Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 130 of 328
Found at i:37630512 original size:16 final size:16
Alignment explanation
Indices: 37630491--37630522 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
37630481 TTGATTCATG
37630491 ATTTCCGTACATATGT
1 ATTTCCGTACATATGT
37630507 ATTTCCGTACATATGT
1 ATTTCCGTACATATGT
37630523 GACTTTAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (16 bp):
ATTTCCGTACATATGT
Found at i:37631003 original size:39 final size:40
Alignment explanation
Indices: 37630902--37631079 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
37630892 TCGAATGGTG
* * *
37630902 TCCGGGCTAAGT-CCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
37630942 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
37630982 ACCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
37631021 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
37631062 -CCGGGCTATGTCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
37631080 ACAATCGAGC
Statistics
Matches: 113, Mismatches: 20, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 34 0.30
40 61 0.54
41 18 0.16
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:37631039 original size:79 final size:80
Alignment explanation
Indices: 37630903--37631079 Score: 205
Period size: 79 Copynumber: 2.2 Consensus size: 80
37630893 CGAATGGTGT
* * *
37630903 CCGGGCTAAGTCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
37630968 TGCGAGTTACCAAAA
66 TGCGAGTTACCAAAA
* * * * *
37630983 CCGGGTTAAGTCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGG-CTAATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCGAAGGCAATT
* * * *
37631046 GTGCGAATCACTATAA
65 GTGCGAGTTACCAAAA
*
37631062 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGT-CCGAAG
37631080 ACAATCGAGC
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.01
79 50 0.62
80 30 0.37
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCAATTG
TGCGAGTTACCAAAA
Found at i:37631100 original size:40 final size:40
Alignment explanation
Indices: 37631022--37631105 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
37631012 GTTATTAAAT
* * *
37631022 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
37631062 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
37631102 CCGG
1 CCGG
37631106 TTAAATTCCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:37636445 original size:29 final size:29
Alignment explanation
Indices: 37636383--37636485 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
37636373 GTGACGAGAT
* * *
37636383 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
37636412 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
37636441 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
37636470 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37636486 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:37644442 original size:29 final size:29
Alignment explanation
Indices: 37644380--37644482 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
37644370 GTGACGAGAT
* * *
37644380 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
37644409 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
37644438 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
37644467 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
37644483 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:37650765 original size:28 final size:28
Alignment explanation
Indices: 37650733--37650802 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
37650723 TATGGTACTC
*
37650733 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
37650761 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCGAAATATTGAGAATGACACTT
*
37650789 AGTGTGCAAAATAT
1 AGTGTGCGAAATAT
37650803 CAAATGATTC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (28 bp):
AGTGTGCGAAATATTGAGAATGACACTT
Found at i:37662863 original size:2 final size:2
Alignment explanation
Indices: 37662856--37662880 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37662846 ATGGTTGCAA
37662856 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
37662881 GAAGAATCAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37667980 original size:24 final size:25
Alignment explanation
Indices: 37667937--37667983 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
37667927 TTATAATATG
* *
37667937 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATGACCCTAGGTA
37667962 AAAATGACCATTAT-ACCCTAGG
1 AAAATGACCATTATGACCCTAGG
37667984 GTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (25 bp):
AAAATGACCATTATGACCCTAGGTA
Found at i:37668067 original size:11 final size:11
Alignment explanation
Indices: 37668031--37668086 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
37668021 CATGGTATGT
37668031 ATGATATGCAC
1 ATGATATGCAC
* *
37668042 ATGACATG--T
1 ATGATATGCAC
37668051 ATGATATGCAC
1 ATGATATGCAC
*
37668062 ATGATATG--T
1 ATGATATGCAC
37668071 ATGATATGCAC
1 ATGATATGCAC
37668082 ATGAT
1 ATGAT
37668087 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:37668086 original size:20 final size:20
Alignment explanation
Indices: 37668020--37668086 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
37668010 ATTTTGATAA
*
37668020 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
37668040 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
37668060 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37668080 ACATGAT
1 ACATGAT
37668087 GTATTCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37668162 original size:24 final size:24
Alignment explanation
Indices: 37668135--37668374 Score: 340
Period size: 24 Copynumber: 10.0 Consensus size: 24
37668125 GGAGGAAGTA
37668135 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37668159 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37668183 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37668207 CAAAAGGGCTTATGCCCCAG-TAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37668230 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37668254 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37668278 TAAAAGGGCTTATGCCCCTGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
37668302 TAAAAGAGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * *
37668326 TAAAAGGGCTTTTGTCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37668350 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
37668375 ATGATAAAGC
Statistics
Matches: 199, Mismatches: 14, Indels: 5
0.91 0.06 0.02
Matches are distributed among these distances:
23 23 0.12
24 165 0.83
25 11 0.06
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:37668301 original size:95 final size:95
Alignment explanation
Indices: 37668131--37668374 Score: 341
Period size: 95 Copynumber: 2.6 Consensus size: 95
37668121 GGATGGAGGA
*
37668131 AGTA-CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCTAGTTATCAAAAGGGCTTA
1 AGTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTA
*
37668195 TGCCCTAGTTATCAAAAGGGCTTATGCCCC
66 TGCCCTAGTTATCAAAAGAGCTTATGCCCC
*
37668225 AGTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTA
1 AGTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTA
* *
37668290 TGCCCCT-GTTATTAAAAGAGCTTATGCCTC
66 TG-CCCTAGTTATCAAAAGAGCTTATGCCCC
* * * * *
37668320 AGTTATTAAAAGGGCTTTTGTCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTAT
1 AG-TATCAAAAGGGCTTATGCCCCAGTTATCAAAAG-GGCTTATGCC-CCAGTTAT
37668375 ATGATAAAGC
Statistics
Matches: 135, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
94 4 0.03
95 82 0.61
96 38 0.28
97 11 0.08
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (95 bp):
AGTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTA
TGCCCTAGTTATCAAAAGAGCTTATGCCCC
Found at i:37675698 original size:20 final size:20
Alignment explanation
Indices: 37675675--37675713 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
37675665 TAAACATGGT
37675675 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
37675695 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37675714 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:37675790 original size:24 final size:24
Alignment explanation
Indices: 37675763--37675896 Score: 241
Period size: 24 Copynumber: 5.6 Consensus size: 24
37675753 GGAGGAAGTG
37675763 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37675787 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37675811 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37675835 CAAAAGGGCTTATGCCTCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37675859 TAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37675883 CAAAAGGGCTTATG
1 CAAAAGGGCTTATG
37675897 TGACAGCCCT
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 104 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:37678255 original size:49 final size:49
Alignment explanation
Indices: 37678195--37678302 Score: 207
Period size: 49 Copynumber: 2.2 Consensus size: 49
37678185 GTATGAGATA
37678195 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
*
37678244 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
37678293 TATATATGTG
1 TATATATGTG
37678303 TGAAAGTGTG
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 58 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.32
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTG
Found at i:37678306 original size:20 final size:20
Alignment explanation
Indices: 37678281--37678322 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
37678271 ATGTGATGAA
37678281 TGTGAAAGTGTGTATATATG
1 TGTGAAAGTGTGTATATATG
37678301 TGTGAAAGTGTGTATATATG
1 TGTGAAAGTGTGTATATATG
37678321 TG
1 TG
37678323 ATAAGGCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (20 bp):
TGTGAAAGTGTGTATATATG
Found at i:37678307 original size:69 final size:69
Alignment explanation
Indices: 37678232--37678371 Score: 280
Period size: 69 Copynumber: 2.0 Consensus size: 69
37678222 ATGTGATGAA
37678232 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
37678297 TATG
66 TATG
37678301 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
37678366 TATG
66 TATG
37678370 TG
1 TG
37678372 ATAAGGCCTA
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 71 1.00
ACGTcount: A:0.30, C:0.06, G:0.31, T:0.34
Consensus pattern (69 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATA
TATG
Found at i:37678327 original size:118 final size:118
Alignment explanation
Indices: 37678195--37678535 Score: 570
Period size: 118 Copynumber: 2.9 Consensus size: 118
37678185 GTATGAGATA
*
37678195 TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
37678260 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGTGAAAGTGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGAGAAAGTGTG
37678313 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
37678378 CCTAATGGCCGATGTGATGAATGAGAAAGTGATGTGATGA-A--TGAGAAAGTGTG
66 CCTAATGGCCGATGTGATGAATGTGAAAGTG-TGT-AT-ATATGTGAGAAAGTGTG
37678431 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
*
37678496 CC---T-GCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
66 CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGA
37678536 TAAGGCCTAA
Statistics
Matches: 212, Mismatches: 5, Indels: 16
0.91 0.02 0.07
Matches are distributed among these distances:
111 1 0.00
112 3 0.01
113 2 0.01
114 26 0.12
115 1 0.00
118 172 0.81
119 3 0.01
120 3 0.01
121 1 0.00
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (118 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGG
CCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATATGTGAGAAAGTGTG
Found at i:37678356 original size:49 final size:49
Alignment explanation
Indices: 37678301--37678408 Score: 207
Period size: 49 Copynumber: 2.2 Consensus size: 49
37678291 TGTATATATG
37678301 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
37678350 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
37678399 TGAGAAAGTG
1 TGTGAAAGTG
37678409 ATGTGATGAA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 58 1.00
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.30
Consensus pattern (49 bp):
TGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
Found at i:37678412 original size:69 final size:69
Alignment explanation
Indices: 37678339--37678477 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 69
37678329 CCTAATGGCC
*
37678339 GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGA
1 GATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGA
37678404 AAGT
66 AAGT
*
37678408 GATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGA
37678473 AAGT
66 AAGT
37678477 G
1 G
37678478 TGTATATATG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.33, C:0.06, G:0.32, T:0.29
Consensus pattern (69 bp):
GATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGAGA
AAGT
Found at i:37678413 original size:20 final size:20
Alignment explanation
Indices: 37678388--37678428 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
37678378 CCTAATGGCC
37678388 GATGTGATGAATGAGAAAGT
1 GATGTGATGAATGAGAAAGT
37678408 GATGTGATGAATGAGAAAGT
1 GATGTGATGAATGAGAAAGT
37678428 G
1 G
37678429 TGTATATATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (20 bp):
GATGTGATGAATGAGAAAGT
Found at i:37678463 original size:49 final size:49
Alignment explanation
Indices: 37678408--37678615 Score: 338
Period size: 49 Copynumber: 4.4 Consensus size: 49
37678398 ATGAGAAAGT
*
37678408 GATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC
37678457 GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCC---T-GCC
1 GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC
*
37678502 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC
* *
37678551 AATGTGATGAATGTGAAA--GTGTATATATATGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC
37678598 GATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAA
37678616 TATATGTGTG
Statistics
Matches: 149, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
45 43 0.29
46 1 0.01
47 44 0.30
48 1 0.01
49 60 0.40
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCC
Found at i:37678520 original size:94 final size:94
Alignment explanation
Indices: 37678408--37678615 Score: 330
Period size: 94 Copynumber: 2.2 Consensus size: 94
37678398 ATGAGAAAGT
* * *
37678408 GATGTGATGAATGAGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
*
37678473 AAGTGTGTATATATGTGATAAGGCC-T-GCC
66 AA--GTGTATATATATGATAAGGCCATGGCC
37678502 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
37678567 AAGTGTATATATATGATAAGGCCTAATGGCC
66 AAGTGTATATATATGATAAGGCC--ATGGCC
37678598 GATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAA
37678616 TATATGTGTG
Statistics
Matches: 106, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
92 20 0.19
94 64 0.60
95 1 0.01
96 21 0.20
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGA
AAGTGTATATATATGATAAGGCCATGGCC
Found at i:37678756 original size:37 final size:37
Alignment explanation
Indices: 37678702--37678792 Score: 164
Period size: 37 Copynumber: 2.4 Consensus size: 37
37678692 AACTTGGAAA
*
37678702 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACGTGTGGAGAT
37678740 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
37678777 TATGTCCGGGTAAGAC
1 TATGTCCGGGTAAGAC
37678793 GGGTAAGACT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 48 0.92
38 4 0.08
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:37680212 original size:24 final size:24
Alignment explanation
Indices: 37680172--37680271 Score: 139
Period size: 24 Copynumber: 4.1 Consensus size: 24
37680162 GGGTGTTACA
*
37680172 GCTTATGGCCTAGTTATTAAAAGG
1 GCTTATGCCCTAGTTATTAAAAGG
*
37680196 GCTTATGCCCCTA-TTATTAAAAGT
1 GCTTATG-CCCTAGTTATTAAAAGG
37680220 GCTTATGCCCTAGTTATTAAAAGG
1 GCTTATGCCCTAGTTATTAAAAGG
* *
37680244 GCTTTTGCCCCAGTTATTAAAAGAG
1 GCTTATGCCCTAGTTATTAAAAG-G
37680269 GCT
1 GCT
37680272 AGGCCTCCAG
Statistics
Matches: 68, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
23 5 0.07
24 55 0.81
25 8 0.12
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (24 bp):
GCTTATGCCCTAGTTATTAAAAGG
Found at i:37680243 original size:48 final size:48
Alignment explanation
Indices: 37680172--37680266 Score: 156
Period size: 48 Copynumber: 2.0 Consensus size: 48
37680162 GGGTGTTACA
*
37680172 GCTTATGGCCTAGTTATTAAAAGGGCTTATGCCCCTA-TTATTAAAAGT
1 GCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCC-AGTTATTAAAAGT
*
37680220 GCTTATGCCCTAGTTATTAAAAGGGCTTTTGCCCCAGTTATTAAAAG
1 GCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAG
37680267 AGGCTAGGCC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 1 0.02
48 43 0.98
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (48 bp):
GCTTATGCCCTAGTTATTAAAAGGGCTTATGCCCCAGTTATTAAAAGT
Found at i:37680281 original size:25 final size:24
Alignment explanation
Indices: 37680183--37680285 Score: 111
Period size: 24 Copynumber: 4.2 Consensus size: 24
37680173 CTTATGGCCT
*
37680183 AGTTATTAAAAGGGCTTATGCCCC
1 AGTTATTAAAAGGGCTTAGGCCCC
* * *
37680207 TA-TTATTAAAAGTGCTTATGCCCT
1 -AGTTATTAAAAGGGCTTAGGCCCC
**
37680231 AGTTATTAAAAGGGCTTTTGCCCC
1 AGTTATTAAAAGGGCTTAGGCCCC
37680255 AGTTATTAAAAGAGGC-TAGGCCTCC
1 AGTTATTAAAAG-GGCTTAGGCC-CC
37680280 AGTTAT
1 AGTTAT
37680286 ATGATAAAGC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.01
24 55 0.81
25 12 0.18
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.33
Consensus pattern (24 bp):
AGTTATTAAAAGGGCTTAGGCCCC
Found at i:37683171 original size:20 final size:20
Alignment explanation
Indices: 37683146--37683212 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
37683136 CACACACATG
*
37683146 CCCTTGATTGTACTTTGGTA
1 CCCTTGATTGTACTTAGGTA
* *
37683166 CCCTTGATTGCACATACGTGT-
1 CCCTTGATTGTACTTA-G-GTA
37683187 CCC-TGATTGTACTTAGGTA
1 CCCTTGATTGTACTTAGGTA
37683206 CCCTTGA
1 CCCTTGA
37683213 ATGCACATAC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
18 2 0.05
19 4 0.11
20 26 0.68
21 4 0.11
22 2 0.05
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.37
Consensus pattern (20 bp):
CCCTTGATTGTACTTAGGTA
Found at i:37683194 original size:40 final size:40
Alignment explanation
Indices: 37683136--37683248 Score: 149
Period size: 40 Copynumber: 2.8 Consensus size: 40
37683126 TTTGAATACA
* *
37683136 CACACACATGCC-CTTGATTGTACTTTGGTACCCTTGATTG
1 CACATACATGCCGC-TGATTGTACTTTGGTACCCTTGAATG
* *
37683176 CACATACGTGTCC-CTGATTGTACTTAGGTACCCTTGAATG
1 CACATACATG-CCGCTGATTGTACTTTGGTACCCTTGAATG
*
37683216 CACATACATGCCGCTGTTTGTACTTTGGTACCC
1 CACATACATGCCGCTGATTGTACTTTGGTACCC
37683249 CTAAATGGAT
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
39 2 0.03
40 59 0.92
41 3 0.05
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (40 bp):
CACATACATGCCGCTGATTGTACTTTGGTACCCTTGAATG
Found at i:37683273 original size:40 final size:40
Alignment explanation
Indices: 37683153--37683287 Score: 146
Period size: 40 Copynumber: 3.4 Consensus size: 40
37683143 ATGCCCTTGA
* *
37683153 TTGTACTTTGGTACCCTTGATTGCACATACGTGT-CCCTGA
1 TTGTACTTTGGTACCCTTGAATGCACATACGT-TCCCCTGT
* * * *
37683193 TTGTACTTAGGTACCCTTGAATGCACATACATGCCGCTGT
1 TTGTACTTTGGTACCCTTGAATGCACATACGTTCCCCTGT
* * * *
37683233 TTGTACTTTGGTACCCCTAAATGGATATACGTTCCCCTGT
1 TTGTACTTTGGTACCCTTGAATGCACATACGTTCCCCTGT
* *
37683273 TTGTACCTTAGTACC
1 TTGTACTTTGGTACC
37683288 TATAACATCG
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (40 bp):
TTGTACTTTGGTACCCTTGAATGCACATACGTTCCCCTGT
Found at i:37683277 original size:80 final size:80
Alignment explanation
Indices: 37683136--37683287 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 80
37683126 TTTGAATACA
* * *
37683136 CACACACATGCCCTTGATTGTACTTTGGTACCCTTGATTGCACATACGTGTCCCTGATTGTA-CT
1 CACACACATGCCCTTGATTGTACTTTGGTACCCCTAAATGCACATACGTGTCCCTGATTGTACCT
37683200 TAGGTACCCTTGAATG
66 TA-GTACCCTTGAATG
* * * * *
37683216 CACATACATGCCGC-TGTTTGTACTTTGGTACCCCTAAATGGATATACGT-TCCCCTGTTTGTAC
1 CACACACATGCC-CTTGATTGTACTTTGGTACCCCTAAATGCACATACGTGT-CCCTGATTGTAC
37683279 CTTAGTACC
64 CTTAGTACC
37683288 TATAACATCG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
79 1 0.02
80 55 0.90
81 5 0.08
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (80 bp):
CACACACATGCCCTTGATTGTACTTTGGTACCCCTAAATGCACATACGTGTCCCTGATTGTACCT
TAGTACCCTTGAATG
Found at i:37684556 original size:34 final size:34
Alignment explanation
Indices: 37684518--37684586 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
37684508 AGCACACTGT
* *
37684518 ATGCTCG-AATGAGCCATTCCAACTAGCACACCAA
1 ATGCTCGTAA-GAGCCAATCCAACCAGCACACCAA
*
37684552 ATGCTCGTAAGAGCCAATCCATCCAGCACACCAA
1 ATGCTCGTAAGAGCCAATCCAACCAGCACACCAA
37684586 A
1 A
37684587 ATGCCTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
34 29 0.94
35 2 0.06
ACGTcount: A:0.36, C:0.33, G:0.14, T:0.16
Consensus pattern (34 bp):
ATGCTCGTAAGAGCCAATCCAACCAGCACACCAA
Found at i:37686598 original size:30 final size:30
Alignment explanation
Indices: 37686533--37686598 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
37686523 ACACGGCCAT
* *
37686533 GTGTCACACACGGCCTAGCGACACAGTTGT
1 GTGTCACACACGGCCTAGCGACACAGCTGG
* * * *
37686563 ATGTCACACACGGCCTGGTGACACGGCTGG
1 GTGTCACACACGGCCTAGCGACACAGCTGG
37686593 GTGTCA
1 GTGTCA
37686599 TTTGTAAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.21, C:0.29, G:0.30, T:0.20
Consensus pattern (30 bp):
GTGTCACACACGGCCTAGCGACACAGCTGG
Found at i:37691617 original size:207 final size:208
Alignment explanation
Indices: 37691261--37691638 Score: 686
Period size: 207 Copynumber: 1.8 Consensus size: 208
37691251 GAGATGAAGG
37691261 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTAC
1 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTAC
*
37691326 ATTGAGAAACTTCTTTGCATGTTCAATATGCAGAATGCCAAGGCTGTTAGGACTCTATTAACAGT
66 ATTGAGAAACTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCTATTAACAGT
* *
37691391 CCACTTTAGACTTTCATCAGCTTTGTCTCTACAATCAAATGTATCTATATATAAAGGAGATTCTC
131 CAACTTCAGACTTTCATCAGCTTTGTCTCTACAATCAAATGTATCTATATATAAAGGAGATTCTC
37691456 AGACAAATAAGAT
196 AGACAAATAAGAT
37691469 ACTTGGGATGGAGATTCTCAGAGATAG-AAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTAC
1 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTAC
* *
37691533 ATTGAGAAAGTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCTGTTAACAGT
66 ATTGAGAAACTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCTATTAACAGT
* *
37691598 CAACTTCAGACTTTCATCAGCTTTTTCTCTGCAATCAAATG
131 CAACTTCAGACTTTCATCAGCTTTGTCTCTACAATCAAATG
37691639 ATGAGATTGA
Statistics
Matches: 163, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
207 136 0.83
208 27 0.17
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (208 bp):
ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTAC
ATTGAGAAACTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCTATTAACAGT
CAACTTCAGACTTTCATCAGCTTTGTCTCTACAATCAAATGTATCTATATATAAAGGAGATTCTC
AGACAAATAAGAT
Found at i:37693170 original size:119 final size:119
Alignment explanation
Indices: 37692958--37693177 Score: 271
Period size: 119 Copynumber: 1.8 Consensus size: 119
37692948 AGAAAAATTA
* * * * * ** *
37692958 TTTAAGCTCAACTCCTATCTCTTAAGCTGTAGCCTCACCTTTGTATGATCTACTATTGGTTTTAA
1 TTTAAACTCAAATCCTATCTCTCAAGCTGCAACCTCACCTTTGTACAATCTACTATTGGTTCTAA
* *
37693023 CTCATTGCTCTTTCAATCACTTAGAAAGTGTCTACAGTAACCATCTAAGAATGG
66 CACATTGCTCTTTCAATCACTTAAAAAGTGTCTACAGTAACCATCTAAGAATGG
* * *
37693077 TTTAAACTCAAATCCTATCTCTCAAGTTGCAATCTCACCTTTGTACAATCTATTATTGGTTCTAA
1 TTTAAACTCAAATCCTATCTCTCAAGCTGCAACCTCACCTTTGTACAATCTACTATTGGTTCTAA
* * * *
37693142 CACCTTGTTC-TTCTGATCACTTAAAAAGTGTTTACA
66 CACATTGCTCTTTC-AATCACTTAAAAAGTGTCTACA
37693178 ACTACTATCT
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
118 3 0.04
119 80 0.96
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (119 bp):
TTTAAACTCAAATCCTATCTCTCAAGCTGCAACCTCACCTTTGTACAATCTACTATTGGTTCTAA
CACATTGCTCTTTCAATCACTTAAAAAGTGTCTACAGTAACCATCTAAGAATGG
Found at i:37697782 original size:40 final size:39
Alignment explanation
Indices: 37697738--37697954 Score: 171
Period size: 40 Copynumber: 5.4 Consensus size: 39
37697728 GCCACTCGTT
* *
37697738 CAAATACCTTCGGGAC-ATGGCCCGATTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTAT-GCCCGATT-TAGTAACTCGCA
* *
37697778 CAAATGCCTTCGGGACTTATTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGAC-TATGCCCGATTTAGTAACTCGCA
* *
37697818 CAAATGCCTTC-GGATCT-TAGTCCGAATTTAGTAACTCACA
1 CAAATGCCTTCGGGA-CTAT-GCCCG-ATTTAGTAACTCGCA
*
37697858 CAAATGCCTTC-GGATCT-TAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTAT-G-CCCGATTTAGTAACTCGCA
* * *
37697898 CAAATGCCTTC-GGATCT-TAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTAT-G-CCCGATTTAGTAAC-TCGCA
37697939 CAAA-GCCTTCGGGACT
1 CAAATGCCTTCGGGACT
37697955 TAGCCCGGAC
Statistics
Matches: 156, Mismatches: 13, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 128 0.82
41 19 0.12
42 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTATGCCCGATTTAGTAACTCGCA
Found at i:37697860 original size:80 final size:80
Alignment explanation
Indices: 37697766--37697963 Score: 301
Period size: 80 Copynumber: 2.5 Consensus size: 80
37697756 GGCCCGATTA
* * *
37697766 TAGTAGCTCGCACAAATGCCTTCGGGACTTATTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
1 TAGTAACTCACACAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
37697831 ATCTTAGTCCGAATT
66 ATCTTAGTCCGAATT
37697846 TAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCG
1 TAGTAACTCACACAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCG
*
37697910 GATCTTAGTCCGGATT
65 GATCTTAGTCCGAATT
* * *
37697926 TAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TAGTAACTCA-CACAAATGCCTTCGGGACTTAGTCCGGA
37697964 CATCATTCGA
Statistics
Matches: 108, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
79 3 0.03
80 96 0.89
81 9 0.08
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (80 bp):
TAGTAACTCACACAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGG
ATCTTAGTCCGAATT
Found at i:37697957 original size:40 final size:40
Alignment explanation
Indices: 37697761--37697963 Score: 261
Period size: 40 Copynumber: 5.0 Consensus size: 40
37697751 GACATGGCCC
* * *
37697761 GATTATAGTAGCTCGCACAAATGCCTTCGGGA-CTTATTCCG
1 GATT-TAGTAACTAGCACAAATGCCTTC-GGATCTTAGTCCG
*
37697802 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 GATTTAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCG
*
37697842 AATTTAGTAACTCA-CACAAATGCCTTCGGATCTTAGTCCG
1 GATTTAGTAACT-AGCACAAATGCCTTCGGATCTTAGTCCG
*
37697882 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 GATTTAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCG
* *
37697922 GATTTAGTCACTTAGCACAAA-GCCTTCGGGA-CTTAGCCCG
1 GATTTAGTAAC-TAGCACAAATGCCTTC-GGATCTTAGTCCG
37697962 GA
1 GA
37697964 CATCATTCGA
Statistics
Matches: 148, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
39 3 0.02
40 130 0.88
41 15 0.10
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (40 bp):
GATTTAGTAACTAGCACAAATGCCTTCGGATCTTAGTCCG
Found at i:37706037 original size:40 final size:40
Alignment explanation
Indices: 37705924--37706107 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
37705914 GCCACTCGTT
* * * *
37705924 CAAATACCTTCGGGACAT-GCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATT-TAGTAACTCGCA
37705963 CAAATGCCTTCGGGACTTA-TCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
37706002 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAACTCGCA
* *
37706042 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGTCCGGATTTAGTAAC-TCGCA
*
37706083 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGTCCGGA
37706108 CATCATTCGA
Statistics
Matches: 132, Mismatches: 7, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
38 3 0.02
39 46 0.35
40 72 0.55
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGTCCGGATTTAGTAACTCGCA
Found at i:37712684 original size:61 final size:62
Alignment explanation
Indices: 37712547--37712694 Score: 162
Period size: 61 Copynumber: 2.4 Consensus size: 62
37712537 CTTCTAGGTA
* * * *
37712547 AAACTCTGGATAGGAAAGCCTTTGTGTCGAGTAGTAGATATAATGGATAGTCTTTATAGCGT
1 AAACTCTTGATAGGAAAGCCTTTGTGTCGAGTAATAGATATAAAGGATAGCCTTTATAGCGT
* * *
37712609 AAA-T-TTGGACAGGAAAGCCTTTGTAG-CGAGTAAT-GAATGTAAAGGATAGCCTTTATGGCG-
1 AAACTCTT-GATAGGAAAGCCTTTGT-GTCGAGTAATAG-ATATAAAGGATAGCCTTTATAGCGT
*
37712669 AAACTCTTGATAGGAAAGCTTTTGTG
1 AAACTCTTGATAGGAAAGCCTTTGTG
37712695 GAAACCTCTT
Statistics
Matches: 72, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
60 6 0.08
61 60 0.83
62 6 0.08
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (62 bp):
AAACTCTTGATAGGAAAGCCTTTGTGTCGAGTAATAGATATAAAGGATAGCCTTTATAGCGT
Found at i:37717791 original size:43 final size:42
Alignment explanation
Indices: 37717730--37717898 Score: 164
Period size: 43 Copynumber: 4.0 Consensus size: 42
37717720 TAGGGTTTCT
*
37717730 GATATGTGTTCTCATGTAAGACCACATCTGGGACGTTGGCATC
1 GATATGTGAT-TCATGTAAGACCACATCTGGGACGTTGGCATC
** * * *
37717773 GATATGTGATTACATGTAAGACCATGTGTGGGACTTTGGCATT
1 GATATGTGATT-CATGTAAGACCACATCTGGGACGTTGGCATC
* ** * *
37717816 G-TATTTGATTTGTGTAAGACC-CTGTTTGGGACAG-TGGCATC
1 GATATGTGATTCATGTAAGACCAC-ATCTGGGAC-GTTGGCATC
*
37717857 GATATGTGATTGCATGTAAGACCATATCTGGGACGTTGGCAT
1 GATATGTGATT-CATGTAAGACCACATCTGGGACGTTGGCAT
37717899 TGTATGATAT
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 24 0.24
42 18 0.18
43 58 0.58
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (42 bp):
GATATGTGATTCATGTAAGACCACATCTGGGACGTTGGCATC
Found at i:37720007 original size:33 final size:33
Alignment explanation
Indices: 37719965--37720033 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
37719955 AGTCCAAATG
37719965 CTTATTGATAGTACTAGAAACAACATATGTTTT
1 CTTATTGATAGTACTAGAAACAACATATGTTTT
*
37719998 CTTATTGATAGTACTAGAAAGAACATATGTTTT
1 CTTATTGATAGTACTAGAAACAACATATGTTTT
37720031 CTT
1 CTT
37720034 TTTACTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (33 bp):
CTTATTGATAGTACTAGAAACAACATATGTTTT
Found at i:37727996 original size:40 final size:40
Alignment explanation
Indices: 37727941--37728150 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
37727931 AACATTGGAA
37727941 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37727981 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37728021 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
37728061 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
37728100 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
37728141 CTATATCCGG
1 ATATATCCGG
37728151 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:37735857 original size:40 final size:40
Alignment explanation
Indices: 37735802--37736051 Score: 385
Period size: 40 Copynumber: 6.2 Consensus size: 40
37735792 AACATTGGAA
37735802 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37735842 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37735882 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
37735922 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
37735962 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
37736001 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
37736042 CTATATCCGG
1 ATATATCCGG
37736052 TTAAATCCCG
Statistics
Matches: 191, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 189 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:37743256 original size:38 final size:38
Alignment explanation
Indices: 37743209--37743291 Score: 157
Period size: 38 Copynumber: 2.2 Consensus size: 38
37743199 TCACTTTGAG
*
37743209 TTAATAAAATTCTCTTTGAGTTTTCTTTTAGAAGAGTT
1 TTAACAAAATTCTCTTTGAGTTTTCTTTTAGAAGAGTT
37743247 TTAACAAAATTCTCTTTGAGTTTTCTTTTAGAAGAGTT
1 TTAACAAAATTCTCTTTGAGTTTTCTTTTAGAAGAGTT
37743285 TTAACAA
1 TTAACAA
37743292 TCTTTTAAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.31, C:0.10, G:0.12, T:0.47
Consensus pattern (38 bp):
TTAACAAAATTCTCTTTGAGTTTTCTTTTAGAAGAGTT
Found at i:37745537 original size:40 final size:39
Alignment explanation
Indices: 37745416--37745570 Score: 193
Period size: 39 Copynumber: 3.9 Consensus size: 39
37745406 TGTGTATGAA
*
37745416 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
37745455 TGTGTGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
37745494 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
37745534 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
37745571 GTTTGAATGA
Statistics
Matches: 100, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 59 0.59
40 41 0.41
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:37746166 original size:39 final size:39
Alignment explanation
Indices: 37746080--37746233 Score: 229
Period size: 39 Copynumber: 3.9 Consensus size: 39
37746070 TATGGTAACC
* *
37746080 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
37746120 TGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
37746159 CGTACAATTACCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
37746198 CGCACAATTGCCTTCGGGCTTAGCCCGGATAT-ACAA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
37746234 TTCACACATT
Statistics
Matches: 102, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
38 4 0.04
39 82 0.80
40 16 0.16
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:37747037 original size:25 final size:25
Alignment explanation
Indices: 37747009--37747076 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
37746999 TAGCATCGAA
*
37747009 CCAAGCTAGTGTTGGCAACCTTGAT
1 CCAAGCTAGTGTTAGCAACCTTGAT
37747034 CCAAGCTAGTGTTAGCAACCTTGAT
1 CCAAGCTAGTGTTAGCAACCTTGAT
* *
37747059 CCAAAGCAAGTGTCAGCA
1 CC-AAGCTAGTGTTAGCA
37747077 GCCTGATAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 26 0.67
26 13 0.33
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (25 bp):
CCAAGCTAGTGTTAGCAACCTTGAT
Found at i:37752112 original size:22 final size:22
Alignment explanation
Indices: 37752072--37752113 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37752062 CCTAAGGATG
*
37752072 AAATAAAATTAAAAGAAAAGAA
1 AAATAAAATTAAAAAAAAAGAA
37752094 AAATAAAA-TAAAATAAAAAG
1 AAATAAAATTAAAA-AAAAAG
37752114 TAGTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (22 bp):
AAATAAAATTAAAAAAAAAGAA
Found at i:37752140 original size:14 final size:14
Alignment explanation
Indices: 37752123--37752158 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
37752113 GTAGTTTTAA
37752123 AAAAATATAAAAAT
1 AAAAATATAAAAAT
*
37752137 AAAAACATAAAAAT
1 AAAAATATAAAAAT
37752151 AATAAATA
1 AA-AAATA
37752159 AAAGTCTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (14 bp):
AAAAATATAAAAAT
Found at i:37757935 original size:14 final size:15
Alignment explanation
Indices: 37757911--37757946 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
37757901 ACTTAAATTA
37757911 ATATCAATTAAGAAC
1 ATATCAATTAAGAAC
37757926 ATAT-AATTAAGAAC
1 ATATCAATTAAGAAC
*
37757940 AAATCAA
1 ATATCAA
37757947 ATATTTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.58, C:0.11, G:0.06, T:0.25
Consensus pattern (15 bp):
ATATCAATTAAGAAC
Found at i:37758899 original size:64 final size:64
Alignment explanation
Indices: 37758826--37758975 Score: 194
Period size: 64 Copynumber: 2.3 Consensus size: 64
37758816 AGGTAAGGAT
* * *
37758826 CACATGGGCCAGAGACAGGAGCGTGTGTCTAGGCCGTGTGACTCACTATTTGTAATTTAGAAAC
1 CACACGGGCCAGAGACAGGAGCGTGTGTCCAGGCCGTGTAACTCACTATTTGTAATTTAGAAAC
* * * *
37758890 CATACGGGCCAGAGACATGG-GCTTGTGTCCAGGCCGTGTAACTCACTGTTTGTGATTTAGAAAC
1 CACACGGGCCAGAGACA-GGAGCGTGTGTCCAGGCCGTGTAACTCACTATTTGTAATTTAGAAAC
* * *
37758954 CACACAGGCTAGAGACACGAGC
1 CACACGGGCCAGAGACAGGAGC
37758976 ATATGTCAGG
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
63 1 0.01
64 70 0.96
65 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (64 bp):
CACACGGGCCAGAGACAGGAGCGTGTGTCCAGGCCGTGTAACTCACTATTTGTAATTTAGAAAC
Found at i:37761795 original size:40 final size:40
Alignment explanation
Indices: 37761730--37761936 Score: 157
Period size: 40 Copynumber: 5.2 Consensus size: 40
37761720 CGGAATACAA
* * * *
37761730 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATAGAACAACTTGCACAAATGCCTTCAGGTCTTAGC
* * * *
37761770 CCGGATAGAACGACTTGTACAAATGCCTTCGGGTATTAGC
1 CCGGATAGAACAACTTGCACAAATGCCTTCAGGTCTTAGC
** *
37761810 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGC
1 CCGGATAGAACAACTTGCACAAATGCCTTCAGGTCTTAGC
* * * * * *
37761850 CCGGATTTAG-TC-ACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGA--TAGAACAACTTGCACAAATGCCTTCAGGTCTTAGC
** * * * * * *
37761890 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATAGAACAACTTGCACAAATGCCTTCAGGTCTTAGC
37761930 CCGGATA
1 CCGGATA
37761937 TCATTTAATT
Statistics
Matches: 132, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 128 0.97
41 1 0.01
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CCGGATAGAACAACTTGCACAAATGCCTTCAGGTCTTAGC
Found at i:37761877 original size:80 final size:81
Alignment explanation
Indices: 37761730--37761935 Score: 229
Period size: 80 Copynumber: 2.6 Consensus size: 81
37761720 CGGAATACAA
* * * * *
37761730 CCGGATATAACCACATGCACGAATGCCTTCAGGTCTTAGCCCGGA-TAGAACGACTTGTACAAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
*
37761794 GCCTTCGGGTATTAGC
66 GCCTTCGGGTATTAAC
* * *
37761810 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGCCCGGA-TTAGAACGACTAGCACAAA
*
37761873 TGCCTTCGGGTCTTAAC
65 TGCCTTCGGGTATTAAC
* * ** * * *
37761890 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGCCCGGAT
37761936 ATCATTTAAT
Statistics
Matches: 107, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 102 0.95
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (81 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCAGGTCTTAGCCCGGATTAGAACGACTAGCACAAAT
GCCTTCGGGTATTAAC
Found at i:37766881 original size:27 final size:27
Alignment explanation
Indices: 37766851--37766913 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
37766841 AATCCTCCAT
37766851 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAGTAT-ATCATAGCCTCCCA
* *
37766878 AACACACCAGTATATCATATCCTCTCA
1 AACACACCAGTATATCATAGCCTCCCA
37766905 AACACACCA
1 AACACACCA
37766914 ATAAGGCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.41, C:0.35, G:0.05, T:0.19
Consensus pattern (27 bp):
AACACACCAGTATATCATAGCCTCCCA
Found at i:37766897 original size:29 final size:27
Alignment explanation
Indices: 37766816--37766913 Score: 85
Period size: 27 Copynumber: 3.5 Consensus size: 27
37766806 AAAATATTCA
* * *
37766816 TCCCAAACACAACCGGAATATTATAAATCC
1 TCCCAAACAC-ACCAGTATA-TATATA-CC
37766846 T-CCATAACACACCAGTATA-ATATAGCC
1 TCCCA-AACACACCAGTATATATATA-CC
37766873 TCCCAAACACACCAGTATATCATAT-CC
1 TCCCAAACACACCAGTATAT-ATATACC
*
37766900 TCTCAAACACACCA
1 TCCCAAACACACCA
37766914 ATAAGGCATT
Statistics
Matches: 59, Mismatches: 5, Indels: 11
0.79 0.07 0.15
Matches are distributed among these distances:
27 36 0.61
28 3 0.05
29 14 0.24
30 6 0.10
ACGTcount: A:0.41, C:0.34, G:0.05, T:0.20
Consensus pattern (27 bp):
TCCCAAACACACCAGTATATATATACC
Found at i:37768004 original size:15 final size:14
Alignment explanation
Indices: 37767978--37768031 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
37767968 TTATATTTTA
37767978 ATTATCATAAATTCAT
1 ATTAT-ATAAATT-AT
37767994 ATTATATAAATTAT
1 ATTATATAAATTAT
*
37768008 ATT-TATATATTATT
1 ATTATATAAATTA-T
37768022 AATTATATAA
1 -ATTATATAA
37768032 TCTAAAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 8 0.24
14 6 0.18
15 10 0.30
16 9 0.27
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTATATAAATTAT
Found at i:37768169 original size:17 final size:18
Alignment explanation
Indices: 37768136--37768169 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
37768126 TTGTTCTATT
*
37768136 ATTCAACTTTTATCCTTA
1 ATTCAACTTTAATCCTTA
37768154 ATTCAA-TTTAATCCTT
1 ATTCAACTTTAATCCTT
37768170 TTTCTATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTCAACTTTAATCCTTA
Found at i:37774128 original size:23 final size:23
Alignment explanation
Indices: 37774098--37774144 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
37774088 ATACGCGGAT
37774098 TCCACCCAAACACA-CCAGAATA
1 TCCACCCAAACACAGCCAGAATA
*
37774120 TCCAGCCCAAACACAGCCGGAATA
1 TCCA-CCCAAACACAGCCAGAATA
37774144 T
1 T
37774145 TATAAATCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.18
23 10 0.45
24 8 0.36
ACGTcount: A:0.40, C:0.38, G:0.11, T:0.11
Consensus pattern (23 bp):
TCCACCCAAACACAGCCAGAATA
Found at i:37774189 original size:27 final size:27
Alignment explanation
Indices: 37774159--37774221 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
37774149 AATCCTCCAT
37774159 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAGTAT-ATCATAGCCTCCCA
* *
37774186 AACACACCAGTATATCATATCCTCTCA
1 AACACACCAGTATATCATAGCCTCCCA
37774213 AACACACCA
1 AACACACCA
37774222 ATCAGGCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 2 0.06
27 31 0.94
ACGTcount: A:0.41, C:0.35, G:0.05, T:0.19
Consensus pattern (27 bp):
AACACACCAGTATATCATAGCCTCCCA
Found at i:37774205 original size:29 final size:25
Alignment explanation
Indices: 37774145--37774221 Score: 86
Period size: 27 Copynumber: 3.0 Consensus size: 25
37774135 GCCGGAATAT
37774145 TATAA-ATCCT-CCATAACACACCAG
1 TATAATATCCTCCCA-AACACACCAG
37774169 TATAATATAGCCTCCCAAACACACCAG
1 TATAATAT--CCTCCCAAACACACCAG
*
37774196 TATATCATATCCTCTCAAACACACCA
1 TATA--ATATCCTCCCAAACACACCA
37774222 ATCAGGCATT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
24 5 0.11
25 2 0.04
27 32 0.70
28 3 0.07
29 4 0.09
ACGTcount: A:0.40, C:0.34, G:0.04, T:0.22
Consensus pattern (25 bp):
TATAATATCCTCCCAAACACACCAG
Found at i:37774796 original size:15 final size:14
Alignment explanation
Indices: 37774776--37774821 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
37774766 TATTTTTCTT
37774776 TTTATTT-CGTTTTA
1 TTTATTTAC-TTTTA
37774790 TTCTATTTACTTTTA
1 TT-TATTTACTTTTA
37774805 TTTATTTTA-TTTTA
1 TTTA-TTTACTTTTA
37774819 TTT
1 TTT
37774822 GTTTTATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 12 0.41
15 16 0.55
16 1 0.03
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (14 bp):
TTTATTTACTTTTA
Found at i:37774798 original size:19 final size:18
Alignment explanation
Indices: 37774771--37774828 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
37774761 TTGTTTATTT
*
37774771 TTCTTTTTATTTCGTTTTA
1 TTCTATTTATTT-GTTTTA
37774790 TTCTATTTACTTT-TATTTA
1 TTCTATTTA-TTTGT-TTTA
*
37774809 TTTTATTTTATTTGTTTTA
1 TTCTA-TTTATTTGTTTTA
37774828 T
1 T
37774829 ATTAATAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
18 1 0.03
19 24 0.73
20 8 0.24
ACGTcount: A:0.16, C:0.07, G:0.03, T:0.74
Consensus pattern (18 bp):
TTCTATTTATTTGTTTTA
Found at i:37775307 original size:15 final size:14
Alignment explanation
Indices: 37775281--37775334 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
37775271 TTATATTTTA
37775281 ATTATCATAAATTCAT
1 ATTAT-ATAAATT-AT
37775297 ATTATATAAATTAT
1 ATTATATAAATTAT
*
37775311 ATTTATATATCATTA-
1 A-TTATATA-AATTAT
37775326 ATTATATAA
1 ATTATATAA
37775335 TTTAAAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 10 0.29
15 15 0.44
16 9 0.26
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATAAATTAT
Found at i:37775472 original size:17 final size:18
Alignment explanation
Indices: 37775437--37775472 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
37775427 TATTGTTTTA
*
37775437 TAATTCAACTTTTATCCT
1 TAATTCAACTTTAATCCT
37775455 TAATTCAA-TTTAATCCT
1 TAATTCAACTTTAATCCT
37775472 T
1 T
37775473 TTTCTATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.31, C:0.19, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTCAACTTTAATCCT
Found at i:37786293 original size:13 final size:13
Alignment explanation
Indices: 37786275--37786302 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
37786265 ATGAGCATTC
37786275 AATTAGCAGATAA
1 AATTAGCAGATAA
37786288 AATTAGCAGATAA
1 AATTAGCAGATAA
37786301 AA
1 AA
37786303 CAATCAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (13 bp):
AATTAGCAGATAA
Found at i:37789421 original size:22 final size:21
Alignment explanation
Indices: 37789350--37789426 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
37789340 TTTTATTTAT
* *
37789350 TTTTTTTATTTTCACTTTTATC
1 TTTTTTTATTTTC-CTTTAATA
* *
37789372 TTTATTTATCTT-CTTTAAGTA
1 TTTTTTTATTTTCCTTTAA-TA
37789393 CTTTTTTTATTTTCCTTTAATA
1 -TTTTTTTATTTTCCTTTAATA
*
37789415 TTATTTTATTTT
1 TTTTTTTATTTT
37789427 TAGGTTTTAT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 5 0.11
21 12 0.27
22 22 0.49
23 6 0.13
ACGTcount: A:0.18, C:0.10, G:0.01, T:0.70
Consensus pattern (21 bp):
TTTTTTTATTTTCCTTTAATA
Found at i:37797897 original size:27 final size:27
Alignment explanation
Indices: 37797867--37797984 Score: 137
Period size: 27 Copynumber: 4.4 Consensus size: 27
37797857 CCCTCAGTTT
* *
37797867 GTAAAATGACCGTAATACTCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAAG
** * *
37797894 GTAAAATGAATGTAATGCCCTTATAAG
1 GTAAAATGACCGTAATACCCCTATAAG
* * *
37797921 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAAG
* *
37797948 GTAAAATGATCGTAATACCCCTGTAAG
1 GTAAAATGACCGTAATACCCCTATAAG
37797975 GTAAAATGAC
1 GTAAAATGAC
37797985 GATATGCCCT
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAAG
Found at i:37797925 original size:54 final size:54
Alignment explanation
Indices: 37797867--37797984 Score: 166
Period size: 54 Copynumber: 2.2 Consensus size: 54
37797857 CCCTCAGTTT
* * * *
37797867 GTAAAATGACCGTAATACTCCTATAGGGTAAAATGAAT-GTAATGCCCTTATAAG
1 GTAAAATGACCATAATACCCCTATAGGGTAAAATG-ATCGTAATACCCCTATAAG
* *
37797921 GTAAAATGACCATAATACCCCTGTAGGGTAAAATGATCGTAATACCCCTGTAAG
1 GTAAAATGACCATAATACCCCTATAGGGTAAAATGATCGTAATACCCCTATAAG
37797975 GTAAAATGAC
1 GTAAAATGAC
37797985 GATATGCCCT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
53 2 0.04
54 55 0.96
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAAAATGACCATAATACCCCTATAGGGTAAAATGATCGTAATACCCCTATAAG
Found at i:37798182 original size:26 final size:27
Alignment explanation
Indices: 37798124--37798175 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
37798114 GGAAGTATTG
37798124 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTGGCTATGCCACAATTACTGA
*
37798151 TACTGGTGGCT-TGCCACATTTACTG
1 TACTGGTGGCTATGCCACAATTACTG
37798176 TTTCTGGCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 13 0.54
27 11 0.46
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACAATTACTGA
Found at i:37798401 original size:33 final size:33
Alignment explanation
Indices: 37798364--37798459 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
37798354 GCCTACACTA
*
37798364 TTACTGTATAGGGCTAAAGCCCAGACTGTTCTG
1 TTACTGTATAGGGCTAAGGCCCAGACTGTTCTG
* *
37798397 TTACTGTATAAGGCTAAGGCCCAGACTGTACTG
1 TTACTGTATAGGGCTAAGGCCCAGACTGTTCTG
* * *
37798430 ATACTGGATAGGGCTTAGGCCCAGACTGTT
1 TTACTGTATAGGGCTAAGGCCCAGACTGTT
37798460 ACTGCATGCA
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (33 bp):
TTACTGTATAGGGCTAAGGCCCAGACTGTTCTG
Found at i:37799537 original size:63 final size:63
Alignment explanation
Indices: 37799457--37799596 Score: 208
Period size: 63 Copynumber: 2.2 Consensus size: 63
37799447 CACATAGGCC
*
37799457 AGAGACACGGGCATGTGCCCAAGCCGTGTGACTCACTTTTTTAATTTAGAAACCACGCGAGCT
1 AGAGACACGGGCATGTGCCCAAGCCGTGTGACTCACCTTTTTAATTTAGAAACCACGCGAGCT
* * ** *
37799520 AGAGACACGGGCGTGTGCCCAGGTTGTGTGACTCACCTTTTTAATTTAGAAACCATGCGAGCT
1 AGAGACACGGGCATGTGCCCAAGCCGTGTGACTCACCTTTTTAATTTAGAAACCACGCGAGCT
* *
37799583 AGAGATATGGGCAT
1 AGAGACACGGGCAT
37799597 ATGTCTAGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 68 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (63 bp):
AGAGACACGGGCATGTGCCCAAGCCGTGTGACTCACCTTTTTAATTTAGAAACCACGCGAGCT
Found at i:37799617 original size:63 final size:63
Alignment explanation
Indices: 37799457--37799617 Score: 205
Period size: 63 Copynumber: 2.6 Consensus size: 63
37799447 CACATAGGCC
* * * *
37799457 AGAGACACGGGCATGTGCCCAAGCCGTGTGACTCACTTTTTTAATTTAGAAACCACGCGAGCT
1 AGAGACACGGGCATATGCCCAGGTCGTGTGACTCACCTTTTTAATTTAGAAACCACGCGAGCT
* * * *
37799520 AGAGACACGGGCGTGTGCCCAGGTTGTGTGACTCACCTTTTTAATTTAGAAACCATGCGAGCT
1 AGAGACACGGGCATATGCCCAGGTCGTGTGACTCACCTTTTTAATTTAGAAACCACGCGAGCT
* * * * *
37799583 AGAGATATGGGCATATGTCTAGGTCGTGTAACTCA
1 AGAGACACGGGCATATGCCCAGGTCGTGTGACTCA
37799618 TTGTCTGTGA
Statistics
Matches: 84, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 84 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (63 bp):
AGAGACACGGGCATATGCCCAGGTCGTGTGACTCACCTTTTTAATTTAGAAACCACGCGAGCT
Found at i:37801662 original size:12 final size:12
Alignment explanation
Indices: 37801640--37801671 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
37801630 TTTATTCACC
37801640 TGATGATTACTAT
1 TGAT-ATTACTAT
37801653 TGATATTACTAT
1 TGATATTACTAT
37801665 TGATATT
1 TGATATT
37801672 TTAATTGATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (12 bp):
TGATATTACTAT
Found at i:37804019 original size:23 final size:23
Alignment explanation
Indices: 37803993--37804044 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
37803983 GGACTCACCA
**
37803993 CAGCTCGTTTGAACTTATTGATT
1 CAGCTCGTAAGAACTTATTGATT
* *
37804016 CAGCTCGTAAGAGCTTATTGTTT
1 CAGCTCGTAAGAACTTATTGATT
37804039 CAGCTC
1 CAGCTC
37804045 ATTGGAGCTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (23 bp):
CAGCTCGTAAGAACTTATTGATT
Found at i:37804052 original size:23 final size:23
Alignment explanation
Indices: 37804006--37804100 Score: 79
Period size: 23 Copynumber: 4.2 Consensus size: 23
37803996 CTCGTTTGAA
*
37804006 CTTATTGATTCAGCTCGTAAGAG
1 CTTATTGATTCAGCTCATAAGAG
* **
37804029 CTTATTGTTTCAGCTCATTGGAG
1 CTTATTGATTCAGCTCATAAGAG
** *
37804052 CTTACCGATTCAACTCGA-AAGAG
1 CTTATTGATTCAGCTC-ATAAGAG
*
37804075 CTTACTG-TTCAGCTCA-ATAGAG
1 CTTATTGATTCAGCTCATA-AGAG
37804097 CTTA
1 CTTA
37804101 CCATTTTTAG
Statistics
Matches: 58, Mismatches: 12, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
21 2 0.03
22 15 0.26
23 40 0.69
24 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (23 bp):
CTTATTGATTCAGCTCATAAGAG
Found at i:37804099 original size:45 final size:46
Alignment explanation
Indices: 37804012--37804154 Score: 130
Period size: 46 Copynumber: 3.0 Consensus size: 46
37804002 TGAACTTATT
* * * * *
37804012 GATTCAGCTCGTAAGAGCTTATTGTTTCAGCTCATTGGAGCTTACC
1 GATTCAACTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACC
37804058 GATTCAACTCGAAAGAGCTTACTG-TTCAGCTCAATAGAGCTTACC
1 GATTCAACTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACC
* * * *
37804103 -ATTTTTAGCTC-AATAGAGCTTACTATTTATCAGCTCAAGAGAAGCTTACC
1 GA--TTCAACTCGAA-AGAGCTTACT-GTT-TCAGCTCAATAG-AGCTTACC
37804153 GA
1 GA
37804155 CCATGACTCA
Statistics
Matches: 80, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
44 1 0.01
45 21 0.26
46 37 0.46
48 1 0.01
49 11 0.14
50 8 0.10
51 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (46 bp):
GATTCAACTCGAAAGAGCTTACTGTTTCAGCTCAATAGAGCTTACC
Found at i:37804117 original size:24 final size:25
Alignment explanation
Indices: 37804083--37804152 Score: 97
Period size: 24 Copynumber: 2.8 Consensus size: 25
37804073 AGCTTACTGT
37804083 TCAGCTCAATAGAGCTTACCATTT-
1 TCAGCTCAATAGAGCTTACCATTTA
* *
37804107 TTAGCTCAATAGAGCTTACTATTTA
1 TCAGCTCAATAGAGCTTACCATTTA
*
37804132 TCAGCTCAAGAGAAGCTTACC
1 TCAGCTCAATAG-AGCTTACC
37804153 GACCATGACT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
24 22 0.56
25 10 0.26
26 7 0.18
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (25 bp):
TCAGCTCAATAGAGCTTACCATTTA
Found at i:37806300 original size:45 final size:45
Alignment explanation
Indices: 37806236--37806326 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
37806226 CGTATCAGTA
37806236 GTGGAATACCTTGATATCTGTAGTTCTGCCAGAACGAGTCACTTG
1 GTGGAATACCTTGATATCTGTAGTTCTGCCAGAACGAGTCACTTG
37806281 GTGGAATACCTTGATATCTGTAGTTCTGCCAGAACGAGTCACTTG
1 GTGGAATACCTTGATATCTGTAGTTCTGCCAGAACGAGTCACTTG
37806326 G
1 G
37806327 GATTTCTTTC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (45 bp):
GTGGAATACCTTGATATCTGTAGTTCTGCCAGAACGAGTCACTTG
Found at i:37812353 original size:40 final size:40
Alignment explanation
Indices: 37812298--37812475 Score: 263
Period size: 40 Copynumber: 4.5 Consensus size: 40
37812288 CGGATGATAA
* *
37812298 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
37812338 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37812378 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
37812418 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
37812458 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
37812476 TACTTGGTTT
Statistics
Matches: 128, Mismatches: 8, Indels: 5
0.91 0.06 0.04
Matches are distributed among these distances:
39 17 0.13
40 110 0.86
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:37818465 original size:30 final size:30
Alignment explanation
Indices: 37818410--37818569 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
37818400 ATAGTGAATC
37818410 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
37818439 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
37818469 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
37818498 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
37818526 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
37818556 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37818570 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:37818502 original size:59 final size:57
Alignment explanation
Indices: 37818410--37818569 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
37818400 ATAGTGAATC
*
37818410 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
37818469 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
37818526 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
37818570 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:37819919 original size:48 final size:48
Alignment explanation
Indices: 37819744--37819917 Score: 240
Period size: 48 Copynumber: 3.6 Consensus size: 48
37819734 ATGAGATCCC
*
37819744 GTGTAAGACCATGTCTGGGACATGGCATCAGCTTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCTTTGATATGTGTGCTA
* * * *
37819792 GTGTAAAGACCATGTCTAGGACAAGGCATCAACTTTGATATGTATGCTA
1 GTGT-AAGACCATGTCTGGGACATGGCATCAGCTTTGATATGTGTGCTA
* *** *
37819841 GTGTAAGACCATGTCTGGGACATGGCATCGGGGATGATATGTGTACTA
1 GTGTAAGACCATGTCTGGGACATGGCATCAGCTTTGATATGTGTGCTA
*
37819889 GTGTAAGACCATGTCTGGAACATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
37819918 GGCACCAATA
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
48 67 0.61
49 43 0.39
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAGCTTTGATATGTGTGCTA
Found at i:37819944 original size:48 final size:48
Alignment explanation
Indices: 37819838--37819954 Score: 121
Period size: 48 Copynumber: 2.4 Consensus size: 48
37819828 GATATGTATG
* * * ** *
37819838 CTAGTGTAAGACCATGTCTGGGACATGGCATCGGGGATGATATGTGTA
1 CTAGTATAAGACCATGTCTGGAACATGGCATCGGGCACAATATGAGTA
*
37819886 CTAGTGTAAGACCATGTCTGGAACATGGCATC-GGCACCAATATGAG-A
1 CTAGTATAAGACCATGTCTGGAACATGGCATCGGGCA-CAATATGAGTA
* *
37819933 CTTCGTATAAGACCATATCTGG
1 C-TAGTATAAGACCATGTCTGG
37819955 TATATGGCGT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 5 0.08
48 54 0.92
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (48 bp):
CTAGTATAAGACCATGTCTGGAACATGGCATCGGGCACAATATGAGTA
Found at i:37824054 original size:37 final size:37
Alignment explanation
Indices: 37824002--37824092 Score: 155
Period size: 37 Copynumber: 2.4 Consensus size: 37
37823992 TTATTACGAA
*
37824002 GTCTTACCCGAACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
37824039 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
37824076 GTCTCACCCGGAACATA
1 GTCTTACCCGG-ACATA
37824093 TTTCCAAGTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
37 46 0.90
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:37824190 original size:48 final size:48
Alignment explanation
Indices: 37824132--37824235 Score: 199
Period size: 48 Copynumber: 2.2 Consensus size: 48
37824122 TGTTACAACA
37824132 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
*
37824180 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
37824228 TTCACATT
1 TTCACATT
37824236 CATCACATCG
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 55 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACACATACATATCACACATATAT
Found at i:37824284 original size:49 final size:49
Alignment explanation
Indices: 37824227--37824560 Score: 559
Period size: 49 Copynumber: 6.9 Consensus size: 49
37824217 CACACATATA
*
37824227 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
* * **
37824276 CTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACTT
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
37824323 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
37824372 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
37824419 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
37824468 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
*
37824517 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
37824561 CATCTCATAC
Statistics
Matches: 267, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
47 88 0.33
49 179 0.67
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (49 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACAC
Found at i:37824328 original size:96 final size:96
Alignment explanation
Indices: 37824227--37824560 Score: 578
Period size: 96 Copynumber: 3.5 Consensus size: 96
37824217 CACACATATA
* *
37824227 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
37824292 TCGGCCATTAGGCCTTATCACATATATACTT
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
37824323 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
37824388 TTGGCCATTAGGCCTTATCACATATATACTC
66 TTGGCCATTAGGCCTTATCACATATATACTC
*
37824419 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
37824484 TTGGCCATTAGGCCTTATCACATATATATACAC
66 TTGGCCATTAGGCCTTATCAC--ATATATACTC
*
37824517 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
37824561 CATCTCATAC
Statistics
Matches: 228, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
96 177 0.78
98 51 0.22
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (96 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTAGGCCTTATCACATATATACTC
Found at i:37824381 original size:145 final size:146
Alignment explanation
Indices: 37824227--37824560 Score: 566
Period size: 145 Copynumber: 2.3 Consensus size: 146
37824217 CACACATATA
*
37824227 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
**
37824292 TCGGCCATTAGGCCTTATCACA-TATATACTTTTTCACATTCATCACATTGGCCATTAGGCCTTA
66 TCGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
*
37824356 TCACATGTATATACAC
131 TCACATATATATACAC
* *
37824372 TTTCACATTCATCACATTGGCCATTAGGCCTTATCAC--ATATATACTCTTTCACATTCATCACA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
*
37824435 TTGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
66 TCGGCCATTAGGCCTTATCACA-GTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTT
37824500 ATCACATATATATACAC
130 ATCACATATATATACAC
*
37824517 TTTCACATTCATCACATTGGCCATTAGGCCGTATCACATATATA
1 TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATA
37824561 CATCTCATAC
Statistics
Matches: 177, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
143 45 0.25
145 127 0.72
147 5 0.03
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.34
Consensus pattern (146 bp):
TTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACCTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACAGTATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTA
TCACATATATATACAC
Found at i:37829801 original size:40 final size:38
Alignment explanation
Indices: 37829734--37829810 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 38
37829724 AGAGTTAAAT
* *
37829734 TTATTATTTTATCAAAACATAACAAAATAGAAAAAAAAA
1 TTATTATTTTACCAAAACATAAAAAAAT-GAAAAAAAAA
*
37829773 TTATTATTTTACCAAAACATAAAAAAAATTAAAAAAAA
1 TTATTATTTTACCAAAACAT-AAAAAAATGAAAAAAAA
37829811 TAATGACATG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 27 0.79
40 7 0.21
ACGTcount: A:0.62, C:0.08, G:0.01, T:0.29
Consensus pattern (38 bp):
TTATTATTTTACCAAAACATAAAAAAATGAAAAAAAAA
Found at i:37835157 original size:23 final size:21
Alignment explanation
Indices: 37835126--37835167 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37835116 AACTGACAAA
* *
37835126 TATTGTTA-TATTTTCTTTTT
1 TATTATTATTATTTTTTTTTT
37835146 TATTATTATTATTTTTTTTTT
1 TATTATTATTATTTTTTTTTT
37835167 T
1 T
37835168 GGTCCCTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (21 bp):
TATTATTATTATTTTTTTTTT
Found at i:37836145 original size:19 final size:19
Alignment explanation
Indices: 37836121--37836159 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37836111 TAACCTATCA
37836121 TACATATGATTTTTATATT
1 TACATATGATTTTTATATT
37836140 TACATATGATTTTTATATT
1 TACATATGATTTTTATATT
37836159 T
1 T
37836160 TGAGTTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (19 bp):
TACATATGATTTTTATATT
Found at i:37842843 original size:47 final size:45
Alignment explanation
Indices: 37842775--37842983 Score: 188
Period size: 47 Copynumber: 4.7 Consensus size: 45
37842765 ATTGTGAGCT
* *
37842775 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GCGACA-TATGAGA-CC
* *
37842821 AGTGTAAGACCATGTCTGGGACAT-GCAT--CG-CTTACGAGA-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGCGACATATGAGACC
* *
37842861 A--GTAAGACCATGTCTGGGACATGGCATCAACGTGAGATATGA-ACC
1 AGTGTAAGACCATGTCTGGGACATGGCAT---CGCGACATATGAGACC
*
37842906 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATGA-ACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCG-C--GACATATGAGACC
*
37842953 AGTGTAAGACCATGTCTGGGATATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
37842984 GCACCTTACC
Statistics
Matches: 139, Mismatches: 10, Indels: 27
0.79 0.06 0.15
Matches are distributed among these distances:
38 21 0.15
39 4 0.03
40 2 0.01
42 6 0.04
43 1 0.01
44 5 0.04
45 6 0.04
46 9 0.06
47 85 0.61
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGCGACATATGAGACC
Found at i:37848810 original size:18 final size:19
Alignment explanation
Indices: 37848773--37848810 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37848763 ATATTTGAAA
* *
37848773 GTTAAATTTAGTGAATTAT
1 GTTAAATTAAATGAATTAT
37848792 GTTAAATTAAATG-ATTAT
1 GTTAAATTAAATGAATTAT
37848810 G
1 G
37848811 GTGCCAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (19 bp):
GTTAAATTAAATGAATTAT
Found at i:37849325 original size:67 final size:67
Alignment explanation
Indices: 37849246--37849469 Score: 360
Period size: 67 Copynumber: 3.3 Consensus size: 67
37849236 TACTATGTGT
*
37849246 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCAGATGCGTGGTTCCAAGTGAA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCAGATGCGTGGTTCCAGGTGAA
37849311 GG
66 GG
* *
37849313 ACACCATGTAGACAAGAGAGTTACGGGATAGATGTAGCTAGGTCAGATGCGTGGTTCCAGGTGAA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCAGATGCGTGGTTCCAGGTGAA
37849378 GG
66 GG
* * *
37849380 ATACCATGTAGACAAGAGAGCTACGGGATATATCTAGCTAGGTC-GCATGCGTGGTTCTAGGTGA
1 ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCAG-ATGCGTGGTTCCAGGTGA
37849444 AGG
65 AGG
* *
37849447 ACACTATGTAGACAAGAGTGCTA
1 ACACCATGTAGACAAGAGAGCTA
37849470 TGAGATAAAC
Statistics
Matches: 145, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
66 1 0.01
67 144 0.99
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (67 bp):
ACACCATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCAGATGCGTGGTTCCAGGTGAA
GG
Found at i:37850623 original size:2 final size:2
Alignment explanation
Indices: 37850616--37850648 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
37850606 TCATGACATG
37850616 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
37850649 GACTAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37853403 original size:140 final size:136
Alignment explanation
Indices: 37853120--37853425 Score: 352
Period size: 140 Copynumber: 2.2 Consensus size: 136
37853110 TTGCCGATAC
* * *
37853120 CATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAGACATGT
1 CATGTCCCAGACAT-GTCTTACACTGGCACTCATATAT-CGTGCTGAAGCATGTCCCAAACATGT
* * * *
37853185 CTTACACTAGCACAATGCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTC
64 CTTACACTAGCACAATGCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGGCAATCTATGT-
37853250 GAGGCCAATG
128 -AGGCCAATG
37853260 CATGTCCCAGACATGTCTTACACTGGCACTCATAATAT-G-GCTGAAGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTGGCACTCAT-ATATCGTGCTGAAGCATGTCCCAAACATGTC
* ** *
37853323 TTACAGTAGC-CCTTGTCTGGATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCAATCAT
65 TTACACTAGCACAATG-CT-GA-GCCGATG-CATGTCCCAGACA-CGTCTTACACTGGCAATC-T
37853387 AATGT-GGCCGAA-G
124 -ATGTAGGCC-AATG
*
37853400 CATGTCTCAGACATGTCTTACACTGG
1 CATGTCCCAGACATGTCTTACACTGG
37853426 TGCACAAATC
Statistics
Matches: 145, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
136 3 0.02
137 33 0.23
138 2 0.01
139 25 0.17
140 60 0.41
141 18 0.12
142 1 0.01
143 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (136 bp):
CATGTCCCAGACATGTCTTACACTGGCACTCATATATCGTGCTGAAGCATGTCCCAAACATGTCT
TACACTAGCACAATGCTGAGCCGATGCATGTCCCAGACACGTCTTACACTGGCAATCTATGTAGG
CCAATG
Found at i:37853404 original size:47 final size:46
Alignment explanation
Indices: 37853120--37853425 Score: 207
Period size: 47 Copynumber: 6.6 Consensus size: 46
37853110 TTGCCGATAC
** * * *
37853120 CATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCAATCATA-ATGTG-GCCGAAG
* * *
37853169 CATGTCCCAGACATGTCTTACACTAGC-A-C--AATGCTTAGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCAATCATAATG--TGGCCGAAG
* * * *
37853213 CGTGTCCCAGACACGTCTTACACTGGCTATC-T-CTGTCGAGGCC-AATG
1 CATGTCCCAGACATGTCTTACACTGGCAATCATAATGT---GGCCGAA-G
* * *
37853260 CATGTCCCAGACATGTCTTACACTGGCACTCATAATATGGCTGAAG
1 CATGTCCCAGACATGTCTTACACTGGCAATCATAATGTGGCCGAAG
* * * ** ** * *
37853306 CATGTCCCAAACATGTCTTACAGTAGCCCTTGT-CTG-GATGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCAATCATAATGTG--GCCGAAG
37853352 CCATGTCCCAGACATGGTCTTACACTGGCAATCATAATGTGGCCGAAG
1 -CATGTCCCAGACAT-GTCTTACACTGGCAATCATAATGTGGCCGAAG
*
37853400 CATGTCTCAGACATGTCTTACACTGG
1 CATGTCCCAGACATGTCTTACACTGG
37853426 TGCACAAATC
Statistics
Matches: 201, Mismatches: 38, Indels: 39
0.72 0.14 0.14
Matches are distributed among these distances:
43 3 0.01
44 33 0.16
45 2 0.01
46 53 0.26
47 59 0.29
48 32 0.16
49 18 0.09
50 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCAATCATAATGTGGCCGAAG
Found at i:37860923 original size:47 final size:46
Alignment explanation
Indices: 37860677--37860944 Score: 195
Period size: 47 Copynumber: 5.7 Consensus size: 46
37860667 GGGATAAATT
* * *
37860677 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATGCG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATA-ATGTG
* * * * *
37860726 TGCTGATGCATGTCCCAGACATGTCTTACACTAGC-A-CA-ACTCTTA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAAT-GTG
* * * * ** *
37860771 GCCGATGCGTGTCCCAGACACGTCTTACATTGGCTATCTCTGTTGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-ATAATGTG
* * ** * *
37860818 GCCAATGCATGTCCCAGACATGTCTTACACTAGCCCTCGT-CTG-G
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATGTG
37860862 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTG
1 --GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATAATGTG
* * *
37860912 GCTGAAGCATGTCTCAGACATGTCTTACACTGG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGG
37860945 TGCACAAATC
Statistics
Matches: 170, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
44 31 0.18
45 4 0.02
46 22 0.13
47 58 0.34
48 32 0.19
49 16 0.09
50 7 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATAATGTG
Found at i:37860937 original size:94 final size:93
Alignment explanation
Indices: 37860676--37860942 Score: 301
Period size: 94 Copynumber: 2.9 Consensus size: 93
37860666 TGGGATAAAT
* * * *
37860676 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATGCGTGCTGATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA-ATGAG-GCTGAAGCATGTCC
*
37860741 CAGACATGTCTTACACTAGCACAACTCTTA
64 CAGACATGTCTTACACTAGCACAACTCTGA
* * * * ** *
37860771 -GCCGATG-CGTGTCCCAGACA-CGTCTTACATTGGCTATCTCTGTTGAGGC-CAATGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATC-ATAATGAGGCTGAA-GCATGTCC
**
37860832 CAGACATGTCTTACACTAGC-CCTCGTCTGGA
64 CAGACATGTCTTACACTAGCACAAC-TCT-GA
* *
37860863 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGAAGCATGTCTCA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGAGGCTGAAGCATGTCCCA
37860928 GACATGTCTTACACT
66 GACATGTCTTACACT
37860943 GGTGCACAAA
Statistics
Matches: 141, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
90 3 0.02
91 33 0.23
92 18 0.13
93 20 0.14
94 49 0.35
95 18 0.13
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (93 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGAGGCTGAAGCATGTCCCA
GACATGTCTTACACTAGCACAACTCTGA
Found at i:37862720 original size:41 final size:40
Alignment explanation
Indices: 37862668--37862773 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 40
37862658 ACGGCTTGGC
* * *
37862668 ACACGTCCGTGTCCATGGCCCGTGTCCTTCACATGGCCATG
1 ACACGCCCGTGTCC-TAGCCCGTGTCCTTCACACGGCCATG
*
37862709 ACATGCCCGTGTCTCTAGCCCGTGTCCTTCACACGGCCATG
1 ACACGCCCGTGTC-CTAGCCCGTGTCCTTCACACGGCCATG
*
37862750 ACACGCCCGTGTCCTAGACCGTGT
1 ACACGCCCGTGTCCTAGCCCGTGT
37862774 TCAAAAACAT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
40 10 0.17
41 47 0.81
42 1 0.02
ACGTcount: A:0.15, C:0.38, G:0.24, T:0.24
Consensus pattern (40 bp):
ACACGCCCGTGTCCTAGCCCGTGTCCTTCACACGGCCATG
Found at i:37863960 original size:46 final size:45
Alignment explanation
Indices: 37863817--37863960 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
37863807 ATCTCGAGGC
* *
37863817 CGATGCATATCCCAGACATGTCTTACACTAGCACTCGTCTCAA-TGC-
1 CGATGCATGTCCCAGACATGTCTTACACTAG--CTC-TCACAAGTGCT
* * * * *
37863863 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTTTCATAATGTGGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACAA-GTGCT
* *
37863911 CGATGCATGTCCCAGCCATGTCTTACACTAGCTCACACAAGTGACT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACAAGTG-CT
37863957 CGAT
1 CGAT
37863961 CGTCATGGCA
Statistics
Matches: 78, Mismatches: 14, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
45 7 0.09
46 28 0.36
47 28 0.36
48 15 0.19
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACAAGTGCT
Found at i:37884726 original size:46 final size:46
Alignment explanation
Indices: 37884668--37884889 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 46
37884658 CGGTTATAGT
* *
37884668 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
* *
37884714 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATC-GACA-ATGA-GA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGATGA
* * * * *
37884759 CGAGTGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGACGTA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATG-A
** * * *
37884809 -ATTCAGTGTAAGACATGTCTGGGACATGCACCGGCTATGA-GATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATGATGA
* *
37884854 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
37884890 ACACCTTACC
Statistics
Matches: 142, Mismatches: 21, Indels: 24
0.76 0.11 0.13
Matches are distributed among these distances:
45 3 0.02
46 67 0.47
47 45 0.32
48 25 0.18
49 1 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGA
Found at i:37884888 original size:94 final size:94
Alignment explanation
Indices: 37884670--37884889 Score: 252
Period size: 94 Copynumber: 2.3 Consensus size: 94
37884660 GTTATAGTGA
** *
37884670 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACCATGTC
* *
37884735 TGGGATATGGCATCGACAATGAGACGAGT
66 TGGGACATGGCACCGACAATGAGACGAGT
* * **
37884764 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCAAGACGTA-ATTCAGTGTAAGA-CATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACG-AGAGCCAGTGTAAGACCATGT
* * *
37884827 CTGGGACAT-GCACCGGCTATGAGATGA-T
65 CTGGGACATGGCACCGACAATGAGACGAGT
37884855 AG-TCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCG
37884890 ACACCTTACC
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
91 2 0.02
92 24 0.22
93 26 0.24
94 55 0.51
95 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGACGAGAGCCAGTGTAAGACCATGTC
TGGGACATGGCACCGACAATGAGACGAGT
Found at i:37885905 original size:14 final size:14
Alignment explanation
Indices: 37885886--37885920 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
37885876 CGTGTAATGG
37885886 ACACGGGGTCAGGT
1 ACACGGGGTCAGGT
37885900 ACACGGGGTCAGGT
1 ACACGGGGTCAGGT
37885914 ACACGGG
1 ACACGGG
37885921 CGTGTGTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.43, T:0.11
Consensus pattern (14 bp):
ACACGGGGTCAGGT
Found at i:37890148 original size:21 final size:21
Alignment explanation
Indices: 37890124--37890166 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
37890114 AGTAAGTAAG
37890124 AATGCCAGAATATATATTAGA
1 AATGCCAGAATATATATTAGA
*
37890145 AATGGCAGAATATATATTAGA
1 AATGCCAGAATATATATTAGA
37890166 A
1 A
37890167 TGTGTTAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.28
Consensus pattern (21 bp):
AATGCCAGAATATATATTAGA
Found at i:37892965 original size:19 final size:18
Alignment explanation
Indices: 37892922--37892957 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37892912 CAAAACAATA
37892922 AAAAAATTAAAAATATAT
1 AAAAAATTAAAAATATAT
* *
37892940 AAAAAATTTAAATTATAT
1 AAAAAATTAAAAATATAT
37892958 TTAAAAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAAATTAAAAATATAT
Found at i:37908907 original size:27 final size:26
Alignment explanation
Indices: 37908851--37908907 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
37908841 CAACTTTAAC
* * *
37908851 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
37908877 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
37908904 CCTA
1 CCTA
37908908 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:37918602 original size:40 final size:40
Alignment explanation
Indices: 37918547--37918681 Score: 186
Period size: 40 Copynumber: 3.4 Consensus size: 40
37918537 GATGATAACT
37918547 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37918587 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * *
37918627 GGGATATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
37918666 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
37918682 TACTTGGATT
Statistics
Matches: 86, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
38 15 0.17
39 15 0.17
40 56 0.65
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:37926695 original size:40 final size:40
Alignment explanation
Indices: 37926590--37926763 Score: 257
Period size: 40 Copynumber: 4.4 Consensus size: 40
37926580 GATGATAACT
*
37926590 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
37926630 GGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
37926669 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
37926709 GGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
37926748 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
37926764 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 15 0.12
39 53 0.43
40 56 0.45
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:37926736 original size:79 final size:79
Alignment explanation
Indices: 37926590--37926763 Score: 255
Period size: 79 Copynumber: 2.2 Consensus size: 79
37926580 GATGATAACT
* * *
37926590 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATATCCGGGCTAAGTCCGAAGGCATTTGTGC
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGAGC
37926655 GAGTTA-CTATATCC
66 GAG-TAGCTATATCC
*
37926669 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCA-TTGAG
1 GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGT-CCGAAGGCATTTGAG
37926733 CGAGTAGCTATATCC
65 CGAGTAGCTATATCC
* *
37926748 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
37926764 TACTTGGCTT
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
78 16 0.18
79 62 0.71
80 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCGAAGGCATTTGAGC
GAGTAGCTATATCC
Found at i:37928147 original size:27 final size:27
Alignment explanation
Indices: 37928112--37928317 Score: 213
Period size: 27 Copynumber: 7.7 Consensus size: 27
37928102 GTGTTACAGG
* * *
37928112 GGGTGTTTCGGTAATTTCACAAATTGA
1 GGGTATTTCAGTAATTTCACAAATCGA
* * *
37928139 AGGTATTTCAGTAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTCACAAATCGA
* * * *
37928166 AGGTATTTCAATAATTTTACAAATCAA
1 GGGTATTTCAGTAATTTCACAAATCGA
37928193 GGGTATTTC-GATAATTTCACAAATCG-
1 GGGTATTTCAG-TAATTTCACAAATCGA
** * *
37928219 GGAGTATTTTGGTAATTTTACAAATTGA
1 GG-GTATTTCAGTAATTTCACAAATCGA
37928247 GGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCAGTAATTTCACAAATCGA
*
37928273 GGGTATTTC-GATAATTTTACAAATCGA
1 GGGTATTTCAG-TAATTTCACAAATCGA
*
37928300 GGGTATTTTAGTAATTTC
1 GGGTATTTCAGTAATTTC
37928318 TCTTTATTAT
Statistics
Matches: 151, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.01
26 24 0.16
27 122 0.81
28 4 0.03
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTCACAAATCGA
Found at i:37928252 original size:81 final size:80
Alignment explanation
Indices: 37928112--37928316 Score: 252
Period size: 81 Copynumber: 2.5 Consensus size: 80
37928102 GTGTTACAGG
* * * * *
37928112 GGGTGTTTCGGTAATTTCACAAAT-TGAAGGTATTTCAGTAATTTTACAAATCAAAGGTATTTCA
1 GGGTATTTCGATAATTTCACAAATCGGGA-GTATTTTAGTAATTTTACAAATCAAAGGTATTTCA
*
37928176 ATAATTTTACAAATCAA
65 ATAATTTCAC-AATCAA
* ** * *
37928193 GGGTATTTCGATAATTTCACAAATCGGGAGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAG
1 GGGTATTTCGATAATTTCACAAATCGGGAGTATTTTAGTAATTTTACAAATCAAAGGTATTTCAA
*
37928258 TAATTTCACAATCGA
66 TAATTTCACAATCAA
*
37928273 GGGTATTTCGATAATTTTACAAATCGAGG-GTATTTTAGTAATTT
1 GGGTATTTCGATAATTTCACAAATCG-GGAGTATTTTAGTAATTT
37928317 CTCTTTATTA
Statistics
Matches: 108, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 44 0.41
81 62 0.57
82 2 0.02
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (80 bp):
GGGTATTTCGATAATTTCACAAATCGGGAGTATTTTAGTAATTTTACAAATCAAAGGTATTTCAA
TAATTTCACAATCAA
Found at i:37929863 original size:93 final size:93
Alignment explanation
Indices: 37929738--37929908 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
37929728 CCCATAAGCA
** *
37929738 AACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
37929803 GAGTTCGGATGCCTAGTTACATTTCACG
66 GAGTTCGGATGCCTAGTTACATTTCACG
37929831 AACTCGGACTCAACTCAACAAG-TTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACAAGCTT-GGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
37929895 CGAGTTCGGATGCC
65 CGAGTTCGGATGCC
37929909 CAAATATTCG
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACAAGCTTGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATTTCACG
Found at i:37929904 original size:46 final size:46
Alignment explanation
Indices: 37929729--37929904 Score: 187
Period size: 46 Copynumber: 3.8 Consensus size: 46
37929719 TGTAACCCGC
* * *
37929729 CCATAAGCAAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGACGTTCGCAT
* * * * *
37929775 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACG-TTCGCAT
* * *
37929821 ACATTTCA-CGAACTCGGACTCAACTCAACAAGTTCGGACGTTCGCAT
1 CCA--TAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
37929868 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
37929905 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 20, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 4 0.04
46 64 0.62
47 34 0.33
48 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:37932668 original size:15 final size:15
Alignment explanation
Indices: 37932640--37932687 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
37932630 AGAAAACCGA
*
37932640 ATAAAGAAATCCAAG
1 ATAAAGAAACCCAAG
** *
37932655 ATTGAGAAACCCAAA
1 ATAAAGAAACCCAAG
37932670 ATAAAGAAACCCAAG
1 ATAAAGAAACCCAAG
37932685 ATA
1 ATA
37932688 TGATACTATG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.12
Consensus pattern (15 bp):
ATAAAGAAACCCAAG
Found at i:37935625 original size:40 final size:40
Alignment explanation
Indices: 37935569--37935784 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
37935559 GGATGATAAT
* *
37935569 CGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
37935609 TGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
37935649 CGGGCTAAGTCCCGAGGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* *
37935689 CGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
* * *
37935729 CGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTACATC
* *
37935768 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
37935785 TACTTGGCTT
Statistics
Matches: 157, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 127 0.81
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACATC
Found at i:37947988 original size:19 final size:19
Alignment explanation
Indices: 37947960--37947998 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37947950 CAAGGAAGGA
*
37947960 AGAGATAAGAA-AAAGAAAG
1 AGAGAAAAGAAGAAA-AAAG
37947979 AGAGAAAAGAAGAAAAAAG
1 AGAGAAAAGAAGAAAAAAG
37947998 A
1 A
37947999 ATTCGGCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.03
Consensus pattern (19 bp):
AGAGAAAAGAAGAAAAAAG
Found at i:37950929 original size:19 final size:20
Alignment explanation
Indices: 37950887--37950930 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
37950877 CCATATTAAC
** *
37950887 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
37950907 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
37950926 ACAGT
1 ACAGT
37950931 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Done.