Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 156 of 328
Found at i:45587461 original size:7 final size:6
Alignment explanation
Indices: 45587447--45587489 Score: 59
Period size: 6 Copynumber: 6.8 Consensus size: 6
45587437 TACAACTAAA
*
45587447 AAAATT AAAATTT AAAATAC AAAATT AAAATT AAAATT AAAAT
1 AAAATT AAAA-TT AAAAT-T AAAATT AAAATT AAAATT AAAAT
45587490 AAAGATTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
6 22 0.67
7 11 0.33
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:45590206 original size:44 final size:47
Alignment explanation
Indices: 45590149--45590271 Score: 182
Period size: 44 Copynumber: 2.7 Consensus size: 47
45590139 ATCAAATAAA
*
45590149 TAATGCATACTTTA-CCTGGGTAAAGTATGCATTATTAGT-AA-AT-C
1 TAATACATACTTTATCC-GGGTAAAGTATGCATTATTAGTGAATATGC
* *
45590193 TACTACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATCTGC
1 TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATATGC
45590240 TAATACATACTTTATCCGGGTAAAGTATGCAT
1 TAATACATACTTTATCCGGGTAAAGTATGCAT
45590272 ACATTCTTAA
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
44 34 0.48
45 4 0.06
46 1 0.01
47 32 0.45
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (47 bp):
TAATACATACTTTATCCGGGTAAAGTATGCATTATTAGTGAATATGC
Found at i:45590912 original size:22 final size:22
Alignment explanation
Indices: 45590887--45590929 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
45590877 AGATTAATCG
45590887 CAAACCCATAATCACAAAACCC
1 CAAACCCATAATCACAAAACCC
* *
45590909 CAAATCCATAATCATAAAACC
1 CAAACCCATAATCACAAAACC
45590930 TTAAAATCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.51, C:0.35, G:0.00, T:0.14
Consensus pattern (22 bp):
CAAACCCATAATCACAAAACCC
Found at i:45590929 original size:37 final size:36
Alignment explanation
Indices: 45590888--45590972 Score: 89
Period size: 37 Copynumber: 2.3 Consensus size: 36
45590878 GATTAATCGC
* * * *
45590888 AAACCCATAATCACAAAACCCCAAATCCATAATCATA
1 AAACCCAAAATCA-AAAACCCCAAACCCATAAACACA
* *
45590925 AAACCTTAAAATCATAAACCCCAAACCCATAAACACA
1 AAACC-CAAAATCAAAAACCCCAAACCCATAAACACA
45590962 AAACCCTAAAA
1 AAACCC-AAAA
45590973 CCTTAAACTA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
37 33 0.85
38 6 0.15
ACGTcount: A:0.54, C:0.32, G:0.00, T:0.14
Consensus pattern (36 bp):
AAACCCAAAATCAAAAACCCCAAACCCATAAACACA
Found at i:45590979 original size:22 final size:24
Alignment explanation
Indices: 45590923--45590989 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 24
45590913 TCCATAATCA
45590923 TAAAACCTTAAA-ATCATAAACCC
1 TAAAACCTTAAACATCATAAACCC
* * *
45590946 CAAACCCATAAACA-CA-AAACCC
1 TAAAACCTTAAACATCATAAACCC
45590968 TAAAACCTTAAACTAT-ATAAAC
1 TAAAACCTTAAAC-ATCATAAAC
45590990 TATAATCCCT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
22 16 0.47
23 13 0.38
24 5 0.15
ACGTcount: A:0.54, C:0.28, G:0.00, T:0.18
Consensus pattern (24 bp):
TAAAACCTTAAACATCATAAACCC
Found at i:45590980 original size:37 final size:37
Alignment explanation
Indices: 45590903--45590980 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
45590893 CATAATCACA
* * * * *
45590903 AAACCCCAAATCCATAATCATAAAACCTTAAAATCAT
1 AAACCCCAAACCCATAAACACAAAACCCTAAAACCAT
*
45590940 AAACCCCAAACCCATAAACACAAAACCCTAAAACCTT
1 AAACCCCAAACCCATAAACACAAAACCCTAAAACCAT
45590977 AAAC
1 AAAC
45590981 TATATAAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (37 bp):
AAACCCCAAACCCATAAACACAAAACCCTAAAACCAT
Found at i:45591433 original size:132 final size:132
Alignment explanation
Indices: 45591275--45591775 Score: 815
Period size: 132 Copynumber: 3.8 Consensus size: 132
45591265 CTGACAAGTG
* * *
45591275 TATCCCAACACTTAGGAAAGTGTCACCCCAAAACTGTCGTCTTAGGACTAGACAAAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* *
45591340 TTATTCAAGCGTTGTCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCGTAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
45591405 TC
131 TC
* * * *
45591407 TATCCCAACACTTAGAAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTAGACAAAAGTCAATTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
*
45591472 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCATTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
45591537 TC
131 TC
* ** *
45591539 TATCCCAACACTTAGGGAAGTGTCACCACAAAAGTGTTTTCTTAGGACTACACAGAAGCCAACTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
*
45591604 TTATTCAAGCGTTGCCTTAGGCATACATATCCTAACCCTTATACAAAGAGTTGGCCAAAGCATAG
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
45591669 TC
131 TC
** *
45591671 TATCCCAACACTTAGGAAA-TGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTC
1 TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
* *
45591735 TTATTCAAGCGTTGCTTTAGGCATACATATACCAACCCTTA
66 TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTA
45591776 GGAAAATATC
Statistics
Matches: 341, Mismatches: 28, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
131 77 0.23
132 264 0.77
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (132 bp):
TATCCCAACACTTAGGAAAGTGTCACCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAACTC
TTATTCAAGCGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATAG
TC
Found at i:45591845 original size:91 final size:91
Alignment explanation
Indices: 45591675--45591845 Score: 254
Period size: 91 Copynumber: 1.9 Consensus size: 91
45591665 ATAGTCTATC
* *
45591675 CCAACACTTAGGAAATGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
1 CCAACACTTAGGAAATATCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
*
45591740 CAAGCGTTGCTTTAGGCATACATATA
66 CAAGCATTGCTTTAGGCATACATATA
* * **
45591766 CCAACCCTTAGGAAAATATCGCCACAAAAGTGTCGTCTTAGGATTACAC-AAAGGCAACTCTTAT
1 CCAACACTTAGG-AAATATCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTAT
*
45591830 TTAAGCATTGCTTTAG
65 TCAAGCATTGCTTTAG
45591846 ACATGCATCT
Statistics
Matches: 71, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 38 0.54
92 33 0.46
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (91 bp):
CCAACACTTAGGAAATATCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
CAAGCATTGCTTTAGGCATACATATA
Found at i:45591863 original size:91 final size:91
Alignment explanation
Indices: 45591675--45591866 Score: 253
Period size: 91 Copynumber: 2.1 Consensus size: 91
45591665 ATAGTCTATC
* * *
45591675 CCAACACTTAGGAAATGTCGTCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
1 CCAACCCTTAGGAAATATCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
* *
45591740 CAAGCGTTGCTTTAGGCATACATATA
66 CAAGCATTGCTTTAGACATACATATA
* **
45591766 CCAACCCTTAGGAAAATATCGCCACAAAAGTGTCGTCTTAGGATTACAC-AAAGGCAACTCTTAT
1 CCAACCCTTAGG-AAATATCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTAT
* * *
45591830 TTAAGCATTGCTTTAGACATGCATCT-
65 TCAAGCATTGCTTTAGACATACATATA
45591856 CCTAACCCTTA
1 CC-AACCCTTA
45591867 TACAAAGAGT
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
90 2 0.02
91 53 0.60
92 33 0.38
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (91 bp):
CCAACCCTTAGGAAATATCGCCACAAAAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATT
CAAGCATTGCTTTAGACATACATATA
Found at i:45593895 original size:35 final size:35
Alignment explanation
Indices: 45593856--45593931 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 35
45593846 AATTTAATTT
45593856 ATATTTT-ATTATTTGATT-TAAATATAATTTGTAAA
1 ATATTTTGA-TATTTGATTATAAATATAATTT-TAAA
* *
45593891 ATATTTTGATATTTTATTATGAATATAATTTTAAA
1 ATATTTTGATATTTGATTATAAATATAATTTTAAA
45593926 ATATTT
1 ATATTT
45593932 AAATTTTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 25 0.68
36 12 0.32
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (35 bp):
ATATTTTGATATTTGATTATAAATATAATTTTAAA
Found at i:45594154 original size:21 final size:21
Alignment explanation
Indices: 45594128--45594180 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
45594118 CATTATTTCT
* *
45594128 AATCTCACCGCTATAGTATCC
1 AATCTCACCGCTACAGTAACC
*
45594149 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
45594170 AATCTCACCGC
1 AATCTCACCGC
45594181 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:45594511 original size:70 final size:70
Alignment explanation
Indices: 45594330--45594580 Score: 335
Period size: 70 Copynumber: 3.6 Consensus size: 70
45594320 TAGCTGACGA
* * * * * * * **
45594330 TTAAGGCTTGCAAGTTCAATATCGCAGCTTCCAAAATAGTTAGCGCAAG-CTTATGCTCTCAGCT
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTC-TACGCTCCCAATT
*
45594394 GGTATC
65 AGTATC
* * *
45594400 TTAA-GCTTGCAGATTCAATACCACAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAATTA
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAATTA
45594464 GTATC
66 GTATC
*
45594469 TTAAGGCTCGCAGGTTCAATACCGTAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAATTA
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAATTA
45594534 GTATC
66 GTATC
* *
45594539 TTAAGGCTCGCAGGTTCAATACCGTAGCCTCCAAAACAGTTA
1 TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTA
45594581 TGTAACAGCC
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
69 56 0.34
70 107 0.66
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (70 bp):
TTAAGGCTCGCAGGTTCAATACCGCAGCCTCCAAAATAGTTAGCGCGAGTCTACGCTCCCAATTA
GTATC
Found at i:45594965 original size:83 final size:83
Alignment explanation
Indices: 45594826--45594992 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
45594816 TATGAGGTCC
45594826 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTAGACATCCATTATAAGTTTAAA
1 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTAGACATCCATTATAAGTTTAAA
45594891 TGTTTATTATATTAAGGT
66 TGTTTATTATATTAAGGT
*
45594909 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTGGACATCCATTATAAGTTTAAA
1 TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTAGACATCCATTATAAGTTTAAA
45594974 TGTTTATTATATTAAGGT
66 TGTTTATTATATTAAGGT
45594992 T
1 T
45594993 AAAATGGTAA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (83 bp):
TTATTATGTTATTAGACCATTGATATATTAAATGGACATTGTTAGACATCCATTATAAGTTTAAA
TGTTTATTATATTAAGGT
Found at i:45595969 original size:44 final size:41
Alignment explanation
Indices: 45595890--45596015 Score: 119
Period size: 42 Copynumber: 3.0 Consensus size: 41
45595880 TCCTGATATA
* * * * *
45595890 TGATTTCGTATAAGACCACGTCTGGGACGTTGGCATTGATT
1 TGATTTTGTGTAAGACCATGTCTGGGACATAGGCATTGATT
* *
45595931 TGAAATTTATGTGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 TG--ATTT-TGTGTAAGACCATGTCTGGGACATAGGCATTG-ATT
* *
45595976 TGATTTTGTGTAAGACTC-TCTCTGGGACAGAGGCATTGAT
1 TGATTTTGTGTAAGAC-CATGTCTGGGACATAGGCATTGAT
45596016 ATTTGATTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
41 4 0.06
42 26 0.37
43 9 0.13
44 26 0.37
45 5 0.07
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (41 bp):
TGATTTTGTGTAAGACCATGTCTGGGACATAGGCATTGATT
Found at i:45596000 original size:42 final size:44
Alignment explanation
Indices: 45595935--45596036 Score: 113
Period size: 42 Copynumber: 2.4 Consensus size: 44
45595925 TTGATTTGAA
* **
45595935 ATTTATGTGTAAGACCATGTCTGGGACATCGGCATCG-TATTTG
1 ATTTATGTGTAAGACCATCTCTGGGACAGAGGCATCGATATTTG
*
45595978 ATTT-TGTGTAAGACTC-TCTCTGGGACAGAGGCATTGATATTTG
1 ATTTATGTGTAAGAC-CATCTCTGGGACAGAGGCATCGATATTTG
**
45596021 A-TTACATGTAAGACCA
1 ATTTATGTGTAAGACCA
45596037 CATATAGGAC
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
42 29 0.59
43 20 0.41
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (44 bp):
ATTTATGTGTAAGACCATCTCTGGGACAGAGGCATCGATATTTG
Found at i:45598048 original size:211 final size:210
Alignment explanation
Indices: 45597647--45598701 Score: 555
Period size: 209 Copynumber: 5.0 Consensus size: 210
45597637 CCAAAATAGA
** * * ** * *
45597647 AGTTAGCGCGAGCCTAAGCTCCCAGCTGATATCCTAAGGCTCATTGGTTTAATACCATAGCCTCC
1 AGTTAGCATGAGCCTAAGCTCTCAGCTGATATCTTAAGGCTCACAGGCTCAATACCATAGCCTCC
* * * * * * * *
45597712 AAAATAATTAGCGCGAGCCTACGCTCCCAGTTGATACCTTAAGGCTCGTAGGTTCAATACTATAG
66 AAAATAGTTAGCCCAAGCCTACGCTCCCAGTAGATACCTTAAAGCTCGCAGGTTCAATACTACAA
* * * * * **
45597777 CCTCCAAAATAGTTAACGCCGGCTTACGCTCTCAGATGGTATCATAAGGCTCGTAGGTTCAATAC
131 CCTCCAAAACAGTTAACGCCGGCCTACACTCCCAGATGATATCATAAGGCTCACAGGTTCAATAC
*
45597842 TGCAACCTCCAAAACT
196 CGCAACCTCCAAAA-T
* * * * *
45597858 GGTTAGCATGAGCTTCTAATC-CT-AGCTGGTATCTTAAGGCTCGCAGGCTCAATACCACAGCCT
1 AGTTAGCATGAGC--CTAAGCTCTCAGCTGATATCTTAAGGCTCACAGGCTCAATACCATAGCCT
*
45597921 CCAAAATAGTTAGCCCAAGCCTACGCTCCCAGATAG-TATCC-TAAAGCTCGCATGTTCAATACT
64 CCAAAATAGTTAGCCCAAGCCTACGCTCCCAG-TAGATA-CCTTAAAGCTCGCAGGTTCAATACT
* * * * *
45597984 ACAACCTCTAAAACAGTTAACG-TGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTC
127 ACAACCTCCAAAACAGTTAACGCCG-GCCTACACTCCCAGATGATATCATAAGGCTCACAGGTTC
**
45598048 AATACCGCAGTCTCCAAAAT
191 AATACCGCAACCTCCAAAAT
* * * * * *
45598068 AGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTCACAGGTTTAATACCGTAACCTTC
1 AGTTAGCATGAGCCTAAGCTCTCAGCTGATATCTTAAGGCTCACAGGCTCAATACCATAGCCTCC
***** * ** * * ** * ***
45598133 AAAATAGTTAATGTGAGCTTGTGCTTCCAGTTAG-TATCTTAGGGCTCACAGGTTCAATACCGTA
66 AAAATAGTTAGCCCAAGCCTACGCTCCCAG-TAGATACCTTAAAGCTCGCAGGTTCAATACTACA
* * * * * * ** * **
45598197 GCCTCCAAAACAGTTAGCG-CGAACCTACTCTCCCA-ACTGGTATCCTTTGTCTCGTAGGTTCAA
130 ACCTCCAAAACAGTTAACGCCG-GCCTACACTCCCAGA-TGATATCATAAGGCTCACAGGTTCAA
* **
45598260 TACCACAA-CTTTAAAAT
193 TACCGCAACCTCCAAAAT
* * * * * * ** * * * *
45598277 AATTAGCGTGAGCCTATGCTCTCAGTTGATATCCTAAAGCTCGTAGGTTCAATACTACAACCTCC
1 AGTTAGCATGAGCCTAAGCTCTCAGCTGATATCTTAAGGCTCACAGGCTCAATACCATAGCCTCC
* * * * * * ** * * *
45598342 AAAATAGTTAGCGCGAA-CTTACACTCTCA-TCTGGTATTTTAAGGCTCGCAGGTCCAAT-GTCA
66 AAAATAGTTAGC-CCAAGCCTACGCTCCCAGT-AGATACCTTAAAGCTCGCAGGTTCAATACT-A
* * * ** * * * *
45598404 CAGCCTCCAAAATAGTTAGCG-CGAGCCTACGTTCCCA-ACTGGTATCTTAAGGCTCGCAGGTTT
128 CAACCTCCAAAACAGTTAACGCCG-GCCTACACTCCCAGA-TGATATCATAAGGCTCACAGGTTC
*
45598467 AATACCGCAACCTCTAAAAT
191 AATACCGCAACCTCCAAAAT
* * * * * * * ** *** * *
45598487 AGTTAGTACGAGCTTACGCTCCCAACTGGTATCTTAAAACTCACAAATTCAATACCGTAG-CTTC
1 AGTTAGCATGAGCCTAAGCTCTCAGCTGATATCTTAAGGCTCACAGGCTCAATACCATAGCCTCC
* * * * * * *
45598551 AAAACAGTTAGCGCGAGCCTACACTACCAGCT-GGTATCC-TAAAGCTCGCAGGTTCAATA-TCG
66 AAAATAGTTAGCCCAAGCCTACGCTCCCAG-TAGATA-CCTTAAAGCTCGCAGGTTCAATACT-A
* * * * ** * * * * *
45598613 CAACATCCAAAACAGTTAATG-CGATCTTACGTTCCCAGCTAATATCTTAAGGCTCGCACGTTCA
128 CAACCTCCAAAACAGTTAACGCCG-GCCTACACTCCCAGATGATATCATAAGGCTCACAGGTTCA
* *
45598677 ATACCACAGCCTCCAAAAT
192 ATACCGCAACCTCCAAAAT
45598696 AGTTAG
1 AGTTAG
45598702 TGTCAGCTTA
Statistics
Matches: 648, Mismatches: 176, Indels: 42
0.75 0.20 0.05
Matches are distributed among these distances:
207 1 0.00
208 6 0.01
209 279 0.43
210 195 0.30
211 157 0.24
212 5 0.01
213 5 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (210 bp):
AGTTAGCATGAGCCTAAGCTCTCAGCTGATATCTTAAGGCTCACAGGCTCAATACCATAGCCTCC
AAAATAGTTAGCCCAAGCCTACGCTCCCAGTAGATACCTTAAAGCTCGCAGGTTCAATACTACAA
CCTCCAAAACAGTTAACGCCGGCCTACACTCCCAGATGATATCATAAGGCTCACAGGTTCAATAC
CGCAACCTCCAAAAT
Found at i:45598540 original size:279 final size:278
Alignment explanation
Indices: 45597712--45598701 Score: 860
Period size: 279 Copynumber: 3.5 Consensus size: 278
45597702 CATAGCCTCC
* * * * * *
45597712 AAAATAATTAGCGCGAGCCTACGCTCCCAGTTGATA-CCTTAAGGCTCGTAGGTTCAATACTATA
1 AAAACAATTAGCGCGAGCCTACACTCCCAGCTGATATCC-TAAAGCTCGCAGGTTCAATACTACA
* * * * *
45597776 GCCTCCAAAATAGTTAACGCCG-GCTTACGCTCTCAGATGGTATCATAAGGCTCGTAGGTTCAAT
65 ACCTCCAAAATAGTTAACG-CGAGCTTACGCTCTCAGCTGATATCTTAAGGCTCGCAGGTTCAAT
** * * * * *
45597840 ACTGCAACCTCCAAAACTGGTTAGCATGAGCTTCTA-ATCCTAGCTGGTATCTTAAGGCTCGCAG
129 ACCACAGCCTCCAAAA-TAGTTAGCGTGAGC--CTAGTTCCCAGCTGGTATCTTAAGGCTCGCAG
* * * * * * *
45597904 GCTCAATACCACAGCCTCCAAAATAGTTAGCCCAAGCCTACGCTCCCAGA-TAGTATCCTAAAGC
191 GTTCAATACCGCAGCCTCCAAAATAGTTAGCACGAGCCTACGCTCCCA-ACTGGTATCTTAAAAC
* * *
45597968 TCGCATGTTCAATACTACAACCTCT
255 TCGCAAGTTCAATACCACAA-CTTT
* * * * * * ** *
45597993 AAAACAGTTAACGTGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATACCGCAG
1 AAAACAATTAGCGCGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACAA
* * ** * * *
45598058 TCTCCAAAATAGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTCACAGGTTTAATAC
66 CCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGCTGATATCTTAAGGCTCGCAGGTTCAATAC
** * * ** * * * * * *
45598123 CGTAACCTTCAAAATAGTTAATGTGAG-CTTGTGCTTCCAGTTAGTATCTTAGGGCTCACAGGTT
131 CACAGCCTCCAAAATAGTTAGCGTGAGCCTAGT--TCCCAGCTGGTATCTTAAGGCTCGCAGGTT
* * * * * ***
45598187 CAATACCGTAGCCTCCAAAACAGTTAGCGCGAACCTACTCTCCCAACTGGTATCCTT-TGTCTCG
194 CAATACCGCAGCCTCCAAAATAGTTAGCACGAGCCTACGCTCCCAACTGGTAT-CTTAAAACTCG
* *
45598251 TAGGTTCAATACCACAACTTT
258 CAAGTTCAATACCACAACTTT
* * ** * * *
45598272 AAAATAATTAGCGTGAGCCTATGCTCTCAGTTGATATCCTAAAGCTCGTAGGTTCAATACTACAA
1 AAAACAATTAGCGCGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACAA
* * * * * * * **
45598337 CCTCCAAAATAGTTAGCGCGAACTTACACTCTCATCTGGTATTTTAAGGCTCGCAGGTCCAATGT
66 CCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGCTGATATCTTAAGGCTCGCAGGTTCAATAC
* * *
45598402 CACAGCCTCCAAAATAGTTAGCGCGAGCCTACGTTCCCAACTGGTATCTTAAGGCTCGCAGGTTT
131 CACAGCCTCCAAAATAGTTAGCGTGAGCCTA-GTTCCCAGCTGGTATCTTAAGGCTCGCAGGTTC
* * * * *
45598467 AATACCGCAACCTCTAAAATAGTTAGTACGAGCTTACGCTCCCAACTGGTATCTTAAAACTCACA
195 AATACCGCAGCCTCCAAAATAGTTAGCACGAGCCTACGCTCCCAACTGGTATCTTAAAACTCGCA
* ** * *
45598532 AATTCAATACCGTAGCTTC
260 AGTTCAATACCACAACTTT
* * * *
45598551 AAAACAGTTAGCGCGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATA-TCGCA
1 AAAACAATTAGCGCGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACT-ACA
* * * * * * * *
45598615 ACATCCAAAACAGTTAATGCGATCTTACGTTCCCAGCTAATATCTTAAGGCTCGCACGTTCAATA
65 ACCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGCTGATATCTTAAGGCTCGCAGGTTCAATA
45598680 CCACAGCCTCCAAAATAGTTAG
130 CCACAGCCTCCAAAATAGTTAG
45598702 TGTCAGCTTA
Statistics
Matches: 555, Mismatches: 143, Indels: 24
0.77 0.20 0.03
Matches are distributed among these distances:
277 2 0.00
278 4 0.01
279 334 0.60
280 96 0.17
281 117 0.21
282 2 0.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (278 bp):
AAAACAATTAGCGCGAGCCTACACTCCCAGCTGATATCCTAAAGCTCGCAGGTTCAATACTACAA
CCTCCAAAATAGTTAACGCGAGCTTACGCTCTCAGCTGATATCTTAAGGCTCGCAGGTTCAATAC
CACAGCCTCCAAAATAGTTAGCGTGAGCCTAGTTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCA
ATACCGCAGCCTCCAAAATAGTTAGCACGAGCCTACGCTCCCAACTGGTATCTTAAAACTCGCAA
GTTCAATACCACAACTTT
Found at i:45598681 original size:139 final size:139
Alignment explanation
Indices: 45598411--45598662 Score: 333
Period size: 139 Copynumber: 1.8 Consensus size: 139
45598401 TCACAGCCTC
* ** * * * *
45598411 CAAAATAGTTAGCGCGAGCCTACGTTCCCAACTGGTATCTTAAGGCTCGCAGGTTTAATACCGCA
1 CAAAACAGTTAGCGCGAGCCTACACTACCAACTGGTATCCTAAAGCTCGCAGGTTCAATACCGCA
* * * * **
45598476 ACCTCTAAAATAGTTAGTACGAGCTTACGCTCCCAACTGGTATCTTAAAACTCACAAATTCAATA
66 ACATCCAAAACAGTTAATACGAGCTTACGCTCCCAACTAATATCTTAAAACTCACAAATTCAATA
45598541 CCGTAGCTT
131 CCGTAGCTT
* *
45598550 CAAAACAGTTAGCGCGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATATCGCA
1 CAAAACAGTTAGCGCGAGCCTACACTACCAACTGGTATCCTAAAGCTCGCAGGTTCAATACCGCA
* * * *
45598615 ACATCCAAAACAGTTAATGCGATCTTACGTTCCCAGCTAATATCTTAA
66 ACATCCAAAACAGTTAATACGAGCTTACGCTCCCAACTAATATCTTAA
45598663 GGCTCGCACG
Statistics
Matches: 94, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
139 94 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (139 bp):
CAAAACAGTTAGCGCGAGCCTACACTACCAACTGGTATCCTAAAGCTCGCAGGTTCAATACCGCA
ACATCCAAAACAGTTAATACGAGCTTACGCTCCCAACTAATATCTTAAAACTCACAAATTCAATA
CCGTAGCTT
Found at i:45598717 original size:70 final size:70
Alignment explanation
Indices: 45597647--45598701 Score: 743
Period size: 70 Copynumber: 15.1 Consensus size: 70
45597637 CCAAAATAGA
* * * * *** * *
45597647 AGTTAGCGCGAGCCTAAGCTCCCAGCTGATATCCTAAGGCTCATTGGTTTAATACCATAGCCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45597712 AAAAT
66 AAAAT
* * * * * * * *
45597717 AATTAGCGCGAGCCTACGCTCCCAGTTGATACCTTAAGGCTCGTAGGTTCAATACTATAGCCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45597782 AAAAT
66 AAAAT
* * * * * ** *
45597787 AGTTAACGCCG-GCTTACGCTCTCAGATGGTATCATAAGGCTCGTAGGTTCAATACTGCAACCTC
1 AGTTAGCG-CGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTC
45597851 CAAAACT
65 CAAAA-T
* ** ** * *
45597858 GGTTAGCATGAGCTT-CTAATCCTAGCTGGTATCTTAAGGCTCGCAGGCTCAATACCACAGCCTC
1 AGTTAGCGCGAGCTTAC-GCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTC
45597922 CAAAAT
65 CAAAAT
* * * * * * * * * * *
45597928 AGTTAGCCCAAGCCTACGCTCCCAGATAGTATCCTAAAGCTCGCATGTTCAATACTACAACCTCT
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
*
45597993 AAAAC
66 AAAAT
* * * ** * * * * *
45597998 AGTTAACGTGAGCCTATACTCCCAGCTGATATCCTAAGGCTCACAGGTTCAATACCGCAGTCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45598063 AAAAT
66 AAAAT
** * * * * * ** * *
45598068 AGTTAGCATGAGCCTACGCTCTCAGCTGATATCTTAAGGCTCACAGGTTTAATACCGTAACCTTC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45598133 AAAAT
66 AAAAT
** * ** * * * * * **
45598138 AGTTAATGTGAGCTTGTGCTTCCAGTTAGTATCTTAGGGCTCACAGGTTCAATACCGTAGCCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
*
45598203 AAAAC
66 AAAAT
* * * * * * * * *
45598208 AGTTAGCGCGAACCTACTCTCCCAACTGGTATCCTT-TGTCTCGTAGGTTCAATACCACA-ACTT
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTAT-CTTAAGGCTCGCAGGTTCAATACCACAGCCTC
*
45598271 TAAAAT
65 CAAAAT
* * * * * * * * * * * *
45598277 AATTAGCGTGAGCCTATGCTCTCAGTTGATATCCTAAAGCTCGTAGGTTCAATACTACAACCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45598342 AAAAT
66 AAAAT
* * * * * * **
45598347 AGTTAGCGCGAACTTACACTCTCATCTGGTATTTTAAGGCTCGCAGGTCCAATGTCACAGCCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45598412 AAAAT
66 AAAAT
* * * * * * *
45598417 AGTTAGCGCGAGCCTACGTTCCCAACTGGTATCTTAAGGCTCGCAGGTTTAATACCGCAACCTCT
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45598482 AAAAT
66 AAAAT
** * ** * ** ** *
45598487 AGTTAGTACGAGCTTACGCTCCCAACTGGTATCTTAAAACTCACAAATTCAATACCGTAG-CTTC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
*
45598551 AAAAC
66 AAAAT
* * * * * * * * *
45598556 AGTTAGCGCGAGCCTACACTACCAGCTGGTATCCTAAAGCTCGCAGGTTCAATATCGCAACATCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
*
45598621 AAAAC
66 AAAAT
** * * ** *
45598626 AGTTAATGCGATCTTACGTTCCCAGCTAATATCTTAAGGCTCGCACGTTCAATACCACAGCCTCC
1 AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
45598691 AAAAT
66 AAAAT
45598696 AGTTAG
1 AGTTAG
45598702 TGTCAGCTTA
Statistics
Matches: 758, Mismatches: 218, Indels: 18
0.76 0.22 0.02
Matches are distributed among these distances:
68 2 0.00
69 100 0.13
70 599 0.79
71 57 0.08
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (70 bp):
AGTTAGCGCGAGCTTACGCTCCCAGCTGGTATCTTAAGGCTCGCAGGTTCAATACCACAGCCTCC
AAAAT
Found at i:45600560 original size:18 final size:18
Alignment explanation
Indices: 45600534--45600571 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45600524 TAAACAAATC
* *
45600534 GGGCTCACACGCTCGTGT
1 GGGCCCACACGCCCGTGT
45600552 GGGCCCACACGCCCGTGT
1 GGGCCCACACGCCCGTGT
45600570 GG
1 GG
45600572 CTCACACAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.37, G:0.37, T:0.16
Consensus pattern (18 bp):
GGGCCCACACGCCCGTGT
Found at i:45604697 original size:19 final size:19
Alignment explanation
Indices: 45604637--45604699 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
45604627 ATAGGACAAC
*
45604637 AAAATTATTAAAA-ACAGTA
1 AAAATTATTAAAATA-ATTA
* * *
45604656 AATATTATTTAAAAT-GTTT
1 AAAATTA-TTAAAATAATTA
45604675 AAAATTATTAAAATAATTA
1 AAAATTATTAAAATAATTA
45604694 AAAATT
1 AAAATT
45604700 TGTAAAAGAA
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 7 0.21
19 21 0.62
20 6 0.18
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAATTATTAAAATAATTA
Found at i:45605428 original size:28 final size:28
Alignment explanation
Indices: 45605387--45605446 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
45605377 GTCATTATCA
45605387 ACCCCATAAATTATAAAACTCTTCCTAT
1 ACCCCATAAATTATAAAACTCTTCCTAT
** * * *
45605415 ACCCCATATGTTATGAGACTTTTCCTAT
1 ACCCCATAAATTATAAAACTCTTCCTAT
45605443 ACCC
1 ACCC
45605447 ATTAATATGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.30, G:0.05, T:0.33
Consensus pattern (28 bp):
ACCCCATAAATTATAAAACTCTTCCTAT
Found at i:45606502 original size:12 final size:12
Alignment explanation
Indices: 45606484--45606516 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
45606474 ATAATAGTGT
45606484 GCGTGGCCGTGG
1 GCGTGGCCGTGG
*
45606496 TCGTGGCCGTGG
1 GCGTGGCCGTGG
45606508 GCGTGGCCG
1 GCGTGGCCG
45606517 CAGACATAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.27, G:0.55, T:0.18
Consensus pattern (12 bp):
GCGTGGCCGTGG
Found at i:45610824 original size:28 final size:28
Alignment explanation
Indices: 45610784--45610846 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
45610774 GTCATTATCA
45610784 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * *
45610812 ACCCCATAAGTTATGAAGCTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
45610840 ACCCCAT
1 ACCCCAT
45610847 TAATATGGGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.30, G:0.06, T:0.32
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:45613853 original size:15 final size:15
Alignment explanation
Indices: 45613833--45613864 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
45613823 GTAACAAATC
45613833 AGTTGGCATTATCAA
1 AGTTGGCATTATCAA
45613848 AGTTGGCATTATCAA
1 AGTTGGCATTATCAA
45613863 AG
1 AG
45613865 GATAAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.31
Consensus pattern (15 bp):
AGTTGGCATTATCAA
Found at i:45615221 original size:22 final size:23
Alignment explanation
Indices: 45615172--45615222 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
45615162 TCATTTTATC
* *
45615172 TAATAAATAATTTAAATTAATTA
1 TAATAATTAATTTAAAATAATTA
*
45615195 T-ATAATTAA-TTAAAATATTTA
1 TAATAATTAATTTAAAATAATTA
45615216 TAATAAT
1 TAATAAT
45615223 ATATAAAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 11 0.46
22 12 0.50
23 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TAATAATTAATTTAAAATAATTA
Found at i:45617004 original size:20 final size:21
Alignment explanation
Indices: 45616970--45617023 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
45616960 TGATGATATT
*
45616970 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
45616991 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
45617011 TTTTATTATTTTA
1 TTATATTATTTTA
45617024 TTATTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:45619183 original size:46 final size:46
Alignment explanation
Indices: 45619131--45619446 Score: 490
Period size: 46 Copynumber: 6.9 Consensus size: 46
45619121 TGCTCTCTGC
45619131 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
45619177 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
45619223 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* * *
45619269 CATGAAATATGTAAAACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
*
45619315 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
*** **
45619361 TATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAATATGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* * * * *
45619407 CA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
45619447 TCATGTCAAA
Statistics
Matches: 251, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 250 1.00
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
Found at i:45620748 original size:4 final size:4
Alignment explanation
Indices: 45620739--45620775 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
45620729 AAAAAATGTA
45620739 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
45620776 GAATGTTAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:45620873 original size:15 final size:15
Alignment explanation
Indices: 45620849--45620894 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 15
45620839 ATTTAAATAG
*
45620849 AAATAAAAATATAAT
1 AAATAGAAATATAAT
45620864 AAATAGAAATATAAT
1 AAATAGAAATATAAT
45620879 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
45620895 ATAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 16 0.57
16 1 0.04
17 11 0.39
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:45620897 original size:44 final size:44
Alignment explanation
Indices: 45620843--45620929 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
45620833 ATTAGTATTT
45620843 AAATAGAAATA-A-AAATATAATAAATAGA-AATATAATAATAGTAG
1 AAATAGAAATAGATAAATA-AA-AAATAGATAA-ATAATAATAGTAG
* *
45620887 AAATATAAATAGATAAATAAAAATTAGATAAATAATAATAGTA
1 AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTA
45620930 TTACAATAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
44 28 0.74
45 5 0.13
46 5 0.13
ACGTcount: A:0.66, C:0.00, G:0.08, T:0.26
Consensus pattern (44 bp):
AAATAGAAATAGATAAATAAAAAATAGATAAATAATAATAGTAG
Found at i:45620914 original size:15 final size:14
Alignment explanation
Indices: 45620859--45620927 Score: 59
Period size: 15 Copynumber: 4.7 Consensus size: 14
45620849 AAATAAAAAT
45620859 ATAATAAATAGA-AA
1 ATAA-AAATAGATAA
* *
45620873 TATAATAATAGTAGAA
1 -ATAAAAATAG-ATAA
*
45620889 ATATAAATAGATAA
1 ATAAAAATAGATAA
45620903 ATAAAAATTAGATAA
1 ATAAAAA-TAGATAA
*
45620918 ATAATAATAG
1 ATAAAAATAG
45620928 TATTACAATA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
14 17 0.38
15 26 0.58
16 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.28
Consensus pattern (14 bp):
ATAAAAATAGATAA
Found at i:45632419 original size:26 final size:26
Alignment explanation
Indices: 45632390--45632499 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
45632380 TGGTACAAAT
45632390 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
45632416 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
45632442 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
45632468 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
45632494 TGATAA
1 TGATAA
45632500 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:45633981 original size:28 final size:26
Alignment explanation
Indices: 45633939--45634013 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
45633929 AAAAGTAGCT
* *
45633939 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* *
45633967 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
* *
45633993 AAATTACCGTTATATCCCTAG
1 AAATTACTGTTATACCCCTAG
45634014 GGTTAATTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.54
27 1 0.02
28 18 0.44
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:45634159 original size:27 final size:27
Alignment explanation
Indices: 45634117--45634283 Score: 228
Period size: 27 Copynumber: 6.2 Consensus size: 27
45634107 GAGGAAGCGT
*
45634117 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
45634144 TCTCGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
45634171 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
45634198 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
45634225 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
45634253 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
45634279 TCTGG
1 TCTGG
45634284 CAGCCATGCT
Statistics
Matches: 127, Mismatches: 12, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
26 5 0.04
27 107 0.84
28 15 0.12
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:45657388 original size:15 final size:15
Alignment explanation
Indices: 45657348--45657388 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
45657338 CTCCTTTTAA
45657348 AAAAAT-TATAAAAT
1 AAAAATATATAAAAT
*
45657362 -ATAATATAATAAAAT
1 AAAAATAT-ATAAAAT
45657377 AAAAATATATAA
1 AAAAATATATAA
45657389 TAGTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
13 4 0.18
14 1 0.05
15 11 0.50
16 6 0.27
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (15 bp):
AAAAATATATAAAAT
Found at i:45660284 original size:22 final size:22
Alignment explanation
Indices: 45660258--45660303 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
45660248 ATGCTGACAA
45660258 AAGTAAGTTTCAAATG-CTATCC
1 AAGTAAGTTTCAAATGTC-ATCC
*
45660280 AAGTAAGTTTTAAATGTCATCC
1 AAGTAAGTTTCAAATGTCATCC
45660302 AA
1 AA
45660304 AGCATGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (22 bp):
AAGTAAGTTTCAAATGTCATCC
Found at i:45661476 original size:3 final size:3
Alignment explanation
Indices: 45661468--45661533 Score: 96
Period size: 3 Copynumber: 22.0 Consensus size: 3
45661458 AAAAAGAAAT
* * * *
45661468 ATA ATA ATA GTA TTA ATA ATA ATA ATA ATA GTA ATA ATA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
45661516 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
45661534 CAATGTTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:45663111 original size:2 final size:2
Alignment explanation
Indices: 45663104--45663134 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
45663094 TTGTGGCTTT
45663104 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
45663135 TGCATTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45663655 original size:2 final size:2
Alignment explanation
Indices: 45663648--45663689 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
45663638 ATGAAATAAG
45663648 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
45663690 GGTTATTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45673094 original size:20 final size:20
Alignment explanation
Indices: 45673069--45673108 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
45673059 AAATTATATC
45673069 TTAATATAAAAATATAAAAA
1 TTAATATAAAAATATAAAAA
* *
45673089 TTAATATTACAATATAAAAA
1 TTAATATAAAAATATAAAAA
45673109 ATATATACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
TTAATATAAAAATATAAAAA
Found at i:45673271 original size:119 final size:121
Alignment explanation
Indices: 45673077--45673297 Score: 329
Period size: 119 Copynumber: 1.8 Consensus size: 121
45673067 TCTTAATATA
* * * *
45673077 AAAATATAAAAATTAATATTACAATATAAAAAATATATACACTAGTCAAACCAATCTTAATATTA
1 AAAATATAAAAATTAATATGACAATATAAAAAATACATACACTAGCCAAAACAATCTTAATATTA
*
45673142 ATTTTAACACAAATCTAATCATTCAAACAAAAATATAATGTTGAATGTTATATCTT
66 ATTTTAACACAAATCTAATAATTCAAACAAAAATATAATGTTGAATGTTATATCTT
* * *
45673198 AAAATATACAAATTAGTATGACAATATAAAAAA-ACATACACTA-CCAAAACTATCTTAATATTA
1 AAAATATAAAAATTAATATGACAATATAAAAAATACATACACTAGCCAAAACAATCTTAATATTA
* * *
45673261 CTTTTAACACAATTCTAATAATTCAAACAAAATTATA
66 ATTTTAACACAAATCTAATAATTCAAACAAAAATATA
45673298 TAATATTACC
Statistics
Matches: 89, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
119 50 0.56
120 9 0.10
121 30 0.34
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.32
Consensus pattern (121 bp):
AAAATATAAAAATTAATATGACAATATAAAAAATACATACACTAGCCAAAACAATCTTAATATTA
ATTTTAACACAAATCTAATAATTCAAACAAAAATATAATGTTGAATGTTATATCTT
Found at i:45673355 original size:3 final size:3
Alignment explanation
Indices: 45673309--45673336 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
45673299 AATATTACCT
45673309 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
45673337 CTAATATTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:45676331 original size:15 final size:15
Alignment explanation
Indices: 45676311--45676340 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
45676301 TTTAATTTTT
*
45676311 TATAAATTATAAAAA
1 TATAAACTATAAAAA
45676326 TATAAACTATAAAAA
1 TATAAACTATAAAAA
45676341 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:45682044 original size:5 final size:6
Alignment explanation
Indices: 45682029--45682061 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
45682019 CATAAAGATG
45682029 AAAAAT AAAAAT AAAAAT AAAAAT -AAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
45682062 GTTCCTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 21 0.81
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:45684116 original size:28 final size:28
Alignment explanation
Indices: 45684081--45684291 Score: 251
Period size: 28 Copynumber: 7.5 Consensus size: 28
45684071 ATTCTGCTAT
* * *
45684081 AAAGGCTTATTCTTTCATAGTTCGCTAG
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
*
45684109 AAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
*
45684137 AAAGGCTTATTCTTTCATAGTTCGCCAC
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
*
45684165 AAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
* * * *
45684193 AAAGGCTTATTCTTTCCTAGGTCTCCAT
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
* * * *
45684221 AAAGGCTTATTCTTTTGTTGTTCACCAT
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
* * * *
45684249 AAAGGATTATTCTTTCGTATTTCACCAG
1 AAAGGCTTATTCTTTCGTAGTTCGCCAC
*
45684277 AAAAGCTTATTCTTT
1 AAAGGCTTATTCTTT
45684292 TCTGACATGT
Statistics
Matches: 158, Mismatches: 25, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 158 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (28 bp):
AAAGGCTTATTCTTTCGTAGTTCGCCAC
Found at i:45684292 original size:56 final size:56
Alignment explanation
Indices: 45684081--45684291 Score: 278
Period size: 56 Copynumber: 3.8 Consensus size: 56
45684071 ATTCTGCTAT
*
45684081 AAAGGCTTATTCTTTCATAGTTCGCTAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCATAGTTCGCCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
*
45684137 AAAGGCTTATTCTTTCATAGTTCGCCACAAAGGCTTATTCTTTCGTAGTTCGTCAC
1 AAAGGCTTATTCTTTCATAGTTCGCCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
* * * * * * ** *
45684193 AAAGGCTTATTCTTTCCTAGGTCTCCATAAAGGCTTATTCTTTTGTTGTTCACCAT
1 AAAGGCTTATTCTTTCATAGTTCGCCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
* * * * *
45684249 AAAGGATTATTCTTTCGTATTTCACCAGAAAAGCTTATTCTTT
1 AAAGGCTTATTCTTTCATAGTTCGCCAGAAAGGCTTATTCTTT
45684292 TCTGACATGT
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 137 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.40
Consensus pattern (56 bp):
AAAGGCTTATTCTTTCATAGTTCGCCAGAAAGGCTTATTCTTTCGTAGTTCGTCAC
Found at i:45686944 original size:54 final size:54
Alignment explanation
Indices: 45686886--45686990 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
45686876 ATGACTTGGC
* * *
45686886 ACACGGGCGTGTGTGGCAACTTAGAGAGTTACATGGCCTAGCACACGGCCTAGT
1 ACACGGGCGTGTATGGCAAATTAAAGAGTTACATGGCCTAGCACACGGCCTAGT
45686940 ACACGGGCGTGTATGGCAAATTAAAGAGTTACATGGCCTAGCACACGGCCT
1 ACACGGGCGTGTATGGCAAATTAAAGAGTTACATGGCCTAGCACACGGCCT
45686991 GACCACATGG
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.27, C:0.24, G:0.30, T:0.20
Consensus pattern (54 bp):
ACACGGGCGTGTATGGCAAATTAAAGAGTTACATGGCCTAGCACACGGCCTAGT
Found at i:45688965 original size:43 final size:43
Alignment explanation
Indices: 45688918--45689003 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
45688908 AAAGTAAGTG
45688918 CATCCTAGCCCTATTTTTAATGTTCTTTATATTTTTGAAATCC
1 CATCCTAGCCCTATTTTTAATGTTCTTTATATTTTTGAAATCC
*
45688961 CATCCTAGCCCTGTTTTTAATGTTCTTTATATTTTTGAAATCC
1 CATCCTAGCCCTATTTTTAATGTTCTTTATATTTTTGAAATCC
45689004 TTGTAGCTCG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.22, C:0.21, G:0.08, T:0.49
Consensus pattern (43 bp):
CATCCTAGCCCTATTTTTAATGTTCTTTATATTTTTGAAATCC
Found at i:45689757 original size:48 final size:48
Alignment explanation
Indices: 45689697--45690162 Score: 600
Period size: 48 Copynumber: 9.7 Consensus size: 48
45689687 TCGTGCTAAA
* * *
45689697 TGTGCCTA-TGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATA
1 TGTGCC-AGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* ** *
45689745 TGTGTCAGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATATA
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* ** *
45689793 TTTGCCAGTGTAAGACCATGTCT-GGACATGGCATTGGCGATGATAGG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* * * *
45689840 TATGCCAGTGTAAGACCATGTTTGGGGCATGGCATCAGTGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
45689888 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* * ** *
45689936 TGTGCCAATGTAAGACCATGTCTGGGGCATGGCATTGGCGATGATATA
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* *
45689984 TGTGCTAGTGTAAGACCATGTCTTGGACATGGCATCAGCGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* *
45690032 TGTGCCGGTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
* * * *
45690080 TGTGCCAGCGCAAGACCATGTCTGGGACATGGCATCTGCGATGAGATG
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
*
45690128 TGGATTCC--TGTAAGACCATGT-TAGGGACATGGCAT
1 T-G-TGCCAGTGTAAGACCATGTCT-GGGACATGGCAT
45690163 TGGTACTTTA
Statistics
Matches: 370, Mismatches: 43, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
47 45 0.12
48 321 0.87
49 1 0.00
50 3 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (48 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCGATGATATG
Found at i:45698175 original size:19 final size:20
Alignment explanation
Indices: 45698151--45698194 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
45698141 AAGAAATTCT
*
45698151 TTTTAT-TGTTTTAATATCA
1 TTTTATGTGTTATAATATCA
* *
45698170 TTTTATGTGTTATAGTATGA
1 TTTTATGTGTTATAATATCA
45698190 TTTTA
1 TTTTA
45698195 CGAGTGCATG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.25, C:0.02, G:0.11, T:0.61
Consensus pattern (20 bp):
TTTTATGTGTTATAATATCA
Found at i:45703591 original size:16 final size:16
Alignment explanation
Indices: 45703570--45703607 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
45703560 ACAGATAAAA
45703570 AGGCATACTACCCCTT
1 AGGCATACTACCCCTT
45703586 AGGCATACTACCCCTT
1 AGGCATACTACCCCTT
45703602 AGGCAT
1 AGGCAT
45703608 GAACTCATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (16 bp):
AGGCATACTACCCCTT
Found at i:45707723 original size:13 final size:13
Alignment explanation
Indices: 45707705--45707731 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45707695 CTAGATATGA
45707705 TATTTTTATTTTT
1 TATTTTTATTTTT
45707718 TATTTTTATTTTT
1 TATTTTTATTTTT
45707731 T
1 T
45707732 GTTTAATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:45710904 original size:12 final size:12
Alignment explanation
Indices: 45710883--45710917 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
45710873 ACATGATTTC
*
45710883 CTCCTAAAATCT
1 CTCCTCAAATCT
45710895 CTCCTCAAATCT
1 CTCCTCAAATCT
*
45710907 CTCCACAAATC
1 CTCCTCAAATC
45710918 CCTTAGTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.29
Consensus pattern (12 bp):
CTCCTCAAATCT
Found at i:45719274 original size:10 final size:11
Alignment explanation
Indices: 45719243--45719279 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
45719233 CAATTCAATC
45719243 AATTTAATTAAA
1 AATTT-ATTAAA
45719255 AATTTATTAAA
1 AATTTATTAAA
45719266 AATTT-TTAAA
1 AATTTATTAAA
45719276 AATT
1 AATT
45719280 AAAATAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 9 0.36
11 11 0.44
12 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
AATTTATTAAA
Found at i:45720181 original size:2 final size:2
Alignment explanation
Indices: 45720174--45720200 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45720164 TTCAAGGAGG
45720174 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
45720201 TTTCTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:45721814 original size:124 final size:124
Alignment explanation
Indices: 45721594--45721837 Score: 384
Period size: 124 Copynumber: 2.0 Consensus size: 124
45721584 TAAATGCTTC
* *
45721594 AGTTGGTTTTGAAGTCTGGACTTAGCTTTTTCTCCCTGCCTTGCACAATTAGACAGATTGGTGAT
1 AGTTGGTTTCGAAGTCTGGACTTAGCTTTTTCTCCCTGCCTTGCACAACTAGACAGATTGGTGAT
* * *
45721659 TGTGGAGTTACTTTGGCAAAAATCTTTAGCATCCTCCTGGTGATATTTGATTAGCATCA
66 TGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGCATCA
* * *
45721718 AGTTGGTTTCGAAGTTTGTACTTAGCCTTTTT-TCCTTGCCTTGCACAACTAGACATG-TTGGTG
1 AGTTGGTTTCGAAGTCTGGACTTAG-CTTTTTCTCCCTGCCTTGCACAACTAGACA-GATTGGTG
45721781 ATTGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGC
64 ATTGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGC
45721838 TACAAGCAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
124 103 0.94
125 7 0.06
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.38
Consensus pattern (124 bp):
AGTTGGTTTCGAAGTCTGGACTTAGCTTTTTCTCCCTGCCTTGCACAACTAGACAGATTGGTGAT
TGTGGAGTTACCTTAGCAAAAACCTTTAGCATCCTCCTGGTGATATTTGATTAGCATCA
Found at i:45725759 original size:28 final size:29
Alignment explanation
Indices: 45725688--45725760 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
45725678 CCTAGGGTTT
*
45725688 TTAGGG-TTAAGGTTTTGCTAAAATAAGA
1 TTAGGGTTTAAAGTTTTGCTAAAATAAGA
* **
45725716 -TAGGGTTTAGTAGTTTTTTTAAAAT-AGA
1 TTAGGGTTTA-AAGTTTTGCTAAAATAAGA
45725744 TTAGGGTTTAAAGTTTT
1 TTAGGGTTTAAAGTTTT
45725761 AGTAGATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
27 5 0.14
28 12 0.32
29 20 0.54
ACGTcount: A:0.32, C:0.01, G:0.23, T:0.44
Consensus pattern (29 bp):
TTAGGGTTTAAAGTTTTGCTAAAATAAGA
Found at i:45725868 original size:34 final size:32
Alignment explanation
Indices: 45725812--45725890 Score: 92
Period size: 34 Copynumber: 2.5 Consensus size: 32
45725802 AAAAATTATT
*
45725812 TAAATTAGGG-TTTATGATTTTTAAATGAATTAAA
1 TAAATTAGGGTTTTATGAGTTTTAAAT-AA--AAA
*
45725846 TAAATTAGGGTTTTA-GAGTTTTAAATAAATA
1 TAAATTAGGGTTTTATGAGTTTTAAATAAAAA
45725877 -AAATTAGGGTTTTA
1 TAAATTAGGGTTTTA
45725891 AATAAATTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
30 14 0.33
31 2 0.05
33 2 0.05
34 20 0.48
35 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (32 bp):
TAAATTAGGGTTTTATGAGTTTTAAATAAAAA
Found at i:45725910 original size:22 final size:22
Alignment explanation
Indices: 45725863--45725910 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
45725853 GGGTTTTAGA
* *
45725863 GTTTTAAATAAATAAAATTAGG
1 GTTTTAAATAAATAAAACTAGC
*
45725885 GTTTTAAATAAATTAAACTAGC
1 GTTTTAAATAAATAAAACTAGC
45725907 GTTT
1 GTTT
45725911 ATGGTGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (22 bp):
GTTTTAAATAAATAAAACTAGC
Found at i:45725921 original size:86 final size:86
Alignment explanation
Indices: 45725811--45725974 Score: 231
Period size: 86 Copynumber: 1.9 Consensus size: 86
45725801 TAAAAATTAT
* * * * * *
45725811 TTAAATTAGGGTTTATGATTTTTAAATGAATTAAAT-AAATTAGGGTTTTAGAGTTTTAAATAAA
1 TTAAACTAGCGTTTATGATGTTTAAAT-AAATAAATAAAATTAAGGTTCTAGAGTTTTAAATAAA
45725875 TAAAATTAGGGTTTTAAATAAA
65 TAAAATTAGGGTTTTAAATAAA
* *
45725897 TTAAACTAGCGTTTATGGTGTTTAAATAAATAAATAAAATTAAGGTTCTAGGGTTTTAAATAAAT
1 TTAAACTAGCGTTTATGATGTTTAAATAAATAAATAAAATTAAGGTTCTAGAGTTTTAAATAAAT
*
45725962 TAAATTAGGGTTT
66 AAAATTAGGGTTT
45725975 AGGGTTAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 7 0.10
86 61 0.90
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (86 bp):
TTAAACTAGCGTTTATGATGTTTAAATAAATAAATAAAATTAAGGTTCTAGAGTTTTAAATAAAT
AAAATTAGGGTTTTAAATAAA
Found at i:45725957 original size:30 final size:29
Alignment explanation
Indices: 45725880--45725980 Score: 96
Period size: 30 Copynumber: 3.3 Consensus size: 29
45725870 ATAAATAAAA
* *
45725880 TTAGGGTTTTAAATAAATTAAACT-AGCGT
1 TTAGGGTTTTAAATAAATAAAATTAAG-GT
45725909 TTATGGTGTTTAAATAAATAAATAAAATTAAGGT
1 TTA-GG-GTTT---TAAATAAATAAAATTAAGGT
* *
45725943 TCTAGGGTTTTAAATAAATTAAATTAGGGT
1 T-TAGGGTTTTAAATAAATAAAATTAAGGT
45725973 TTAGGGTT
1 TTAGGGTT
45725981 AAAATTAATT
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
29 10 0.16
30 21 0.34
31 4 0.07
33 4 0.07
34 18 0.30
35 4 0.07
ACGTcount: A:0.39, C:0.03, G:0.19, T:0.40
Consensus pattern (29 bp):
TTAGGGTTTTAAATAAATAAAATTAAGGT
Found at i:45725991 original size:28 final size:30
Alignment explanation
Indices: 45725881--45726000 Score: 111
Period size: 28 Copynumber: 3.9 Consensus size: 30
45725871 TAAATAAAAT
* * *
45725881 TAGGGTTTTAAATAAATTAAACTAGCGTT-
1 TAGGGTTTAAAATAAATTAAATTAGGGTTC
* *
45725910 TATGGTGTTTAAATAAATAAATAAAATTAAGGTTC
1 TA-GG-GTTT--A-AAATAAATTAAATTAGGGTTC
*
45725945 TAGGGTTTTAAATAAATTAAATTAGGGTT-
1 TAGGGTTTAAAATAAATTAAATTAGGGTTC
*
45725974 TAGGG-TTAAAATTAATTAAATTAGGGT
1 TAGGGTTTAAAATAAATTAAATTAGGGT
45726001 GTAGTTTTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
28 20 0.27
29 7 0.09
30 20 0.27
31 4 0.05
33 4 0.05
34 18 0.24
35 2 0.03
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (30 bp):
TAGGGTTTAAAATAAATTAAATTAGGGTTC
Found at i:45726290 original size:126 final size:126
Alignment explanation
Indices: 45726063--45726437 Score: 556
Period size: 126 Copynumber: 3.0 Consensus size: 126
45726053 TTTGACCTTG
*
45726063 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
* *
45726128 TGTCAGTAAAATTACAT-AAAAAAGCTCCCACGTGGACTCTCTTTTTCTATAGTAGTTCCTA
66 TGTCAGCAAAATTTC-TGAAAAAAGCTCCCACGTGGACTCTCTTTTTCTATAGTAGTTCCTA
* * *
45726189 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTTAAAAATGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
* * * * ** ** *
45726254 TGTCAGCATAATTTCTGAAAAAAGCTCCTACATGGACGCTCTTTTTCTGCAGTAGTTTTTT
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACTCTCTTTTTCTATAGTAGTTCCTA
* *
45726315 AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
*
45726380 TGTTAGCAAAATTTCTGAAAAAAGCTCCCACGTGGA-TGCTCTTTTTCTATAGTAGTTC
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACT-CTCTTTTTCTATAGTAGTTC
45726438 ATGCTTGGCC
Statistics
Matches: 220, Mismatches: 27, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
125 1 0.00
126 219 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACTCTCTTTTTCTATAGTAGTTCCTA
Found at i:45730637 original size:42 final size:42
Alignment explanation
Indices: 45730532--45730701 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 42
45730522 CAGAGAACAT
* * *
45730532 ATACAATGCCAATGTCCCAGAC-GTGGTCTTACATGTAATCAA
1 ATACGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAA
* * *
45730574 ACATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATTC-G
1 ATA-CGATGCCAATGTCCCAGACAGGGTCTTACACGAAA-TCAA
* *
45730617 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAA
1 ATACGATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCAA
* **
45730660 A-AGTTGATGCCAATGTCCTGGAC-GTGGTCTTACACGAAATCA
1 ATA--CGATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCA
45730702 CATAACGGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 15
0.77 0.12 0.11
Matches are distributed among these distances:
42 34 0.33
43 40 0.38
44 30 0.29
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAA
Found at i:45730699 original size:86 final size:85
Alignment explanation
Indices: 45730532--45730699 Score: 223
Period size: 86 Copynumber: 2.0 Consensus size: 85
45730522 CAGAGAACAT
* * * *
45730532 ATACAATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCCCAGAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
45730597 AGGGTCTTACACGAAATTCG
66 AGGGTCTTACACGAAATTCG
* * **
45730617 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAA-AGTTGATGCCAATGTCCTGG
1 ATACAATGCCAATGTCCCAGACATGGTCTTACACGT-AAACAAACA-TCGATGCCAATGTCCCAG
45730681 AC-GTGGTCTTACACGAAAT
64 ACAG-GGTCTTACACGAAAT
45730700 CACATAACGG
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 35 0.49
86 37 0.51
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.24
Consensus pattern (85 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAGAC
AGGGTCTTACACGAAATTCG
Found at i:45734061 original size:24 final size:24
Alignment explanation
Indices: 45734031--45734122 Score: 121
Period size: 24 Copynumber: 3.8 Consensus size: 24
45734021 ACTGACATTT
*
45734031 AAATCCGCACACATAGTGCTATAC
1 AAATCCGCACACATAGTGCCATAC
* *
45734055 AAGTCCGCACACATAGTGCCACAC
1 AAATCCGCACACATAGTGCCATAC
* * *
45734079 AATTTCGCACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATAC
*
45734103 AAATTCGCACACATAGTGCC
1 AAATCCGCACACATAGTGCC
45734123 GAAGTCAATT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 60 1.00
ACGTcount: A:0.34, C:0.32, G:0.14, T:0.21
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATAC
Found at i:45743517 original size:17 final size:18
Alignment explanation
Indices: 45743477--45743519 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
45743467 GACTGGGAAA
* *
45743477 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
*
45743495 AAGATACATAT-AGGGCT
1 AGGATACATATAAGGGCT
45743512 AGGATACA
1 AGGATACA
45743520 CACCTGGCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:45743615 original size:30 final size:30
Alignment explanation
Indices: 45743572--45743667 Score: 113
Period size: 30 Copynumber: 3.2 Consensus size: 30
45743562 ATTGAGACAT
* * * *
45743572 TGGGCCCGATGATTGTATGGGTACTGTTGA
1 TGGGCTCGGTGATTGTGTGGGAACTGTTGA
* *
45743602 TGGGCTCGGTGATTGTGTGGGCACTATTGA
1 TGGGCTCGGTGATTGTGTGGGAACTGTTGA
*
45743632 TGGGC-CTGGTGATCGTGTGGGAACTGTTGA
1 TGGGCTC-GGTGATTGTGTGGGAACTGTTGA
45743662 TGGGCT
1 TGGGCT
45743668 GGTCCCATCA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
29 1 0.02
30 55 0.98
ACGTcount: A:0.14, C:0.14, G:0.41, T:0.32
Consensus pattern (30 bp):
TGGGCTCGGTGATTGTGTGGGAACTGTTGA
Found at i:45745172 original size:41 final size:41
Alignment explanation
Indices: 45745117--45745205 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
45745107 AGACTGTTAT
45745117 AAAAAATTATAAAA-TATAAATTAATTAAAATTACATAAATA
1 AAAAAATTATAAAATTA-AAATTAATTAAAATTACATAAATA
* *
45745158 AAAAAATTCA-AAAATTAAAATTAATTAAATTTACATAAATG
1 AAAAAATT-ATAAAATTAAAATTAATTAAAATTACATAAATA
45745199 AAAAAAT
1 AAAAAAT
45745206 ATTAAATAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 41 0.93
42 3 0.07
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.30
Consensus pattern (41 bp):
AAAAAATTATAAAATTAAAATTAATTAAAATTACATAAATA
Found at i:45746314 original size:3 final size:3
Alignment explanation
Indices: 45746293--45746345 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
45746283 TATATAAATG
* * *
45746293 AAT AAT ATT AGAT AA- AAT AAT AAT AAT AAT GAT GAT AAT AAT AAT
1 AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
45746338 AAAT AAT A
1 -AAT AAT A
45746346 TATATAAGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
2 2 0.05
3 36 0.84
4 5 0.12
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45747838 original size:21 final size:21
Alignment explanation
Indices: 45747805--45747858 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
45747795 TATAAAGAGC
* *
45747805 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAGATTTAAGGAGAAA
* *
45747826 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAGATTTAAGGAGAAA
*
45747847 TTTTAGAGATTT
1 TTTGAGAGATTT
45747859 TTGGCTAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (21 bp):
TTTGAGAGATTTAAGGAGAAA
Found at i:45750055 original size:40 final size:40
Alignment explanation
Indices: 45749969--45750185 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
45749959 AAGCCAAGTA
* * *
45749969 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
45750007 CCTTCGGGACATAGCCCGGATATCGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45750047 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45750087 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45750127 CCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
45750167 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45750186 TTATCATCCA
Statistics
Matches: 159, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 12 0.08
39 24 0.15
40 118 0.74
41 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45758250 original size:40 final size:40
Alignment explanation
Indices: 45758164--45758380 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
45758154 AAGCCAAGTA
* * *
45758164 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
45758202 CCTTCGGGACATAGCCCGGATATCGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45758242 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45758282 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
45758322 CCTTCGGGACTTAGCCC-GA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
45758362 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
45758381 TTATCATCCA
Statistics
Matches: 159, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 12 0.08
39 24 0.15
40 118 0.74
41 5 0.03
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45761035 original size:12 final size:12
Alignment explanation
Indices: 45761018--45761045 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
45761008 AAATCTATTT
45761018 TTTTTATTGTTG
1 TTTTTATTGTTG
45761030 TTTTTATTGTTG
1 TTTTTATTGTTG
45761042 TTTT
1 TTTT
45761046 CTTCCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (12 bp):
TTTTTATTGTTG
Found at i:45761161 original size:30 final size:30
Alignment explanation
Indices: 45761127--45761189 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
45761117 ACTTATTTTA
*
45761127 TTGTTAATTTTGTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* *
45761157 TTGTTAATTTTGTTATTTTTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
45761187 TTG
1 TTG
45761190 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:45769729 original size:50 final size:51
Alignment explanation
Indices: 45769652--45769774 Score: 185
Period size: 50 Copynumber: 2.4 Consensus size: 51
45769642 GACCATGGCA
* * * *
45769652 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
45769703 A-AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
* *
45769753 ACAAGTGAAAAGTGGTAGCTTC
1 ACAAGTGATAAGTGATAGCTTC
45769775 GGTTACCTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 46 0.71
51 19 0.29
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATG
Found at i:45769796 original size:31 final size:31
Alignment explanation
Indices: 45769756--45769866 Score: 177
Period size: 31 Copynumber: 3.6 Consensus size: 31
45769746 ACAAATGACA
*
45769756 AGTGAAAAGTGGTAGCTTCGGTTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
45769787 AATGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
45769818 GGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
45769849 AGTGAATAGTGGTAGCTT
1 AGTGAAAAGTGGTAGCTT
45769867 AAGCTAAAAG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:45772647 original size:42 final size:42
Alignment explanation
Indices: 45772597--45772820 Score: 220
Period size: 42 Copynumber: 5.0 Consensus size: 42
45772587 CTTCATTTTC
** * *
45772597 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
45772640 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
45772681 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
**
45772730 TCGATGCCATAGCCCAGCCCTGGTCTTACACGGATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC--AT---AT-TCACATA
* *
45772778 TCGATGCCATAGCCTAGCGATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
45772819 TC
1 TC
45772821 TCACTGATAC
Statistics
Matches: 162, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
41 11 0.07
42 64 0.40
43 2 0.01
45 2 0.01
47 2 0.01
48 45 0.28
49 36 0.22
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:45772745 original size:91 final size:92
Alignment explanation
Indices: 45772632--45772851 Score: 277
Period size: 97 Copynumber: 2.4 Consensus size: 92
45772622 TTACACATCT
45772632 TCACATAATGATGCCATAGCCCAGCTATGGTCTTACAC-AT-AT-TCACATATCGATGCCATAGC
1 TCACAT-ATGATGCCATAGCCCAGCTATGGTCTTACACGATCATATCACATATCGATGCCATAGC
*
45772694 CCAGCTATGGTCTTACACGTAATCACATA
65 CCAGCGATGGTCTTACACG-AATCACATA
**
45772723 TCACATATCGATGCCATAGCCCAGCCCTGGTCTTACACGGATCACATATCACATATCGATGCCAT
1 TCACATAT-GATGCCATAGCCCAGCTATGGTCTTACAC-GAT--CATATCACATATCGATGCCAT
*
45772788 AGCCTAGCGATGGTCTTACACGAATCACATA
62 AGCCCAGCGATGGTCTTACACGAATCACATA
* * * * *
45772819 TCTCA-CTGATACCATATCCCAGATATGGTCTTA
1 TCACATATGATGCCATAGCCCAGCTATGGTCTTA
45772852 TACAGTAGCA
Statistics
Matches: 111, Mismatches: 11, Indels: 11
0.83 0.08 0.08
Matches are distributed among these distances:
90 2 0.02
91 33 0.30
93 2 0.02
94 21 0.19
95 1 0.01
96 15 0.14
97 37 0.33
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (92 bp):
TCACATATGATGCCATAGCCCAGCTATGGTCTTACACGATCATATCACATATCGATGCCATAGCC
CAGCGATGGTCTTACACGAATCACATA
Found at i:45772786 original size:48 final size:48
Alignment explanation
Indices: 45772667--45772820 Score: 245
Period size: 48 Copynumber: 3.2 Consensus size: 48
45772657 TATGGTCTTA
*
45772667 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCCATGGTCTTACACG-AAT
* *
45772717 CACATATCACATATCGATGCCATAGCCCAGCCCTGGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCCATGGTCTTACACGAAT
* *
45772765 CACATATCACATATCGATGCCATAGCCTAGCGATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCCATGGTCTTACACGAAT
45772813 CACATATC
1 CACATATC
45772821 TCACTGATAC
Statistics
Matches: 97, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
48 54 0.56
49 37 0.38
50 6 0.06
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.25
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCCATGGTCTTACACGAAT
Found at i:45774806 original size:11 final size:11
Alignment explanation
Indices: 45774790--45774819 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
45774780 GTTTAACCAG
45774790 TTCAAAACACA
1 TTCAAAACACA
45774801 TTC-AAACACA
1 TTCAAAACACA
45774811 TTCAAAACA
1 TTCAAAACA
45774820 TATAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (11 bp):
TTCAAAACACA
Found at i:45775695 original size:40 final size:40
Alignment explanation
Indices: 45775635--45775765 Score: 144
Period size: 40 Copynumber: 3.4 Consensus size: 40
45775625 AACACACCAG
* * *
45775635 TTTGGCACCCTGTGCCTTATCGGATAATTCGAAGTAATAA
1 TTTGACACCCAGTGCCTTATCGGATAATCCGAAGTAATAA
*
45775675 TTTGACACCCAGTGCCTTATCGGGTAA-CCGAAGT-A-AA
1 TTTGACACCCAGTGCCTTATCGGATAATCCGAAGTAATAA
* * **
45775712 TTAG-CACCCAGTGCCTCATCAAATTAATCCGAAGTAATAA
1 TTTGACACCCAGTGCCTTATCGGA-TAATCCGAAGTAATAA
*
45775752 ATTGACACCCAGTG
1 TTTGACACCCAGTG
45775766 TCTCATCGAC
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
36 15 0.20
37 8 0.11
38 8 0.11
39 7 0.09
40 28 0.37
41 9 0.12
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (40 bp):
TTTGACACCCAGTGCCTTATCGGATAATCCGAAGTAATAA
Found at i:45775761 original size:41 final size:40
Alignment explanation
Indices: 45775659--45775772 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 40
45775649 CCTTATCGGA
* * * **
45775659 TAATTCGAAGTAATAATTTGACACCCAGTGCCTTATCGGG
1 TAATCCGAAGTAATAAATTGACACCCAGTGCCTCATCAAG
*
45775699 TAA-CCGAAG---TAAATT-AGCACCCAGTGCCTCATCAAAT
1 TAATCCGAAGTAATAAATTGA-CACCCAGTGCCTCATC-AAG
*
45775736 TAATCCGAAGTAATAAATTGACACCCAGTGTCTCATC
1 TAATCCGAAGTAATAAATTGACACCCAGTGCCTCATC
45775773 GACTCGAAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
35 1 0.02
36 20 0.33
37 3 0.05
38 6 0.10
39 5 0.08
40 3 0.05
41 21 0.35
42 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (40 bp):
TAATCCGAAGTAATAAATTGACACCCAGTGCCTCATCAAG
Found at i:45776296 original size:5 final size:5
Alignment explanation
Indices: 45776286--45776389 Score: 199
Period size: 5 Copynumber: 20.8 Consensus size: 5
45776276 ATTTAGTTAT
45776286 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
*
45776336 TATAA TATAA TATAA CATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
45776386 TATA
1 TATA
45776390 TATTTACTTA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 97 1.00
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:45776443 original size:42 final size:45
Alignment explanation
Indices: 45776371--45776455 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 45
45776361 TATAATATAA
*
45776371 TATAATATAATATAATATATATTTACTTAACTTTTAAGTTTTATTAT
1 TATAATAT-ATATAATATATATTTA-TTAACTTTAAAGTTTTATTAT
*
45776418 TATAATAT-TATAATATATA-TT-TTAACTTTAAATTTTTA
1 TATAATATATATAATATATATTTATTAACTTTAAAGTTTTA
45776456 ATTAAATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
42 15 0.42
44 2 0.06
45 11 0.31
47 8 0.22
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.54
Consensus pattern (45 bp):
TATAATATATATAATATATATTTATTAACTTTAAAGTTTTATTAT
Found at i:45778428 original size:5 final size:5
Alignment explanation
Indices: 45778404--45778488 Score: 63
Period size: 5 Copynumber: 16.8 Consensus size: 5
45778394 TTTTTATAAA
* *
45778404 TATAT TAT-T TA-AT TAGAT TATAT TAT-T ATATTAT TATATT GTAAAT
1 TATAT TATAT TATAT TATAT TATAT TATAT -TA-TAT TATA-T -TATAT
45778450 TATAT TA-AT TATAT TAT-T ATATTAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT -TA-TAT TATAT TATAT TATA
45778489 AAATAAATCA
Statistics
Matches: 66, Mismatches: 3, Indels: 22
0.73 0.03 0.24
Matches are distributed among these distances:
4 12 0.18
5 41 0.62
6 8 0.12
7 5 0.08
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:45778431 original size:8 final size:8
Alignment explanation
Indices: 45778420--45778482 Score: 81
Period size: 8 Copynumber: 7.2 Consensus size: 8
45778410 ATTTAATTAG
45778420 ATTATATT
1 ATTATATT
45778428 ATTATATT
1 ATTATATT
45778436 ATTATATTGT
1 ATTATA-T-T
45778446 AAATTATATT
1 --ATTATATT
45778456 AATTATATT
1 -ATTATATT
45778465 ATTATATT
1 ATTATATT
45778473 ATTATATT
1 ATTATATT
45778481 AT
1 AT
45778483 ATTATAAAAT
Statistics
Matches: 51, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
8 32 0.63
9 10 0.20
10 2 0.04
11 1 0.02
12 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (8 bp):
ATTATATT
Found at i:45778458 original size:42 final size:41
Alignment explanation
Indices: 45778407--45778490 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 41
45778397 TTATAAATAT
*
45778407 ATTATTTAATTAGATTA-TATTATTA-TATTATTATATTGTAA
1 ATTATTTAATTAGATTATTA-TATTATTA-TATTATATTATAA
*
45778448 ATTATATTAATTATATTATTATATTATTATATTATATTATAA
1 ATTAT-TTAATTAGATTATTATATTATTATATTATATTATAA
45778490 A
1 A
45778491 ATAAATCAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
41 5 0.13
42 29 0.76
43 4 0.11
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (41 bp):
ATTATTTAATTAGATTATTATATTATTATATTATATTATAA
Found at i:45778617 original size:2 final size:2
Alignment explanation
Indices: 45778602--45778643 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
45778592 AAGAAATTAT
45778602 TA TA TA T- TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45778642 TA
1 TA
45778644 AAGTAAATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:45779391 original size:18 final size:19
Alignment explanation
Indices: 45779358--45779400 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
45779348 AGTATTGATA
45779358 TTGAATTGAATGAAAATGTG
1 TTGAATTG-ATGAAAATGTG
45779378 TTGAATTG-TGAAAATGTG
1 TTGAATTGATGAAAATGTG
45779396 -TGAAT
1 TTGAAT
45779401 ATATGGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
20 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (19 bp):
TTGAATTGATGAAAATGTG
Found at i:45783283 original size:18 final size:18
Alignment explanation
Indices: 45783257--45783293 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
45783247 ATCATTCGTT
*
45783257 TAACTAGTTCAAAACACA
1 TAACCAGTTCAAAACACA
45783275 TAACCAGTTCAAAACACA
1 TAACCAGTTCAAAACACA
45783293 T
1 T
45783294 TCAAACACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.24, G:0.05, T:0.22
Consensus pattern (18 bp):
TAACCAGTTCAAAACACA
Found at i:45783298 original size:11 final size:11
Alignment explanation
Indices: 45783282--45783311 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
45783272 ACATAACCAG
45783282 TTCAAAACACA
1 TTCAAAACACA
45783293 TTC-AAACACA
1 TTCAAAACACA
45783303 TTCAAAACA
1 TTCAAAACA
45783312 TATCAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (11 bp):
TTCAAAACACA
Found at i:45783301 original size:10 final size:10
Alignment explanation
Indices: 45783286--45783318 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
45783276 AACCAGTTCA
45783286 AAACACATTC
1 AAACACATTC
45783296 AAACACATTC
1 AAACACATTC
45783306 AAA-ACATATC
1 AAACACAT-TC
45783316 AAA
1 AAA
45783319 AATAATCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (10 bp):
AAACACATTC
Found at i:45785546 original size:25 final size:25
Alignment explanation
Indices: 45785517--45785566 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
45785507 TTCGTAACAT
45785517 AACTCAAGTTCATTTTCATCAATGA
1 AACTCAAGTTCATTTTCATCAATGA
45785542 AACTCAAGTTCATTTTCATCAATGA
1 AACTCAAGTTCATTTTCATCAATGA
45785567 CATACCTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (25 bp):
AACTCAAGTTCATTTTCATCAATGA
Found at i:45785854 original size:72 final size:72
Alignment explanation
Indices: 45785736--45785995 Score: 292
Period size: 72 Copynumber: 3.6 Consensus size: 72
45785726 ATGCCCGCAT
* * * * *
45785736 TTGAGCTACTCAC-GGATATGTACACAAAGTTAGCACCCGGAACCCAAAGCATTATCATGTAATG
1 TTGAGCTACTCACAGG-TTTATACACAAAGTCAACACCCGGACCCCAAAGCATTATCATGTAATG
45785800 TCCGCTCA
65 TCCGCTCA
* *
45785808 TTGAGCTACTCACAGGTTTATACTCAAAGTCAACACCTGGACCCCAAAGCATTATCATGTAATGT
1 TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCGGACCCCAAAGCATTATCATGTAATGT
**
45785873 CCATTCA
66 CCGCTCA
* * ** * * *
45785880 TTGAGTTACTCACGGGTTTATACACAAAGTCAGTACCCAGACCCCAAAGCATTAGCACG-ATATG
1 TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCGGACCCCAAAGCATTATCATGTA-ATG
45785944 -CTCGCTCA
65 TC-CGCTCA
** * *
45785952 GCGAGTTACTCACAGGTTTATACACAAAGTCAATACCCGGACCC
1 TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCGGACCC
45785996 ACATTACATA
Statistics
Matches: 160, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
71 2 0.01
72 156 0.98
73 2 0.01
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (72 bp):
TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCGGACCCCAAAGCATTATCATGTAATGT
CCGCTCA
Found at i:45786311 original size:19 final size:19
Alignment explanation
Indices: 45786282--45786324 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
45786272 TCGAATCTTT
45786282 ATCAA-GAATATCCATATA
1 ATCAATGAATATCCATATA
45786300 ATCAATGAATATCCATATA
1 ATCAATGAATATCCATATA
45786319 ATCAAT
1 ATCAAT
45786325 CATACAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (19 bp):
ATCAATGAATATCCATATA
Found at i:45788303 original size:36 final size:36
Alignment explanation
Indices: 45788256--45788330 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
45788246 GCTTTGAACC
45788256 CTTGAAACCCTAATTC-TCTTTCTT-TCTCTTTTCTTT
1 CTTGAAACCCTAATTCTTCTTT-TTCTCT-TTTTCTTT
45788292 CTTGAAACCCTAATTCTTCTTTTTCTCTTTTTCTTT
1 CTTGAAACCCTAATTCTTCTTTTTCTCTTTTTCTTT
45788328 CTT
1 CTT
45788331 TCTTCTCTGT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
36 29 0.78
37 8 0.22
ACGTcount: A:0.13, C:0.27, G:0.03, T:0.57
Consensus pattern (36 bp):
CTTGAAACCCTAATTCTTCTTTTTCTCTTTTTCTTT
Found at i:45788338 original size:19 final size:18
Alignment explanation
Indices: 45788308--45788343 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
45788298 ACCCTAATTC
*
45788308 TTCTTTTTCTCTTTTTCT
1 TTCTTTTTCTCTGTTTCT
45788326 TTCTTTCTTCTCTGTTTC
1 TTCTTT-TTCTCTGTTTC
45788344 AATCTATCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (18 bp):
TTCTTTTTCTCTGTTTCT
Found at i:45793643 original size:250 final size:250
Alignment explanation
Indices: 45793197--45793726 Score: 686
Period size: 250 Copynumber: 2.1 Consensus size: 250
45793187 TACGGTTCTA
* * * * * *
45793197 ACACTAACTCAATCAAATATATTATTAATATTAGAAATCTTAACACAAGCGTATGCGTGTGGAAA
1 ACACAAACTCAATCAAATACATTATTAATACTACAAATCCTAACACAAACGTATGCGTGTGGAAA
** * * * *
45793262 CCACAAATTTTTAACATAAACGTCTGTTTAAAAATCACATACAATAAATTATAAAACGTGTGGTT
66 CCACAAATTTAAAACACAAACATCTGTTTAAAAATCACATACAATAAATAATAAAACGTATGGTT
* *
45793327 TGAAACTAATTACTAATAACACATGAAATATGTAAGTTATTAAAATTAAAAAAAAAAGTAGATTA
131 TGAAACTAATTAATAATAACACATGAAATATGTAACTTATTAAAATTAAAAAAAAAAGTAGATTA
*
45793392 AATTGCTTATCATGGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
196 AATTGCTTATCATAGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
* * *
45793447 ACACCAACTCAATCAAATGCATTATTAATACTACAAATCCTATCACAAACGTATGCGTGTGGAAA
1 ACACAAACTCAATCAAATACATTATTAATACTACAAATCCTAACACAAACGTATGCGTGTGGAAA
* * * * * * * *
45793512 CCAGAAATTTAAAACACAAATATTTGTTTTAGAAATCATATGCAATAAATAATGAAATGTATGGT
66 CCACAAATTTAAAACACAAACATCTG-TTTAAAAATCACATACAATAAATAATAAAACGTATGGT
* * *
45793577 TTGAAACTAATTAATAATAACACATGAAAATATGTATCTTATTAAAA-T-GAAAAAAAATTAGAT
130 TTGAAACTAATTAATAATAACACATG-AAATATGTAACTTATTAAAATTAAAAAAAAAAGTAGAT
* ** * * * *
45793640 TAAATTGTTTATCATAGTGTTGTCATCAATCTTGAGTTGGTGTTGAGTTAACTTGTG
194 TAAATTGCTTATCATAGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
* *
45793697 ATACAAACTCAATTAAATACATTATTAATA
1 ACACAAACTCAATCAAATACATTATTAATA
45793727 TATATAATTG
Statistics
Matches: 239, Mismatches: 39, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
250 164 0.69
251 57 0.24
252 18 0.08
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (250 bp):
ACACAAACTCAATCAAATACATTATTAATACTACAAATCCTAACACAAACGTATGCGTGTGGAAA
CCACAAATTTAAAACACAAACATCTGTTTAAAAATCACATACAATAAATAATAAAACGTATGGTT
TGAAACTAATTAATAATAACACATGAAATATGTAACTTATTAAAATTAAAAAAAAAAGTAGATTA
AATTGCTTATCATAGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
Found at i:45794922 original size:25 final size:27
Alignment explanation
Indices: 45794885--45794937 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
45794875 TCAAACATGC
45794885 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
45794911 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
45794937 A
1 A
45794938 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:45796459 original size:26 final size:26
Alignment explanation
Indices: 45796424--45796583 Score: 257
Period size: 26 Copynumber: 6.2 Consensus size: 26
45796414 TGAAATGCCC
*
45796424 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
45796450 ATCATAGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
45796476 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
45796502 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* **
45796528 ATCATGGAATATTTACCTAATTCATT
1 ATCATGGAACATTTACCTAACCCATT
45796554 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
45796580 ATCA
1 ATCA
45796584 ATTTGTACCA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 121 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:45796501 original size:52 final size:52
Alignment explanation
Indices: 45796424--45796583 Score: 284
Period size: 52 Copynumber: 3.1 Consensus size: 52
45796414 TGAAATGCCC
* * *
45796424 ATCATGGAACATTTACCTAAACCATTATCATAGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
45796476 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
*
45796528 ATCATGGAATATTTACCTAATTCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
45796580 ATCA
1 ATCA
45796584 ATTTGTACCA
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 104 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.34
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
Found at i:45797595 original size:117 final size:118
Alignment explanation
Indices: 45797435--45797675 Score: 450
Period size: 117 Copynumber: 2.1 Consensus size: 118
45797425 AATGAAAGTA
45797435 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTGCAATAAAA
1 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTGCAATAAAA
* *
45797500 TTTTACAAAGTTTAATTCAGATACTTATTCGTAGATTTAAAAGGGTTAAAGAT
66 TTTTACAAAGTTTAATTCAAATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
45797553 AAGTTTAAGCA-TAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTGCAATAAAA
1 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTGCAATAAAA
45797617 TTTTACAAAGTTTAATTCAAATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
66 TTTTACAAAGTTTAATTCAAATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
45797670 -AGTTTA
1 AAGTTTA
45797676 CTTGAAATGA
Statistics
Matches: 121, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
116 6 0.05
117 104 0.86
118 11 0.09
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (118 bp):
AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTGCAATAAAA
TTTTACAAAGTTTAATTCAAATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
Found at i:45803797 original size:26 final size:26
Alignment explanation
Indices: 45803760--45803812 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
45803750 TGTTATAGAG
*
45803760 AGTGACTCTTATACAACTACAACAAC
1 AGTGACTCTTATACAACTAAAACAAC
* *
45803786 AGTGACTTTTATACACCTAAAACAAC
1 AGTGACTCTTATACAACTAAAACAAC
45803812 A
1 A
45803813 TGTCGTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.25
Consensus pattern (26 bp):
AGTGACTCTTATACAACTAAAACAAC
Found at i:45805600 original size:28 final size:26
Alignment explanation
Indices: 45805535--45805600 Score: 60
Period size: 28 Copynumber: 2.4 Consensus size: 26
45805525 GTACAAATCT
* * *
45805535 TGTTATATATAAATTTTTATGTATAG
1 TGTTTTATTTAAATTTTTATGTATAA
*
45805561 TGTCCTTAATTTAAATTTTATTATGTATAA
1 TGT--TTTATTTAAA-TTT-TTATGTATAA
45805591 TGTTTTATTT
1 TGTTTTATTT
45805601 TTTATAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
26 3 0.10
28 13 0.42
29 3 0.10
30 12 0.39
ACGTcount: A:0.30, C:0.03, G:0.09, T:0.58
Consensus pattern (26 bp):
TGTTTTATTTAAATTTTTATGTATAA
Found at i:45807115 original size:28 final size:26
Alignment explanation
Indices: 45807057--45807121 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 26
45807047 ATGATATATG
45807057 TAAAATA--TATT-TTTATTTTATAA
1 TAAAATATTTATTATTTATTTTATAA
* *
45807080 TTACATATTTATTATTTGATTTTATGAA
1 TAAAATATTTATTATTT-ATTTTAT-AA
45807108 TAAAATATTTATTA
1 TAAAATATTTATTA
45807122 ATTAAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 5 0.15
25 4 0.12
26 3 0.09
27 7 0.21
28 14 0.42
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (26 bp):
TAAAATATTTATTATTTATTTTATAA
Found at i:45808648 original size:37 final size:37
Alignment explanation
Indices: 45808598--45808720 Score: 228
Period size: 37 Copynumber: 3.3 Consensus size: 37
45808588 TTATTACGAA
45808598 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
45808635 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
45808672 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGA
1 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
*
45808709 GTCTCACCCGGA
1 GTCTTACCCGGA
45808721 ATATATTTCC
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 84 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
Found at i:45808823 original size:48 final size:48
Alignment explanation
Indices: 45808765--45809388 Score: 1041
Period size: 48 Copynumber: 13.0 Consensus size: 48
45808755 TGTTACAACA
45808765 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
45808813 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45808861 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
45808909 TTCACATTAGCCCTTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
45808957 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
45809005 TTCACATTAGCCATTCGGATTTACCACATTTACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45809053 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
** * *
45809101 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
45809149 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * * *
45809197 TTCACATTAGCCATTCGGGTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
45809245 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
45809293 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45809341 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45809389 ATATTATCTT
Statistics
Matches: 531, Mismatches: 45, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 531 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:45808882 original size:96 final size:96
Alignment explanation
Indices: 45808765--45809388 Score: 1149
Period size: 96 Copynumber: 6.5 Consensus size: 96
45808755 TGTTACAACA
45808765 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
45808830 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
*
45808861 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCCTTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
45808926 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
*
45808957 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* *
45809022 GATTTACCACATTTACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
45809053 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* *
45809118 GCTTTACCACATATACATATCTTATACATAT
66 GCTTTACCACATATACATATCTCATATATAT
*
45809149 TTCACATTAGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
* *
45809214 GGTTTACCACATATACATATCTCATACATAT
66 GCTTTACCACATATACATATCTCATATATAT
* *
45809245 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATATTTCACATTAGCCATTCG
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
45809310 GCTTTACCACATATACATATCTCATATATAT
66 GCTTTACCACATATACATATCTCATATATAT
45809341 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
45809389 ATATTATCTT
Statistics
Matches: 510, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 510 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (96 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATTCG
GCTTTACCACATATACATATCTCATATATAT
Found at i:45810596 original size:2 final size:2
Alignment explanation
Indices: 45810589--45810614 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
45810579 CCATTGCCGA
45810589 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
45810615 CATCAAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:45814101 original size:22 final size:22
Alignment explanation
Indices: 45814076--45814118 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
45814066 AATTAAATTT
45814076 TTAAATT-CAAAAAATATAAAAA
1 TTAAATTCCAAAAAAT-TAAAAA
*
45814098 TTAAATTCCTAAAAATTAAAA
1 TTAAATTCCAAAAAATTAAAA
45814119 TAAGAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (22 bp):
TTAAATTCCAAAAAATTAAAAA
Found at i:45814493 original size:25 final size:25
Alignment explanation
Indices: 45814459--45814535 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
45814449 TCTCCCTCCC
45814459 TTCCTTCCAATTCTTAATT-TTCTTT
1 TTCCTTCCAATTCTT-ATTCTTCTTT
* *
45814484 TTCCTTCCAATTCTTCTTCTTTTTT
1 TTCCTTCCAATTCTTATTCTTCTTT
* *
45814509 TTCCTTCCAATTCTTCTTCTTTTTT
1 TTCCTTCCAATTCTTATTCTTCTTT
45814534 TT
1 TT
45814536 TTCTTTTGGG
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
24 2 0.04
25 47 0.96
ACGTcount: A:0.10, C:0.26, G:0.00, T:0.64
Consensus pattern (25 bp):
TTCCTTCCAATTCTTATTCTTCTTT
Found at i:45819965 original size:40 final size:40
Alignment explanation
Indices: 45819920--45819999 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
45819910 GGGGACAAGA
45819920 ATGGTCAAAAAGTCAAATTAGGTAGGTTTTGGTAGCTTAT
1 ATGGTCAAAAAGTCAAATTAGGTAGGTTTTGGTAGCTTAT
*
45819960 ATGGTCAAAAAGTCAAATTAGGTGGGTTTTGGTAGCTTAT
1 ATGGTCAAAAAGTCAAATTAGGTAGGTTTTGGTAGCTTAT
45820000 TTGACTAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.35
Consensus pattern (40 bp):
ATGGTCAAAAAGTCAAATTAGGTAGGTTTTGGTAGCTTAT
Found at i:45820929 original size:48 final size:48
Alignment explanation
Indices: 45820810--45821033 Score: 219
Period size: 46 Copynumber: 4.8 Consensus size: 48
45820800 GATAATGGGT
* * * *
45820810 GATATGTATGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-A
1 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
* * * *
45820857 -ACA-TGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCAGCCTCGA
1 GATATTTA-AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
* *
45820904 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATC-GACATTGA
1 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CCTCGA
* * *
45820952 GATGA---GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGT
1 GAT-ATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
** * *
45820998 GATATACAAGCTAGTGTAAGACCTATCTGGGACATG
1 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATG
45821034 GTGTTAGCTT
Statistics
Matches: 146, Mismatches: 21, Indels: 19
0.78 0.11 0.10
Matches are distributed among these distances:
45 2 0.01
46 73 0.50
47 3 0.02
48 65 0.45
49 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (48 bp):
GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGA
Found at i:45820971 original size:94 final size:94
Alignment explanation
Indices: 45820810--45821033 Score: 297
Period size: 94 Copynumber: 2.4 Consensus size: 94
45820800 GATAATGGGT
* * * *
45820810 GATATGTATGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAACATGAGAGCCAGTGTAA
1 GATATATAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGACACAACATGAGAGCCAGTGTAA
45820875 GACATGTCTGAGACATGCATCAGCCTCGA
66 GACATGTCTGAGACATGCATCAGCCTCGA
* ** * *
45820904 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATC-GACATTGAGATGAGAGCTAGTGTA
1 GATATATAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGACA-CAACATGAGAGCCAGTGTA
* * *
45820968 AGACATGTCTGGGACATGCATCGGCCTCGT
65 AGACATGTCTGAGACATGCATCAGCCTCGA
* * *
45820998 GATATACAAGCTAGTGTAAGACCTATCTGGGACATG
1 GATATATAAGCTAGTGTAAGACATGTCTGGGACATG
45821034 GTGTTAGCTT
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 3 0.03
94 111 0.97
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (94 bp):
GATATATAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGACACAACATGAGAGCCAGTGTAA
GACATGTCTGAGACATGCATCAGCCTCGA
Found at i:45820990 original size:46 final size:46
Alignment explanation
Indices: 45820819--45821176 Score: 214
Period size: 46 Copynumber: 7.6 Consensus size: 46
45820809 TGATATGTAT
* * * *
45820819 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCA-CAACATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GACATCGAGATGAGA
* * * *
45820865 GCCAGTGTAAGACATGTCTGAGACATGCATC-AGCCTCGAGAT-ATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGA-CATCGAGATGA---GA
*
45820913 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATGAGA
* * * * *
45820959 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGAT-GA-GA
* * * * *
45821007 GCTAGTGTAAGACCTATCTGGGACATG-GT-GTTAGC-TTGTAG-TGTG-
1 GCTAGTGTAAGACATGTCTGGGACATGCATCG--A-CATCG-AGATGAGA
* * *
45821052 TC-AGTGTAAGACCA-GTCTGGGACATGGCATCAACACCGATAGATGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCG--AGATGAGA
* * * * * *
45821100 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATCG--AGATGAGA
*
45821149 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGA-CATGTCTGGGACATG
45821177 GCGTCGGCAT
Statistics
Matches: 242, Mismatches: 46, Indels: 45
0.73 0.14 0.14
Matches are distributed among these distances:
44 20 0.08
45 7 0.03
46 76 0.31
47 5 0.02
48 68 0.28
49 53 0.22
50 13 0.05
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACATCGAGATGAGA
Found at i:45821118 original size:141 final size:140
Alignment explanation
Indices: 45820916--45821177 Score: 372
Period size: 141 Copynumber: 1.9 Consensus size: 140
45820906 TATTTAAGCT
* ** *
45820916 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATGAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAACACCGAGATGAGAGCCAGTGTAAGACATGTCTGGG
*
45820981 ACAT-GCATCGGCCTCG-TGATAT-ACAAGCTAGTGTAAGACC-TATCTGGGACATGGTGTTAGC
66 ACATGGCATCGGCCTCGCT-ATATGA-AAGCCAGTGTAAGACCATATCTGGGACATGGTGTTAGC
45821042 TTGTAGTGTGTC
129 TTGTAGTGTGTC
*
45821054 AGTGTAAGACCA-GTCTGGGACATGGCATCAACACCGATAGATGAGAGCCAGTGTAAGACCTGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAACACCG--AGATGAGAGCCAGTGTAAGACATGTC
*
45821118 TGGGACATGGCATCGGCCTCGCTATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGG
62 TGGGACATGGCATCGGCCTCGCTATATGAAAGCCAGTGTAAGACCATATCTGGGACATGG
45821178 CGTCGGCATC
Statistics
Matches: 109, Mismatches: 7, Indels: 11
0.86 0.06 0.09
Matches are distributed among these distances:
138 20 0.18
139 11 0.10
141 32 0.29
142 31 0.28
143 15 0.14
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACACCGAGATGAGAGCCAGTGTAAGACATGTCTGGG
ACATGGCATCGGCCTCGCTATATGAAAGCCAGTGTAAGACCATATCTGGGACATGGTGTTAGCTT
GTAGTGTGTC
Found at i:45824106 original size:93 final size:93
Alignment explanation
Indices: 45823975--45824146 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
45823965 ACCCATAAGT
** * *
45823975 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGAATCAAATCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACGTTCGCATCCATAAGTGAACTCGGAATCAAATCAA
45824040 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
45824068 GAACTCGGACTCAACTCAACAAGTTCAGACGCTT-GCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACAAGCTCAGACG-TTCGCATCCATAAGTGAACTCGGAATCAAATCA
*
45824132 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
45824147 CAAATATCCC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
93 68 0.97
94 2 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCAGACGTTCGCATCCATAAGTGAACTCGGAATCAAATCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:45824123 original size:46 final size:46
Alignment explanation
Indices: 45823967--45824142 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
45823957 TGTAACCCAC
* *
45823967 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCG-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTT-GCAT
* * * * *
45824013 CCATAAGTGAACTCGGAATCAAATCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTTGCAT
* *** * * *
45824059 ACATCTCTCGAACTCGGACTCAACTCAACAAGTTCAGACGCTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTTGCAT
*
45824106 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
45824143 TGCCCAAATA
Statistics
Matches: 101, Mismatches: 25, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
46 69 0.68
47 31 0.31
48 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTTGCAT
Done.