Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 154 of 328
Found at i:45043497 original size:24 final size:24
Alignment explanation
Indices: 45043459--45043509 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
45043449 TAGCATTTTA
* *
45043459 TAATTTTTATCATTTTTGA-AATTT
1 TAATTTTAATAATTTTT-ATAATTT
45043483 TAATTTTAATAATTTTTATAATTT
1 TAATTTTAATAATTTTTATAATTT
45043507 TAA
1 TAA
45043510 AAATTCTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (24 bp):
TAATTTTAATAATTTTTATAATTT
Found at i:45043514 original size:33 final size:33
Alignment explanation
Indices: 45043453--45043524 Score: 92
Period size: 33 Copynumber: 2.2 Consensus size: 33
45043443 GACTTTTAGC
* ** *
45043453 ATTTT-ATAATTTTTATCATTTTTGAAATTTTA
1 ATTTTAATAATTTTTATAATTTTAAAAATTCTA
45043485 ATTTTAATAATTTTTATAATTTTAAAAATTCTA
1 ATTTTAATAATTTTTATAATTTTAAAAATTCTA
*
45043518 TTTTTAA
1 ATTTTAA
45043525 AAAATATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 5 0.15
33 29 0.85
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (33 bp):
ATTTTAATAATTTTTATAATTTTAAAAATTCTA
Found at i:45051414 original size:2 final size:2
Alignment explanation
Indices: 45051407--45051435 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
45051397 GACAGATCAG
45051407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
45051436 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:45051440 original size:2 final size:2
Alignment explanation
Indices: 45051435--45051463 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
45051425 ATATATATAT
45051435 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
45051464 TTACTATAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:45054816 original size:18 final size:18
Alignment explanation
Indices: 45054776--45054819 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
45054766 TTAATAAAAC
*
45054776 TAAAAAATAATATTTTATT
1 TAAAAAAT-ATATTTTATA
45054795 TAAAAAAT-TATTTTAATA
1 TAAAAAATATATTTT-ATA
45054813 TAAAAAA
1 TAAAAAA
45054820 GGAGTTGCGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 9 0.39
19 8 0.35
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAAAAATATATTTTATA
Found at i:45059770 original size:13 final size:13
Alignment explanation
Indices: 45059752--45059776 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45059742 TCAAAAATGT
45059752 AAAAATCATCAAG
1 AAAAATCATCAAG
45059765 AAAAATCATCAA
1 AAAAATCATCAA
45059777 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:45061876 original size:29 final size:29
Alignment explanation
Indices: 45061843--45062002 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
45061833 GTGACGAGAT
45061843 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45061872 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
45061901 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
45061930 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
45061959 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
45061988 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
45062003 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:45068164 original size:49 final size:49
Alignment explanation
Indices: 45068089--45068318 Score: 202
Period size: 49 Copynumber: 4.7 Consensus size: 49
45068079 TGTGTGTGCT
*
45068089 AGTGTAAGACTTGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCC
* * * * *
45068138 AGTGTAAGACCTGTCTAGGACTTGGCACCGACA-CAGATA-AGTGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCATC-GATAGA-TGAGAGCC
* * * *
45068187 AGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGA-CGTATG-GAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAG-ATGAG-AGCC
* * * * * *
45068236 AGTGTAAGACCTATCTGGGGCATGGCATCGACTTAGAT-G-TAAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCC
* * *
45068283 AGTGTAAGACCATGTTTGGAATATGGCATCGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGGCATC
45068319 ATACCATGTT
Statistics
Matches: 143, Mismatches: 29, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
47 15 0.10
48 20 0.14
49 106 0.74
50 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (49 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCC
Found at i:45068262 original size:98 final size:96
Alignment explanation
Indices: 45068086--45068318 Score: 245
Period size: 98 Copynumber: 2.4 Consensus size: 96
45068076 TGATGTGTGT
* * *
45068086 GCTAGTGTAAGACTTGTCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTGTAAGACCTG
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTGTAAGACCTA
* *
45068151 TCTAGGACTTGGCACCGACACAGATAAGTGAGA
66 TCTAGGACATGGCACCGACACAGAT--GTAAGA
* * *
45068184 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGA-CGTATG-GAAGTCAGTGTAAGACC
1 GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCATCGATAG-ATGAG-AGCCAGTGTAAGACC
* * * **
45068247 TATCTGGGGCATGGCATCGACTTAGATGTAAGA
64 TATCTAGGACATGGCACCGACACAGATGTAAGA
* * * * *
45068280 GCCAGTGTAAGACCATGTTTGGAATATGGCATCGGCATC
1 GCTAGTGTAAGACC-TATCTGGGACATGGCATCGGCATC
45068319 ATACCATGTT
Statistics
Matches: 113, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
96 18 0.16
97 21 0.19
98 74 0.65
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (96 bp):
GCTAGTGTAAGACCTATCTGGGACATGGCATCGGCATCGATAGATGAGAGCCAGTGTAAGACCTA
TCTAGGACATGGCACCGACACAGATGTAAGA
Found at i:45068327 original size:30 final size:30
Alignment explanation
Indices: 45068291--45068362 Score: 117
Period size: 30 Copynumber: 2.3 Consensus size: 30
45068281 CCAGTGTAAG
*
45068291 ACCATGTTTGGAATATGGCATCGGCATCAT
1 ACCATGTTTGGAATATGACATCGGCATCAT
45068321 ACCATGTTTGGAATATGACATCGGCATCAT
1 ACCATGTTTGGAATATGACATCGGCATCAT
45068351 ACCCTATGTTTG
1 A-CC-ATGTTTG
45068363 AGACTTAGTG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 30 0.77
31 2 0.05
32 7 0.18
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (30 bp):
ACCATGTTTGGAATATGACATCGGCATCAT
Found at i:45075959 original size:49 final size:47
Alignment explanation
Indices: 45075830--45076003 Score: 165
Period size: 49 Copynumber: 3.6 Consensus size: 47
45075820 TGATGTGTGT
* * * *
45075830 GCTAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGC-CTC-AGACATGA-A
* **
45075879 GCTAGTGTAAGACCTGTCTGGAACACAGCATCGGCCTCAAGACATGCAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTC-AGACATG-AA
45075928 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTC-GACGTATGGAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAGAC--AT-GAA
* *
45075977 G-TCAGTGTAAGACCTTTCTGAGACATG
1 GCT-AGTGTAAGACCTGTCTGGGACATG
45076004 CTATCGACTT
Statistics
Matches: 106, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
47 3 0.03
48 2 0.02
49 99 0.93
50 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCAGACATGAA
Found at i:45081286 original size:30 final size:30
Alignment explanation
Indices: 45081250--45081311 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
45081240 TGTAGTGATA
*
45081250 ATTATGTATATGATCCTCAAAATTGAGATC
1 ATTATGTATACGATCCTCAAAATTGAGATC
* *
45081280 ATTATGTATACGATCCTCAGACTTGAGATC
1 ATTATGTATACGATCCTCAAAATTGAGATC
45081310 AT
1 AT
45081312 CATTGCTGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (30 bp):
ATTATGTATACGATCCTCAAAATTGAGATC
Found at i:45082819 original size:18 final size:19
Alignment explanation
Indices: 45082796--45082833 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
45082786 TAGTTTTCTT
*
45082796 AAAATGGAAATG-GAAATG
1 AAAATGAAAATGAGAAATG
45082814 AAAATGAAAATGAGAAATG
1 AAAATGAAAATGAGAAATG
45082833 A
1 A
45082834 TTCATTTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.24, T:0.16
Consensus pattern (19 bp):
AAAATGAAAATGAGAAATG
Found at i:45085373 original size:24 final size:24
Alignment explanation
Indices: 45085346--45085392 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
45085336 TGGAAATTTT
45085346 ACAAATTAAACATATAAAATAAAG
1 ACAAATTAAACATATAAAATAAAG
*
45085370 ACAAATTAAACATATAAATTAAA
1 ACAAATTAAACATATAAAATAAA
45085393 CATAAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (24 bp):
ACAAATTAAACATATAAAATAAAG
Found at i:45085390 original size:13 final size:13
Alignment explanation
Indices: 45085348--45085396 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
45085338 GAAATTTTAC
45085348 AAATTAAACATAT
1 AAATTAAACATAT
* * *
45085361 AAAAT-AA-AGAC
1 AAATTAAACATAT
45085372 AAATTAAACATAT
1 AAATTAAACATAT
45085385 AAATTAAACATA
1 AAATTAAACATA
45085397 AGAAAATCAT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
11 6 0.21
12 4 0.14
13 18 0.64
ACGTcount: A:0.65, C:0.08, G:0.02, T:0.24
Consensus pattern (13 bp):
AAATTAAACATAT
Found at i:45086322 original size:53 final size:53
Alignment explanation
Indices: 45086242--45086436 Score: 148
Period size: 47 Copynumber: 3.9 Consensus size: 53
45086232 CCATGACAAC
* * *
45086242 ATGTGATATGTGATTTCTGTATAAGACCATAGCTGGGCTATGGCATCGGAAAG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGGAAAG
**
45086295 ATGTGACTATGTG-CTTCCGTATAAGACCATATTTGGGATATGGCATC-G---G
1 ATGTGA-TATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGGAAAG
* * * **
45086344 -TATGATATGTG-CTACTGTATAAGACCATATTTGGGATATGGCATC----AG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGGAAAG
* * * * *
45086391 -TGTGATATGTGA--TCTGTGTAAGACCATGGCTGGGCTATGGCTTCGG
1 ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGG
45086437 TGTGTAATAT
Statistics
Matches: 121, Mismatches: 16, Indels: 15
0.80 0.11 0.10
Matches are distributed among these distances:
46 25 0.21
47 49 0.40
48 4 0.03
49 1 0.01
52 1 0.01
53 35 0.29
54 6 0.05
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.32
Consensus pattern (53 bp):
ATGTGATATGTGACTTCCGTATAAGACCATAGCTGGGATATGGCATCGGAAAG
Found at i:45086371 original size:47 final size:46
Alignment explanation
Indices: 45086257--45086417 Score: 169
Period size: 47 Copynumber: 3.3 Consensus size: 46
45086247 ATATGTGATT
** * *
45086257 TCTGTATAAGACCATAGCTGGGCTATGGCATCGGAAAGATGTGACTATGTGC
1 TCTGTATAAGACCATATTTGGGATATGGCATC----AG-TATGA-TATGTGC
* *
45086309 TTCCGTATAAGACCATATTTGGGATATGGCATCGGTATGATATGTGC
1 -TCTGTATAAGACCATATTTGGGATATGGCATCAGTATGATATGTGC
* *
45086356 TACTGTATAAGACCATATTTGGGATATGGCATCAGTGTGATATGTGA
1 T-CTGTATAAGACCATATTTGGGATATGGCATCAGTATGATATGTGC
*
45086403 TCTGTGTAAGACCAT
1 TCTGTATAAGACCAT
45086418 GGCTGGGCTA
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
46 14 0.15
47 49 0.51
48 4 0.04
49 1 0.01
53 28 0.29
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (46 bp):
TCTGTATAAGACCATATTTGGGATATGGCATCAGTATGATATGTGC
Found at i:45095299 original size:17 final size:17
Alignment explanation
Indices: 45095252--45095301 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
45095242 CCAAATAGGA
45095252 TTTTC-TTCCT-TTTCTC
1 TTTTCTTTCCTCTTT-TC
**
45095268 TGTTTCTTTTTTCTTTTC
1 T-TTTCTTTCCTCTTTTC
45095286 TTTTCTTTCCTCTTTT
1 TTTTCTTTCCTCTTTT
45095302 TTACATCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
16 1 0.04
17 17 0.63
18 6 0.22
19 3 0.11
ACGTcount: A:0.00, C:0.24, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTCTTTCCTCTTTTC
Found at i:45097916 original size:39 final size:40
Alignment explanation
Indices: 45097858--45097958 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
45097848 AAATTGAATG
* *
45097858 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
45097897 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
45097937 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
45097959 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:45097951 original size:40 final size:40
Alignment explanation
Indices: 45097858--45098040 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
45097848 AAATTGAATG
* * * * *
45097858 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45097897 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45097937 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
45097977 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
45098017 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
45098041 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:45098065 original size:80 final size:80
Alignment explanation
Indices: 45097899--45098085 Score: 189
Period size: 80 Copynumber: 2.3 Consensus size: 80
45097889 CTGAAATTAT
* * *
45097899 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
* *
45097964 CGTGCAAGTTGTTAA
66 CGTGCAAGTTATCAA
* * * * * *
45097979 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGCCT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCT-ATATCCGGGCTAAGACCCGAAGGCAT
* **
45098043 TGGTGCGGGTTATCATA
65 TCGTGCAAGTTATCA-A
* * *
45098060 A-CCGGGCTATGTCCCGAAGGCGATTG
1 ATCCGGGCTAAGACCCGAAGGCAATTG
45098086 AACGAGTAGC
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
79 1 0.01
80 84 0.97
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAATAGCTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTATCAA
Found at i:45105996 original size:39 final size:40
Alignment explanation
Indices: 45105938--45106038 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
45105928 AAATTGAATG
* *
45105938 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
* * * * *
45105977 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
45106017 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
45106039 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 29 0.55
40 24 0.45
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTAGAAACT
Found at i:45106031 original size:40 final size:40
Alignment explanation
Indices: 45105938--45106120 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
45105928 AAATTGAATG
* * * * *
45105938 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45105977 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
45106017 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
45106057 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
45106097 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
45106121 CTTGGTGCGG
Statistics
Matches: 121, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
39 32 0.26
40 87 0.72
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:45115876 original size:15 final size:15
Alignment explanation
Indices: 45115856--45115884 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45115846 AAAGAAAAAC
45115856 AAAAAGAAAAGGAAT
1 AAAAAGAAAAGGAAT
45115871 AAAAAGAAAAGGAA
1 AAAAAGAAAAGGAA
45115885 GATGAGAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (15 bp):
AAAAAGAAAAGGAAT
Found at i:45121225 original size:8 final size:8
Alignment explanation
Indices: 45121212--45121246 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
45121202 GTCATGGCCC
45121212 TTTCTTTT
1 TTTCTTTT
45121220 TTTCTTTTT
1 TTTC-TTTT
45121229 TTTCTTTT
1 TTTCTTTT
45121237 TTT-TTTT
1 TTTCTTTT
45121244 TTT
1 TTT
45121247 TGGGGGGGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.27
8 11 0.42
9 8 0.31
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (8 bp):
TTTCTTTT
Found at i:45121230 original size:9 final size:9
Alignment explanation
Indices: 45121212--45121247 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
45121202 GTCATGGCCC
45121212 TTTC-TTTT
1 TTTCTTTTT
45121220 TTTCTTTTT
1 TTTCTTTTT
45121229 TTTCTTTTT
1 TTTCTTTTT
45121238 TTT-TTTTT
1 TTTCTTTTT
45121246 TT
1 TT
45121248 GGGGGGGGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 11 0.41
9 16 0.59
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:45121234 original size:17 final size:16
Alignment explanation
Indices: 45121212--45121247 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 16
45121202 GTCATGGCCC
45121212 TTTCTTTTTTTCTTTTT
1 TTTCTTTTTTT-TTTTT
45121229 TTTCTTTTTTTTTTTT
1 TTTCTTTTTTTTTTTT
45121245 TTT
1 TTT
45121248 GGGGGGGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (16 bp):
TTTCTTTTTTTTTTTT
Found at i:45130907 original size:26 final size:27
Alignment explanation
Indices: 45130871--45130922 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
45130861 TAAAATAAGG
*
45130871 GTGGAGGGTA-CCCACAGGCGGCACCT
1 GTGGAGGGTACCCCACAGGCGACACCT
45130897 GTGGAGGGTACCCCACAGGCGACACC
1 GTGGAGGGTACCCCACAGGCGACACC
45130923 GATCACTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.21, C:0.33, G:0.37, T:0.10
Consensus pattern (27 bp):
GTGGAGGGTACCCCACAGGCGACACCT
Found at i:45130968 original size:22 final size:22
Alignment explanation
Indices: 45130936--45130977 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
45130926 CACTGCTCTG
*
45130936 CACCGATGGGACTACTCACTAC
1 CACCGACGGGACTACTCACTAC
*
45130958 CACCGACGGGACTGCTCACT
1 CACCGACGGGACTACTCACT
45130978 GCCTTTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.24, C:0.38, G:0.21, T:0.17
Consensus pattern (22 bp):
CACCGACGGGACTACTCACTAC
Found at i:45131083 original size:3 final size:3
Alignment explanation
Indices: 45131065--45131135 Score: 117
Period size: 3 Copynumber: 23.7 Consensus size: 3
45131055 AAGAAAGGGG
*
45131065 GAA GGA GAA G-A GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
45131112 GAA GAA GAA GAA GAA GAA GGAA GA
1 GAA GAA GAA GAA GAA GAA -GAA GA
45131136 GGAGGAGGCG
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 59 0.92
4 3 0.05
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:45131662 original size:14 final size:14
Alignment explanation
Indices: 45131643--45131669 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45131633 CTTAATAGTA
45131643 TATTTTAAAAAATG
1 TATTTTAAAAAATG
45131657 TATTTTAAAAAAT
1 TATTTTAAAAAAT
45131670 CTGAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (14 bp):
TATTTTAAAAAATG
Found at i:45131827 original size:141 final size:143
Alignment explanation
Indices: 45131665--45132834 Score: 1695
Period size: 146 Copynumber: 8.1 Consensus size: 143
45131655 TGTATTTTAA
* * *
45131665 AAAATCTGAAAATAAAAT-AAAAAA-GGCCAAAATCAGAGTTTTTTACTAAATTAATATAAATAT
1 AAAATCCGAAAATAAAATAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
*
45131728 ACTAAAATAATACATATGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGTA
66 ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGTA
*
45131793 TATTTTGAAAAAT
131 TATTTTAAAAAAT
45131806 AAAATCCGAAAATAAAATAAAAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
1 AAAATCCGAAAATAAAAT--AAAA-AAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
* * *
45131871 AAAACTAAAACAAAACATTTGAATCATTATGTACTAAAATAATATAAAAAATAAAATACGAAAAT
63 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAAT
*
45131936 ATTATATTTTAAAAAAT
127 AGTATATTTTAAAAAAT
* * * *
45131953 AAAATTCGGGAAAACAAAATAAAAAAA-GGCCAAAATCACAGATTTTTACTAAATTAATATAAAA
1 AAAA-TC-CGAAAATAAAATAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAA
* * *
45132017 AAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAACAAAATACGAAAATAA
64 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAG
45132080 TATATTTTAAAAAAT
129 TATATTTTAAAAAAT
* * **
45132095 AAAATCCAAAAATAAAA-ATAAAAAAGGGCCAAAATCAGAGTTTTTTTTTAAATTAATATAAAAA
1 AAAATCCGAAAATAAAATA-AAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
45132159 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAG
65 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAATAG
45132224 TATATTTTAAAAAAT
129 TATATTTTAAAAAAT
* * * * * *
45132239 AAAATCCGAAAACAAAATGAAAAAAGGGCCAAAATCACAGATTTTTGCTAAATTAATAT-AAAAA
1 AAAATCCGAAAATAAAATAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
45132303 ACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAATAAAA-ACGAAAATAGT
66 ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATA-AAAAAATAAAATACGAAAATAGT
45132365 ATATTTTAAAAAAT
130 ATATTTTAAAAAAT
* * *
45132379 AAAATCC-AAAATAAAA-ATAAAAAGGGCCAAAATCAGAGTTTTTTTCTAAATTAATATAAAAAA
1 AAAATCCGAAAATAAAATAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
45132442 ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATAC-AAAATAG
66 ACTAAAATAATACATTTGAAACATTATGTACTAAAAT-A-ATAAAAAAATAAAATACGAAAATAG
*
45132506 TATATTTTAAAAAGT
129 TATATTTTAAAAAAT
* *
45132521 AAAATCCGAAAATAAAATAAAAAATAAACGGCCAGAATCAGAGTTTTTTATTAAATTAATAT-AA
1 AAAATCCGAAAATAAAAT--AAAA-AAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
*
45132585 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAAATA
63 AAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATA
*
45132650 GTATATTTTAAAAAGT
128 GTATATTTTAAAAAAT
* * *
45132666 AAAATCCGAAAATAAAATAAAAAAACAAACAGCCAAAATTAGAGTTTTTTATTAAATTAATATAA
1 AAAATCCGAAAATAAAAT---AAAA-AAACGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-A
* *
45132731 AAAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATAAAATACGAAA
61 AAAAA-ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAA
*
45132796 ATAATATATTTTAAAAAAT
125 ATAGTATATTTTAAAAAAT
45132815 -AAATCCGAAAATAAAATAAA
1 AAAATCCGAAAATAAAATAAA
45132835 TACCAAAATA
Statistics
Matches: 943, Mismatches: 56, Indels: 56
0.89 0.05 0.05
Matches are distributed among these distances:
138 36 0.04
139 28 0.03
140 46 0.05
141 126 0.13
142 78 0.08
143 82 0.09
144 104 0.11
145 96 0.10
146 162 0.17
147 76 0.08
148 24 0.03
149 85 0.09
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (143 bp):
AAAATCCGAAAATAAAATAAAAAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAAA
ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAAAAAAATAAAATACGAAAATAGTA
TATTTTAAAAAAT
Found at i:45132220 original size:25 final size:27
Alignment explanation
Indices: 45132192--45132250 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 27
45132182 ATTATGTACT
45132192 AAAATA-ATA-TAAAAAATAAAATACG
1 AAAATAGATATTAAAAAATAAAATACG
*
45132217 AAAATAGTATATTTTAAAAAATAAAATCCG
1 AAAATAG-ATA--TTAAAAAATAAAATACG
45132247 AAAA
1 AAAA
45132251 CAAAATGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 6 0.21
27 3 0.11
30 19 0.68
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (27 bp):
AAAATAGATATTAAAAAATAAAATACG
Found at i:45132830 original size:17 final size:17
Alignment explanation
Indices: 45132810--45132844 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
45132800 TATATTTTAA
45132810 AAAATAAAT-CCGAAAAT
1 AAAATAAATACC-AAAAT
45132827 AAAATAAATACCAAAAT
1 AAAATAAATACCAAAAT
45132844 A
1 A
45132845 TATTGAACTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.88
18 2 0.12
ACGTcount: A:0.69, C:0.11, G:0.03, T:0.17
Consensus pattern (17 bp):
AAAATAAATACCAAAAT
Found at i:45140407 original size:24 final size:24
Alignment explanation
Indices: 45140375--45140421 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
45140365 TCAATTCACA
*
45140375 TTTGATTGTAGAAGTTAAGCTAAG
1 TTTGATTGTAAAAGTTAAGCTAAG
*
45140399 TTTGATTGTAAAAGTTTAGCTAA
1 TTTGATTGTAAAAGTTAAGCTAA
45140422 AAAACTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.40
Consensus pattern (24 bp):
TTTGATTGTAAAAGTTAAGCTAAG
Found at i:45146085 original size:64 final size:63
Alignment explanation
Indices: 45146010--45146193 Score: 174
Period size: 67 Copynumber: 2.9 Consensus size: 63
45146000 AGACATTATG
* *
45146010 ATGTAGCTAGGTTGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATA
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * * *
45146073 TATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGATAAGAGAGCTACGAGA
1 -ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
45146138 TA
62 TA
* * * * *
45146140 A-GCTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 ATG-TAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
45146194 CGAACTATAT
Statistics
Matches: 95, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 20 0.21
65 9 0.09
66 18 0.19
67 29 0.31
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.24
Consensus pattern (63 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:45147283 original size:2 final size:2
Alignment explanation
Indices: 45147276--45147304 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
45147266 TCATGACATG
45147276 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45147305 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45153998 original size:15 final size:15
Alignment explanation
Indices: 45153978--45154006 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45153968 TCTAAACGTG
45153978 TTATGAGTTTTAATT
1 TTATGAGTTTTAATT
45153993 TTATGAGTTTTAAT
1 TTATGAGTTTTAAT
45154007 CACTAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.59
Consensus pattern (15 bp):
TTATGAGTTTTAATT
Found at i:45155653 original size:27 final size:27
Alignment explanation
Indices: 45155637--45156008 Score: 336
Period size: 27 Copynumber: 13.8 Consensus size: 27
45155627 TTTGGTTTAC
*
45155637 AAAATTACCAAAATACCC-TGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* *
45155663 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * *
45155690 AAAATTACCAAACTACCCCTAATTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* ** * **
45155717 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* *
45155744 AAAATTACCGAAATACCCTTGACTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * * * *
45155771 AAAATTATCGAAATACCATTGATATGA
1 AAAATTACCAAAATACCCTTGATTTGT
*
45155798 AAAATTACCAAAATACCCTT-ACTTTGG
1 AAAATTACCAAAATACCCTTGA-TTTGT
* * *
45155825 AATATTACCAAAATACCATTGATTTGG
1 AAAATTACCAAAATACCCTTGATTTGT
**
45155852 AAAATTA-CAGAAATACCCTTGATTTAA
1 AAAATTACCA-AAATACCCTTGATTTGT
* * **
45155879 AAAATTACAAAAATACCCTTAACTTTCA
1 AAAATTACCAAAATACCCTTGA-TTTGT
* * * *
45155907 AAAATTACAAAAATACCATTGGTTTGC
1 AAAATTACCAAAATACCCTTGATTTGT
*
45155934 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * *
45155961 AAAATTATCGAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTGATTTGT
* * *
45155988 AGATTTACCAAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
45156009 TAGGGTGAAA
Statistics
Matches: 290, Mismatches: 50, Indels: 11
0.83 0.14 0.03
Matches are distributed among these distances:
26 21 0.07
27 244 0.84
28 25 0.09
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTGT
Found at i:45156520 original size:22 final size:22
Alignment explanation
Indices: 45156468--45156532 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
45156458 GCCAATCATT
* *
45156468 CTAATTATGGCTTTGCGCCAAC
1 CTAATTATGGCTCTGTGCCAAC
45156490 CT-ATATATGGCTCTGTGCCAAC
1 CTAAT-TATGGCTCTGTGCCAAC
* *
45156512 CTAATTATGGTTGTGTGCCAA
1 CTAATTATGGCTCTGTGCCAA
45156533 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (22 bp):
CTAATTATGGCTCTGTGCCAAC
Found at i:45156693 original size:32 final size:32
Alignment explanation
Indices: 45156631--45156702 Score: 74
Period size: 32 Copynumber: 2.2 Consensus size: 32
45156621 TACTTTAGTT
* * *
45156631 GATGGCTATGTGCCTAACATAATACAGTTACC
1 GATGGCTTTGTGCCTAAAATAAGACAGTTACC
* *
45156663 GATGGCTTTGTGCC-AATAATAAGACTGTTACT
1 GATGGCTTTGTGCCTAA-AATAAGACAGTTACC
*
45156695 GAAGGCTT
1 GATGGCTT
45156703 AAAGCCGTAT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
31 2 0.06
32 31 0.94
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (32 bp):
GATGGCTTTGTGCCTAAAATAAGACAGTTACC
Found at i:45158159 original size:78 final size:79
Alignment explanation
Indices: 45158019--45158170 Score: 252
Period size: 78 Copynumber: 1.9 Consensus size: 79
45158009 AATTATAACG
45158019 CCCCAAATTTGGGCCTAGAAGTATTGGGCCTTGAGTATGGGTCCATAAGGAAGTTGTATATAAGT
1 CCCCAAATTTGGGCCTAGAAGTATTGGGCCTTGAGTATGGGTCCATAAGGAAGTTGTATATAAGT
45158084 ATTTAATTGTGACT
66 ATTTAATTGTGACT
* * * * *
45158098 CCCCGAATTTGGGCCTA-AAGTATTGGGCTTTGAGTATGGGTCCGTAAGGAGGTTGTCTATAAGT
1 CCCCAAATTTGGGCCTAGAAGTATTGGGCCTTGAGTATGGGTCCATAAGGAAGTTGTATATAAGT
45158162 ATTTAATTG
66 ATTTAATTG
45158171 CGCAAGGAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 52 0.76
79 16 0.24
ACGTcount: A:0.26, C:0.14, G:0.27, T:0.34
Consensus pattern (79 bp):
CCCCAAATTTGGGCCTAGAAGTATTGGGCCTTGAGTATGGGTCCATAAGGAAGTTGTATATAAGT
ATTTAATTGTGACT
Found at i:45159242 original size:27 final size:27
Alignment explanation
Indices: 45159212--45159529 Score: 201
Period size: 27 Copynumber: 11.7 Consensus size: 27
45159202 TTTGGTTTAT
* * *
45159212 AAAATTACCAAAATACCCTCAATTAGC
1 AAAATTACCAAAATACCCTTAATTTGG
* ** *
45159239 AAAATTATCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCTTAATTTGG
* * * *
45159266 AAAATTGCCAAAATACCATTGATTTATG
1 AAAATTACCAAAATACCCTTAATTT-GG
** * * * *
45159294 -AAATTACTGAAATATCCTTGACTTGT
1 AAAATTACCAAAATACCCTTAATTTGG
* *
45159320 AAAATTACCGAAATACCCTTGATTTGG
1 AAAATTACCAAAATACCCTTAATTTGG
* *
45159347 AAAATTACCGAAATACCCTTGATTTGG
1 AAAATTACCAAAATACCCTTAATTTGG
* *
45159374 AAAATTACCAAAATACCATTGATTTGG
1 AAAATTACCAAAATACCCTTAATTTGG
* **
45159401 AAAATTACAAAAATACCCTTAATTTAC
1 AAAATTACCAAAATACCCTTAATTTGG
* * **
45159428 AAAATTA-CAGAAATACCATTGACTTTAA
1 AAAATTACCA-AAATACCCTT-AATTTGG
* ** *
45159456 AAAATTA-CAGAAATACCATTGGTTTGT
1 AAAATTACCA-AAATACCCTTAATTTGG
** * * *
45159483 AAAATTACTGAAATAACCTTGATTTGT
1 AAAATTACCAAAATACCCTTAATTTGG
* * *
45159510 AGATTTACCAAAACACCCTT
1 AAAATTACCAAAATACCCTT
45159530 GTAGGGTGAA
Statistics
Matches: 236, Mismatches: 50, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.00
27 210 0.89
28 25 0.11
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTAATTTGG
Found at i:45159298 original size:81 final size:80
Alignment explanation
Indices: 45159207--45159472 Score: 223
Period size: 81 Copynumber: 3.3 Consensus size: 80
45159197 ATACATTTGG
* * * *
45159207 TTTATAAAATTACCAAAATACCCTCAATTAGCAAAATTATCAAAATACCCTTGGTTTGTAAAATT
1 TTTATGAAATTACCAAAATACCCTCAATT-GCAAAATTACCAAAATACCCTTGATTTGGAAAATT
*
45159272 GCCAAAATACCATTGA
65 ACCAAAATACCATTGA
** * * * * *
45159288 TTTATGAAATTACTGAAATATCCTTGACTTGTAAAATTACCGAAATACCCTTGATTTGGAAAATT
1 TTTATGAAATTACCAAAATA-CCCTCAATTGCAAAATTACCAAAATACCCTTGATTTGGAAAATT
* *
45159353 ACCGAAATACCCTTGA
65 ACCAAAATACCATTGA
* * * * * * * **
45159369 TTT-GGAAAATTACCAAAATACCATTGATTTGGAAAATTACAAAAATACCCTTAATTTACAAAAT
1 TTTATG-AAATTACCAAAATACC-CTCAATTGCAAAATTACCAAAATACCCTTGATTTGGAAAAT
45159433 TA-CAGAAATACCATTGA
64 TACCA-AAATACCATTGA
**
45159450 CTTTAAAAAATTA-CAGAAATACC
1 -TTTATGAAATTACCA-AAATACC
45159473 ATTGGTTTGT
Statistics
Matches: 150, Mismatches: 28, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
80 4 0.03
81 124 0.83
82 22 0.15
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (80 bp):
TTTATGAAATTACCAAAATACCCTCAATTGCAAAATTACCAAAATACCCTTGATTTGGAAAATTA
CCAAAATACCATTGA
Found at i:45159824 original size:41 final size:41
Alignment explanation
Indices: 45159767--45159845 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 41
45159757 GGAGGAAGAA
*
45159767 ATTGAGAATCGTATGGTTGCTTGACGA-TCGTGGATCCATCG
1 ATTGAGAATCGCATGGTTGCTTGACGACT-GTGGATCCATCG
* *
45159808 ATTGAGGATCGCATGGTTGCTTGATGACTGTGGATCCA
1 ATTGAGAATCGCATGGTTGCTTGACGACTGTGGATCCA
45159846 CCGGTGGCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 33 0.97
42 1 0.03
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (41 bp):
ATTGAGAATCGCATGGTTGCTTGACGACTGTGGATCCATCG
Found at i:45160050 original size:22 final size:22
Alignment explanation
Indices: 45159990--45160054 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
45159980 GGCAATCATT
* *
45159990 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
45160012 CT-ACATATAGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
45160034 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
45160055 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:45163229 original size:16 final size:15
Alignment explanation
Indices: 45163210--45163248 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
45163200 TAGTATTATA
45163210 TTATCTTATAAAAAAT
1 TTATCTT-TAAAAAAT
*
45163226 TTATGTTTAAAAAAT
1 TTATCTTTAAAAAAT
*
45163241 TTAACTTT
1 TTATCTTT
45163249 TGTTTAGAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.49
Consensus pattern (15 bp):
TTATCTTTAAAAAAT
Found at i:45164581 original size:33 final size:33
Alignment explanation
Indices: 45164539--45164604 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
45164529 CCAAATCTTG
45164539 TTTCCTTTTTATGGTGATTCCATATTGGAAGAT
1 TTTCCTTTTTATGGTGATTCCATATTGGAAGAT
45164572 TTTCCTTTTTATGGTGATTCCATATTGGAAGAT
1 TTTCCTTTTTATGGTGATTCCATATTGGAAGAT
45164605 CTGGTGGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCCTTTTTATGGTGATTCCATATTGGAAGAT
Found at i:45165525 original size:17 final size:18
Alignment explanation
Indices: 45165503--45165543 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
45165493 CAACTTAAGT
45165503 TGAGCTCATAG-CTTT-GA
1 TGAGCTCAT-GTCTTTGGA
*
45165520 TGAGCTTATGTCTTTGGA
1 TGAGCTCATGTCTTTGGA
45165538 TGAGCT
1 TGAGCT
45165544 TGCAGCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 12 0.57
18 8 0.38
ACGTcount: A:0.20, C:0.15, G:0.27, T:0.39
Consensus pattern (18 bp):
TGAGCTCATGTCTTTGGA
Found at i:45170346 original size:46 final size:45
Alignment explanation
Indices: 45170199--45170409 Score: 187
Period size: 46 Copynumber: 4.5 Consensus size: 45
45170189 ATTGTTGGCT
* * *
45170199 AGTGTAAGAGATGTCTGGGACATACATCAACCACATTAG--GAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-ACCTC--TAGATGAGAGCC
* * *
45170245 AGTATAAGACCATGTCTGGGACATGGCATCAGCAT-TGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCA-CCTCT-AGATGAGAGCC
*
45170293 AGTGTAAGACATGTCTGGGACATGCATCGACCTCTAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-ACCTCTAGATG-AGAGCC
* * * *
45170339 AGTGTAAGACATGTCTGGGACATGCATCAACTACAAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCACCT-CTAGATGAGAGCC
*
45170385 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
45170410 GCATTGACAC
Statistics
Matches: 138, Mismatches: 15, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
45 5 0.04
46 69 0.50
47 45 0.33
48 19 0.14
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCACCTCTAGATGAGAGCC
Found at i:45171405 original size:28 final size:29
Alignment explanation
Indices: 45171365--45171420 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
45171355 ACACGGGCTA
*
45171365 GGACACGGGCGTGT-TGTGGCCGTGTGAG
1 GGACACGGGCGTGTGTCTGGCCGTGTGAG
45171393 GGACACGGGCGTGTGTCTGGCCGTGTGA
1 GGACACGGGCGTGTGTCTGGCCGTGTGA
45171421 AAACCCCTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.11, C:0.20, G:0.48, T:0.21
Consensus pattern (29 bp):
GGACACGGGCGTGTGTCTGGCCGTGTGAG
Found at i:45177920 original size:47 final size:48
Alignment explanation
Indices: 45177850--45178077 Score: 186
Period size: 47 Copynumber: 4.9 Consensus size: 48
45177840 CAGCCACATT
* *
45177850 ATGAGAGCCCGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAG
* * ** *
45177898 ATGAGAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAG
* * *
45177944 ACGTA-AGCCAGTGTAGGA-CATGTCTGGGACAT-GTATCGGCTA-CGAG
1 ATG-AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATCGAG
* * * *
45177990 ATGATAGTCAGTGTAAGACCATGTCTGGGACATGACATC--TACTTGAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-TCGAG
*** * *
45178037 AT-ATGAGCCAGTGTAAGATTGTGTTTGGGATATGGCATCGG
1 ATGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
45178078 CACTTTACCC
Statistics
Matches: 141, Mismatches: 29, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 59 0.42
47 60 0.43
48 19 0.13
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (48 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAG
Found at i:45177958 original size:46 final size:46
Alignment explanation
Indices: 45177813--45178028 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 46
45177803 CTTGTTGGCT
* * * * * * *
45177813 AGTGTAAGAGATGTCTGAGACATGCATCAGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-AACGATAGCC
* * * * * *
45177859 CGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAAACGATAGCC
*
45177907 AGTGTAAGACATGTTTGGGACATGCATCGGCCT-CGAAACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAAACGAT-AGCC
* * * * *
45177953 AGTGTAGGACATGTCTGGGACATGTATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAAACGATAGCC
45177999 AGTGTAAGACCATGTCTGGGACATGACATC
1 AGTGTAAGA-CATGTCTGGGACATG-CATC
45178029 TACTTGAGAT
Statistics
Matches: 136, Mismatches: 23, Indels: 20
0.76 0.13 0.11
Matches are distributed among these distances:
45 2 0.01
46 65 0.48
47 42 0.31
48 26 0.19
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAAACGATAGCC
Found at i:45178019 original size:93 final size:95
Alignment explanation
Indices: 45177855--45178028 Score: 232
Period size: 93 Copynumber: 1.9 Consensus size: 95
45177845 ACATTATGAG
* *
45177855 AGCCCGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGAGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAGATGAGAGCTAGTGTAAGACATG
*
45177920 TTTGGGACATG-CATCGGCCTCGAAACGTA
66 TCTGGGACATGACATCGGCCTCGAAACGTA
* * *
45177949 AGCCAGTGTAGGA-CATGTCTGGGACAT-GTATCGGCTA-CGAGATGATAG-TCAGTGTAAGACC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATCGAGATGAGAGCT-AGTGTAAGA-C
45178010 ATGTCTGGGACATGACATC
63 ATGTCTGGGACATGACATC
45178029 TACTTGAGAT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
91 1 0.01
92 24 0.34
93 30 0.43
94 15 0.21
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAGATGAGAGCTAGTGTAAGACATG
TCTGGGACATGACATCGGCCTCGAAACGTA
Found at i:45178046 original size:93 final size:94
Alignment explanation
Indices: 45177854--45178077 Score: 215
Period size: 93 Copynumber: 2.4 Consensus size: 94
45177844 CACATTATGA
* *
45177854 GAGCCCGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGATGAGAGCTAGTGTAAGACAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAGATGAGAGCTAGTGTAAGACAT
* * *
45177919 GTTTGGGACATGCATCGGCCTCGAAACGT
66 GTCTGGGACATGCATCGGACTCGAAACAT
* * * *
45177948 AAGCCAGTGTAGGA-CATGTCTGGGACAT-GTATCGGCTA-CGAGATGATAG-TCAGTGTAAGAC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATCGAGATGAGAGCT-AGTGTAAGA-
* * * *
45178009 CATGTCTGGGACATGACATC-TACTTGAGATAT
63 CATGTCTGGGACATG-CATCGGACTCGAAACAT
*** * *
45178041 GAGCCAGTGTAAGATTGTGTTTGGGATATGGCATCGG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
45178078 CACTTTACCC
Statistics
Matches: 104, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
91 1 0.01
92 24 0.23
93 48 0.46
94 25 0.24
95 6 0.06
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (94 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATCGAGATGAGAGCTAGTGTAAGACAT
GTCTGGGACATGCATCGGACTCGAAACAT
Found at i:45180385 original size:28 final size:28
Alignment explanation
Indices: 45180350--45180405 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
45180340 CAAAGAGTTC
*
45180350 AAGCGAGCCATATTAGGATGCTTACAAA
1 AAGCGAGCCATATTAGGACGCTTACAAA
45180378 AAGCGAGCCATATTAGGACGCTTACAAA
1 AAGCGAGCCATATTAGGACGCTTACAAA
45180406 GAGCTACGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (28 bp):
AAGCGAGCCATATTAGGACGCTTACAAA
Found at i:45181086 original size:21 final size:22
Alignment explanation
Indices: 45181041--45181087 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
45181031 TATACGAGTA
* *
45181041 AATTTTAACATCAATTTAATGC
1 AATTTAAACATCAATTTAATCC
*
45181063 AATTTAAAC-TCAATTTAGTCC
1 AATTTAAACATCAATTTAATCC
45181084 AATT
1 AATT
45181088 CGCATCTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.40, C:0.15, G:0.04, T:0.40
Consensus pattern (22 bp):
AATTTAAACATCAATTTAATCC
Found at i:45181216 original size:15 final size:15
Alignment explanation
Indices: 45181196--45181224 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
45181186 ATTCCAAGCC
45181196 TAGCCAATTTTTACG
1 TAGCCAATTTTTACG
45181211 TAGCCAATTTTTAC
1 TAGCCAATTTTTAC
45181225 ATGTCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (15 bp):
TAGCCAATTTTTACG
Found at i:45188553 original size:21 final size:21
Alignment explanation
Indices: 45188529--45188569 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45188519 TCTTCAGTCT
*
45188529 TGAT-GATGAATCTGGCTTCTG
1 TGATGGATCAATC-GGCTTCTG
45188550 TGATGGATCAATCGGCTTCT
1 TGATGGATCAATCGGCTTCT
45188570 TGGAGTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (21 bp):
TGATGGATCAATCGGCTTCTG
Found at i:45190433 original size:26 final size:26
Alignment explanation
Indices: 45190400--45190462 Score: 99
Period size: 26 Copynumber: 2.4 Consensus size: 26
45190390 ACTCAACTCA
45190400 ACGAGCTCGGATGCCTTTTACATCTC
1 ACGAGCTCGGATGCCTTTTACATCTC
* *
45190426 ACGAGCTCAGATGCCTTTTTCATCTC
1 ACGAGCTCGGATGCCTTTTACATCTC
*
45190452 ACGAACTCGGA
1 ACGAGCTCGGA
45190463 CTCAACTCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (26 bp):
ACGAGCTCGGATGCCTTTTACATCTC
Found at i:45194387 original size:93 final size:93
Alignment explanation
Indices: 45194275--45194445 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
45194265 GCCCATAAGT
* *
45194275 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45194340 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45194368 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
**
45194433 TTAGTTCGGATGC
66 CGAGTTCGGATGC
45194446 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45194442 original size:46 final size:46
Alignment explanation
Indices: 45194267--45194442 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
45194257 TGTAACCCGC
* * *
45194267 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45194313 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
45194363 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
**
45194406 CCATAAGTGAACTCGGACTCAACTCAATTAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45194443 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45196401 original size:30 final size:30
Alignment explanation
Indices: 45196357--45196445 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
45196347 CAAAGATAAC
45196357 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
45196386 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
45196416 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
45196446 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:45196405 original size:15 final size:15
Alignment explanation
Indices: 45196357--45196436 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
45196347 CAAAGATAAC
*
45196357 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
45196371 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
45196386 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
45196401 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
45196416 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
45196431 AAGAAA
1 AAGAAA
45196437 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:45196445 original size:15 final size:15
Alignment explanation
Indices: 45196368--45196445 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
45196358 AGAAAACCGA
45196368 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
45196383 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
45196397 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
45196412 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
45196428 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
45196443 ATA
1 ATA
45196446 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:45199470 original size:93 final size:93
Alignment explanation
Indices: 45199358--45199528 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45199348 GCCCATAAGT
* *
45199358 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45199423 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
45199451 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45199516 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45199529 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45199525 original size:46 final size:46
Alignment explanation
Indices: 45199350--45199525 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
45199340 TGTAACCCGC
* * *
45199350 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
45199396 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
45199446 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
45199489 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45199526 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45202200 original size:21 final size:21
Alignment explanation
Indices: 45202176--45202219 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
45202166 CATACCTTAC
45202176 AGGAAAAACAATTGTATGCTA
1 AGGAAAAACAATTGTATGCTA
* *
45202197 AGGAAAAGCAATTGTGTGCTA
1 AGGAAAAACAATTGTATGCTA
45202218 AG
1 AG
45202220 TTTAGCAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.09, G:0.25, T:0.23
Consensus pattern (21 bp):
AGGAAAAACAATTGTATGCTA
Found at i:45209443 original size:18 final size:18
Alignment explanation
Indices: 45209415--45209450 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
45209405 ACATGGCCAA
45209415 GGCCAACATGGGCCGTGTG
1 GGCCAACATGGG-CGTGTG
45209434 GGCC-ACATGGGCGTGTG
1 GGCCAACATGGGCGTGTG
45209451 AGACCACACG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.14, C:0.25, G:0.44, T:0.17
Consensus pattern (18 bp):
GGCCAACATGGGCGTGTG
Found at i:45209457 original size:18 final size:17
Alignment explanation
Indices: 45209420--45209463 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
45209410 GCCAAGGCCA
*
45209420 ACATGGGCCGTGTGGGCC
1 ACATGGG-CGTGTGGACC
45209438 ACATGGGCGTGTGAGACC
1 ACATGGGCGTGTG-GACC
*
45209456 ACACGGGC
1 ACATGGGC
45209464 AGGCCACATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.18, C:0.27, G:0.41, T:0.14
Consensus pattern (17 bp):
ACATGGGCGTGTGGACC
Found at i:45216323 original size:30 final size:30
Alignment explanation
Indices: 45216287--45216359 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
45216277 GACTTGGGAA
* *
45216287 ACATGCCTATGTGTGTTACTCGTGTGTGAC
1 ACATGCCCATGTGTGTTACCCGTGTGTGAC
* *
45216317 ACATGCCCATGTGTGTTGCCCGTTTGTGAC
1 ACATGCCCATGTGTGTTACCCGTGTGTGAC
**
45216347 ACACACCCATGTG
1 ACATGCCCATGTG
45216360 GCCAAGCTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.18, C:0.26, G:0.25, T:0.32
Consensus pattern (30 bp):
ACATGCCCATGTGTGTTACCCGTGTGTGAC
Found at i:45218073 original size:38 final size:38
Alignment explanation
Indices: 45218031--45218221 Score: 238
Period size: 38 Copynumber: 5.0 Consensus size: 38
45218021 AAATGTAATA
* *
45218031 TTATTCGGGCTATGTGCTTAGCAAGCTTTGTGCCGGTG
1 TTATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTG
*
45218069 TTATTCGGGCTATGTGCCTAGCAGGCTTTGTACCGGTG
1 TTATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTG
* * * * *
45218107 TTATTCGAGCTAGGTGCCTAGCAGGCTTTGGGACAGTG
1 TTATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTG
** * *
45218145 TTATTCGGGCTATGCACCTAGCAGGCTTTGTGCCAGTT
1 TTATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTG
* * * *
45218183 TTATTCAGGCTCTGTGCCTAGCAGGCTTAGTGCTGGTG
1 TTATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTG
45218221 T
1 T
45218222 ATTGAAAATT
Statistics
Matches: 129, Mismatches: 24, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 129 1.00
ACGTcount: A:0.15, C:0.20, G:0.31, T:0.34
Consensus pattern (38 bp):
TTATTCGGGCTATGTGCCTAGCAGGCTTTGTGCCGGTG
Found at i:45219930 original size:12 final size:12
Alignment explanation
Indices: 45219913--45219953 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
45219903 TCTCAAGTCA
45219913 TCATTTCATATC
1 TCATTTCATATC
*
45219925 TCATTTCGTATC
1 TCATTTCATATC
*
45219937 TCATTATCATTTC
1 TCATT-TCATATC
45219950 TCAT
1 TCAT
45219954 CTTTTTCATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.22, C:0.24, G:0.02, T:0.51
Consensus pattern (12 bp):
TCATTTCATATC
Found at i:45220186 original size:33 final size:35
Alignment explanation
Indices: 45220123--45220205 Score: 116
Period size: 33 Copynumber: 2.4 Consensus size: 35
45220113 AATTGGTATT
45220123 CAGTGCCTTATCGGATAAACTGAAGCAAATTGGCACA
1 CAGTGCCTTATCGGAT-AAC-GAAGCAAATTGGCACA
*
45220160 CAGTGCCTTATCGGAT-A-GAAGCAAATTGGCACC
1 CAGTGCCTTATCGGATAACGAAGCAAATTGGCACA
*
45220193 CAGTGCCTCATCG
1 CAGTGCCTTATCG
45220206 ACTCGAGGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
33 27 0.61
35 1 0.02
37 16 0.36
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (35 bp):
CAGTGCCTTATCGGATAACGAAGCAAATTGGCACA
Found at i:45221245 original size:21 final size:23
Alignment explanation
Indices: 45221216--45221257 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
45221206 TAATAAACAT
*
45221216 ACATTTATACA-ATT-TATTATA
1 ACATATATACATATTATATTATA
45221237 ACATATATACATATTATATTA
1 ACATATATACATATTATATTA
45221258 ACATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 3 0.17
23 5 0.28
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (23 bp):
ACATATATACATATTATATTATA
Found at i:45230313 original size:20 final size:19
Alignment explanation
Indices: 45230284--45230328 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
45230274 TTCATTCAAC
*
45230284 TTTCACATCTCAATTCATCA
1 TTTCATATCTCAATTC-TCA
*
45230304 TTTCATATCTCATTTCTCA
1 TTTCATATCTCAATTCTCA
45230323 TTTCAT
1 TTTCAT
45230329 TATTATTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.24, C:0.27, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTCATATCTCAATTCTCA
Found at i:45230557 original size:37 final size:37
Alignment explanation
Indices: 45230502--45230598 Score: 140
Period size: 37 Copynumber: 2.6 Consensus size: 37
45230492 GCACTATATA
* **
45230502 AAATTGGCACCCAATGCCTCATCTGATAAACAGAAGC
1 AAATTGGCACCCAGTGCCTCATCACATAAACAGAAGC
* * *
45230539 AAATTGGCAGCCAGTGCCTCATCACATAGACCGAAGC
1 AAATTGGCACCCAGTGCCTCATCACATAAACAGAAGC
45230576 AAATTGGCACCCAGTGCCTCATC
1 AAATTGGCACCCAGTGCCTCATC
45230599 GACTCGAGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 53 1.00
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.19
Consensus pattern (37 bp):
AAATTGGCACCCAGTGCCTCATCACATAAACAGAAGC
Found at i:45231615 original size:21 final size:23
Alignment explanation
Indices: 45231586--45231627 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
45231576 TAATAAACAT
*
45231586 ACATTTATACA-ATT-TATTATA
1 ACATATATACATATTATATTATA
45231607 ACATATATACATATTATATTA
1 ACATATATACATATTATATTA
45231628 ACATAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 3 0.17
23 5 0.28
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (23 bp):
ACATATATACATATTATATTATA
Found at i:45233213 original size:19 final size:19
Alignment explanation
Indices: 45233189--45233233 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
45233179 AGCTCTCACA
45233189 AGCTTCTGTTCAGCTTTCG
1 AGCTTCTGTTCAGCTTTCG
*
45233208 AGCTTCTGTTTAGCTTTCG
1 AGCTTCTGTTCAGCTTTCG
*
45233227 CGCTTCT
1 AGCTTCT
45233234 ATTGGCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.27, G:0.20, T:0.44
Consensus pattern (19 bp):
AGCTTCTGTTCAGCTTTCG
Found at i:45243022 original size:40 final size:40
Alignment explanation
Indices: 45242973--45243123 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
45242963 ATCACGATTT
*
45242973 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
45243013 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* * *
45243053 GCATAAATGTCC-TCGGGACTTAGCCCGGAT-GTA-GCCACTA
1 GCACAAATG-CCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* *
45243093 GCACAATTGCCTTCGGGTCTTAACCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
45243124 TAATTTCCAG
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 3 0.03
40 87 0.95
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:45243061 original size:80 final size:80
Alignment explanation
Indices: 45242977--45243163 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
45242967 CGATTTGCAC
* * *
45242977 AAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTCGCACGAA-TGCCTTCGGGTCTTAGCCCG
1 AAATGCCTTCGGGACTTAGCCCGGATAGAA-GCACTAGCAC-AATTGCCTTCGGGTCTTAACCCG
*
45243040 GATATAATTACTAGCAT
64 GATATAATTACCAGCAT
*
45243057 AAATGTCC-TCGGGACTTAGCCCGGAT-GTAGCCACTAGCACAATTGCCTTCGGGTCTTAACCCG
1 AAATG-CCTTCGGGACTTAGCCCGGATAGAAG-CACTAGCACAATTGCCTTCGGGTCTTAACCCG
*
45243120 GATATAATTTCCAGCAT
64 GATATAATTACCAGCAT
* * *
45243137 TAACGTCTTCGGGACTTAGCCCGGATA
1 AAATGCCTTCGGGACTTAGCCCGGATA
45243164 TCATTCAAGT
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 5 0.05
80 84 0.91
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
AAATGCCTTCGGGACTTAGCCCGGATAGAAGCACTAGCACAATTGCCTTCGGGTCTTAACCCGGA
TATAATTACCAGCAT
Found at i:45250881 original size:4 final size:4
Alignment explanation
Indices: 45250872--45250897 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
45250862 CCACTTTCTG
45250872 ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT AT
45250898 GGTGGTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:45252029 original size:5 final size:5
Alignment explanation
Indices: 45252015--45252068 Score: 56
Period size: 5 Copynumber: 10.4 Consensus size: 5
45252005 AAGATATGAT
* *
45252015 TTTTA TTTTTA TTTTA -TTTA TTTAAA TATTA TTTTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA TTT-TA TTTTA -TTTTA TTTTA TTTTA
45252062 TTTTA TT
1 TTTTA TT
45252069 ATTAAATTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
4 4 0.10
5 25 0.61
6 12 0.29
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:45252659 original size:6 final size:6
Alignment explanation
Indices: 45252591--45252656 Score: 116
Period size: 6 Copynumber: 11.2 Consensus size: 6
45252581 TCGCTATTAT
45252591 TATTT- TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA
1 TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA TATTTA
*
45252638 TATTTA TATTTA TTTTTA T
1 TATTTA TATTTA TATTTA T
45252657 TTTGTTATTC
Statistics
Matches: 59, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
5 5 0.08
6 54 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TATTTA
Found at i:45252691 original size:49 final size:46
Alignment explanation
Indices: 45252594--45252744 Score: 143
Period size: 46 Copynumber: 3.3 Consensus size: 46
45252584 CTATTATTAT
* * * *
45252594 TTTATTTATATTTATATTTATATTTATAT--TTATATTTATATTTATA
1 TTTA-TTATATTTTTATTTTTATTTATATACTAATA-TTATATTTCTA
* *
45252640 TTTATATTTATTTTTATTTTGTTATTCTA-ATACTATTATTATATTTCTA
1 TTTAT-TATATTTTTA-TTT-TTATT-TATATACTAATATTATATTTCTA
*
45252689 TTTATTATATTTTTATTTTTATTTATATACTAATATTATTTTTC-A
1 TTTATTATATTTTTATTTTTATTTATATACTAATATTATATTTCTA
45252734 -TTATTAT-TTTT
1 TTTATTATATTTT
45252745 CTTATATATT
Statistics
Matches: 89, Mismatches: 9, Indels: 17
0.77 0.08 0.15
Matches are distributed among these distances:
43 4 0.04
44 7 0.08
45 4 0.04
46 33 0.37
47 6 0.07
48 15 0.17
49 17 0.19
50 3 0.03
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (46 bp):
TTTATTATATTTTTATTTTTATTTATATACTAATATTATATTTCTA
Found at i:45252696 original size:18 final size:19
Alignment explanation
Indices: 45252591--45252716 Score: 107
Period size: 18 Copynumber: 7.2 Consensus size: 19
45252581 TCGCTATTAT
45252591 TATTT-TATTTA-TATTTA
1 TATTTATATTTATTATTTA
45252608 TATTTATATTTA-TATTTA
1 TATTTATATTTATTATTTA
45252626 TATTTATATTTA-TATTTA
1 TATTTATATTTATTATTTA
*
45252644 TATTTATTTTTATT-TTGT-
1 TATTTATATTTATTATT-TA
*
45252662 TATTCTA-ATACTATTA-TTA
1 TATT-TATAT-TTATTATTTA
*
45252681 TATTTCTATTTATTA--TA
1 TATTTATATTTATTATTTA
45252698 T-TTT-TATTT-TTATTTA
1 TATTTATATTTATTATTTA
45252714 TAT
1 TAT
45252717 ACTAATATTA
Statistics
Matches: 93, Mismatches: 5, Indels: 22
0.77 0.04 0.18
Matches are distributed among these distances:
14 3 0.03
15 5 0.05
16 6 0.06
17 9 0.10
18 55 0.59
19 15 0.16
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (19 bp):
TATTTATATTTATTATTTA
Found at i:45252753 original size:29 final size:28
Alignment explanation
Indices: 45252674--45252759 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 28
45252664 TTCTAATACT
* * *
45252674 ATTATTATATTTCTATTTATTATATTTTT
1 ATTATTATTTTTCTATATATTAT-TTTTC
*
45252703 ATTTTTATTTATATACTA-ATATTATTTTTC
1 ATTATTATTT-T-T-CTATATATTATTTTTC
45252733 ATTATTATTTTTCTTATATATT-TTTTT
1 ATTATTATTTTTC-TATATATTATTTTT
45252760 ACTCTTGTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
27 1 0.02
28 8 0.17
29 14 0.30
30 14 0.30
31 7 0.15
32 3 0.06
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.69
Consensus pattern (28 bp):
ATTATTATTTTTCTATATATTATTTTTC
Found at i:45252754 original size:26 final size:28
Alignment explanation
Indices: 45252694--45252757 Score: 71
Period size: 30 Copynumber: 2.3 Consensus size: 28
45252684 TTCTATTTAT
*
45252694 TATATTTTTATTTTTATTTATATACTAA
1 TATATTTTTATTATTATTTATATACTAA
*
45252722 TATTATTTTTCATTATTATTT-T-T-CTTA
1 TA-TATTTTT-ATTATTATTTATATACTAA
45252749 TATATTTTT
1 TATATTTTT
45252758 TTACTCTTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 7 0.22
27 5 0.16
28 3 0.09
29 8 0.25
30 9 0.28
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.69
Consensus pattern (28 bp):
TATATTTTTATTATTATTTATATACTAA
Found at i:45252758 original size:14 final size:13
Alignment explanation
Indices: 45252722--45252757 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
45252712 TATATACTAA
45252722 TATTATTTTTCAT
1 TATTATTTTTCAT
45252735 TATTATTTTTC-T
1 TATTATTTTTCAT
45252747 TATATATTTTT
1 TAT-TATTTTT
45252758 TTACTCTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 4 0.18
13 18 0.82
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.72
Consensus pattern (13 bp):
TATTATTTTTCAT
Found at i:45252905 original size:25 final size:24
Alignment explanation
Indices: 45252844--45252906 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
45252834 TATAACGCTC
* *
45252844 ATTTCAATTTTTTATACATTATTT
1 ATTTCAAATTTTTATACATTATGT
*
45252868 ACTTT-AATATTTTTATATATTATGT
1 A-TTTCAA-ATTTTTATACATTATGT
45252893 ATTTCAAACTTTTT
1 ATTTCAAA-TTTTT
45252907 TTTTACACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
24 7 0.22
25 25 0.78
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (24 bp):
ATTTCAAATTTTTATACATTATGT
Found at i:45254320 original size:13 final size:13
Alignment explanation
Indices: 45254302--45254326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45254292 TAATATATTT
45254302 TTTTTATTTTTTA
1 TTTTTATTTTTTA
45254315 TTTTTATTTTTT
1 TTTTTATTTTTT
45254327 GTATTATTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:45254325 original size:22 final size:25
Alignment explanation
Indices: 45254297--45254346 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 25
45254287 TTTATTAATA
*
45254297 TATTTTTTTTATT-TTT-TATT-TT
1 TATTTTTTGTATTATTTATATTATT
45254319 TATTTTTTGTATTATTTATATTATT
1 TATTTTTTGTATTATTTATATTATT
45254344 TAT
1 TAT
45254347 AATGTTCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 12 0.50
23 3 0.12
24 4 0.17
25 5 0.21
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (25 bp):
TATTTTTTGTATTATTTATATTATT
Found at i:45254862 original size:16 final size:16
Alignment explanation
Indices: 45254843--45254874 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45254833 TTCATATAAC
45254843 TTTATGTAAATATTTT
1 TTTATGTAAATATTTT
*
45254859 TTTATGTATATATTTT
1 TTTATGTAAATATTTT
45254875 CTTTTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (16 bp):
TTTATGTAAATATTTT
Found at i:45265514 original size:31 final size:31
Alignment explanation
Indices: 45265479--45265611 Score: 96
Period size: 31 Copynumber: 4.3 Consensus size: 31
45265469 TAGAAATTCT
45265479 ATTAAACTTTCTAAAAGTTTTGAAAATTTCA
1 ATTAAACTTTCTAAAAGTTTTGAAAATTTCA
* * * *
45265510 ATTAAATCCTTC-AAAACTTTTGGAAA-TTCTT
1 ATTAAA-CTTTCTAAAAGTTTTGAAAATTTC-A
* *
45265541 ATT-AA-TTCTCCCAAAAGTTTTAAAAATTTCA
1 ATTAAACTT-T-CTAAAAGTTTTGAAAATTTCA
* ** *
45265572 AGTAAACCATCTAAAA-TTGTTGAAAATTTTA
1 ATTAAACTTTCTAAAAGTT-TTGAAAATTTCA
45265603 ATTAAACTT
1 ATTAAACTT
45265612 CTCTTATTTT
Statistics
Matches: 75, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
28 1 0.01
29 1 0.01
30 8 0.11
31 55 0.73
32 10 0.13
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.40
Consensus pattern (31 bp):
ATTAAACTTTCTAAAAGTTTTGAAAATTTCA
Found at i:45265599 original size:62 final size:62
Alignment explanation
Indices: 45265491--45265607 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 62
45265481 TAAACTTTCT
* * * *
45265491 AAAAGTTTTGAAAATTTCAATTAAATCCTTCAAAACTTTTGGAAATTCTT-ATTAATTCTCCC
1 AAAAGTTTTAAAAATTTCAAGTAAATCCATCAAAACTTTTGAAAATT-TTAATTAATTCTCCC
45265553 AAAAGTTTTAAAAATTTCAAGTAAA-CCATCTAAAA-TTGTTGAAAATTTTAATTAA
1 AAAAGTTTTAAAAATTTCAAGTAAATCCATC-AAAACTT-TTGAAAATTTTAATTAA
45265608 ACTTCTCTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
61 8 0.17
62 40 0.83
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (62 bp):
AAAAGTTTTAAAAATTTCAAGTAAATCCATCAAAACTTTTGAAAATTTTAATTAATTCTCCC
Found at i:45268741 original size:20 final size:21
Alignment explanation
Indices: 45268718--45268756 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
45268708 AAGAAAACAT
45268718 TAATAAATAAAT-GAAATGAG
1 TAATAAATAAATGGAAATGAG
* *
45268738 TAATTAATAGATGGAAATG
1 TAATAAATAAATGGAAATG
45268757 GAAACGTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.54, C:0.00, G:0.18, T:0.28
Consensus pattern (21 bp):
TAATAAATAAATGGAAATGAG
Found at i:45277835 original size:17 final size:17
Alignment explanation
Indices: 45277804--45277853 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
45277794 TGATTGACTT
45277804 TTTTTTGAATGTTTTATA
1 TTTTTTGAAT-TTTTATA
*
45277822 TTTTTT-AATATTTTATT
1 TTTTTTGAAT-TTTTATA
45277839 TTTTTTGAATTTTTA
1 TTTTTTGAATTTTTA
45277854 GAATTTGGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 20 0.69
18 9 0.31
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TTTTTTGAATTTTTATA
Found at i:45278767 original size:41 final size:40
Alignment explanation
Indices: 45278691--45278901 Score: 246
Period size: 41 Copynumber: 5.2 Consensus size: 40
45278681 TAGCGGCGTT
* *
45278691 GCTAAAAACAGAGCAATAGC--CGCATTTTAGTAAAAAACGCC
1 GCTAAAAACAGAGCATTAGCGGCGC-TTTT-G-GAAAAACGCC
* *
45278732 ACTAAAAACATAGCATTAGCGGCGCTTTTGGAAAAACGCC
1 GCTAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
*
45278772 GCTAAAAACCAGAGCATTAGCGGCGCTTTTGGAAATACGCC
1 GCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
* **
45278813 GCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACAAC
1 GCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
* * * *
45278854 GCTAAAATCTAGAGCATTAGCGACGCTTTTGGTAAAACACC
1 GCTAAAAAC-AGAGCATTAGCGGCGCTTTTGGAAAAACGCC
45278895 GCTAAAA
1 GCTAAAA
45278902 GTCATATAAC
Statistics
Matches: 152, Mismatches: 14, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
40 17 0.11
41 128 0.84
42 4 0.03
43 3 0.02
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.20
Consensus pattern (40 bp):
GCTAAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCC
Found at i:45279081 original size:14 final size:14
Alignment explanation
Indices: 45279059--45279152 Score: 61
Period size: 14 Copynumber: 6.7 Consensus size: 14
45279049 TTAATTATCA
*
45279059 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
45279073 TTATGGTTTAAGATGGT
1 TTATGGTTT-A-A-GGT
*
45279090 TTAGGGTTTAAGGT
1 TTATGGTTTAAGGT
45279104 TTATGAG-TTAA---
1 TTATG-GTTTAAGGT
* *
45279115 CTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
45279129 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
45279143 TTAAGGTTTA
1 TTATGGTTTA
45279153 GGAGTTAACT
Statistics
Matches: 63, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
10 1 0.02
11 8 0.13
14 38 0.60
15 3 0.05
16 2 0.03
17 11 0.17
ACGTcount: A:0.27, C:0.01, G:0.27, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:45279225 original size:14 final size:14
Alignment explanation
Indices: 45279208--45279269 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
45279198 GGATTATGAT
45279208 TTAGGGTTTAAGGG
1 TTAGGGTTTAAGGG
* *
45279222 TTAGGGTTTGA-GT
1 TTAGGGTTTAAGGG
* *
45279235 TTAAGGTGTAAGGG
1 TTAGGGTTTAAGGG
* *
45279249 TTTGGGGTTAAGGG
1 TTAGGGTTTAAGGG
45279263 TTTAGGG
1 -TTAGGG
45279270 GGTTAGGGTT
Statistics
Matches: 35, Mismatches: 11, Indels: 3
0.71 0.22 0.06
Matches are distributed among these distances:
13 9 0.26
14 21 0.60
15 5 0.14
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (14 bp):
TTAGGGTTTAAGGG
Found at i:45279246 original size:27 final size:28
Alignment explanation
Indices: 45279194--45279250 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
45279184 AATTATGGGT
* *
45279194 TTAGGGATTATGATTTAGGGTTTAAGGG
1 TTAGGGATTATGATTTAAGGTGTAAGGG
45279222 TTAGGG-TT-TGAGTTTAAGGTGTAAGGG
1 TTAGGGATTATGA-TTTAAGGTGTAAGGG
45279249 TT
1 TT
45279251 TGGGGTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.12
27 17 0.65
28 6 0.23
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (28 bp):
TTAGGGATTATGATTTAAGGTGTAAGGG
Found at i:45279250 original size:21 final size:20
Alignment explanation
Indices: 45279213--45279263 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
45279203 ATGATTTAGG
*
45279213 GTTTAAGGGTTAGGGTTTGA
1 GTTTAAGGGTAAGGGTTTGA
*
45279233 GTTTAAGGTGTAAGGGTTTGG
1 GTTTAAGG-GTAAGGGTTTGA
*
45279254 GGTTAAGGGT
1 GTTTAAGGGT
45279264 TTAGGGGGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.20, C:0.00, G:0.43, T:0.37
Consensus pattern (20 bp):
GTTTAAGGGTAAGGGTTTGA
Found at i:45279269 original size:21 final size:21
Alignment explanation
Indices: 45279215--45279269 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
45279205 GATTTAGGGT
*
45279215 TTAAGGG-TTAGGGTTTGAGT
1 TTAAGGGTTTAGGGTTTGAGG
* *
45279235 TTAA-GGTGTAAGGGTTTGGGG
1 TTAAGGGT-TTAGGGTTTGAGG
45279256 TTAAGGGTTTAGGG
1 TTAAGGGTTTAGGG
45279270 GGTTAGGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
19 2 0.07
20 4 0.14
21 19 0.68
22 3 0.11
ACGTcount: A:0.20, C:0.00, G:0.44, T:0.36
Consensus pattern (21 bp):
TTAAGGGTTTAGGGTTTGAGG
Found at i:45279944 original size:3 final size:3
Alignment explanation
Indices: 45279936--45279973 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
45279926 CATTTTAGTA
45279936 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
45279974 AAGAGGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45285678 original size:19 final size:19
Alignment explanation
Indices: 45285656--45285696 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
45285646 TTTATTGATA
45285656 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
45285674 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
45285693 TTTT
1 TTTT
45285697 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:45291414 original size:2 final size:2
Alignment explanation
Indices: 45291407--45291434 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
45291397 GTAAGGATGA
45291407 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45291435 TAAACTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45294678 original size:7 final size:7
Alignment explanation
Indices: 45294666--45294706 Score: 64
Period size: 7 Copynumber: 5.6 Consensus size: 7
45294656 ATAATAAAAT
45294666 ATATAAA
1 ATATAAA
45294673 ATATAAA
1 ATATAAA
45294680 ATATAAA
1 ATATAAA
45294687 ATATTAAA
1 ATA-TAAA
45294695 ATATCAAA
1 ATAT-AAA
45294703 ATAT
1 ATAT
45294707 TAGAATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 18 0.56
8 14 0.44
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:45294689 original size:23 final size:23
Alignment explanation
Indices: 45294659--45294706 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
45294649 GATGTGAATA
45294659 ATAAAATATATAAAATAT-AAAAT
1 ATAAAATAT-TAAAATATCAAAAT
45294682 ATAAAATATTAAAATATCAAAAT
1 ATAAAATATTAAAATATCAAAAT
45294705 AT
1 AT
45294707 TAGAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
ATAAAATATTAAAATATCAAAAT
Found at i:45294696 original size:8 final size:8
Alignment explanation
Indices: 45294655--45294713 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
45294645 TAATGATGTG
*
45294655 AATAATAA
1 AATATTAA
45294663 AATATATAA
1 AATAT-TAA
45294672 AATA-TAA
1 AATATTAA
45294679 AATA-TAA
1 AATATTAA
45294686 AATATTAA
1 AATATTAA
*
45294694 AATATCAA
1 AATATTAA
*
45294702 AATATTAG
1 AATATTAA
45294710 AATA
1 AATA
45294714 ATAATAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
7 14 0.31
8 24 0.53
9 7 0.16
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:45294724 original size:31 final size:30
Alignment explanation
Indices: 45294655--45294724 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
45294645 TAATGATGTG
*
45294655 AATAA-TAAAATATATAAAATATAAAATAT
1 AATAATTAAAATATACAAAATATAAAATAT
* *
45294684 AAAATATTAAAATAT-CAAAATATTAGAATAAT
1 AATA-ATTAAAATATACAAAATA-TAAAAT-AT
45294716 AATAATTAA
1 AATAATTAA
45294725 TATTGACAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
29 3 0.09
30 7 0.21
31 18 0.55
32 5 0.15
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (30 bp):
AATAATTAAAATATACAAAATATAAAATAT
Found at i:45294887 original size:20 final size:20
Alignment explanation
Indices: 45294830--45294889 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
45294820 AATACTACAT
45294830 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
45294849 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
45294872 AAATATGTACATAATATA
1 AAATATGTACATAATATA
45294890 GTGTTAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:45294931 original size:22 final size:24
Alignment explanation
Indices: 45294868--45294932 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
45294858 CGTGATAATA
*
45294868 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
45294893 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
45294916 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
45294933 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:45295077 original size:23 final size:25
Alignment explanation
Indices: 45295034--45295079 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45295024 TATACCTAAT
45295034 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
45295059 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
45295080 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:45295648 original size:30 final size:30
Alignment explanation
Indices: 45295570--45295704 Score: 132
Period size: 30 Copynumber: 4.5 Consensus size: 30
45295560 TAGGTACAAG
* *
45295570 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
45295600 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
45295630 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
* *
45295660 TGGTGGTGGAAATA-GAGCGGCTAGTGGAGT
1 TGGTGGTGGAAA-AGGTGTGGCTAGTGGAGT
*
45295690 TAGTGGTGGAAAAGG
1 TGGTGGTGGAAAAGG
45295705 CTAAGATTTA
Statistics
Matches: 89, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
29 3 0.03
30 85 0.96
31 1 0.01
ACGTcount: A:0.23, C:0.04, G:0.47, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:45296503 original size:91 final size:89
Alignment explanation
Indices: 45296388--45296727 Score: 330
Period size: 90 Copynumber: 3.8 Consensus size: 89
45296378 TTAAAAACAG
* * * *
45296388 AAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTTACCTCTCGTAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
45296452 TTGCAAAGCATTAATTAAAAAAAAC
66 TTGCAAA-CATTAATTAAAAAAAAC
* *
45296477 ATCAATTGAAAATACCTCGGCGCGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 A--AATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
45296541 TTTTTTGACAAACATAAATTGAAAAAAAAG
62 TTTTTTG-CAAACATTAATT-AAAAAAAAC
* ** ** * *
45296571 AAATTGAAAATATCTCA--GCGTGTTCTGAGGCTGAACTCACCTCTCGCAATATGAGTTAATTTT
1 AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
* * ***
45296634 TTTGGAAA-AATAATATTTGAAAAAC
65 TTTGCAAACATTAAT-TAAAAAAAAC
* * * *
45296659 AGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATT
1 A-AA-TTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
45296724 TTTT
64 TTTT
45296728 TTGAAACACA
Statistics
Matches: 206, Mismatches: 32, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
88 10 0.05
89 7 0.03
90 59 0.29
91 58 0.28
92 46 0.22
93 13 0.06
94 13 0.06
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGCAAACATTAATTAAAAAAAAC
Found at i:45296617 original size:90 final size:90
Alignment explanation
Indices: 45296380--45296832 Score: 428
Period size: 92 Copynumber: 5.0 Consensus size: 90
45296370 ACTAGACATT
* * ** * *
45296380 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTTACCTCTCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG--CGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
45296445 TTGA--TTTTTG-CAAAGCATTAATTAAA
64 TTGATTTTTTTGACAAA-CATAAATT-GA
** * *
45296471 AAAAACATCAATTGAAAATACCTCGGCGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTC--AGCGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAG
45296536 TTGATTTTTTTGACAAACATAAATTGA
64 TTGATTTTTTTGACAAACATAAATTGA
* * * *
45296563 AAAAAAAGAAATTGAAAATATCTCAGCGTGTTCTGAGGCTGAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
45296628 AATTTTTTTGGA-AAA-ATAATATTTG-
66 GATTTTTTT-GACAAACATAA-A-TTGA
* * *
45296653 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC--GTGA-TCTGAGGCTCAACTCACCTCTCGCAATATGA
* *
45296717 GCTGATTTTTTTTGA-AACACAGAAATTG-
63 GTTGA-TTTTTTTGACAA-ACATAAATTGA
* * * * * *
45296745 AAGAACAGAAATGGAAAACACCTCAGCGT-CT-TGAGGTTCAACTCACCTCTCGCAATATGAGCT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
45296808 GA--TTTTTGACAAACAAAAATTGA
66 GATTTTTTTGACAAACATAAATTGA
45296831 AA
1 AA
45296833 TTACCTCAGC
Statistics
Matches: 306, Mismatches: 39, Indels: 39
0.80 0.10 0.10
Matches are distributed among these distances:
85 16 0.05
86 4 0.01
88 31 0.10
89 4 0.01
90 75 0.25
91 62 0.20
92 82 0.27
93 25 0.08
94 7 0.02
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (90 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGACAAACATAAATTGA
Found at i:45296674 original size:182 final size:180
Alignment explanation
Indices: 45296482--45296814 Score: 447
Period size: 182 Copynumber: 1.8 Consensus size: 180
45296472 AAAACATCAA
* * * *
45296482 TTGAAAATACCTCGGCGCGTGAC-CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
1 TTGAAAATACCTCAGCGCGTGACTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTT
* * * * * *
45296545 TTGACAA-ACATAAATTGAAAAAAAAGAAATTGAAAATATCTCAGCGTGTTCTGAGGCTGAACTC
65 TTGA-AACACAGAAATTG-AAAAAAAGAAATGGAAAACACCTCAGCGT-CT-TGAGGCTCAACTC
*
45296609 ACCTCTCGCAATATGAGTTAATTTTTTTGGAAAAATAATATTTGAAAAACAGAAT
126 ACCTCTCGCAATATGAGCTAATTTTTTTGGAAAAATAATATTTGAAAAACAGAAT
* *
45296664 TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
1 TTGAAAATACCTCAGCGCGTGACTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
* * *
45296729 TGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTC
66 TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTC
*
45296794 TCGCAATATGAGCTGATTTTT
131 TCGCAATATGAGCTAATTTTT
45296815 GACAAACAAA
Statistics
Matches: 131, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
180 35 0.27
181 1 0.01
182 76 0.58
183 19 0.15
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (180 bp):
TTGAAAATACCTCAGCGCGTGACTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTT
TGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTC
TCGCAATATGAGCTAATTTTTTTGGAAAAATAATATTTGAAAAACAGAAT
Found at i:45296934 original size:75 final size:75
Alignment explanation
Indices: 45296749--45297263 Score: 694
Period size: 75 Copynumber: 7.0 Consensus size: 75
45296739 AAATTGAAGA
* * * * *
45296749 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA--
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
45296810 TTTTTGACAA-
66 TTTTTGA-AAG
* * * * * *
45296820 ACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGTTCAACCCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
45296885 TTTTTGAAAG
66 TTTTTGAAAG
*
45296895 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
45296960 TTTTTTTAAAG
65 TTTTTTGAAAG
*
45296971 ACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
45297034 TTTTTGACAA-
66 TTTTTGA-AAG
* * * * *
45297044 ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
45297109 TTTTTGAAAA
66 TTTTTGAAAG
45297119 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
45297183 TTTTTG-ATG
66 TTTTTGAAAG
* * * *
45297192 --ATAAATTGAAAATACCTCAATGTGACTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
45297255 TTTTTGAAA
66 TTTTTGAAA
45297264 AATAAATTAA
Statistics
Matches: 398, Mismatches: 34, Indels: 22
0.88 0.07 0.05
Matches are distributed among these distances:
71 73 0.18
72 7 0.02
73 103 0.26
74 13 0.03
75 130 0.33
76 72 0.18
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (75 bp):
ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTGAAAG
Found at i:45297053 original size:224 final size:219
Alignment explanation
Indices: 45296774--45297902 Score: 1099
Period size: 224 Copynumber: 4.9 Consensus size: 219
45296764 ACCTCAGCGT
* * * *
45296774 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTGACAAACAAAAATTGAAATTACCT
1 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAA-TACCT
* * * * *
45296839 CAGCGTGTCTTGAGGTTCAACCCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATT
65 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
* *
45296904 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTAA
130 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGA
* * * * *
45296969 AGACAGAAATTGAAAATACCTTAACGTGT
193 TG--ATAAATTGAAAATACCTCAATGTGA
* *
45296998 CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCT
1 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAA-TACCT
*
45297063 CAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
65 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
45297128 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGATG
130 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATG
45297192 ATAAATTGAAAATACCTCAATGTGA
195 ATAAATTGAAAATACCTCAATGTGA
45297217 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAATAAATTAAAACACAAA
1 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGA--TTTTTG-----------AAAA-ACAAA
* *
45297282 AATTGACAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGACTCTTTA
52 AATTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTT-
* * * ** *
45297347 AAACTAGACATT-AAAAATAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACT
113 ----T-----TTGAAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCACC
45297410 TCTCGCAATATGAGTTGATTTTTTT-ATGATAAATTGAAAATACCTCAATGTGA
166 TCTCGCAATATGAGTTGATTTTTTTGATGATAAATTGAAAATACCTCAATGTGA
*
45297463 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAATAAATTAAAACACGAAAT
1 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTG--------A--AAAACA--AAAA
* * *
45297528 TTGACAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAA
54 TTGA-AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT---
* *
45297593 AAAACAT-AAATTGAACAGAAATCGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCG
115 ------TGAAA---AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
* * *
45297657 CCATATGAGTAGA-TTTTTTGATGATAAATAGAAAATACCTCAATGTGA
171 CAATATGAGTTGATTTTTTTGATGATAAATTGAAAATACCTCAATGTGA
* *
45297705 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTATTTTTATTTTGAAAGACAGAA
1 CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTG--------A----T-TTTTGAAAAACAAAA
* *
45297770 ATTGAAAATACCTCACCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
53 ATTG-AAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * * * * *
45297833 -AAAA-ATAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGTT
117 AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
45297896 GATTTTT
182 GATTTTT
45297903 GACAAACAGA
Statistics
Matches: 779, Mismatches: 61, Indels: 125
0.81 0.06 0.13
Matches are distributed among these distances:
219 56 0.07
221 14 0.02
224 175 0.22
228 51 0.07
229 6 0.01
232 7 0.01
233 57 0.07
234 3 0.00
235 3 0.00
237 1 0.00
240 1 0.00
241 20 0.03
242 101 0.13
243 55 0.07
244 107 0.14
245 7 0.01
246 100 0.13
247 8 0.01
250 1 0.00
254 1 0.00
255 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (219 bp):
CTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTGAAATACCTC
AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG
AAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATGA
TAAATTGAAAATACCTCAATGTGA
Found at i:45297360 original size:87 final size:87
Alignment explanation
Indices: 45297194--45297428 Score: 271
Period size: 87 Copynumber: 2.7 Consensus size: 87
45297184 TTTTGATGAT
* ** * * *
45297194 AAATTGAAAATACCTCA-ATGTGACTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTCT
45297258 TTGAAAAATAAATTAAAACACAA
66 TTGAAAAATAAATTAAAA-ACAA
* *
45297281 AAATTGACAATACCTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-CTCT
1 AAATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTCT
* * *
45297344 TT-AAAACTAGACATTAAAAATAG
66 TTGAAAAATA-A-ATTAAAAACAA
* * * *
45297367 AAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AAATTGAAAATACCTCAG-ACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
45297429 TTTTTTATGA
Statistics
Matches: 125, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
85 6 0.05
86 23 0.18
87 59 0.47
88 37 0.30
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (87 bp):
AAATTGAAAATACCTCAGACGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATCTCT
TTGAAAAATAAATTAAAAACAA
Done.