Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 132 of 328
Found at i:38341235 original size:39 final size:40
Alignment explanation
Indices: 38341191--38341356 Score: 174
Period size: 40 Copynumber: 4.2 Consensus size: 40
38341181 CGGAATATAA
*
38341191 CCGGATATAATCAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
38341230 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
38341270 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
38341310 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
38341349 CCGGATAT
1 CCGGATAT
38341357 CATTCAATTT
Statistics
Matches: 104, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 25 0.24
40 79 0.76
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:38342205 original size:17 final size:19
Alignment explanation
Indices: 38342182--38342227 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
38342172 AAGAAGCATG
38342182 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
38342200 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
38342218 AATCATGCTC
1 AATCATGCTC
38342228 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:38347128 original size:28 final size:27
Alignment explanation
Indices: 38347085--38347171 Score: 104
Period size: 27 Copynumber: 3.2 Consensus size: 27
38347075 GGAGGAAGCA
* *
38347085 TTCTGGTGGCTATGCCACAAATATGTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
*
38347113 TTCTGATGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * *
38347140 ATCTGGTGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
38347166 TTCTGG
1 TTCTGG
38347172 CAGTCATGCT
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.10
27 30 0.59
28 16 0.31
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:38354955 original size:27 final size:27
Alignment explanation
Indices: 38354868--38354982 Score: 133
Period size: 28 Copynumber: 4.2 Consensus size: 27
38354858 GGAGGAAGCG
*
38354868 TTCTGGTGGCTATGCCATAAATATCTGT
1 TTCTGGTGGCTATGCCA-CAATATCTGT
38354896 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCAC-AATATCTGT
* *
38354924 TTCTGGTGGCTCTACCACAATATCTGT
1 TTCTGGTGGCTATGCCACAATATCTGT
* * * * *
38354951 ATCTGGTGACTCTGTCACAATATTTG-
1 TTCTGGTGGCTATGCCACAATATCTGT
38354977 TTCTGG
1 TTCTGG
38354983 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.06
27 30 0.39
28 42 0.55
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTATGCCACAATATCTGT
Found at i:38354970 original size:55 final size:54
Alignment explanation
Indices: 38354867--38354982 Score: 135
Period size: 55 Copynumber: 2.1 Consensus size: 54
38354857 TGGAGGAAGC
* * *
38354867 GTTCTGGTGGCTATGCCATAAATATCTGTTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATACCATAAATATCTGTATCTGGTGACTATGCCAC-AATATCT
* * * * *
38354922 GTTTCTGGTGGCTCTACCA-CAATATCTGTATCTGGTGACTCTGTCACAATATTT
1 G-TTCTGGTGGCTATACCATAAATATCTGTATCTGGTGACTATGCCACAATATCT
38354976 GTTCTGG
1 GTTCTGG
38354983 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
53 6 0.12
54 7 0.13
55 24 0.46
56 15 0.29
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATACCATAAATATCTGTATCTGGTGACTATGCCACAATATCT
Found at i:38366435 original size:40 final size:40
Alignment explanation
Indices: 38366369--38366535 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
38366359 AAATTGAATG
* * *
38366369 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
38366408 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
38366448 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
38366488 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
38366528 ATATCCGG
1 ATATCCGG
38366536 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:38375404 original size:29 final size:29
Alignment explanation
Indices: 38375341--38375470 Score: 145
Period size: 29 Copynumber: 4.5 Consensus size: 29
38375331 TGACGAGATC
* *
38375341 GGCACTAACTGTGCGTGCTGG-AATATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* *
38375369 GGCACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
*
38375398 GGCACTAAGTGTGCATGCTGGAAAAATAT
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
* * ** *
38375427 GACACTATGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAAAATAT
**
38375456 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
38375471 AGCTCGGAGG
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 20 0.23
29 68 0.77
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAAAATAT
Found at i:38377650 original size:40 final size:40
Alignment explanation
Indices: 38377584--38377727 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
38377574 AAATTGAATG
* * *
38377584 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ***
38377623 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
38377663 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
* *
38377703 CTATCCGGGCTAAGACCTGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
38377728 TTTGTGCACG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 16 0.18
40 71 0.82
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:38377728 original size:40 final size:39
Alignment explanation
Indices: 38377622--38377750 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
38377612 TGCTGGAAAT
* * *
38377622 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
38377662 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* * *
38377702 TCTATCCGGGCTAAGACCTGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
38377742 TATATCCGG
1 TATATCCGG
38377751 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:38383675 original size:48 final size:48
Alignment explanation
Indices: 38383611--38383758 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
38383601 TTGATGTACA
*
38383611 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
38383659 AGATATATATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
38383707 AGCCATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
38383755 AGAT
1 AGAT
38383759 GTGTATATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:38385347 original size:40 final size:40
Alignment explanation
Indices: 38385292--38385410 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
38385282 AAGTTCAGTA
* *
38385292 TGTTATATCTGGGCTAAGTCTCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
*
38385332 TGTTATATCCAGGCTAAGTCCCGAAGAGCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
* * *
38385372 TGATGTATCCGGGCTAAGCCCCGAAG-GCATTCGTGCTGG
1 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
38385411 GACAAAATCC
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.18
40 59 0.82
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (40 bp):
TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGG
Found at i:38385726 original size:29 final size:29
Alignment explanation
Indices: 38385693--38385791 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 29
38385683 ATGATTAGAG
* *
38385693 GCACTGTGTGTGCAAATTCTTCTAACCGA
1 GCACTATGTGTGCAAATTCTTCTAAACGA
** **
38385722 GCACTATGTGTGCGAAA-TC-GATAATTGA
1 GCACTATGTGTGC-AAATTCTTCTAAACGA
* * *
38385750 GGCACTGTGTGTGCGAGTTCTTC-AAACGA
1 -GCACTATGTGTGCAAATTCTTCTAAACGA
38385779 GCACTATGTGTGC
1 GCACTATGTGTGC
38385792 GAGATCGGTC
Statistics
Matches: 53, Mismatches: 13, Indels: 9
0.71 0.17 0.12
Matches are distributed among these distances:
28 18 0.34
29 32 0.60
30 3 0.06
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.29
Consensus pattern (29 bp):
GCACTATGTGTGCAAATTCTTCTAAACGA
Found at i:38385758 original size:58 final size:57
Alignment explanation
Indices: 38385690--38385798 Score: 173
Period size: 57 Copynumber: 1.9 Consensus size: 57
38385680 TGAATGATTA
*
38385690 GAGGCACTGTGTGTGCAAATTCTTCTAACCGAGCACTATGTGTGCGAAATCGATAATT
1 GAGGCACTGTGTGTGCAAATTCTTC-AAACGAGCACTATGTGTGCGAAATCGATAATT
* * *
38385748 GAGGCACTGTGTGTGCGAGTTCTTCAAACGAGCACTATGTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAAACGAGCACTATGTGTGCGAAATCG
38385799 GTCAGTGGGC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 24 0.51
58 23 0.49
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAAACGAGCACTATGTGTGCGAAATCGATAATT
Found at i:38386927 original size:27 final size:27
Alignment explanation
Indices: 38386895--38387233 Score: 210
Period size: 27 Copynumber: 12.7 Consensus size: 27
38386885 CTCAATTTGT
*
38386895 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38386922 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
38386949 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38386976 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ****
38387003 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
**
38387030 AAAATTACCATTTTACCCTC-AGTTTAC
1 AAAATTACCAAATTACCCTCGA-TTTAC
** *
38387057 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * * **
38387083 GAAATTACTAAAATA-CCTCCAGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
38387109 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38387135 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
*
38387162 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
38387189 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
38387216 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
38387234 CTGCAGGGTA
Statistics
Matches: 259, Mismatches: 40, Indels: 26
0.80 0.12 0.08
Matches are distributed among these distances:
25 5 0.02
26 51 0.20
27 198 0.76
28 5 0.02
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:38386953 original size:54 final size:54
Alignment explanation
Indices: 38386908--38387080 Score: 267
Period size: 54 Copynumber: 3.2 Consensus size: 54
38386898 ATTACCAAAG
* *
38386908 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * **
38386962 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
38387016 TACCCTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCATTT
38387070 TACCCTCGATT
1 TACCCTCGATT
38387081 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
53 1 0.01
54 106 0.99
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:38386998 original size:81 final size:81
Alignment explanation
Indices: 38386908--38387080 Score: 294
Period size: 81 Copynumber: 2.1 Consensus size: 81
38386898 ATTACCAAAG
38386908 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-GAT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAG-T
* *
38386972 TTATAGAATTACCATTT
65 TTACAAAATTACCATTT
* *
38386989 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
38387054 TACAAAATTACCATTT
66 TACAAAATTACCATTT
38387070 TACCCTCGATT
1 TACCCTCGATT
38387081 ATGAAATTAC
Statistics
Matches: 87, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
81 86 0.99
82 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCAGTT
TACAAAATTACCATTT
Found at i:38387248 original size:27 final size:27
Alignment explanation
Indices: 38387218--38387528 Score: 365
Period size: 27 Copynumber: 11.3 Consensus size: 27
38387208 CGATCAATAA
* *
38387218 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
38387245 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
38387272 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
38387299 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
38387326 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
38387353 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 -AAT-------TACCGAAATACCCCTGTAGGGTAG
* *
38387388 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
38387415 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
38387442 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
38387469 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
38387496 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
38387522 AATTACC
1 AATTACC
38387529 ATTTTGCCCT
Statistics
Matches: 249, Mismatches: 26, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
26 18 0.07
27 202 0.81
28 3 0.01
34 3 0.01
35 23 0.09
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:38387249 original size:54 final size:53
Alignment explanation
Indices: 38387191--38387366 Score: 167
Period size: 54 Copynumber: 3.3 Consensus size: 53
38387181 CAGTTTGCAA
*
38387191 AATTACTGAAATACCCTCGATCA-ATAAAATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCGAAATACCCTCG-T-AGATAAAATTACCAAAATACCCCTGCAGGGTAG
* * * * *
38387245 AATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTCGTA-GATAAAATTACCAAAATACCCCTGCAGGGTAG
* * * * * *
38387299 AATTATCGCAATACCC-CTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTC-GTA-GATAAAATTACCAAAATACCCCTGCAGGGTAG
* *
38387353 AAATACAGAAATAC
1 AATTACCGAAATAC
38387367 AGAAATACCC
Statistics
Matches: 106, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
52 1 0.01
53 1 0.01
54 104 0.98
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (53 bp):
AATTACCGAAATACCCTCGTAGATAAAATTACCAAAATACCCCTGCAGGGTAG
Found at i:38387413 original size:143 final size:143
Alignment explanation
Indices: 38387226--38387493 Score: 430
Period size: 143 Copynumber: 1.9 Consensus size: 143
38387216 AAAATTACCA
*
38387226 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
** * * *
38387291 TAGGGTAGAATTA-TCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
66 TAGGGTAGAATTACT-AAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAA
38387355 ATACAGAAATACAG
130 ATACAGAAATACAG
* * *
38387369 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
*
38387434 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGT
66 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGT
38387494 GGAATTACCA
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
143 113 0.99
144 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (143 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAA
TACAGAAATACAG
Found at i:38387455 original size:89 final size:89
Alignment explanation
Indices: 38387270--38387443 Score: 330
Period size: 89 Copynumber: 2.0 Consensus size: 89
38387260 CTTGTAGGGT
* *
38387270 AGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
38387335 AATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAAATAC
38387359 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
38387424 AATACCCCTGTAGGGTAGAA
66 AATACCCCTGTAGGGTAGAA
38387444 TTACTAAAAT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 83 1.00
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.22
Consensus pattern (89 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAAATAC
Found at i:38387482 original size:116 final size:116
Alignment explanation
Indices: 38387243--38387470 Score: 357
Period size: 116 Copynumber: 2.0 Consensus size: 116
38387233 CCTGCAGGGT
* * * * *
38387243 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCGC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
* * *
38387308 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
* *
38387359 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
38387424 AATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
38387471 TTACTAAAAT
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 101 1.00
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23
Consensus pattern (116 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATAC
Found at i:38388006 original size:22 final size:22
Alignment explanation
Indices: 38387954--38388018 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
38387944 TTAAAGCCTT
* *
38387954 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
38387976 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
38387998 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
38388019 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:38388206 original size:27 final size:27
Alignment explanation
Indices: 38388176--38388277 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
38388166 ATTCTGTTAA
* *
38388176 GTGGCTTTGCCACATTATATGTTTCTG
1 GTGGCTCTGCCACAATATATGTTTCTG
* *
38388203 GTGGCTATGCCACAA-ATATCTGTTCTG
1 GTGGCTCTGCCACAATATATGT-TTCTG
* *
38388230 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATATGTTTCTG
* *
38388257 GTGACTCTGTCACAATATATG
1 GTGGCTCTGCCACAATATATG
38388278 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.86
28 4 0.06
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATATGTTTCTG
Found at i:38388443 original size:6 final size:6
Alignment explanation
Indices: 38388434--38388593 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
38388424 CTGTCACGTA
* *
38388434 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* *
38388482 ATTCTG -TTACTG ATTCTG ATTCT- ATTCT- ATCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
38388530 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCT- ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
38388577 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
38388594 CATTTTGGTT
Statistics
Matches: 131, Mismatches: 9, Indels: 28
0.78 0.05 0.17
Matches are distributed among these distances:
5 21 0.16
6 99 0.76
7 8 0.06
8 3 0.02
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:38388473 original size:30 final size:30
Alignment explanation
Indices: 38388409--38388593 Score: 215
Period size: 30 Copynumber: 6.4 Consensus size: 30
38388399 TTGCATTCAC
* * *
38388409 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATACTG
38388440 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
38388470 ATTCTGATTCTGATTCTG----T--TACTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* * *
38388494 ATTCTGATTCT-ATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATACTG
*
38388524 ATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
* *
38388554 ATTCT-ATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATACTG
38388583 ATTCTGATTCT
1 ATTCTGATTCT
38388594 CATTTTGGTT
Statistics
Matches: 133, Mismatches: 12, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
23 5 0.04
24 16 0.12
26 1 0.01
28 1 0.01
29 26 0.20
30 57 0.43
31 27 0.20
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:38390624 original size:27 final size:27
Alignment explanation
Indices: 38390592--38390929 Score: 217
Period size: 27 Copynumber: 12.7 Consensus size: 27
38390582 CTCAATTTGT
*
38390592 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38390619 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
38390646 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38390673 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ****
38390700 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
**
38390727 AAAATTACCATTTTACCCTC-ATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
** *
38390753 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * * **
38390779 GAAATTACTAAAATA-CCTCCAGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
38390805 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38390831 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
*
38390858 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
38390885 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
38390912 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
38390930 CTGCAGGGTA
Statistics
Matches: 259, Mismatches: 40, Indels: 24
0.80 0.12 0.07
Matches are distributed among these distances:
25 5 0.02
26 76 0.29
27 174 0.67
28 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:38390650 original size:54 final size:54
Alignment explanation
Indices: 38390605--38390776 Score: 274
Period size: 54 Copynumber: 3.2 Consensus size: 54
38390595 ATTACCAAAG
* *
38390605 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * **
38390659 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
*
38390713 TACCCTCGATTTACAAAATTACCATTTTACCCTC-ATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
38390766 TACCCTCGATT
1 TACCCTCGATT
38390777 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 27 0.25
54 80 0.75
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:38390695 original size:81 final size:80
Alignment explanation
Indices: 38390605--38390776 Score: 299
Period size: 81 Copynumber: 2.1 Consensus size: 80
38390595 ATTACCAAAG
38390605 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTC-ATT
* *
38390670 TATAGAATTACCATTT
65 TACAAAATTACCATTT
* *
38390686 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACCATTTTACCCTCATTT
1 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCATTT
38390751 ACAAAATTACCATTT
66 ACAAAATTACCATTT
38390766 TACCCTCGATT
1 TACCCTCGATT
38390777 ATGAAATTAC
Statistics
Matches: 87, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
80 28 0.32
81 59 0.68
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTTTACCCTCATTT
ACAAAATTACCATTT
Found at i:38390944 original size:27 final size:27
Alignment explanation
Indices: 38390914--38391198 Score: 320
Period size: 27 Copynumber: 10.3 Consensus size: 27
38390904 CGATCAATAA
*
38390914 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
38390941 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38390968 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38390995 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38391022 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 AATTAC-------CA-AAATACCCCTGTAGGGTAG
* **
38391057 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38391084 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
38391111 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
38391138 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
38391165 AATTACCAAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
38391191 AATTACCA
1 AATTACCA
38391199 TTTTGCCCTT
Statistics
Matches: 225, Mismatches: 25, Indels: 17
0.84 0.09 0.06
Matches are distributed among these distances:
26 17 0.08
27 183 0.81
28 1 0.00
34 1 0.00
35 23 0.10
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:38391072 original size:62 final size:62
Alignment explanation
Indices: 38390966--38391139 Score: 211
Period size: 62 Copynumber: 2.9 Consensus size: 62
38390956 CTTGTAGGGT
* *
38390966 AGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
* *
38391028 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAG-AAT--
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
* ** * *
38391087 -----TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
38391140 TTACTAAAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
54 44 0.44
55 1 0.01
61 3 0.03
62 52 0.52
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (62 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
Found at i:38391099 original size:89 final size:89
Alignment explanation
Indices: 38390939--38391179 Score: 311
Period size: 89 Copynumber: 2.8 Consensus size: 89
38390929 CCTGCAGGGT
* * *
38390939 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
38391004 AATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAAATAC
* *
38391028 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
38391093 AATACCCCTGTAGGGTAGAATTAC
66 AATACCCCTGTAGGGTAGAAATAC
* * ** *
38391117 -----T--A-AAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTACC-A
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
38391173 AGATACC
66 A-ATACC
38391180 TTGTGGGGTA
Statistics
Matches: 138, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
80 2 0.01
81 51 0.37
82 1 0.01
84 1 0.01
89 83 0.60
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (89 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAAATAC
Found at i:38391151 original size:116 final size:116
Alignment explanation
Indices: 38390922--38391139 Score: 364
Period size: 116 Copynumber: 1.9 Consensus size: 116
38390912 AAAATTACCA
*
38390922 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
* * *
38390987 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACAGAAATACAG
66 TAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATACAGAAATACAG
* * *
38391038 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
*
38391103 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 TAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
38391140 TTACTAAAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 94 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (116 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATACAGAAATACAG
Found at i:38391675 original size:22 final size:22
Alignment explanation
Indices: 38391623--38391687 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
38391613 TTAAAGCCTT
* *
38391623 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
38391645 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
38391667 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
38391688 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:38391875 original size:27 final size:27
Alignment explanation
Indices: 38391845--38391946 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
38391835 ATTCTGTTAA
* *
38391845 GTGGCTTTGCCACATTATATGTTTCTG
1 GTGGCTCTGCCACAATATATGTTTCTG
* *
38391872 GTGGCTATGCCACAA-ATATCTGTTCTG
1 GTGGCTCTGCCACAATATATGT-TTCTG
* *
38391899 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATATGTTTCTG
* *
38391926 GTGACTCTGTCACAATATATG
1 GTGGCTCTGCCACAATATATG
38391947 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.86
28 4 0.06
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATATGTTTCTG
Found at i:38392112 original size:6 final size:6
Alignment explanation
Indices: 38392103--38392239 Score: 151
Period size: 6 Copynumber: 22.8 Consensus size: 6
38392093 CTGTCACGTA
38392103 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCT-
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
38392150 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
38392199 ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
38392240 CATTTTGGTT
Statistics
Matches: 113, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
5 13 0.12
6 91 0.81
7 7 0.06
8 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:38392142 original size:30 final size:30
Alignment explanation
Indices: 38392106--38392239 Score: 176
Period size: 30 Copynumber: 4.7 Consensus size: 30
38392096 TCACGTAATT
38392106 CTGATTCTGATTCTGATTCTGATTCTGTTA
1 CTGATTCTGATTCTGATTCTGATTCTGTTA
38392136 CTGATTCTGATTCT-ATTCTG--TC----A
1 CTGATTCTGATTCTGATTCTGATTCTGTTA
*
38392159 CCTAATTCTGATTCTGATTCTGATTCTGTTA
1 -CTGATTCTGATTCTGATTCTGATTCTGTTA
*
38392190 CTAATAT-TGATTCTGATTCTGATTCTGTTA
1 CTGAT-TCTGATTCTGATTCTGATTCTGTTA
38392220 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
38392240 CATTTTGGTT
Statistics
Matches: 92, Mismatches: 2, Indels: 20
0.81 0.02 0.18
Matches are distributed among these distances:
23 1 0.01
24 13 0.14
25 6 0.07
27 4 0.04
29 7 0.08
30 59 0.64
31 2 0.02
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
CTGATTCTGATTCTGATTCTGATTCTGTTA
Found at i:38392172 original size:60 final size:61
Alignment explanation
Indices: 38392078--38392239 Score: 231
Period size: 60 Copynumber: 2.7 Consensus size: 61
38392068 TTGCATTCAC
* * **
38392078 ATTCTGGTTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGATT-CTGTTACTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TTACTAATACTG
*
38392139 ATTCTGATTCT-ATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTG
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTG
* *
38392199 ATTCTGATTCTGATTCTGTTA-CTGATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCT
38392240 CATTTTGGTT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
59 2 0.02
60 72 0.78
61 18 0.20
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (61 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTG
Found at i:38392257 original size:30 final size:29
Alignment explanation
Indices: 38392078--38392260 Score: 158
Period size: 30 Copynumber: 6.1 Consensus size: 29
38392068 TTGCATTCAC
*
38392078 ATTCTGGTTCTGATTCTG-TCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTC-C--AATTCTG
**
38392109 ATTCTGATTCTGATTCTGATT-CTGTTACTG
1 ATTCTGATTCTGATTCTG-TTCCAATT-CTG
*
38392139 ATTCTGATTCT-ATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGT-TCC-AATTCTG
*
38392169 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTT-CCAAT-TCTG
**
38392199 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTT-CCAATTCTG
* *
38392229 ATTCTGATTCTCATTTTGGTTCCAATTCTG
1 ATTCTGATTCTGATTCT-GTTCCAATTCTG
38392259 AT
1 AT
38392261 AATGTTTCTT
Statistics
Matches: 128, Mismatches: 13, Indels: 23
0.78 0.08 0.14
Matches are distributed among these distances:
28 1 0.01
29 9 0.07
30 85 0.66
31 32 0.25
33 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.49
Consensus pattern (29 bp):
ATTCTGATTCTGATTCTGTTCCAATTCTG
Found at i:38394268 original size:27 final size:27
Alignment explanation
Indices: 38394236--38394574 Score: 217
Period size: 27 Copynumber: 12.7 Consensus size: 27
38394226 CTCAATTTGT
*
38394236 AAAATTACCAAAGTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38394263 AGAATTACC-GTTTCACCCTCGATTTAC
1 AAAATTACCAAATT-ACCCTCGATTTAC
** *
38394290 AAAATTACCATTTTACCCTCGATTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38394317 AGAATTACCATTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
* ****
38394344 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
** *
38394371 AAAATTACCATTTTACCCTCAATTTAC
1 AAAATTACCAAATTACCCTCGATTTAC
** *
38394398 AAAATTACCATTTTACCCTCGA-TTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* * * * * **
38394424 GAAATTACTAAAATA-CCTCCAGTTGT
1 AAAATTACCAAATTACCCTCGATTTAC
* * *
38394450 AAAATTACCAAAGTACCC-CGGTTTAT
1 AAAATTACCAAATTACCCTCGATTTAC
* **
38394476 AAAATTACCCAAA-TATCCTCGATTTGT
1 AAAATTA-CCAAATTACCCTCGATTTAC
*
38394503 AAAATTACCGAAA-TACCCTC-AGTTTGC
1 AAAATTACC-AAATTACCCTCGA-TTTAC
* ** *
38394530 AAAATTACTGAAA-TACCCTCGATCAAT
1 AAAATTAC-CAAATTACCCTCGATTTAC
*
38394557 AAAATTACCAAAATACCC
1 AAAATTACCAAATTACCC
38394575 CTGCAGGGTA
Statistics
Matches: 259, Mismatches: 42, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
25 5 0.02
26 50 0.19
27 200 0.77
28 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAATTACCCTCGATTTAC
Found at i:38394294 original size:54 final size:54
Alignment explanation
Indices: 38394249--38394421 Score: 274
Period size: 54 Copynumber: 3.2 Consensus size: 54
38394239 ATTACCAAAG
* *
38394249 TACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* * **
38394303 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
* *
38394357 TACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
38394411 TACCCTCGATT
1 TACCCTCGATT
38394422 ATGAAATTAC
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 107 1.00
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTT
Found at i:38394339 original size:81 final size:81
Alignment explanation
Indices: 38394225--38394421 Score: 304
Period size: 81 Copynumber: 2.4 Consensus size: 81
38394215 ACTAAAATGT
** ***
38394225 CCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
1 CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
38394290 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
* * * * *
38394306 CCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAC
1 CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
38394371 AAAATTACCATTTTAC
66 AAAATTACCATTTTAC
38394387 CCTCAATTTACAAAATTACCATTTTACCCTCGATT
1 CCTCAATTTACAAAATTACCATTTTACCCTCGATT
38394422 ATGAAATTAC
Statistics
Matches: 105, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (81 bp):
CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTCACCCTCGATTTAC
AAAATTACCATTTTAC
Found at i:38394589 original size:27 final size:27
Alignment explanation
Indices: 38394559--38394842 Score: 311
Period size: 27 Copynumber: 10.3 Consensus size: 27
38394549 CGATCAATAA
*
38394559 AATTACCAAAATACCCCTGCAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
38394586 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38394613 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38394640 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38394667 AAATACAGAAATACAGAAATACCCCTGTAGGGTAG
1 AATTAC-------CA-AAATACCCCTGTAGGGTAG
* **
38394702 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
38394729 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
38394756 AATTACTAAAATACCCCTATAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
38394783 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * *
38394810 AATTA-CAAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
38394835 AATTACCA
1 AATTACCA
38394843 TTTTGCCCTT
Statistics
Matches: 223, Mismatches: 25, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
25 14 0.06
26 7 0.03
27 177 0.79
28 1 0.00
34 1 0.00
35 23 0.10
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:38394717 original size:62 final size:62
Alignment explanation
Indices: 38394611--38394784 Score: 211
Period size: 62 Copynumber: 2.9 Consensus size: 62
38394601 CTTGTAGGGT
* *
38394611 AGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
* *
38394673 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAG-AAT--
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
* ** * *
38394732 -----TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAA
38394785 TTACTAAAAT
Statistics
Matches: 100, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
54 44 0.44
55 1 0.01
61 3 0.03
62 52 0.52
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (62 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATAC
Found at i:38394744 original size:89 final size:89
Alignment explanation
Indices: 38394584--38394815 Score: 309
Period size: 89 Copynumber: 2.7 Consensus size: 89
38394574 CCTGCAGGGT
* * *
38394584 AGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
38394649 AATACCCCTGTAGGGTAGAAATAC
66 AATACCCCTGTAGGGTAGAAATAC
* *
38394673 AGAAATACAGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGA
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
*
38394738 AATACCCCTGTAGGGTAGAATTAC
66 AATACCCCTGTAGGGTAGAAATAC
* * ** *
38394762 -----T--A-AAATACCCCTATAAGGTAGAATTACTAAAATACCCCTGTAGGGTGGAATTAC
1 AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTAC
38394816 AAGATACCTT
Statistics
Matches: 130, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
81 45 0.35
82 1 0.01
84 1 0.01
89 83 0.64
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (89 bp):
AGAAATACAGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCCTGTAGGGTAGAAATAC
Found at i:38394796 original size:116 final size:116
Alignment explanation
Indices: 38394567--38394784 Score: 364
Period size: 116 Copynumber: 1.9 Consensus size: 116
38394557 AAAATTACCA
*
38394567 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
* * *
38394632 TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACAGAAATACAG
66 TAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATACAGAAATACAG
* * *
38394683 AAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
*
38394748 TAGGGTAGAATTACTAAAATACCCCTATAAGGTAGAA
66 TAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAA
38394785 TTACTAAAAT
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
116 94 1.00
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.22
Consensus pattern (116 bp):
AAATACCCCTGCAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAATTACCAAAATACCCCTATAAGGTAGAAATACAGAAATACAG
Found at i:38395319 original size:22 final size:22
Alignment explanation
Indices: 38395267--38395331 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
38395257 TTAAAGCCTT
* *
38395267 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
38395289 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
38395311 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
38395332 AAGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:38395519 original size:27 final size:27
Alignment explanation
Indices: 38395489--38395590 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
38395479 ATTCTGTTAA
* *
38395489 GTGGCTTTGCCACATTATATGTTTCTG
1 GTGGCTCTGCCACAATATATGTTTCTG
* *
38395516 GTGGCTATGCCACAA-ATATCTGTTCTG
1 GTGGCTCTGCCACAATATATGT-TTCTG
* *
38395543 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATATGTTTCTG
* *
38395570 GTGACTCTGTCACAATATATG
1 GTGGCTCTGCCACAATATATG
38395591 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 5 0.08
27 54 0.86
28 4 0.06
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATATGTTTCTG
Found at i:38395756 original size:6 final size:6
Alignment explanation
Indices: 38395747--38395908 Score: 156
Period size: 6 Copynumber: 26.8 Consensus size: 6
38395737 CTGTCACGTA
* *
38395747 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG
* * *
38395795 ATTCTG -TTACTG ATTCTG ATTCTT ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
38395844 ATTCTG ATTCTG -TTACTA ATAT-TG ATTCTT ATTCTG ATTCTG -TTACTG
1 ATTCTG ATTCTG ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG
38395892 ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCT
38395909 CATTTTGGTT
Statistics
Matches: 129, Mismatches: 14, Indels: 26
0.76 0.08 0.15
Matches are distributed among these distances:
5 10 0.08
6 109 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:38395870 original size:85 final size:85
Alignment explanation
Indices: 38395722--38395908 Score: 329
Period size: 85 Copynumber: 2.2 Consensus size: 85
38395712 TTGCATTCAC
* *
38395722 ATTCTGGTTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
38395787 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
* *
38395807 ATTCTGATTCTTATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
38395872 TTATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
38395892 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
38395909 CATTTTGGTT
Statistics
Matches: 96, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
85 96 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGTTACTG
Found at i:38395929 original size:30 final size:30
Alignment explanation
Indices: 38395722--38395908 Score: 235
Period size: 30 Copynumber: 6.4 Consensus size: 30
38395712 TTGCATTCAC
* *
38395722 ATTCTGGTTCTGATTCTGTCACGTAATTCTG
1 ATTCTGATTCTGATTCTGTTAC-TAATTCTG
*
38395753 ATTCTGATTCTGATTCTGTTACTAATACTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
38395783 ATTCTGATTCTGATTCTG-T--T-A--CTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* *
38395807 ATTCTGATTCTTATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
38395838 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
38395868 ATTCTTATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
38395898 ATTCTGATTCT
1 ATTCTGATTCT
38395909 CATTTTGGTT
Statistics
Matches: 137, Mismatches: 10, Indels: 19
0.83 0.06 0.11
Matches are distributed among these distances:
24 20 0.15
26 1 0.01
27 1 0.01
28 1 0.01
29 3 0.02
30 68 0.50
31 43 0.31
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:38399313 original size:48 final size:48
Alignment explanation
Indices: 38399249--38399396 Score: 224
Period size: 48 Copynumber: 3.1 Consensus size: 48
38399239 TTGATGTACA
*
38399249 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTAAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
38399297 AGATATATATATGTGGTAAAGCCGAAAGGCTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
** ** * *
38399345 AGCCATGCATATGTGGTAAAGCCAAATGGTTAATGTGAAATATGTATG
1 AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
38399393 AGAT
1 AGAT
38399397 GTGTATATAT
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 89 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (48 bp):
AGATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:38406071 original size:80 final size:80
Alignment explanation
Indices: 38405987--38406135 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
38405977 TATGGTAACC
* * * *
38405987 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
38406051 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
38406067 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
38406132 CCGG
66 CCGG
38406136 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:38406077 original size:40 final size:38
Alignment explanation
Indices: 38406028--38406135 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
38406018 ATCACGATTT
*
38406028 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
38406068 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
38406108 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
38406136 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:38408711 original size:29 final size:29
Alignment explanation
Indices: 38408678--38408838 Score: 178
Period size: 29 Copynumber: 5.6 Consensus size: 29
38408668 GTGACGAGAT
*
38408678 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
38408707 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
38408736 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* * **
38408765 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
* ** * * ***
38408794 CGGCACTGGGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAAAATA
*
38408823 TGGCACTATGTGTGCG
1 TGGCACTAAGTGTGCG
38408839 GGCTTAAATT
Statistics
Matches: 115, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 115 1.00
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAAAATA
Found at i:38414463 original size:151 final size:150
Alignment explanation
Indices: 38414184--38414484 Score: 530
Period size: 151 Copynumber: 2.0 Consensus size: 150
38414174 CTTTTCTCCT
* *
38414184 CCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCATTCAAACACTTTTCAAACACC
1 CCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCAATCAAAAACTTTTCAAACACC
*
38414249 TCAATTTAGGTCAATTTGGATACTTCCACGACACATAGAAAAATAAAATGCTTTTATGAACTGCT
66 TCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGAACTGCT
38414314 GAGCCTTGAACCTTATACCC
131 GAGCCTTGAACCTTATACCC
38414334 CCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCTAATCAAAAACTTTTCAAACAC
1 CCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACC-AATCAAAAACTTTTCAAACAC
* * * *
38414399 CTCAATTTAGGTCAATTTGGATACTCCCATGACACATAGAAAAATATAATGCTTTTGTGCACTGC
65 CTCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGAACTGC
38414464 TGAGCCTTGAACCTTATACCC
130 TGAGCCTTGAACCTTATACCC
38414485 AAGAACACTC
Statistics
Matches: 143, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
150 43 0.30
151 100 0.70
ACGTcount: A:0.34, C:0.30, G:0.08, T:0.28
Consensus pattern (150 bp):
CCAACACTCCTAAAATCACTCCACCATTATCTCCTCAACCACCAATCAAAAACTTTTCAAACACC
TCAATTTAGGTCAATTTGGATACTCCCACGACACATAGAAAAATAAAATGCTTTTATGAACTGCT
GAGCCTTGAACCTTATACCC
Found at i:38427684 original size:33 final size:33
Alignment explanation
Indices: 38427642--38427710 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
38427632 AAACATGTAG
38427642 AACCCTCAAAATAGTTATAATGTTCTTAACTTT
1 AACCCTCAAAATAGTTATAATGTTCTTAACTTT
38427675 AACCCTCAAAATAGTTATAATGTTCTTAACTTT
1 AACCCTCAAAATAGTTATAATGTTCTTAACTTT
38427708 AAC
1 AAC
38427711 TTACATATAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (33 bp):
AACCCTCAAAATAGTTATAATGTTCTTAACTTT
Found at i:38431365 original size:18 final size:18
Alignment explanation
Indices: 38431342--38431377 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
38431332 TTTTGTCCTA
38431342 GGCATCGAAGCGGATGAT
1 GGCATCGAAGCGGATGAT
*
38431360 GGCATCGAAGTGGATGAT
1 GGCATCGAAGCGGATGAT
38431378 TCCCAGAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.14, G:0.39, T:0.19
Consensus pattern (18 bp):
GGCATCGAAGCGGATGAT
Found at i:38433478 original size:21 final size:21
Alignment explanation
Indices: 38433454--38433493 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
38433444 ATAGATCCTG
* *
38433454 AATCAGTTTTACCAGATTCCC
1 AATCACTTTTACCAAATTCCC
*
38433475 AATCTCTTTTACCAAATTC
1 AATCACTTTTACCAAATTC
38433494 AGACCCAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.28, G:0.05, T:0.38
Consensus pattern (21 bp):
AATCACTTTTACCAAATTCCC
Found at i:38436046 original size:21 final size:20
Alignment explanation
Indices: 38436012--38436050 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
38436002 CCCTTGAAAC
*
38436012 AGGGCACACGCCCGTGTGGA
1 AGGGCACACACCCGTGTGGA
38436032 AGGGCAACACACCCGTGTG
1 AGGGC-ACACACCCGTGTG
38436051 ATTGCTAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.31, G:0.36, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCGTGTGGA
Found at i:38437458 original size:48 final size:46
Alignment explanation
Indices: 38437397--38437519 Score: 167
Period size: 48 Copynumber: 2.6 Consensus size: 46
38437387 GTCTCAATGT
*
38437397 CGATGCATATCCCAGACATGTCTTACACTGGCAT-AAATATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TCAAATAT-T-GAGGC
** *
38437445 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATTGTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCAAATATTGAGGC
*
38437491 CAATGCATGTCCCAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
38437520 AGCACTCATA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
46 32 0.46
47 2 0.03
48 35 0.51
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCAAATATTGAGGC
Found at i:38437514 original size:46 final size:48
Alignment explanation
Indices: 38437399--38437531 Score: 173
Period size: 46 Copynumber: 2.8 Consensus size: 48
38437389 CTCAATGTCG
* ** *
38437399 ATGCATATCCCAGACATGTCTTACACTGGCAT-AAATATCTCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-TCTCATATCTCGAGGCCA
*
38437447 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAT-T-GTGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCGAGGCCA
* *
38437493 ATGCATGTCCCAGACATGTCTTACACTAGCACTCATATC
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATC
38437532 ACCCAATATT
Statistics
Matches: 76, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 41 0.54
47 2 0.03
48 33 0.43
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATATCTCGAGGCCA
Found at i:38440909 original size:46 final size:44
Alignment explanation
Indices: 38440818--38440943 Score: 119
Period size: 46 Copynumber: 2.8 Consensus size: 44
38440808 CAGGTTATTG
* * * * *
38440818 TGAGCTAGTGTAAGACATGTCTAGGAAATGTATCAGCTTCGAGA
1 TGAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGA
**
38440862 TGTAAGCCAGTGTAAGACATGTCT-GTGACATGCATTGGCTACAAGA
1 TG--AGCCAGTGTAAGACATGTCTAG-GACATGCATCAGCTACAAGA
* *
38440908 TGAGCTAGTGTAAAACCATGTCTAGGACATGGCATC
1 TGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATC
38440944 GGCATCCTAC
Statistics
Matches: 66, Mismatches: 10, Indels: 10
0.77 0.12 0.12
Matches are distributed among these distances:
44 13 0.20
45 13 0.20
46 40 0.61
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (44 bp):
TGAGCCAGTGTAAGACATGTCTAGGACATGCATCAGCTACAAGA
Found at i:38445095 original size:40 final size:40
Alignment explanation
Indices: 38445035--38445218 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
38445025 TATTCGAATG
* *
38445035 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
38445075 ATATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
38445115 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
38445155 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
38445195 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
38445219 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:38448906 original size:46 final size:44
Alignment explanation
Indices: 38448847--38448972 Score: 173
Period size: 46 Copynumber: 2.8 Consensus size: 44
38448837 TGGGTTATTG
*
38448847 TGAGCTAGTGTAAGACATGTCTGGGACATGCATCTACCT-CGAGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATC-ACCTACGAGA
* *
38448891 TGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTACTAGA
1 TG--AGCCAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
38448937 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 TGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC
38448973 GATATCCTAC
Statistics
Matches: 74, Mismatches: 3, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
44 15 0.20
45 17 0.23
46 42 0.57
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.24
Consensus pattern (44 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
Found at i:38449110 original size:2 final size:2
Alignment explanation
Indices: 38449103--38449141 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
38449093 ACCTATTTGT
38449103 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38449142 GAGATGAGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:38454467 original size:93 final size:93
Alignment explanation
Indices: 38454355--38454526 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
38454345 GCCCATAAGT
* *
38454355 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38454420 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
38454448 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38454513 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
38454527 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:38454522 original size:46 final size:46
Alignment explanation
Indices: 38454347--38454522 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
38454337 TGTAACCCGC
* * *
38454347 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
38454393 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
38454443 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
38454486 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
38454523 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:38456943 original size:29 final size:29
Alignment explanation
Indices: 38456904--38456991 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
38456894 CAAAGATAAC
*
38456904 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
38456933 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
38456962 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
38456992 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:38456962 original size:15 final size:15
Alignment explanation
Indices: 38456904--38456982 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
38456894 CAAAGATAAC
*
38456904 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
38456918 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
38456933 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
38456947 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
38456962 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
38456977 AAGAAA
1 AAGAAA
38456983 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:38456991 original size:15 final size:15
Alignment explanation
Indices: 38456915--38456991 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
38456905 AGAAAACCGA
38456915 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
38456930 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
38456944 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
38456958 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
38456974 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
38456989 ATA
1 ATA
38456992 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:38460049 original size:93 final size:93
Alignment explanation
Indices: 38459937--38460108 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
38459927 GCCCATAAGT
* *
38459937 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38460002 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
38460030 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
38460095 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
38460109 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:38460104 original size:46 final size:46
Alignment explanation
Indices: 38459929--38460104 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
38459919 TGTAACCCGC
* * *
38459929 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
38459975 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
38460025 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
38460068 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
38460105 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:38473248 original size:43 final size:43
Alignment explanation
Indices: 38473099--38473269 Score: 177
Period size: 43 Copynumber: 4.0 Consensus size: 43
38473089 ATAACTTATA
* * *
38473099 ATGCCAACGTCCCAAACATGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCACATATCG
* * * * *
38473142 ATGCCACTGTCCTAGACAAGGTCTTACAC-AAATCAAATA-CG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCACATATCG
* * *
38473183 ATGCCAATGTCCTAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCACATATCG
** * *
38473226 ATGCCAATGTCCCAAATGTGGTCTTACTC-AAGAACACATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACACGAA-ATCACATATCG
38473269 A
1 A
38473270 AAATCCTATG
Statistics
Matches: 106, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
41 29 0.27
42 17 0.16
43 60 0.57
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGAAATCACATATCG
Found at i:38475845 original size:29 final size:29
Alignment explanation
Indices: 38475813--38475885 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
38475803 CTTCGAGCTC
* *
38475813 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38475842 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38475871 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
38475886 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:38477096 original size:24 final size:24
Alignment explanation
Indices: 38477055--38477110 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
38477045 TTTTTTTCCT
38477055 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
38477080 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
38477103 TATTCTTT
1 T-TTCTTT
38477111 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:38483742 original size:29 final size:29
Alignment explanation
Indices: 38483710--38483782 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
38483700 CTTCGAGCTC
* *
38483710 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38483739 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
38483768 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
38483783 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:38485008 original size:27 final size:30
Alignment explanation
Indices: 38484950--38485010 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 30
38484940 TTTTTTTTTC
38484950 CTTTTCTTTGTTTTTCTTCATATTCTCTTT
1 CTTTTCTTTGTTTTTCTTCATATTCTCTTT
*
38484980 CTTTT-TTT-TTTTT-TTCAT-TTCTTTATT
1 CTTTTCTTTGTTTTTCTTCATATTCTCT-TT
38485007 CTTT
1 CTTT
38485011 CTACATAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
27 11 0.38
28 5 0.17
29 3 0.10
30 5 0.17
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (30 bp):
CTTTTCTTTGTTTTTCTTCATATTCTCTTT
Found at i:38487029 original size:40 final size:40
Alignment explanation
Indices: 38486972--38487067 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
38486962 CTATCTCGAT
* *
38486972 ATCGTACACTTAATGCCACACGTAGCCGAAA-CTATTCCAA
1 ATCGCACACTTAGTGCCACACGTAGCC-AAAGCTATTCCAA
*** * *
38487012 ATCGCACACTTAGTGCCATTTGTAGCCAAAGCTATTTCGA
1 ATCGCACACTTAGTGCCACACGTAGCCAAAGCTATTCCAA
38487052 ATCGCACACTTAGTGC
1 ATCGCACACTTAGTGC
38487068 TGAACTTAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.06
40 45 0.94
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (40 bp):
ATCGCACACTTAGTGCCACACGTAGCCAAAGCTATTCCAA
Found at i:38490540 original size:16 final size:16
Alignment explanation
Indices: 38490519--38490557 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
38490509 TCGACAAATC
*
38490519 CCAAAATGCCGAAAAG
1 CCAAAATGCCAAAAAG
38490535 CCAAAATGCCAAAAAG
1 CCAAAATGCCAAAAAG
38490551 CCAAAAT
1 CCAAAAT
38490558 TTTGGATACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.54, C:0.26, G:0.13, T:0.08
Consensus pattern (16 bp):
CCAAAATGCCAAAAAG
Found at i:38490547 original size:8 final size:8
Alignment explanation
Indices: 38490514--38490557 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
38490504 GCAGATCGAC
*
38490514 AAATCCCA
1 AAATGCCA
38490522 AAATGCCGA
1 AAATGCC-A
38490531 AAA-GCCA
1 AAATGCCA
38490538 AAATGCCA
1 AAATGCCA
*
38490546 AAAAGCCA
1 AAATGCCA
38490554 AAAT
1 AAAT
38490558 TTTGGATACA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 4 0.13
8 23 0.74
9 4 0.13
ACGTcount: A:0.55, C:0.25, G:0.11, T:0.09
Consensus pattern (8 bp):
AAATGCCA
Found at i:38490836 original size:29 final size:28
Alignment explanation
Indices: 38490778--38490840 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
38490768 TAAATGTGAC
**
38490778 TTGGGCCTAATAGGCCATACGAATGTGA
1 TTGGGCCTAATAGGCCATACGAATAAGA
**
38490806 TTTGGGCCTAAT-GGACCATGTGAATAAGA
1 -TTGGGCCTAATAGG-CCATACGAATAAGA
38490835 TTGGGC
1 TTGGGC
38490841 TTAGTGGGTC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (28 bp):
TTGGGCCTAATAGGCCATACGAATAAGA
Found at i:38491954 original size:17 final size:18
Alignment explanation
Indices: 38491921--38491954 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38491911 TCTAAGGAAG
38491921 GGTTTTCAATGAAAACAA
1 GGTTTTCAATGAAAACAA
*
38491939 GGTTTTCGAT-AAAACA
1 GGTTTTCAATGAAAACA
38491955 CTTCAATGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAA
Found at i:38493770 original size:64 final size:64
Alignment explanation
Indices: 38493669--38493789 Score: 233
Period size: 64 Copynumber: 1.9 Consensus size: 64
38493659 TTCTTTGATG
*
38493669 AAGATTAATATGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTGTTTATCA
1 AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTGTTTATCA
38493733 AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTG
1 AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTG
38493790 CTTTTCTCAT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.25, C:0.23, G:0.13, T:0.39
Consensus pattern (64 bp):
AAGATTAATACGGCCTACTCATCGATCTTTTTCTCGAGTCTCTAGCTTCTAAATCTGTTTATCA
Found at i:38499757 original size:39 final size:39
Alignment explanation
Indices: 38499559--38499756 Score: 272
Period size: 39 Copynumber: 5.1 Consensus size: 39
38499549 GGATTCCATT
* *
38499559 CCAGCATGTAGCCTGCGGACTTCAAGTCCGGATATATTT
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * *
38499598 CTAGCACATAGCCTACGGACTTCAAGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
38499637 CCAGCATATAGCTTGCGGACTTCAAGTCTGGATATATTC
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* *
38499676 CCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * *
38499715 CCAACATATAGCCTACGGA-TCTCATGTCCGGATATATTC
1 CCAGCATATAGCCTGCGGACT-TCAAGTCCGGATATATTC
38499754 CCA
1 CCA
38499757 ATATCGTGCA
Statistics
Matches: 141, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 141 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (39 bp):
CCAGCATATAGCCTGCGGACTTCAAGTCCGGATATATTC
Found at i:38520040 original size:42 final size:42
Alignment explanation
Indices: 38519861--38520063 Score: 144
Period size: 42 Copynumber: 4.7 Consensus size: 42
38519851 AGTAAGATGC
*
38519861 CAATGCCATATCCCAGATATCGTCTTACATGGGATCACATAT
1 CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
* * * * * *
38519903 -GATGCCAATAGCCCA-ACTATGGTCTTACAAGATG-TCTCAAAT
1 CAATGCC-ATATCCCAGA-TATGGTCTTACATG-GGATCACATAT
* * * * * **
38519945 CGATGCCAT-GCCCGAGACATGGTATTACACGAAATCACATATTGAT
1 CAATGCCATATCCC-AGATATGGTCTTACATGGGATCAC--A-T-AT
38519991 GCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
1 --CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
* *
38520035 CAATGCCATATCTCAGATATTGTCTTACA
1 CAATGCCATATCCCAGATATGGTCTTACA
38520064 CGAAACAATA
Statistics
Matches: 124, Mismatches: 23, Indels: 28
0.71 0.13 0.16
Matches are distributed among these distances:
41 10 0.08
42 69 0.56
43 8 0.06
44 3 0.02
45 1 0.01
46 3 0.02
48 27 0.22
49 3 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGGGATCACATAT
Found at i:38523516 original size:40 final size:40
Alignment explanation
Indices: 38523426--38523628 Score: 306
Period size: 40 Copynumber: 5.2 Consensus size: 40
38523416 GGACTAAGAT
* * *
38523426 CCGAAGGCATTTGTGCTAGTGACTATAT-CGGGTTAAGT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
38523464 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
38523504 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
38523544 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
** *
38523584 CCGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAAAT-
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
38523622 CCGAAGG
1 CCGAAGG
38523629 TACTTGGGTT
Statistics
Matches: 155, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 32 0.21
39 17 0.11
40 106 0.68
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:38530848 original size:119 final size:120
Alignment explanation
Indices: 38530629--38530888 Score: 432
Period size: 119 Copynumber: 2.2 Consensus size: 120
38530619 GGACTAAGAT
* * * *
38530629 CCGAAGGCATTTGTGCTAGTGACTATATCTAGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA
* *
38530694 TATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
66 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
38530749 CCGAAGG-ATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA
38530813 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
66 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
38530868 TCGAAGGCATTTGTGCGAGTT
1 CCGAAGGCATTTGTGCGAGTT
38530889 GTTATATCTG
Statistics
Matches: 130, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
119 110 0.85
120 20 0.15
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (120 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA
TATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:38530896 original size:40 final size:40
Alignment explanation
Indices: 38530629--38530888 Score: 432
Period size: 40 Copynumber: 6.5 Consensus size: 40
38530619 GGACTAAGAT
* * ** *
38530629 CCGAAGGCATTTGTGCTAGTGACTATATCTAGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
38530669 CCGAAGGCATTTGTACGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
38530709 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
38530749 CCGAAGG-ATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
38530788 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
38530828 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
38530868 TCGAAGGCATTTGTGCGAGTT
1 CCGAAGGCATTTGTGCGAGTT
38530889 GTTATATCTG
Statistics
Matches: 211, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.18
40 173 0.82
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:38530902 original size:119 final size:118
Alignment explanation
Indices: 38530617--38530913 Score: 427
Period size: 119 Copynumber: 2.5 Consensus size: 118
38530607 CGGATGATAA
* * *
38530617 CCGGACTAAGATCCGAAGGCATTTGTGCTAG-TGACTATATCTAGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTG-CTATATCT-GGCTAAGTCCCGAAGGCATTT
*
38530681 GTACGAGTTACTATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
63 GTACGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
38530737 CCGGGTTAAGTCCCGAAGG-ATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTGCTATAT-CTGGCTAAGTCCCGAAGGCATTTG
*
38530801 TGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
64 TACGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
38530856 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTGTTATATCTGGCTAAATCTCGAAGG
1 CCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTGCTATATCTGGCTAAGTCCCGAAGG
38530914 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
118 1 0.01
119 122 0.77
120 35 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (118 bp):
CCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTGCTATATCTGGCTAAGTCCCGAAGGCATTTGTA
CGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38532487 original size:21 final size:21
Alignment explanation
Indices: 38532463--38532513 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
38532453 TTGGGGACAG
38532463 TTTGGAAACAAAA-TAGAAAAT
1 TTTGGAAACAAAATTA-AAAAT
*
38532484 TTT-GAAATAAAATTAAAAAT
1 TTTGGAAACAAAATTAAAAAT
38532504 TTTGGAAACA
1 TTTGGAAACA
38532514 TGGGTCACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.55, C:0.04, G:0.12, T:0.29
Consensus pattern (21 bp):
TTTGGAAACAAAATTAAAAAT
Found at i:38534801 original size:21 final size:20
Alignment explanation
Indices: 38534763--38534801 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
38534753 CTCTTGAAAC
*
38534763 AGGGCACACACCCGTGTGGA
1 AGGGCACACACCCATGTGGA
*
38534783 AGGGCAACACGCCCATGTG
1 AGGGC-ACACACCCATGTG
38534802 TTCATTATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.26, C:0.31, G:0.33, T:0.10
Consensus pattern (20 bp):
AGGGCACACACCCATGTGGA
Found at i:38536162 original size:46 final size:45
Alignment explanation
Indices: 38536092--38536264 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
38536082 GTATATCGCG
* * * *
38536092 AGGCCGATGCATGTTCCAGTCATGTTTTACACTAGCTCTCGTCTCA
1 AGGCCGATGCATG-TCCAGACATGTCTTACACTGGCTCTCATCTCA
* * *
38536138 ATGCCGATGCATGTCCTAAACATGTCTTACACTGGCT-TAAAAATCTCA
1 AGGCCGATGCATGTCC-AGACATGTCTTACACTGGCTCT---CATCTCA
*
38536186 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATGCT-G
1 AGGCCGATGCATGT-CCAGACATGTCTTACACTGGCTCTCAT-CTCA
* * *
38536232 TGGCTGATGCATGTCCCAGTCATGTCTTACACT
1 AGGCCGATGCATGT-CCAGACATGTCTTACACT
38536265 AGCACACATA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
45 4 0.04
46 60 0.57
47 2 0.02
48 37 0.35
49 3 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (45 bp):
AGGCCGATGCATGTCCAGACATGTCTTACACTGGCTCTCATCTCA
Found at i:38536241 original size:94 final size:93
Alignment explanation
Indices: 38536092--38536264 Score: 222
Period size: 94 Copynumber: 1.8 Consensus size: 93
38536082 GTATATCGCG
* * * * *
38536092 AGGCCGATGCATGTTCCAGTCATGTTTTACACTAGCTCTCGTCTCAATGCCGATGCATGTCCTAA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCT-AATGCCGATGCATGTCCCAA
38536157 ACATGTCTTACACTGGCTTAAAAATCTCA
65 ACATGTCTTACACTGGCTTAAAAATCTCA
* * *
38536186 AGGCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATGCT-GTGGCTGATGCATGTCCCA
1 AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCAT-CTAAT-GCCGATGCATGTCCCA
**
38536250 GTCATGTCTTACACT
64 AACATGTCTTACACT
38536265 AGCACACATA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
93 1 0.01
94 64 0.96
95 2 0.03
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.30
Consensus pattern (93 bp):
AGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAATGCCGATGCATGTCCCAAA
CATGTCTTACACTGGCTTAAAAATCTCA
Found at i:38548187 original size:28 final size:30
Alignment explanation
Indices: 38548156--38548219 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
38548146 TCATATATAT
*
38548156 ATATCACATA-TTTC-CAATTCATTTG-CAC
1 ATATCACATATTTTCTC-ATACATTTGTCAC
**
38548184 ATATTGCATATTTTCTCATACATTTGTCAC
1 ATATCACATATTTTCTCATACATTTGTCAC
38548214 ATATCA
1 ATATCA
38548220 TCACTTGTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
28 8 0.29
29 12 0.43
30 8 0.29
ACGTcount: A:0.31, C:0.22, G:0.05, T:0.42
Consensus pattern (30 bp):
ATATCACATATTTTCTCATACATTTGTCAC
Found at i:38548497 original size:42 final size:42
Alignment explanation
Indices: 38548404--38548539 Score: 125
Period size: 43 Copynumber: 3.2 Consensus size: 42
38548394 CGTTCCGGAT
* * * **
38548404 GTGGTCTTACATGTAATCAAATATCGATGTCACTGTCCCAGAC
1 GTGGTCTTACACGAAATCAAATAT-GATGCCAAAGTCCCAGAC
38548447 AG-GGTCTTACACGAAATCAAATATGATGCCAAAGTCCCAGAC
1 -GTGGTCTTACACGAAATCAAATATGATGCCAAAGTCCCAGAC
* * *
38548489 GTGGTCTTACACATAAATCATAAGT-CGATGCTAACA-TCCCAGAC
1 GTGGTCTTACAC-GAAATCA-AA-TATGATGCCAA-AGTCCCAGAC
38548533 GTGGTCT
1 GTGGTCT
38548540 GACATGATAT
Statistics
Matches: 79, Mismatches: 8, Indels: 10
0.81 0.08 0.10
Matches are distributed among these distances:
41 1 0.01
42 25 0.32
43 26 0.33
44 25 0.32
45 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (42 bp):
GTGGTCTTACACGAAATCAAATATGATGCCAAAGTCCCAGAC
Found at i:38561136 original size:44 final size:43
Alignment explanation
Indices: 38561078--38561231 Score: 177
Period size: 44 Copynumber: 3.5 Consensus size: 43
38561068 GACTATATAA
38561078 ATATATTGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGCTAT
1 ATATATTGGCACTTAGTGTGCGAGA-TGAGATAGCTTCGGCTAT
*
38561122 ATATATTGGTACTTAGTGTGC-ATGATTGAGATAGCTTCGGCTATAT
1 ATATATTGGCACTTAGTGTGCGA-GA-TGAGATAGCTTCGGC--TAT
* **
38561168 ATATATTGGCACTTAGTGTGTGAGATCGATTTAGCTTCGGCTAT
1 ATATATTGGCACTTAGTGTGCGAGAT-GAGATAGCTTCGGCTAT
* * *
38561212 TTAT-TTGACACTTATTGTGC
1 ATATATTGGCACTTAGTGTGC
38561232 AGGTTTCCTG
Statistics
Matches: 95, Mismatches: 10, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
43 14 0.15
44 43 0.45
45 1 0.01
46 36 0.38
47 1 0.01
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (43 bp):
ATATATTGGCACTTAGTGTGCGAGATGAGATAGCTTCGGCTAT
Found at i:38561186 original size:46 final size:46
Alignment explanation
Indices: 38561035--38561231 Score: 203
Period size: 46 Copynumber: 4.4 Consensus size: 46
38561025 TTCGGTTCCG
* * * *
38561035 TATTGGCACTT-G-GTGCGAGTTTGAAATAGTTTCGACTATATAAATA
1 TATTGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATAT--ATA
*
38561081 TATTGGCACTTAGTGTGCGAGACTGAGATAGCTTCGGC--TATATA
1 TATTGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATA
*
38561125 TATTGGTACTTAGTGTGC-ATGATTGAGATAGCTTCGGCTATATATA
1 TATTGGCACTTAGTGTGCGA-GATTGAGATAGCTTCGGCTATATATA
* * **
38561171 TATTGGCACTTAGTGTGTGAGATCGATTTAGCTTCGGCTAT-T-TA
1 TATTGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATA
* *
38561215 T-TTGACACTTATTGTGC
1 TATTGGCACTTAGTGTGC
38561232 AGGTTTCCTG
Statistics
Matches: 130, Mismatches: 15, Indels: 15
0.81 0.09 0.09
Matches are distributed among these distances:
43 14 0.11
44 40 0.31
45 1 0.01
46 54 0.42
47 2 0.02
48 19 0.15
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (46 bp):
TATTGGCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATA
Found at i:38564508 original size:44 final size:44
Alignment explanation
Indices: 38564437--38564595 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 44
38564427 TATGTGTTAT
* * *
38564437 CATGTAAGACCACGTCTGAGACGTTGGCATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGATTTA
* * *
38564481 CGTGTAAGACCACGTCTGGGATATTGGCATC-ATATTTTATTT-
1 CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
* *
38564523 CATGTAAGACC-CTTTCTGGGACAGTGGCATCGATATTTGA-TTA
1 CATGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTTA
* *
38564566 CATGTAAGACCACATTTGGGACATTGGCAT
1 CATGTAAGACCACGTCTGGGACATTGGCAT
38564596 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
41 1 0.01
42 28 0.29
43 39 0.41
44 28 0.29
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (44 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTTA
Found at i:38570385 original size:48 final size:48
Alignment explanation
Indices: 38570330--38570448 Score: 175
Period size: 48 Copynumber: 2.5 Consensus size: 48
38570320 TATATATGTG
* * *
38570330 TGTGGTAAAGCCGAATGGCTAATTTGAGACATGTACGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATATGAAACATGTACGAGAGATGTATA
* * *
38570378 TGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGAGATGTATA
1 TGTGGTAAAGCCGAATGGCTAATATGAAACATGTACGAGAGATGTATA
*
38570426 TTTGGTAAAGCCGAATGGCTAAT
1 TGTGGTAAAGCCGAATGGCTAAT
38570449 GTGCAATACG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 63 1.00
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.29
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATATGAAACATGTACGAGAGATGTATA
Found at i:38570472 original size:48 final size:47
Alignment explanation
Indices: 38570332--38570475 Score: 164
Period size: 48 Copynumber: 3.0 Consensus size: 47
38570322 TATATGTGTG
* * * *
38570332 TGGTAAAGCCGAATGGCTAATTTGAGACATGTACGAGATATGTATATG
1 TGGTAAAGCCGAATGGCTAATATGA-ATATGTACGAGATGTGTATATT
* *
38570380 TGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGA-GATGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTACGAGATG-TGTATATT
* * *
38570428 TGGTAAAGCCGAATGGCTAATGTGCAATACGTAGGAGATGTGTATATT
1 TGGTAAAGCCGAATGGCTAATATG-AATATGTACGAGATGTGTATATT
38570476 GTGGCCGAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
48 80 0.98
49 2 0.02
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (47 bp):
TGGTAAAGCCGAATGGCTAATATGAATATGTACGAGATGTGTATATT
Found at i:38570659 original size:37 final size:37
Alignment explanation
Indices: 38570609--38570685 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
38570599 ATATATTCCA
* *
38570609 GGTAAGACCCGATGACTACGTGTGGAGATTCTGTCCG
1 GGTAAGACCCGATGACCACGTGTGGAGATTCTATCCG
* *
38570646 GGTAAGACCCGATGACCACGTGTGGTGATTTTATCCG
1 GGTAAGACCCGATGACCACGTGTGGAGATTCTATCCG
38570683 GGT
1 GGT
38570686 TAAAACCCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.21, C:0.21, G:0.32, T:0.26
Consensus pattern (37 bp):
GGTAAGACCCGATGACCACGTGTGGAGATTCTATCCG
Found at i:38574206 original size:40 final size:40
Alignment explanation
Indices: 38574151--38574382 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
38574141 TATTCGGATG
38574151 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
38574191 ATATCCGGGCTAAGTCCCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGC----T----AAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
38574242 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** *
38574282 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAA-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACT
* * *
38574322 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
38574362 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
38574383 ATACATGGAT
Statistics
Matches: 162, Mismatches: 17, Indels: 27
0.79 0.08 0.13
Matches are distributed among these distances:
39 14 0.09
40 87 0.54
41 1 0.01
43 21 0.13
44 1 0.01
47 1 0.01
48 21 0.13
49 1 0.01
51 15 0.09
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:38574261 original size:51 final size:48
Alignment explanation
Indices: 38574162--38574263 Score: 159
Period size: 51 Copynumber: 2.1 Consensus size: 48
38574152 TATCCGGGCT
*
38574162 AAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCG
1 AAGTCCCGAAGGCATTTGTGCAAGTTACTATACCCGGGCTAAGTCCCG
*
38574210 AAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCCCG
1 AAGTCCCGAAGGCATTTGTGC-A--AGTTACTATACCCGGGCTAAGTCCCG
38574261 AAG
1 AAG
38574264 GCATTTGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
48 21 0.43
49 1 0.02
51 27 0.55
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.24
Consensus pattern (48 bp):
AAGTCCCGAAGGCATTTGTGCAAGTTACTATACCCGGGCTAAGTCCCG
Found at i:38585405 original size:39 final size:39
Alignment explanation
Indices: 38585208--38585388 Score: 290
Period size: 39 Copynumber: 4.6 Consensus size: 39
38585198 CATGGTATTT
*
38585208 GAAATATATCCGGACATGAGGTCCGCAGGCTACATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
38585247 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
38585286 GAAATATATCCAGACATGAAGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
38585325 GGAATATATCCGGACATGAGGTCCGCAGGCTATATGGTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * *
38585364 GAAATATATCCAGACTTGAAGTCCG
1 GAAATATATCCGGACATGAGGTCCG
38585389 TAAGCCACGT
Statistics
Matches: 131, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 131 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (39 bp):
GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:38592008 original size:39 final size:39
Alignment explanation
Indices: 38591965--38592147 Score: 276
Period size: 39 Copynumber: 4.7 Consensus size: 39
38591955 CGTGGTATTT
*
38591965 GAAATATATTCGGACATGAGGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * *
38592004 GAAATATATTCAGACATGAGGTTCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
*
38592043 GAAATATATCCGGACATGAAGTCCGCAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* *
38592082 GGAATATATCCGGACATGAGGTCCGTAGGCTATATGCTG
1 GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
* * *
38592121 GAAATATATCCAGACTTGAAGTCCGCA
1 GAAATATATCCGGACATGAGGTCCGCA
38592148 AGCCACGTGC
Statistics
Matches: 130, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 130 1.00
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (39 bp):
GAAATATATCCGGACATGAGGTCCGCAGGCTATATGCTG
Found at i:38596293 original size:40 final size:40
Alignment explanation
Indices: 38596238--38596508 Score: 393
Period size: 40 Copynumber: 6.8 Consensus size: 40
38596228 GGATATAGCT
* * *
38596238 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
38596278 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
38596318 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
38596358 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
38596398 ACTGGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
38596438 ACTCGCACAAATGCCTTCGGGACTT-GCCCGAAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * * *
38596477 ACTAGCGCAGATGCCTTTGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
38596509 TTATCATCCA
Statistics
Matches: 211, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
39 31 0.15
40 178 0.84
41 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:38604446 original size:40 final size:40
Alignment explanation
Indices: 38604391--38604658 Score: 389
Period size: 40 Copynumber: 6.8 Consensus size: 40
38604381 GGATATAGCT
* * *
38604391 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
38604431 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
38604471 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
38604511 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
*
38604551 ACTGGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* ** *
38604591 ACTCGCACAAATGCCTTCGGGACTT-GCCCGAAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
38604630 ACTAGCGCAGATGCCTT-GGGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
38604659 AGTTATCATC
Statistics
Matches: 210, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
38 7 0.03
39 28 0.13
40 173 0.82
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:38617619 original size:16 final size:16
Alignment explanation
Indices: 38617600--38617631 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
38617590 AATTGTTTTA
38617600 TTACAAAATTTCACTT
1 TTACAAAATTTCACTT
*
38617616 TTACATAATTTCACTT
1 TTACAAAATTTCACTT
38617632 ACTCCATTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (16 bp):
TTACAAAATTTCACTT
Found at i:38617958 original size:50 final size:50
Alignment explanation
Indices: 38617893--38618225 Score: 246
Period size: 50 Copynumber: 6.6 Consensus size: 50
38617883 GGTACATGTT
*
38617893 GTAGCCTGCACTTAGTACTACACACATGACTTAATCATCTTATACAAGTA
1 GTAGCCTGCACTTAGTACTACACACATGACTTAATCATCTGATACAAGTA
* * * * * * * *
38617943 GTATCCTACACTTAGTACTACACACGTGA-TCGAAGTTATCAGGTACGCA-TA
1 GTAGCCTGCACTTAGTACTACACACATGACT-TAA-TCATCTGATAC-AAGTA
* *** * * *
38617994 GTAGCCTGCACTTAGTACTAGACATGCGACCT-ATCTATCTGGTACACGTA
1 GTAGCCTGCACTTAGTACTACACACATGACTTAATC-ATCTGATACAAGTA
* * *
38618044 CTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTA
1 GTAGCCTGCACTTAGTACTACACACATGACTTAATCATCTGATACAAGTA
* * * * * * *
38618094 GTAGCCTGCACTTAGTACTACACACGTGA-TCGAAGTTAACGGGTACGCA-TA
1 GTAGCCTGCACTTAGTACTACACACATGACT-TAA-TCATCTGATAC-AAGTA
*** * * * *
38618145 GTAGCCTGCACTTAGTACTACACATGCGACCT-ATCAATCTGGTCCATGTA
1 GTAGCCTGCACTTAGTACTACACACATGACTTAATC-ATCTGATACAAGTA
*
38618195 GTAGCCTGCACTTAGTACTACACACGTGACT
1 GTAGCCTGCACTTAGTACTACACACATGACT
38618226 CACAATGGAT
Statistics
Matches: 219, Mismatches: 51, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
49 4 0.02
50 144 0.66
51 70 0.32
52 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
GTAGCCTGCACTTAGTACTACACACATGACTTAATCATCTGATACAAGTA
Found at i:38618096 original size:151 final size:151
Alignment explanation
Indices: 38617834--38618225 Score: 615
Period size: 151 Copynumber: 2.6 Consensus size: 151
38617824 GAAGCTCTCT
* * * * *
38617834 GGTATGCATAGTAGCTTGCACTTAGTAATACACATGCCACCTATCAATC-GGTACATGTTGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
* * *
38617898 CTGCACTTAGTACTACACACATGACTTAATCATCTTATACAAGTAGTATCCTACACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTACACTTAGTACTA
*
38617963 CACACGTGATCGAAGTTATCA
131 CACACGTGATCGAAGTTAACA
* * * *
38617984 GGTACGCATAGTAGCCTGCACTTAGTACTAGACATGCGACCTATCTATCTGGTACACGTACTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
* *
38618049 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
66 CTGCACTTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTACACTTAGTACTA
*
38618114 CACACGTGATCGAAGTTAACG
131 CACACGTGATCGAAGTTAACA
*
38618135 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTCCATGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
*
38618200 CTGCACTTAGTACTACACACGTGACT
66 CTGCACTTAGTACTACACACATGACT
38618226 CACAATGGAT
Statistics
Matches: 219, Mismatches: 22, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
150 43 0.20
151 176 0.80
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTACATGTAGTAGC
CTGCACTTAGTACTACACACATGACTTAACCATCTGATACAAGTAGTAGCCTACACTTAGTACTA
CACACGTGATCGAAGTTAACA
Found at i:38618139 original size:101 final size:101
Alignment explanation
Indices: 38618034--38618223 Score: 272
Period size: 101 Copynumber: 1.9 Consensus size: 101
38618024 CTATCTATCT
* * * *
38618034 GGTACACGTACTAGCCTGCACTTAGTACTACACACATGACTTAACCATCTGATACACGTAGTAGC
1 GGTACACATACTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGC
38618099 CTGCACTTAGTACTACACACGTGATCGAAGTTAACG
66 CTGCACTTAGTACTACACACGTGATCGAAGTTAACG
* * ** * * * *
38618135 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCTGGTCCATGTAGTAGC
1 GGTACACATACTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGC
38618200 CTGCACTTAGTACTACACACGTGA
66 CTGCACTTAGTACTACACACGTGA
38618224 CTCACAATGG
Statistics
Matches: 77, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 77 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (101 bp):
GGTACACATACTAGCCTGCACTTAGTACTACACACACGACCTAACAATCTGATACACGTAGTAGC
CTGCACTTAGTACTACACACGTGATCGAAGTTAACG
Found at i:38620924 original size:43 final size:43
Alignment explanation
Indices: 38620858--38621024 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 43
38620848 AGCTCATAAA
* * * *
38620858 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
38620900 ATGCCACTGTCCTAGACAGGGTCTTACACGAAATCGA-ATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATC-ACAT-ATCG
* *
38620943 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAGA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* * *
38620986 ATGCTAATGTCCCAGACATGGTTTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
38621025 CTCGGTAACC
Statistics
Matches: 101, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 6 0.06
43 90 0.89
44 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:38625679 original size:48 final size:48
Alignment explanation
Indices: 38625608--38625783 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
38625598 AGTACCAATT
* * *
38625608 CCATGTCCCCGACATGGTCTTACA-T-GAATCCACATATCATCATCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCA--CACATATCATCGTCGATG
*
38625656 CCATGTCCCAGACATGGTCTTACATTGGCACACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCGATG
* * *
38625704 CCATGTCCCAGACATGGTCTTAAACTGGCACACATATCATTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCGATG
* *
38625752 CCATATCCTAGACATGGTCTTACA-TAGGCACA
1 CCATGTCCCAGACATGGTCTTACACT-GGCACA
38625784 TTTAGCACGG
Statistics
Matches: 115, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
47 1 0.01
48 111 0.97
49 1 0.01
50 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGTCGATG
Found at i:38645600 original size:39 final size:39
Alignment explanation
Indices: 38645546--38645708 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
38645536 TGTGAATGAA
38645546 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
38645585 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
38645624 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
38645663 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
38645703 TGTGCG
1 TGTGCG
38645709 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:38650712 original size:275 final size:276
Alignment explanation
Indices: 38650220--38650773 Score: 1038
Period size: 275 Copynumber: 2.0 Consensus size: 276
38650210 TAAGAGCTTT
38650220 GAACACTAGTTTAACCTTATCAGATGATGGTTCTATCTTAGCTGAATTAAGAGCTAAGCCAATGT
1 GAACACTAGTTTAACCTTATCAGATGATGGTTCTATCTTAGCTGAATTAAGAGCTAAGCCAATGT
38650285 TTCTTGAAGAAATTTGTGAAGTTCAGAAAGATGACAATGAGTTGCAAGCCAAAAGAGCTCTGTGT
66 TTCTTGAAGAAATTTGTGAAGTTCAGAAAGATGACAATGAGTTGCAAGCCAAAAGAGCTCTGTGT
*
38650350 GAGTTGGGTATAGAGTCAGATTTTTATATTAGTTCTGACGGTTGTTTAATGTTCAAAAATAGGAT
131 GAGTTGGGTATAGAGTCAGATTTTTATATTAGTTCTGACGATTGTTTAATGTTCAAAAATAGGAT
*
38650415 GTGTACCAAAGAATGATGAGCTTATTCGAAAGATTTTAGAGGAAGCACATAGCAGTTCTTTGTCT
196 GTGTACCAAAGAATGATGAGCTTATTCGAAAGATTTTAGAGGAAGCACATAACAGTTCTTTGTCT
38650480 ATCCATCCAGGTAGTA
261 ATCCATCCAGGTAGTA
*
38650496 GAACACTAGTTTAACCTTATCGGATGATGGTTCTATCTT-GCTGAATTAAGAGCTAAGCCAATGT
1 GAACACTAGTTTAACCTTATCAGATGATGGTTCTATCTTAGCTGAATTAAGAGCTAAGCCAATGT
* * *
38650560 TTCTTGAAGAAATTTGTGAAGTTTAGAAAGATGACAGTGAGTTGCAAGCCAAGAGAGCTCTGTGT
66 TTCTTGAAGAAATTTGTGAAGTTCAGAAAGATGACAATGAGTTGCAAGCCAAAAGAGCTCTGTGT
38650625 GAGTTGGGTATAGAGTCAGATTTTTATATTAGTTCTGACGATTGTTTAATGTTCAAAAATAGGAT
131 GAGTTGGGTATAGAGTCAGATTTTTATATTAGTTCTGACGATTGTTTAATGTTCAAAAATAGGAT
38650690 GTGTACCAAAGAATGATGAGCTTATTCGAAAGATTTTAGAGGAAGCACATAACAGTTCTTTGTCT
196 GTGTACCAAAGAATGATGAGCTTATTCGAAAGATTTTAGAGGAAGCACATAACAGTTCTTTGTCT
*
38650755 ATCCATGCAGGTAGTA
261 ATCCATCCAGGTAGTA
38650771 GAA
1 GAA
38650774 AGATGTATAA
Statistics
Matches: 271, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
275 233 0.86
276 38 0.14
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (276 bp):
GAACACTAGTTTAACCTTATCAGATGATGGTTCTATCTTAGCTGAATTAAGAGCTAAGCCAATGT
TTCTTGAAGAAATTTGTGAAGTTCAGAAAGATGACAATGAGTTGCAAGCCAAAAGAGCTCTGTGT
GAGTTGGGTATAGAGTCAGATTTTTATATTAGTTCTGACGATTGTTTAATGTTCAAAAATAGGAT
GTGTACCAAAGAATGATGAGCTTATTCGAAAGATTTTAGAGGAAGCACATAACAGTTCTTTGTCT
ATCCATCCAGGTAGTA
Found at i:38653391 original size:52 final size:53
Alignment explanation
Indices: 38653234--38653436 Score: 124
Period size: 54 Copynumber: 3.8 Consensus size: 53
38653224 AGGGTTTAAG
* * * * * * * * *
38653234 GATACCAAGTAAGACCATGCCAAGGCATAGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCACGTAGGACCATGCCAAGACATGGAAATGGTAAG-TTCATAAGGCAAA
* * * * * * * * * *
38653288 GAAATCATGTAAGACAATGTCAAGACATGGAATTGATAAACTACTATAAGGCAAA
1 GATACCACGTAGGACCATGCCAAGACATGGAAATGGT-AAGTTC-ATAAGGCAAA
* * * *
38653343 GAT-CTC-CTGTA-GACCATGCCAAGTCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATAC-CAC-GTAGGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGCAAA
*
38653395 GATACCACGTAGGACCATGTCAAGACATGGAAATGGTAAGTT
1 GATACCACGTAGGACCATGCCAAGACATGGAAATGGTAAGTT
38653437 TAAAAAGAAA
Statistics
Matches: 111, Mismatches: 31, Indels: 15
0.71 0.20 0.10
Matches are distributed among these distances:
52 16 0.14
53 31 0.28
54 48 0.43
55 16 0.14
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GATACCACGTAGGACCATGCCAAGACATGGAAATGGTAAGTTCATAAGGCAAA
Found at i:38656582 original size:48 final size:48
Alignment explanation
Indices: 38656511--38656833 Score: 438
Period size: 48 Copynumber: 6.7 Consensus size: 48
38656501 TAAAGTACCA
*
38656511 ATGCCATGTCCTC-GACATGGTCTTACA-T-GAATCCACATATCATCGCTG
1 ATGCCATGTCC-CAGACATGGTCTTACACTGGCA--CACATATCATCGCTG
* **
38656559 ATGCCATGTCACAGACATGGTCTTACACTGGCACACATATCATCATTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
* * *
38656607 ATTCCATGTCCCAGACATGGTCTTACACTGGCAGACATATCATCCCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
* *
38656655 ATGCCATGTCCCAGACATGGTCTTACATTGGCACACATATCATTGCCT-
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCG-CTG
* * *
38656703 ATGCCATGTCCCAGACGTGGTCTTGCACTGGCACACATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
* * *
38656751 ATACCATGTCCCAAACATGGTCTTACACTGGCACACATATCATCGGTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
*
38656799 ATGCCATGTCCCAGACATGGTCTTACACAGGCACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACA
38656834 TTTACCACGG
Statistics
Matches: 242, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
47 2 0.01
48 235 0.97
49 3 0.01
50 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCATCGCTG
Found at i:38660787 original size:15 final size:15
Alignment explanation
Indices: 38660767--38660834 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
38660757 ATATCTTGGG
38660767 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
38660782 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
*
38660797 TTTCTTTATTCTGG-
1 TTTCTTTATCCTGGA
* *
38660811 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
38660826 TTTCTTTAT
1 TTTCTTTAT
38660835 TCGGTTTCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
14 11 0.24
15 34 0.76
ACGTcount: A:0.12, C:0.18, G:0.12, T:0.59
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:38660830 original size:29 final size:29
Alignment explanation
Indices: 38660758--38660843 Score: 104
Period size: 29 Copynumber: 3.0 Consensus size: 29
38660748 CATAGTATCA
* * * *
38660758 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGG-TTTCTC
38660788 TAT-TCTGGATTTCTTTATTCTGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGTTTCTC
38660817 TATCTTGGATTTCTTTATTC-GGTTTCT
1 TATCTTGGATTTCTTTATTCTGGTTTCT
38660844 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.14
29 23 0.46
30 20 0.40
ACGTcount: A:0.10, C:0.17, G:0.15, T:0.57
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCTGGTTTCTC
Found at i:38663274 original size:46 final size:46
Alignment explanation
Indices: 38663224--38663352 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
38663214 TGGTTGAGCA
*
38663224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
38663270 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
38663316 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
38663353 GCGGGTTACA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Done.