133 TCGACTTTTT
37046143 AGCATTTCGGCTTTC
1 AGCATTTCGGCTTTC
37046158 AGCATTTCGGCTTT
1 AGCATTTCGGCTTT
37046172 TGCCGATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.41
Consensus pattern (15 bp):
AGCATTTCGGCTTTC
Found at i:37046617 original size:7 final size:8
Alignment explanation
Indices: 37046599--37046625 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
37046589 CCCTTGGGAG
37046599 TTTTGGCT
1 TTTTGGCT
37046607 TTTTGGCT
1 TTTTGGCT
37046615 TTTTGGCT
1 TTTTGGCT
37046623 TTT
1 TTT
37046626 CAAACCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.22, T:0.67
Consensus pattern (8 bp):
TTTTGGCT
Found at i:37050018 original size:27 final size:27
Alignment explanation
Indices: 37049985--37050432 Score: 526
Period size: 27 Copynumber: 16.6 Consensus size: 27
37049975 AAAGTACTCC
37049985 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
37050012 C-AGTTTATAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* ** * *
37050039 TGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
37050066 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
37050093 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
37050120 TGATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
37050147 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
37050174 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
37050201 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
37050228 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
* *
37050255 CGATTTATAGAATTACCATTTTACCC-
1 CGATTTACAGAATTACCGTTTTACCCT
* * * *
37050281 CTAATTTACATAATTATCGTTTTACCCC
1 C-GATTTACAGAATTACCGTTTTACCCT
* * *
37050309 CGATTTACATAATTATCGTCTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
37050336 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
37050363 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
37050390 TGATTTACAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
37050417 CGATTTACAAAATTAC
1 CGATTTACAGAATTAC
37050433 TAAAATACCC
Statistics
Matches: 364, Mismatches: 49, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.01
27 356 0.98
28 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:37051704 original size:25 final size:25
Alignment explanation
Indices: 37051675--37051722 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37051665 TTATAATATG
* * *
37051675 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
37051700 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
37051723 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:37051794 original size:20 final size:20
Alignment explanation
Indices: 37051766--37051824 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
37051756 TAAATATGGT
*
37051766 ATGTGTGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
37051786 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
37051806 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37051825 GGTAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:37051905 original size:23 final size:24
Alignment explanation
Indices: 37051875--37051969 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
37051865 GAGGAAGTGA
37051875 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
37051898 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
37051922 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
37051946 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
37051970 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:37051943 original size:47 final size:49
Alignment explanation
Indices: 37051876--37051969 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
37051866 AGGAAGTGAA
*
37051876 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
37051923 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
37051970 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:37052212 original size:38 final size:38
Alignment explanation
Indices: 37052161--37052255 Score: 154
Period size: 38 Copynumber: 2.5 Consensus size: 38
37052151 CATTTACAGT
*
37052161 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
*
37052199 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
*
37052237 AAAGGGCTACGGCCCAGTA
1 AAA-GGCTTCGGCCCAGTA
37052256 CATGATTGAG
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
38 39 0.74
39 14 0.26
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACACGA
Found at i:37064087 original size:9 final size:9
Alignment explanation
Indices: 37064071--37064104 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
37064061 TTTAATTGGA
37064071 AATTAATTT
1 AATTAATTT
*
37064080 AGTTAATTT
1 AATTAATTT
*
37064089 AATTAATTA
1 AATTAATTT
37064098 AATTAAT
1 AATTAAT
37064105 AGAATAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (9 bp):
AATTAATTT
Found at i:37067750 original size:22 final size:22
Alignment explanation
Indices: 37067725--37067796 Score: 83
Period size: 22 Copynumber: 3.3 Consensus size: 22
37067715 CATTTCATAG
*
37067725 CATATCATGTATCATGTCAGAA
1 CATATCATATATCATGTCAGAA
* *
37067747 CATATCATATCA-CATGTCATAG
1 CATATCATAT-ATCATGTCAGAA
* *
37067769 CATATCATATTTCATATCAGAA
1 CATATCATATATCATGTCAGAA
37067791 CATATC
1 CATATC
37067797 TTATCACATA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
22 40 0.98
23 1 0.02
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (22 bp):
CATATCATATATCATGTCAGAA
Found at i:37067767 original size:44 final size:44
Alignment explanation
Indices: 37067714--37067819 Score: 158
Period size: 44 Copynumber: 2.4 Consensus size: 44
37067704 ATGCTAAGTA
* * *
37067714 ACATTTCATAGCATATCATGTATCATGTCAGAACATATCATATC
1 ACATATCATAGCATATCATATATCATATCAGAACATATCATATC
* * *
37067758 ACATGTCATAGCATATCATATTTCATATCAGAACATATCTTATC
1 ACATATCATAGCATATCATATATCATATCAGAACATATCATATC
37067802 ACATATCATAGCATATCA
1 ACATATCATAGCATATCA
37067820 AATCCTACTC
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 56 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.34
Consensus pattern (44 bp):
ACATATCATAGCATATCATATATCATATCAGAACATATCATATC
Found at i:37067806 original size:22 final size:22
Alignment explanation
Indices: 37067741--37067819 Score: 86
Period size: 22 Copynumber: 3.6 Consensus size: 22
37067731 ATGTATCATG
*
37067741 TCAGAACATATCATATCACATG
1 TCAGAACATATCATATCACATA
* * **
37067763 TCATAGCATATCATATTTCATA
1 TCAGAACATATCATATCACATA
*
37067785 TCAGAACATATCTTATCACATA
1 TCAGAACATATCATATCACATA
* *
37067807 TCATAGCATATCA
1 TCAGAACATATCA
37067820 AATCCTACTC
Statistics
Matches: 44, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (22 bp):
TCAGAACATATCATATCACATA
Found at i:37069549 original size:93 final size:93
Alignment explanation
Indices: 37069437--37069608 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37069427 CGCCCATAAG
* *
37069437 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37069502 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
37069530 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
37069595 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
37069609 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:37069605 original size:46 final size:46
Alignment explanation
Indices: 37069430--37069605 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
37069420 TGTAACCCGC
* * *
37069430 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
37069476 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
37069526 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
37069569 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37069606 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:37073977 original size:2 final size:2
Alignment explanation
Indices: 37073970--37073998 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
37073960 TTCAAGTGAA
37073970 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37073999 TTATGTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37081196 original size:45 final size:45
Alignment explanation
Indices: 37081143--37081233 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
37081133 TGAGCAACAA
37081143 GATAGTGCGCTCGCTTCTTGGCTTCTGTTCTCTATCAATCAGACT
1 GATAGTGCGCTCGCTTCTTGGCTTCTGTTCTCTATCAATCAGACT
37081188 GATAGTGCGCTCGCTTCTTGGCTTCTGTTCTCTATCAATCAGACT
1 GATAGTGCGCTCGCTTCTTGGCTTCTGTTCTCTATCAATCAGACT
37081233 G
1 G
37081234 TGCTTCCTCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.15, C:0.26, G:0.21, T:0.37
Consensus pattern (45 bp):
GATAGTGCGCTCGCTTCTTGGCTTCTGTTCTCTATCAATCAGACT
Found at i:37089028 original size:14 final size:14
Alignment explanation
Indices: 37088971--37089030 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
37088961 TTGTGTTCCT
*
37088971 TGGACTTTTATGTA
1 TGGACTTGTATGTA
*
37088985 TGTACTTGTATGTA
1 TGGACTTGTATGTA
* * * *
37088999 TGAAATAAG-ATTTA
1 TGGACT-TGTATGTA
37089013 TGGACTTGTATGTA
1 TGGACTTGTATGTA
37089027 TGGA
1 TGGA
37089031 TAACATGAAA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
13 1 0.03
14 32 0.94
15 1 0.03
ACGTcount: A:0.28, C:0.05, G:0.23, T:0.43
Consensus pattern (14 bp):
TGGACTTGTATGTA
Found at i:37089351 original size:53 final size:53
Alignment explanation
Indices: 37089289--37089447 Score: 192
Period size: 53 Copynumber: 3.0 Consensus size: 53
37089279 TGGCACTAAG
* * *
37089289 AGACCATATCGTGTAAGACTGTAACTAGTGGGTTATGGCCTCATTTAGAAAGA
1 AGACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATCATATAGAAAGA
* ** * * *
37089342 AGACCATATCGTGTAAGACCGTAACTAGTGGCTTATGATATTATATGGAAATA
1 AGACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATCATATAGAAAGA
* * * * *
37089395 AAACCATATTGTTTAAGACCATAACTGGTGGGTTATGGCATCATATAGAAAGA
1 AGACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATCATATAGAAAGA
37089448 TTCAAGGAAG
Statistics
Matches: 86, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
53 86 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (53 bp):
AGACCATATCGTGTAAGACCGTAACTAGTGGGTTATGGCATCATATAGAAAGA
Found at i:37093544 original size:12 final size:12
Alignment explanation
Indices: 37093527--37093551 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37093517 TTAAAAATCC
37093527 TAAGTTTAGAGT
1 TAAGTTTAGAGT
37093539 TAAGTTTAGAGT
1 TAAGTTTAGAGT
37093551 T
1 T
37093552 TTATCAGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (12 bp):
TAAGTTTAGAGT
Found at i:37097551 original size:25 final size:25
Alignment explanation
Indices: 37097523--37097573 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
37097513 TAAAAGATAA
37097523 AACCAGAAATATGAATTTTCATGGG
1 AACCAGAAATATGAATTTTCATGGG
37097548 AACCAGAAATATGAATTTTCATGGG
1 AACCAGAAATATGAATTTTCATGGG
37097573 A
1 A
37097574 TAATATTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (25 bp):
AACCAGAAATATGAATTTTCATGGG
Found at i:37104427 original size:46 final size:44
Alignment explanation
Indices: 37104323--37104430 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
37104313 TGTCTTTGAC
** * * *
37104323 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
37104367 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
37104413 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
37104431 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:37126634 original size:21 final size:21
Alignment explanation
Indices: 37126601--37126652 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
37126591 AATATAGGTC
*
37126601 CAAA-CAACTACAAAGCATAAT
1 CAAACCAAC-ACAAAGCATAAA
37126622 CAAACCAACACAAAGCATAAA
1 CAAACCAACACAAAGCATAAA
*
37126643 CAAACGAACA
1 CAAACCAACA
37126653 ACTTGAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 24 0.86
22 4 0.14
ACGTcount: A:0.60, C:0.27, G:0.06, T:0.08
Consensus pattern (21 bp):
CAAACCAACACAAAGCATAAA
Found at i:37129294 original size:19 final size:19
Alignment explanation
Indices: 37129270--37129308 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37129260 CAATTAAGGG
*
37129270 TAATTAATGACTTAATTGA
1 TAATTAAGGACTTAATTGA
* *
37129289 TAATTAGGGATTTAATTGA
1 TAATTAAGGACTTAATTGA
37129308 T
1 T
37129309 TAGAGCCTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (19 bp):
TAATTAAGGACTTAATTGA
Found at i:37131438 original size:46 final size:45
Alignment explanation
Indices: 37131371--37131491 Score: 163
Period size: 46 Copynumber: 2.6 Consensus size: 45
37131361 TATGTGTGCT
* *
37131371 AGTGTAAGACATGTCTAGGACATGCATCAGACA-CAGCATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GACATCAG-ACGAGAGCC
* *
37131417 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACA-TCAGACGAGAGCC
*
37131463 AGTGTAAGACATGTTTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
37131492 GCCTCGCGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
45 4 0.06
46 62 0.91
47 2 0.03
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCAGACGAGAGCC
Found at i:37132902 original size:20 final size:21
Alignment explanation
Indices: 37132863--37132902 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37132853 GTCATAATAG
37132863 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCGTGTTGCCCTT
37132884 CCACACGGGCGTG-TGCCCT
1 CCACACGGGCGTGTTGCCCT
37132903 GTTTCAAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.40, G:0.30, T:0.20
Consensus pattern (21 bp):
CCACACGGGCGTGTTGCCCTT
Found at i:37135609 original size:18 final size:18
Alignment explanation
Indices: 37135588--37135622 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37135578 AAGTGAGTAG
37135588 AAAAAGAAAAAAAAATAA
1 AAAAAGAAAAAAAAATAA
*
37135606 AAAAAGAAAGAAAAATA
1 AAAAAGAAAAAAAAATA
37135623 CTCATTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.09, T:0.06
Consensus pattern (18 bp):
AAAAAGAAAAAAAAATAA
Found at i:37138777 original size:77 final size:78
Alignment explanation
Indices: 37138683--37138861 Score: 209
Period size: 77 Copynumber: 2.3 Consensus size: 78
37138673 TAGTGATGTT
* * *
37138683 TATCCGGACTTAGGGTCCGCAGGCTATATGCTAGAATTATATCCGGAC-TAGGGTCCGCAGACTA
1 TATCCGGACTTAAGGTCCGCAGGCTATATGCTAGAATTATAACCGGACTTAAGGTCCGCAGACTA
* * *
37138747 TGTGCTGGAATTA
66 CGTGCTAGAAATA
* * * * *
37138760 TATCCGGACTTAAGGTCCGCAAGCTATGTGTTGGAATTATAACCGGACTTAAGGTCCGCAGGCTA
1 TATCCGGACTTAAGGTCCGCAGGCTATATGCTAGAATTATAACCGGACTTAAGGTCCGCAGACTA
37138825 CGTGCTAGAAATA
66 CGTGCTAGAAATA
* * *
37138838 TGTCCGGGC-TAAAGTCCCGCAGGC
1 TATCCGGACTTAAGGT-CCGCAGGC
37138862 ATCGAGCTGG
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
77 47 0.55
78 38 0.45
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TATCCGGACTTAAGGTCCGCAGGCTATATGCTAGAATTATAACCGGACTTAAGGTCCGCAGACTA
CGTGCTAGAAATA
Found at i:37138788 original size:39 final size:39
Alignment explanation
Indices: 37138683--37138844 Score: 193
Period size: 39 Copynumber: 4.2 Consensus size: 39
37138673 TAGTGATGTT
* * *
37138683 TATCCGGACTTAGGGTCCGCAGGCTATATGCTAGAATTA
1 TATCCGGACTTAAGGTCCGCAAGCTATGTGCTAGAATTA
* *
37138722 TATCCGGAC-TAGGGTCCGC-AGACTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAAG-CTATGTGCTAGAATTA
* *
37138760 TATCCGGACTTAAGGTCCGCAAGCTATGTGTTGGAATTA
1 TATCCGGACTTAAGGTCCGCAAGCTATGTGCTAGAATTA
* * * *
37138799 TAACCGGACTTAAGGTCCGCAGGCTACGTGCTAGAAATA
1 TATCCGGACTTAAGGTCCGCAAGCTATGTGCTAGAATTA
*
37138838 TGTCCGG
1 TATCCGG
37138845 GCTAAAGTCC
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
37 1 0.01
38 33 0.31
39 71 0.66
40 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAAGCTATGTGCTAGAATTA
Found at i:37146914 original size:39 final size:39
Alignment explanation
Indices: 37146802--37146962 Score: 198
Period size: 39 Copynumber: 4.2 Consensus size: 39
37146792 CAGTGATGTT
*
37146802 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
37146841 TATTCGGA-GTAGGGCCCACAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* *
37146879 TATCCAGACTTAAGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
37146918 TAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
37146957 TGTCCG
1 TATCCG
37146963 TGCTAAAGTC
Statistics
Matches: 102, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 33 0.32
39 69 0.68
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:37146981 original size:78 final size:77
Alignment explanation
Indices: 37146802--37146957 Score: 177
Period size: 77 Copynumber: 2.0 Consensus size: 77
37146792 CAGTGATGTT
* ** ** * *
37146802 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATTCGGAGTAGGGCCCACAGGCTAT
1 TATCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGAGTAAGGCCCACAGGCTAC
*
37146867 GTGCTGGAATTA
66 GTGCTGGAAATA
* * * * **
37146879 TATCCAGACTTAAGGTCCGTAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCTGCAGGCTA
1 TATCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGA-GTAAGGCCCACAGGCTA
37146944 CGTGCTGGAAATA
65 CGTGCTGGAAATA
37146957 T
1 T
37146958 GTCCGTGCTA
Statistics
Matches: 66, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
77 42 0.64
78 24 0.36
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (77 bp):
TATCCAGACTTAAAGTCCGCAGGCTATGTGCTGGAATTATAACCGGAGTAAGGCCCACAGGCTAC
GTGCTGGAAATA
Found at i:37148548 original size:46 final size:45
Alignment explanation
Indices: 37148473--37148563 Score: 164
Period size: 46 Copynumber: 2.0 Consensus size: 45
37148463 ATTAATGACT
37148473 TAGTTTGATAATTAGGATTTAATTGATTAGAGGCTGTGAGCTAGC
1 TAGTTTGATAATTAGGATTTAATTGATTAGAGGCTGTGAGCTAGC
*
37148518 TAGTTTGATAATTAGGGATTTAATTGATTAGAGGCTGTGTGCTAGC
1 TAGTTTGATAATTA-GGATTTAATTGATTAGAGGCTGTGAGCTAGC
37148564 ATCGTTGACA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 14 0.32
46 30 0.68
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.38
Consensus pattern (45 bp):
TAGTTTGATAATTAGGATTTAATTGATTAGAGGCTGTGAGCTAGC
Found at i:37150820 original size:36 final size:36
Alignment explanation
Indices: 37150780--37150851 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37150770 ATCTTTACAT
37150780 AGTCCCCAACCACTTCGTTTTCCCTTATTAGTAGAC
1 AGTCCCCAACCACTTCGTTTTCCCTTATTAGTAGAC
37150816 AGTCCCCAACCACTTCGTTTTCCCTTATTAGTAGAC
1 AGTCCCCAACCACTTCGTTTTCCCTTATTAGTAGAC
37150852 TTAAAATCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (36 bp):
AGTCCCCAACCACTTCGTTTTCCCTTATTAGTAGAC
Found at i:37151595 original size:57 final size:57
Alignment explanation
Indices: 37151523--37151683 Score: 198
Period size: 57 Copynumber: 2.8 Consensus size: 57
37151513 AAGGCTGCCC
* * * * * *
37151523 TTAACAGGTTTGCCACAAAGGCTTCCCTTTCTAGAGTTTTTCCATAA-GGGTTGTCTT
1 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAGGGGTT-TCCT
* *
37151580 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGACTTTTGCCACAAGGGGTTTCCT
1 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAGGGGTTTCCT
* * **
37151637 TAAATAGGTTCGCCATAAATTCTTACCTTTCCAGAGTTTTTCCACAA
1 TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAA
37151684 AGGTATCTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
57 84 0.94
58 5 0.06
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (57 bp):
TTAATAGGTTCGCCACAAAGGCTTACCTTTCCAGAGTTTTTCCACAAGGGGTTTCCT
Found at i:37151910 original size:53 final size:53
Alignment explanation
Indices: 37151835--37151993 Score: 194
Period size: 53 Copynumber: 3.0 Consensus size: 53
37151825 TTCTTTAAAA
*
37151835 TTTT-CCATATGATGCTATAACCCACTAGTTATAGTCTTACACGATATGATTT
1 TTTTCCCATATGATGCCATAACCCACTAGTTATAGTCTTACACGATATGATTT
* * * * **
37151887 TTTTCCCACATGATGCCATAACCCAGTAGTTATGGTCTTACACGATTTGACCT
1 TTTTCCCATATGATGCCATAACCCACTAGTTATAGTCTTACACGATATGATTT
* * * * * *
37151940 TCTTCTCATATGATGCCATAACCTACCAGTTACAGTCTTACACAATATGATTT
1 TTTTCCCATATGATGCCATAACCCACTAGTTATAGTCTTACACGATATGATTT
37151993 T
1 T
37151994 ATTCAGCACC
Statistics
Matches: 87, Mismatches: 19, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
52 4 0.05
53 83 0.95
ACGTcount: A:0.28, C:0.23, G:0.12, T:0.37
Consensus pattern (53 bp):
TTTTCCCATATGATGCCATAACCCACTAGTTATAGTCTTACACGATATGATTT
Found at i:37154255 original size:48 final size:45
Alignment explanation
Indices: 37154082--37154260 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 45
37154072 GGGTAAGGTA
* *
37154082 CCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAA-
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTCGTCTC--AAG
* *
37154130 CCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTC-AAG
* *
37154176 CTGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAA-G
* *
37154222 CCGATGCCACGTCCTAGACATGGTCTTACACTAGCTCTC
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC
37154261 CTAATGTGGC
Statistics
Matches: 115, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
45 3 0.03
46 60 0.52
47 29 0.25
48 23 0.20
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAG
Found at i:37155158 original size:29 final size:29
Alignment explanation
Indices: 37155126--37155198 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
37155116 TGAAAAGTAT
* * *
37155126 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
37155155 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
37155184 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
37155199 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:37162340 original size:29 final size:29
Alignment explanation
Indices: 37162298--37162370 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
37162288 GTGACAAGAT
37162298 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
37162327 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
1 TGGCACTAAGTGTGCAAGCTTGAAAAGTA
37162356 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
37162371 GAATTTAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCAAGCTTGAAAAGTA
Found at i:37162389 original size:29 final size:29
Alignment explanation
Indices: 37162357--37162429 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
37162347 TGAAAAGTAT
* * *
37162357 GGCACTAAGTGTGCGAATTTAAATTATAC
1 GGCACTAAGTGTGCGAACTTAAATCACAC
* * *
37162386 GGCACTATGTGTGCGAGCTTAAATCACAT
1 GGCACTAAGTGTGCGAACTTAAATCACAC
37162415 GGCACTAAGTGTGCG
1 GGCACTAAGTGTGCG
37162430 TGATCGATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (29 bp):
GGCACTAAGTGTGCGAACTTAAATCACAC
Found at i:37168836 original size:27 final size:28
Alignment explanation
Indices: 37168733--37168839 Score: 105
Period size: 27 Copynumber: 3.9 Consensus size: 28
37168723 AGGAAGCGTC
* *
37168733 CTGGTGACTATGCCACAAATATCTG-AT
1 CTGGTGACTCTGCCACAATTATCTGTAT
* *
37168760 CTGGAGGCTCTGCCAC-ATATATCTGT-T
1 CTGGTGACTCTGCCACAAT-TATCTGTAT
* * *
37168787 CTGGTGGCTCTGCCACGACTATCTGTAT
1 CTGGTGACTCTGCCACAATTATCTGTAT
*
37168815 CTGGTGACTCTGTCAC-ATTATCTGT
1 CTGGTGACTCTGCCACAATTATCTGT
37168840 GCTGGCAACC
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 1 0.01
27 50 0.75
28 16 0.24
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.34
Consensus pattern (28 bp):
CTGGTGACTCTGCCACAATTATCTGTAT
Found at i:37168837 original size:54 final size:54
Alignment explanation
Indices: 37168733--37168844 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
37168723 AGGAAGCGTC
* *
37168733 CTGGTGACTATGCCACAAATATCTGATCTGGAGGCTCTGCCACATATATCTGTT
1 CTGGTGACTATGCCACAAATATCTGATCTGGAGACTCTGCCACATATATCTGTG
* * * * * *
37168787 CTGGTGGCTCTGCCACGACTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTG
1 CTGGTGACTATGCCACAAATATCTG-ATCTGGAGACTCTGCCACATATATCTGTG
37168841 CTGG
1 CTGG
37168845 CAACCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (54 bp):
CTGGTGACTATGCCACAAATATCTGATCTGGAGACTCTGCCACATATATCTGTG
Found at i:37173854 original size:47 final size:48
Alignment explanation
Indices: 37173765--37173888 Score: 157
Period size: 47 Copynumber: 2.6 Consensus size: 48
37173755 GGGTAAGGTG
* **
37173765 CCAATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATCTCA-AA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTAACTCACATCTCATAA
*
37173812 TCAATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCATAA
1 CCAATGCCATGTCCCAGACATGGTCTTACACTAACTCA-CATCTCATAA
* *
37173860 CCGATG-CATGTCCCAAACAT-GTCTTACAC
1 CCAATGCCATGTCCCAGACATGGTCTTACAC
37173889 AGGCCAACGT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 10 0.15
47 52 0.76
48 6 0.09
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (48 bp):
CCAATGCCATGTCCCAGACATGGTCTTACACTAACTCACATCTCATAA
Found at i:37173971 original size:47 final size:46
Alignment explanation
Indices: 37173763--37173972 Score: 133
Period size: 47 Copynumber: 4.5 Consensus size: 46
37173753 GTGGGTAAGG
* * * *
37173763 TGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATCTCA
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCACATCCCA
*** * * *
37173810 AATCAATGCCATGTCCCAGACATGGTCTTACACTAACT-ATCATCTCA
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTCA-CATCCCA
* * * * *
37173857 TAACCGATG-CATGTCCCAAACATGTCTTACAC-AGGC-CAACGTCTCG
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTA-GCTC-ACATCCCA
* * * * * *
37173903 GGGCGAT-ACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAA
1 TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCCC-A
37173949 TGCCGATGCCATGTCCCAGACATG
1 TGCCGATGCCATGTCCCAGACATG
37173973 GCGTCTCGGG
Statistics
Matches: 128, Mismatches: 25, Indels: 20
0.74 0.14 0.12
Matches are distributed among these distances:
45 33 0.26
46 23 0.18
47 67 0.52
48 5 0.04
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.25
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATCCCA
Found at i:37173995 original size:79 final size:78
Alignment explanation
Indices: 37173896--37174052 Score: 305
Period size: 79 Copynumber: 2.0 Consensus size: 78
37173886 CACAGGCCAA
37173896 CGTCTCGGGGCGATACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAATGCCGATGCCAT
1 CGTCTCGGGGCGATACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAATGCCGATGCCAT
37173961 GTCCCAGACATGG
66 GTCCCAGACATGG
37173974 CGTCTCGGGGCCGATACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAATGCCGATGCCA
1 CGTCTCGGGG-CGATACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAATGCCGATGCCA
37174039 TGTCCCAGACATGG
65 TGTCCCAGACATGG
37174053 TCTTCCACTG
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 10 0.13
79 68 0.87
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.24
Consensus pattern (78 bp):
CGTCTCGGGGCGATACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAATGCCGATGCCAT
GTCCCAGACATGG
Found at i:37174047 original size:47 final size:45
Alignment explanation
Indices: 37173982--37174110 Score: 127
Period size: 47 Copynumber: 2.8 Consensus size: 45
37173972 GGCGTCTCGG
* * *
37173982 GGCCGATACATGTTCCAGACATGTCTTACACTAGCTCTCGTCCCAA-T
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT---AAGT
* *
37174029 -GCCGATGCCATGTCCCAGACATGGTCTTCCACTGGCTCTCATAATGT
1 GGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAA-GT
* *
37174076 GGCCGATGTATGTCCCGGACATGTCTTACACTAGC
1 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
37174111 CAACAATAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
45 2 0.03
46 17 0.25
47 26 0.38
48 23 0.34
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (45 bp):
GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAGT
Found at i:37182035 original size:40 final size:39
Alignment explanation
Indices: 37181870--37182053 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
37181860 AAATTGAATG
* * *
37181870 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
37181910 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
37181950 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
37181990 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
37182029 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
37182054 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:37182078 original size:80 final size:81
Alignment explanation
Indices: 37181910--37182098 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
37181900 GCTGGAAATT
* * * *
37181910 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
37181975 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
37181991 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
37182054 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
37182070 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
37182099 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:37189319 original size:40 final size:39
Alignment explanation
Indices: 37189154--37189337 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
37189144 AAATTGAATG
* * *
37189154 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
37189194 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
37189234 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
37189274 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
37189313 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
37189338 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:37189362 original size:80 final size:81
Alignment explanation
Indices: 37189194--37189382 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
37189184 GCTGGAAATT
* * * *
37189194 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
37189259 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
37189275 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
37189338 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
37189354 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
37189383 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:37201625 original size:28 final size:28
Alignment explanation
Indices: 37201594--37201648 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
37201584 TGGTGATGAG
**
37201594 ATTGGCACTAAGTGTGCGTGCTGGAAAT
1 ATTGGCACTAAGTGTGCAAGCTGGAAAT
37201622 ATTGGCACTAAGTGTGCAAGCTGGAAA
1 ATTGGCACTAAGTGTGCAAGCTGGAAA
37201649 AAATACGGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (28 bp):
ATTGGCACTAAGTGTGCAAGCTGGAAAT
Found at i:37224636 original size:46 final size:46
Alignment explanation
Indices: 37224569--37225015 Score: 662
Period size: 46 Copynumber: 9.7 Consensus size: 46
37224559 GATAGAAAAT
* *
37224569 GTGTAAGACCATGGTTGAAAGATACTATGGCAACCTAATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
*
37224615 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
37224661 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
*
37224707 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAG
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
37224753 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
37224799 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
* * *
37224845 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
* *** *
37224891 GTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-TATGAAAC
** * * * * *
37224938 GAATAAGACTATGGTTGAATGATACCATGGCAACATGACA-GAAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAAC
* * * *
37224984 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
37225016 TTATGTCGAA
Statistics
Matches: 374, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
45 1 0.00
46 335 0.90
47 38 0.10
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAC
Found at i:37225124 original size:26 final size:26
Alignment explanation
Indices: 37225094--37225143 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37225084 GTAATATAAC
*
37225094 AAATGGTTAA-ATGAATTGGTTATACA
1 AAATGG-TAATATGAAATGGTTATACA
*
37225120 AAATGGTAATATGAAATGTTTATA
1 AAATGGTAATATGAAATGGTTATA
37225144 GGAATTGGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 18 0.86
ACGTcount: A:0.44, C:0.02, G:0.18, T:0.36
Consensus pattern (26 bp):
AAATGGTAATATGAAATGGTTATACA
Found at i:37239874 original size:44 final size:45
Alignment explanation
Indices: 37239814--37240021 Score: 145
Period size: 46 Copynumber: 4.5 Consensus size: 45
37239804 CGTGCTGATA
* * **
37239814 CATGTCCCATAAATGTCTTACACTAGC-ACATCTCGTA-GCTGACG
1 CATGTCCCAGACATGTCTTACACTAGCAACATCTCG-AGGCCAACG
* * * *
37239858 TATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGC-AACATCTCGAGGCCAACG
** * * * *
37239904 CATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAG-CAACATCTCGAGGCCAACG
* * * * *
37239950 CCATGTCCCAGACATGGTCTTACACTGGCTATCATAAT--ATGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGC-AACAT-CTCGA-GGCCAACG
37239998 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
37240022 GGCACACAAA
Statistics
Matches: 135, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 22 0.16
45 1 0.01
46 58 0.43
47 31 0.23
48 22 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCAACATCTCGAGGCCAACG
Found at i:37239909 original size:46 final size:45
Alignment explanation
Indices: 37239859--37240024 Score: 199
Period size: 46 Copynumber: 3.6 Consensus size: 45
37239849 TAGCTGACGT
* * *
37239859 ATGTCCCAGACATGTCTGACACTGGCTAACATCTCGAGGCCAATGC
1 ATGTCCCAGACATGTCTTACACTGGCTATCATCTC-AGGCCGATGC
* ** *
37239905 ATGTCCCAGACATGTCTTACACTAGCCCTCATCTCAATGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTATCATCTC-AGGCCGATG-C
*
37239952 ATGTCCCAGACATGGTCTTACACTGGCTATCATAAT-ATGGCCGATGC
1 ATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CTCA-GGCCGATGC
37239999 ATGTCCCAGACATGTCTTACACTGGC
1 ATGTCCCAGACATGTCTTACACTGGC
37240025 ACACAAATCT
Statistics
Matches: 103, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
46 50 0.49
47 29 0.28
48 23 0.22
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (45 bp):
ATGTCCCAGACATGTCTTACACTGGCTATCATCTCAGGCCGATGC
Found at i:37251405 original size:11 final size:11
Alignment explanation
Indices: 37251348--37251434 Score: 53
Period size: 11 Copynumber: 8.1 Consensus size: 11
37251338 TTTAGTAGAT
37251348 TTAATATTAA-A
1 TTAAT-TTAATA
37251359 TTAAATTTAATA
1 TT-AATTTAATA
*
37251371 TTTATCTTAATA
1 TTAAT-TTAATA
*
37251383 GT-ATTT--TA
1 TTAATTTAATA
37251391 TTAATTTAATA
1 TTAATTTAATA
*
37251402 TTAAATT-A-A
1 TTAATTTAATA
37251411 TT-ATCTTAATA
1 TTAAT-TTAATA
37251422 TTATATTTAATA
1 TTA-ATTTAATA
37251434 T
1 T
37251435 AATATTTATC
Statistics
Matches: 60, Mismatches: 5, Indels: 21
0.70 0.06 0.24
Matches are distributed among these distances:
8 4 0.07
9 9 0.15
10 4 0.07
11 21 0.35
12 20 0.33
13 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.01, T:0.54
Consensus pattern (11 bp):
TTAATTTAATA
Found at i:37252464 original size:10 final size:10
Alignment explanation
Indices: 37252449--37252473 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37252439 ATATATCTAT
37252449 TTTATAATTG
1 TTTATAATTG
37252459 TTTATAATTG
1 TTTATAATTG
37252469 TTTAT
1 TTTAT
37252474 TTTTCATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.64
Consensus pattern (10 bp):
TTTATAATTG
Found at i:37257821 original size:28 final size:28
Alignment explanation
Indices: 37257789--37257846 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
37257779 TTGTGAGAAA
37257789 GAAAACTTACTTCAATACATAATCTAAT
1 GAAAACTTACTTCAATACATAATCTAAT
37257817 GAAAACTTACTTCAATACATAATCTAAT
1 GAAAACTTACTTCAATACATAATCTAAT
37257845 GA
1 GA
37257847 GTCCATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.31
Consensus pattern (28 bp):
GAAAACTTACTTCAATACATAATCTAAT
Found at i:37259558 original size:21 final size:21
Alignment explanation
Indices: 37259533--37259572 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
37259523 AGTGACCTTA
*
37259533 TATTA-AAATGGTTTTATATTT
1 TATTATAAA-GGTTATATATTT
37259554 TATTATAAAGGTTATATAT
1 TATTATAAAGGTTATATAT
37259573 GTAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.53
Consensus pattern (21 bp):
TATTATAAAGGTTATATATTT
Found at i:37262631 original size:20 final size:17
Alignment explanation
Indices: 37262608--37262658 Score: 50
Period size: 20 Copynumber: 2.8 Consensus size: 17
37262598 ATAGTATTTT
37262608 ATTAATTTAATATTACAGCA
1 ATTAATTTAATATTA-A--A
37262628 ATT-ATTGTAATATTAAA
1 ATTAATT-TAATATTAAA
*
37262645 TTTAATTTAATATT
1 ATTAATTTAATATT
37262659 TATCTTGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 10 0.36
18 3 0.11
19 4 0.14
20 11 0.39
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (17 bp):
ATTAATTTAATATTAAA
Found at i:37262756 original size:24 final size:24
Alignment explanation
Indices: 37262687--37262761 Score: 57
Period size: 26 Copynumber: 3.0 Consensus size: 24
37262677 TCTATTAGTT
37262687 TAATATATTTAATATT-AAGT-TTA
1 TAATA-ATTTAATATTAAAGTATTA
* *
37262710 -ATATAATATTTATCTTGATAAGTATTA
1 TA-ATAAT-TTAATATT-A-AAGTATTA
37262737 TAATAATTTAATATTAAAGTGATTA
1 TAATAATTTAATATTAAAGT-ATTA
37262762 AGTTTAATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 14
0.69 0.07 0.24
Matches are distributed among these distances:
22 3 0.08
23 9 0.22
24 4 0.10
25 5 0.12
26 10 0.25
27 8 0.20
28 1 0.03
ACGTcount: A:0.44, C:0.01, G:0.07, T:0.48
Consensus pattern (24 bp):
TAATAATTTAATATTAAAGTATTA
Found at i:37262762 original size:58 final size:61
Alignment explanation
Indices: 37262636--37262769 Score: 152
Period size: 58 Copynumber: 2.2 Consensus size: 61
37262626 CAATTATTGT
* * * * * *
37262636 AATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTCTATTAGTTTAATATATTT
1 AATATTAAGTTTAATATAATATTTATCTTGTAGATAAATATTATAATAATTTAATATATTA
*
37262697 AATATTAAGTTTAATATAATATTTATC-T-T-GATAAGTATTATAATAATTT-A-ATATTA
1 AATATTAAGTTTAATATAATATTTATCTTGTAGATAAATATTATAATAATTTAATATATTA
37262753 AAGTGATTAAGTTTAAT
1 AA-T-ATTAAGTTTAAT
37262770 TATAGTTGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
56 7 0.11
57 2 0.03
58 28 0.44
59 1 0.02
60 1 0.02
61 25 0.39
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
AATATTAAGTTTAATATAATATTTATCTTGTAGATAAATATTATAATAATTTAATATATTA
Found at i:37266433 original size:50 final size:48
Alignment explanation
Indices: 37266326--37266504 Score: 204
Period size: 50 Copynumber: 3.7 Consensus size: 48
37266316 TTATTTGTGT
* *
37266326 GCTAGTGTAAGA-CATGTCTGGGACAT-TCATCGACCAC-ATTCTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG-GCACGATTCTGAGA
* * *
37266372 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GAT-TCTGAGA
* * * *
37266422 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CACGATTCTGAGA
37266471 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCG
37266505 ACTTGATGGA
Statistics
Matches: 114, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
46 11 0.10
47 17 0.15
48 6 0.05
49 37 0.32
50 41 0.36
51 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATTCTGAGA
Found at i:37266494 original size:99 final size:96
Alignment explanation
Indices: 37266326--37266504 Score: 268
Period size: 99 Copynumber: 1.8 Consensus size: 96
37266316 TTATTTGTGT
*
37266326 GCTAGTGTAAGACATGTCTGGGACATTCATCGACCACATTCTGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTCTGAGAGCCAGTGTAAGACCATGTC
37266391 TGGGACATGGCATCGGCACGGATATGTAAGA
66 TGGGACATGGCATCGGCACGGATATGTAAGA
* * * * * *
37266422 GCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGTCAGTGTAAGACCAT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCAC-ATTCTGAGAGCCAGTGTAAGACCAT
37266487 GTCTGGGACATGGCATCG
63 GTCTGGGACATGGCATCG
37266505 ACTTGATGGA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
96 12 0.16
97 14 0.19
98 7 0.10
99 40 0.55
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (96 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACATTCTGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCATCGGCACGGATATGTAAGA
Found at i:37285064 original size:9 final size:9
Alignment explanation
Indices: 37285052--37285110 Score: 55
Period size: 9 Copynumber: 6.1 Consensus size: 9
37285042 TTTGATAAAC
37285052 ATGATATGT
1 ATGATATGT
*
37285061 ATGATATGCAC
1 ATGATATG--T
*
37285072 ATGACATGT
1 ATGATATGT
*
37285081 ATGATATGCAC
1 ATGATATG--T
37285092 ATGATATGT
1 ATGATATGT
37285101 ATGATATGT
1 ATGATATGT
37285110 A
1 A
37285111 CATGAGATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 25 0.62
11 15 0.38
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.36
Consensus pattern (9 bp):
ATGATATGT
Found at i:37285075 original size:20 final size:20
Alignment explanation
Indices: 37285050--37285120 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
37285040 ATTTTGATAA
37285050 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37285070 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37285090 ACATGATATGTATGATATGT
1 ACATGATATGTATGATATGC
*
37285110 ACATGAGATGT
1 ACATGATATGT
37285121 TCATAAATGC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.