Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 157 of 328
Found at i:45833137 original size:46 final size:45
Alignment explanation
Indices: 45833087--45833258 Score: 215
Period size: 46 Copynumber: 3.8 Consensus size: 45
45833077 TGGTTGAGCA
45833087 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * *
45833133 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT-TATG-GA-T-GCGAAG
45833179 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
45833225 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45833259 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 96 0.89
47 2 0.02
48 3 0.03
49 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:45833241 original size:92 final size:92
Alignment explanation
Indices: 45833084--45833253 Score: 313
Period size: 92 Copynumber: 1.8 Consensus size: 92
45833074 GGATGGTTGA
* *
45833084 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45833149 TGAGTCCGAGTTCGTGAATGTAACTAG
66 TGAGTCCGAGTTCGTGAATGTAACTAG
*
45833176 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
45833241 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
45833254 ACTTAGGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
92 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAATGTAACTAG
Found at i:45836836 original size:38 final size:38
Alignment explanation
Indices: 45836773--45836961 Score: 193
Period size: 38 Copynumber: 4.9 Consensus size: 38
45836763 ATTTGATGTG
* *
45836773 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCGTGCTGGAATTA
*
45836813 TATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG-AATTA
* * *
45836851 TATCCGGGTTAAATCTCGCAAGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * * *
45836889 TAACCGGGTTAAATCCCGCAGGCCTGGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
* * *
45836927 TATCTGAGTTTAAAGTCCCGTAGGCTTCGTGCTGG
1 TATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGG
45836962 TGTTATGTTT
Statistics
Matches: 128, Mismatches: 16, Indels: 10
0.83 0.10 0.06
Matches are distributed among these distances:
37 2 0.02
38 88 0.69
39 13 0.10
40 25 0.20
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGAATTA
Found at i:45844306 original size:30 final size:30
Alignment explanation
Indices: 45844272--45844328 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
45844262 ATTGATTTTC
* * *
45844272 AAGTCTACGGGTAAAATGGTCGTTTTGTGA
1 AAGTCTAAGGGAAAAATGGTCATTTTGTGA
45844302 AAGTCTAAGGGAAAAATGGTCATTTTG
1 AAGTCTAAGGGAAAAATGGTCATTTTG
45844329 CCCAATTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.32
Consensus pattern (30 bp):
AAGTCTAAGGGAAAAATGGTCATTTTGTGA
Found at i:45844725 original size:48 final size:47
Alignment explanation
Indices: 45844663--45844836 Score: 208
Period size: 48 Copynumber: 3.7 Consensus size: 47
45844653 TGATATGTGT
* * *
45844663 GCTAGTGTAAGACATGTCTAGGACATACATTGGCCTTGAGATATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATA-AA
* * * *
45844711 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAT-GAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAAA
* *
45844757 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCC-TCACGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GATATA-AA
*
45844805 GCTAGTGTAAGACTTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
45844837 AGTTTGTGGT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
45 2 0.02
46 36 0.34
47 2 0.02
48 62 0.58
49 5 0.05
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAAA
Found at i:45844824 original size:94 final size:95
Alignment explanation
Indices: 45844663--45844836 Score: 262
Period size: 94 Copynumber: 1.8 Consensus size: 95
45844653 TGATATGTGT
* * * *
45844663 GCTAGTGTAAGACATGTCTAGGACATACATTGGCCTTGAGATATATAAGCTAGTGTAAGACATGT
1 GCTAGTGTAAAACATGTCTAGGACATACATCGGCCTTCAGATATACAAGCTAGTGTAAGACATGT
45844728 CTGGGACAT-GCATCGACATTGAGATGAGA
66 CTGGGACATGGCATCGACATTGAGATGAGA
* * *
45844757 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCC-TCACGATATACAAGCTAGTGTAAGACTTG
1 GCTAGTGTAAAACATGTCTAGGACATACATCGGCCTTCA-GATATACAAGCTAGTGTAAGACATG
45844821 TCTGGGACATGGCATC
65 TCTGGGACATGGCATC
45844837 AGTTTGTGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
93 2 0.03
94 64 0.90
95 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
GCTAGTGTAAAACATGTCTAGGACATACATCGGCCTTCAGATATACAAGCTAGTGTAAGACATGT
CTGGGACATGGCATCGACATTGAGATGAGA
Found at i:45847567 original size:17 final size:17
Alignment explanation
Indices: 45847545--45847579 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
45847535 GTTATAGATG
45847545 CCTTTATCATGGGAGTA
1 CCTTTATCATGGGAGTA
45847562 CCTTTATCATGGGAGTA
1 CCTTTATCATGGGAGTA
45847579 C
1 C
45847580 AAAACGACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (17 bp):
CCTTTATCATGGGAGTA
Found at i:45852538 original size:69 final size:69
Alignment explanation
Indices: 45852429--45852911 Score: 465
Period size: 69 Copynumber: 7.0 Consensus size: 69
45852419 AGCTAGTGAT
* * * *
45852429 AGCAAAGCTCCCAAG-T-T-ATATTAAGGCTCGCAGGATAAAAACTGCAGCCTGTAACACAATTA
1 AGCAAAGCTCCC-AGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTAACACAGTTA
* *
45852491 GCAAC
65 GCGAG
* * * * * * *
45852496 AGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAA-TCGCAGTCTCCAACATAGTTA
1 AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACT-GCAGCCTCTAACACAGTTA
45852560 GCGAG
65 GCGAG
* * * * *
45852565 AGCAAACCTCCTAGCTATCATACTAAGGCTTGCAGGATAAAAACCGCAGCCTTTAACACAGTTAG
1 AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTAACACAGTTAG
*
45852630 TGAG
66 CGAG
* * * * * * * * * *
45852634 GGTAAAGCTCCTAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTAACACAATTTA
1 AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTAACAC-AGTTA
*
45852699 -CGTG
65 GCGAG
* * * * *
45852703 AGCAAAGCTCCCAGTTGTCATACTAAGGCTTGTAGGATAAAAACCGTAGCCTCTAACATAGTTAG
1 AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTAACACAGTTAG
45852768 CGAG
66 CGAG
* * * * *
45852772 AGCAAAGCTCCCAACTGTCATAGTAAGGCTTGAAGGATAAAAAGT-CTAGCCTCCAACACAGTTA
1 AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGC-AGCCTCTAACACAGTTA
*
45852836 GTGAG
65 GCGAG
* * * * * *
45852841 AGCAAAGGTCCCACCTGTCATACTAAGGCTTGTAGGATAAAGACTGCAGCCTCCAACATAGTTAG
1 AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTAACACAGTTAG
45852906 CGAG
66 CGAG
45852910 AG
1 AG
45852912 TTAAAAACTT
Statistics
Matches: 343, Mismatches: 64, Indels: 16
0.81 0.15 0.04
Matches are distributed among these distances:
66 2 0.01
67 12 0.03
68 6 0.02
69 318 0.93
70 5 0.01
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (69 bp):
AGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTAACACAGTTAG
CGAG
Found at i:45852811 original size:207 final size:207
Alignment explanation
Indices: 45852422--45852870 Score: 521
Period size: 207 Copynumber: 2.2 Consensus size: 207
45852412 ATAAAAAAGC
* * * * * * * *
45852422 TAGTGATAGCAAAGCTCCCAA--GTTATATTAAGGCTCGCAGGATAAAAACTGCAGCCTGTAACA
1 TAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTAACA
* * *
45852485 CAATTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAATCGCAGTCTCC
66 CAATTAGCAACAGCAAAGCTCCCAGCTATCATACAAAGGCTCGCAGGATAAAAACCGCAGCCTCC
* * *
45852550 AACATAGTTAGCGAGAGCAAACCTCCTAGCTATCATACTAAGGCTTGCAGGATAAAAACCG-C-A
131 AACATAGTTAGCGAGAGCAAACCTCCCAACTATCATACTAAGGCTTGAAGGATAAAAA--GTCTA
**
45852613 GCCTTTAACACAGT
194 GCCTCCAACACAGT
* * *
45852627 TAGTGAGGGTAAAGCTCCTAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTAACA
1 TAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTAACA
*** * * * * * *
45852692 CAATTTA-CGTGAGCAAAGCTCCCAGTTGTCATACTAAGGCTTGTAGGATAAAAACCGTAGCCTC
66 CAA-TTAGCAACAGCAAAGCTCCCAGCTATCATACAAAGGCTCGCAGGATAAAAACCGCAGCCTC
* * * *
45852756 TAACATAGTTAGCGAGAGCAAAGCTCCCAACTGTCATAGTAAGGCTTGAAGGATAAAAAGTCTAG
130 CAACATAGTTAGCGAGAGCAAACCTCCCAACTATCATACTAAGGCTTGAAGGATAAAAAGTCTAG
45852821 CCTCCAACACAGT
195 CCTCCAACACAGT
* * *
45852834 TAGTGAGAGCAAAGGTCCCACCTGTCATACTAAGGCT
1 TAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCT
45852871 TGTAGGATAA
Statistics
Matches: 201, Mismatches: 38, Indels: 8
0.81 0.15 0.03
Matches are distributed among these distances:
205 18 0.09
206 1 0.00
207 179 0.89
208 3 0.01
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (207 bp):
TAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTAACA
CAATTAGCAACAGCAAAGCTCCCAGCTATCATACAAAGGCTCGCAGGATAAAAACCGCAGCCTCC
AACATAGTTAGCGAGAGCAAACCTCCCAACTATCATACTAAGGCTTGAAGGATAAAAAGTCTAGC
CTCCAACACAGT
Found at i:45859667 original size:30 final size:30
Alignment explanation
Indices: 45859631--45859790 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
45859621 GACAAGATTG
* * * * *
45859631 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
45859661 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
45859689 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45859718 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45859748 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45859777 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45859791 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:45859758 original size:59 final size:57
Alignment explanation
Indices: 45859631--45859790 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
45859621 GACAAGATTG
* * * * * *
45859631 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
45859689 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
45859748 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
45859791 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:45867584 original size:30 final size:30
Alignment explanation
Indices: 45867548--45867707 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
45867538 GACAAGATTG
* * * * *
45867548 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
*
45867578 GCACTAAGTGTGCGAGTTTG---ATTATATA
1 GCACTAAGTGTGCGAG-CTGAAAATTATATA
45867606 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45867635 GCACTAAGTGTGCGAGCTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45867665 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGCTGAAAATTATATA
45867694 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
45867708 GATTCACTAT
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 49 0.41
30 45 0.38
31 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGCTGAAAATTATATA
Found at i:45867675 original size:59 final size:57
Alignment explanation
Indices: 45867548--45867707 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
45867538 GACAAGATTG
* * * * * *
45867548 GCACTAAGTGTGCGGGTTTAAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATAGCACTAAGTGTGCGAGTCTGATTATATA
45867606 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAG-CTGAAAATTATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTG---ATTATATA
45867665 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
1 GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCG
45867708 GATTCACTAT
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 20 0.22
59 51 0.55
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGCTGAAAATATATAGCACTAAGTGTGCGAGTCTGATTATATA
Found at i:45869875 original size:29 final size:29
Alignment explanation
Indices: 45869830--45869907 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
45869820 GGCTTGGAGT
*
45869830 TGATTCGGGCC-AGATGGGCCATATGAATG
1 TGATTTGGGCCTA-ATGGGCCATATGAATG
45869859 TGATTTGGGCCTAATGGGCCATATGAATG
1 TGATTTGGGCCTAATGGGCCATATGAATG
* *
45869888 AGA-TTGGGCCTAGTGGGCCA
1 TGATTTGGGCCTAATGGGCCA
45869908 CAAGCATGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
28 16 0.36
29 28 0.62
30 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.26
Consensus pattern (29 bp):
TGATTTGGGCCTAATGGGCCATATGAATG
Found at i:45873073 original size:31 final size:31
Alignment explanation
Indices: 45873034--45873118 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
45873024 TGGGTGTGTG
* *
45873034 GGCCACACGGGCGTGTGGACCCACATGGGCA
1 GGCCACACGGGCGTGTGGGCCCACACGGGCA
* * * *
45873065 GGCTACACGAGCGTATGGGCCAACACGGGCA
1 GGCCACACGGGCGTGTGGGCCCACACGGGCA
*
45873096 GGCCACACGGGCATGTGGGCCCA
1 GGCCACACGGGCGTGTGGGCCCA
45873119 TTATACTAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.38, T:0.09
Consensus pattern (31 bp):
GGCCACACGGGCGTGTGGGCCCACACGGGCA
Found at i:45875739 original size:27 final size:26
Alignment explanation
Indices: 45875696--45875807 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 26
45875686 AGGAAGCGTC
* *
45875696 CTGGTGGCTATGTCACAATTATCTGATT
1 CTGGTGGCTCTGCCAC-ATTATCTG-TT
45875724 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
* *
45875750 CTGGTGGCTCTGCCACGATTATTTATAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* * *
45875778 CTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
45875804 CTGG
1 CTGG
45875808 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
26 9 0.13
27 46 0.65
28 16 0.23
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:45888638 original size:27 final size:26
Alignment explanation
Indices: 45888598--45888708 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
45888588 AGGAAGCGTC
*
45888598 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
45888625 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
45888652 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
45888680 CTGGTGACTC-GTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
45888705 CTGG
1 CTGG
45888709 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 4, Indels: 12
0.82 0.04 0.13
Matches are distributed among these distances:
25 5 0.07
26 11 0.15
27 46 0.61
28 12 0.16
29 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:45888696 original size:54 final size:53
Alignment explanation
Indices: 45888598--45888708 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
45888588 AGGAAGCGTC
*
45888598 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTATT
* * * *
45888652 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTC-GTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATTATCTATT
45888705 CTGG
1 CTGG
45888709 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 11 0.22
54 29 0.57
55 11 0.22
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTATT
Found at i:45893208 original size:14 final size:14
Alignment explanation
Indices: 45893189--45893216 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45893179 GAGCTTATGT
45893189 TTTAAGTATATGGC
1 TTTAAGTATATGGC
45893203 TTTAAGTATATGGC
1 TTTAAGTATATGGC
45893217 ATGTATAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
TTTAAGTATATGGC
Found at i:45897494 original size:17 final size:18
Alignment explanation
Indices: 45897472--45897507 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
45897462 CACATTGAAG
45897472 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
45897489 TGTTTTCATTGAAAACCT
1 TGTTTTCAGTGAAAACCT
45897507 T
1 T
45897508 CATTAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:45898757 original size:28 final size:28
Alignment explanation
Indices: 45898721--45898800 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
45898711 CATACATGCT
* * *
45898721 TATGACCCACTAGGCCCAATCTCAT-TCG
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
45898749 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
45898778 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
45898801 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 21 0.47
29 23 0.51
30 1 0.02
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:45899835 original size:4 final size:4
Alignment explanation
Indices: 45899828--45899854 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
45899818 TATATACTAA
45899828 AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA
45899855 AATATAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:45904336 original size:9 final size:9
Alignment explanation
Indices: 45904321--45904353 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
45904311 TTGGGCTACA
45904321 ATGGGCCG-
1 ATGGGCCGT
45904329 AGTGGGCCGT
1 A-TGGGCCGT
45904339 ATGGGCCGT
1 ATGGGCCGT
45904348 ATGGGC
1 ATGGGC
45904354 TCGTGGGCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.12, C:0.21, G:0.48, T:0.18
Consensus pattern (9 bp):
ATGGGCCGT
Found at i:45907885 original size:50 final size:50
Alignment explanation
Indices: 45907857--45907992 Score: 245
Period size: 50 Copynumber: 2.7 Consensus size: 50
45907847 CTTCAGCTGT
45907857 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
1 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
* *
45907907 GAGTTATTCCTTTATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
1 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
*
45907957 GAGTTATGCCTTGATTTGGCTTCGGGCCATGGTATA
1 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATA
45907993 TGTACTTATC
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 81 1.00
ACGTcount: A:0.19, C:0.13, G:0.32, T:0.36
Consensus pattern (50 bp):
GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
Found at i:45911909 original size:40 final size:40
Alignment explanation
Indices: 45911813--45911996 Score: 241
Period size: 40 Copynumber: 4.7 Consensus size: 40
45911803 CGAATGGTAT
* * * * * *
45911813 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAAT
1 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
* *
45911854 CCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
45911894 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
45911934 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-C-AAA
1 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
45911972 -TGGG-TAAGTCCCGAAGGCAATTGTG
1 CCGGGTTAAGTCCCGAAGGCATTTGTG
45911997 AATTACTATA
Statistics
Matches: 131, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
36 20 0.15
37 3 0.02
38 3 0.02
39 1 0.01
40 80 0.61
41 24 0.18
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:45919917 original size:41 final size:40
Alignment explanation
Indices: 45919860--45920040 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
45919850 TTCGAATGGT
* * * * *
45919860 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAA
* *
45919901 ATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
*
45919941 AACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
* * *
45919981 ATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTATA
1 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCA-A
* *
45920022 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGTTAAGTCCCGAAG
45920041 ACAATCGAGC
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 95 0.77
41 28 0.23
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACCAA
Found at i:45920009 original size:80 final size:81
Alignment explanation
Indices: 45919862--45920040 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 81
45919852 CGAATGGTAT
* * * *
45919862 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCGAAGGCAATT
*
45919927 GTGCGAGTTACCAAAA
66 GTGCGAATTACCAAAA
* * * *
45919943 CCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAATCCGGGTTAAGTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCGAAGGCAATT
* *
45920007 GTGCGAATTACTATAA
66 GTGCGAATTACCAAAA
*
45920023 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
45920041 ACAATCGAGC
Statistics
Matches: 85, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
80 59 0.69
81 26 0.31
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGGTCAAGTCCCGAAGGCAATT
GTGCGAATTACCAAAA
Found at i:45920065 original size:80 final size:80
Alignment explanation
Indices: 45919899--45920080 Score: 195
Period size: 80 Copynumber: 2.3 Consensus size: 80
45919889 CTAAGTGACT
* * * * * *
45919899 AAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGCA
1 AAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACA
* * * *
45919964 TTTGTGCGAGTTACC
66 ATCGAGCGAGTCACC
* * * *
45919979 AAATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGACA
1 AAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACA
* *
45920044 ATCGAGCGAGTCGCT
66 ATCGAGCGAGTCACC
* *
45920059 ATATCC-GGTTAAATTCCGAAGG
1 AAATCCGGGTTAAATCCCGAAGG
45920081 TACGTGATTC
Statistics
Matches: 84, Mismatches: 18, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
79 14 0.17
80 70 0.83
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (80 bp):
AAATCCGGGTTAAATCCCGAAGGCAATTGTGCGAATTACCAAAACCGGGCTAAGTCCCGAAGACA
ATCGAGCGAGTCACC
Found at i:45930102 original size:40 final size:41
Alignment explanation
Indices: 45930008--45930228 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 41
45929998 TATTCGAATG
* *
45930008 ATATCCGGGCTAAG-TCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTA-GTGACT
* * * *
45930049 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
45930089 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
45930129 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
45930169 ATATCCGGGCTAAGAT-CCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
45930208 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
45930229 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
37 2 0.01
38 13 0.08
39 15 0.10
40 93 0.61
41 29 0.19
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:45933508 original size:46 final size:46
Alignment explanation
Indices: 45933441--45933569 Score: 231
Period size: 46 Copynumber: 2.8 Consensus size: 46
45933431 TGTAACCCGC
* * *
45933441 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
45933487 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
45933533 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45933570 TGCTCAACCA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 80 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:45933588 original size:46 final size:45
Alignment explanation
Indices: 45933446--45933588 Score: 146
Period size: 46 Copynumber: 3.1 Consensus size: 45
45933436 CCCGCCCATA
* ** * *
45933446 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
*** *
45933491 AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
45933537 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
45933584 AGTGA
1 AGTGA
45933589 CATGTCACTT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
46 82 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:45937799 original size:48 final size:48
Alignment explanation
Indices: 45937709--45937965 Score: 179
Period size: 43 Copynumber: 5.6 Consensus size: 48
45937699 TACCCAAAAA
* * * *
45937709 CTCGCACACTTAGTGCC-A-A-ATA-A-ATAGCTGAAGCTTTATCAAT
1 CTCGCACACTAAGTGCCAATATATATATATAGCCGAAGCTATCTCAAT
* * *
45937752 CTCTCAC-CATAAGTGCCAATATGTATATATAGCCGGAGCTATCTCAAT
1 CTCGCACAC-TAAGTGCCAATATATATATATAGCCGAAGCTATCTCAAT
* * *
45937800 CACGCACACTAAGTGCCAATATATGTATATAGCCGAAGTTATCT-AAT
1 CTCGCACACTAAGTGCCAATATATATATATAGCCGAAGCTATCTCAAT
* * ***
45937847 CTCGCACACTTAGTGCC-A-ATGTAT-T-TAGTCC-AAGCTAT-TTGGT
1 CTCGCACACTAAGTGCCAATATATATATATAG-CCGAAGCTATCTCAAT
* * * *
45937890 CTCGTACACTTAGTGCC-A-ATATAT-T-TAGCTGAAGCTATCTCAGT
1 CTCGCACACTAAGTGCCAATATATATATATAGCCGAAGCTATCTCAAT
* *
45937934 CTCGCACACTTAGTGCCAATGTATAATATATA
1 CTCGCACACTAAGTGCCAATATAT-ATATATA
45937966 TAATTGAAGC
Statistics
Matches: 171, Mismatches: 27, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
42 3 0.02
43 56 0.33
44 23 0.13
45 6 0.04
46 6 0.04
47 21 0.12
48 53 0.31
49 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
CTCGCACACTAAGTGCCAATATATATATATAGCCGAAGCTATCTCAAT
Found at i:45942834 original size:18 final size:17
Alignment explanation
Indices: 45942807--45942849 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
45942797 CGTACATGAG
*
45942807 AGAAACAAAAACAAAAAA
1 AGAAA-AAAAAAAAAAAA
*
45942825 AGAAAAAAAAAAAGAAA
1 AGAAAAAAAAAAAAAAA
*
45942842 GGAAAAAA
1 AGAAAAAA
45942850 GTGTTCATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 17 0.77
18 5 0.23
ACGTcount: A:0.84, C:0.05, G:0.12, T:0.00
Consensus pattern (17 bp):
AGAAAAAAAAAAAAAAA
Found at i:45944136 original size:40 final size:40
Alignment explanation
Indices: 45944077--45944223 Score: 132
Period size: 40 Copynumber: 3.7 Consensus size: 40
45944067 CAATTGAATG
* * * *
45944077 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
45944117 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* ** * ****
45944157 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
45944197 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
45944224 CGTGCACGTG
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:45944224 original size:40 final size:39
Alignment explanation
Indices: 45944118--45944244 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
45944108 CTGGAAATTA
* * *
45944118 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
45944156 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* *
45944198 TATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
45944238 TATCCGG
1 TATCCGG
45944245 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 71 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:45952170 original size:40 final size:40
Alignment explanation
Indices: 45952111--45952257 Score: 132
Period size: 40 Copynumber: 3.7 Consensus size: 40
45952101 CAATTGAATG
* * * *
45952111 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* * * **
45952151 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
* ** * ****
45952191 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
*
45952231 CTATCCGGGCTAAGACCCGAAGGCATT
1 ATATCCGGGCTAAGACCCGAAGGCATT
45952258 CGTGCACGTG
Statistics
Matches: 88, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGAAACT
Found at i:45952258 original size:40 final size:39
Alignment explanation
Indices: 45952152--45952278 Score: 150
Period size: 40 Copynumber: 3.2 Consensus size: 39
45952142 CTGGAAATTA
* * *
45952152 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTG-AC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTGTTC
45952190 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTTC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
* *
45952232 TATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTTC
45952272 TATCCGG
1 TATCCGG
45952279 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
38 1 0.01
39 3 0.04
40 71 0.91
41 1 0.01
42 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTTC
Found at i:45968255 original size:105 final size:105
Alignment explanation
Indices: 45968073--45968281 Score: 391
Period size: 105 Copynumber: 2.0 Consensus size: 105
45968063 ATATAAGGGC
45968073 ACACGGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
1 ACACGGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
* *
45968138 TGTCATAGCCCGTGTGGCCAATTCGAAACTGAAGTACATA
66 TGTCATAGCCCGTGTGGCCAATTCGAAAATAAAGTACATA
*
45968178 ACACGGCCAAGGCAAATGCCTGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
1 ACACGGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
45968243 TGTCATAGCCCGTGTGGCCAATTCGAAAATAAAGTACAT
66 TGTCATAGCCCGTGTGGCCAATTCGAAAATAAAGTACAT
45968282 GATGCAGGGG
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
105 101 1.00
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (105 bp):
ACACGGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
TGTCATAGCCCGTGTGGCCAATTCGAAAATAAAGTACATA
Found at i:45969869 original size:28 final size:28
Alignment explanation
Indices: 45969835--45969896 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
45969825 CCTCGCACGG
* * ** *
45969835 TAAGTGCTATTCTAGATGTTTTGCACAT
1 TAAGTGCCATCCTAGATACTTTGCACAC
*
45969863 TAAGTGCCATCCTCGATACTTTGCACAC
1 TAAGTGCCATCCTAGATACTTTGCACAC
45969891 TAAGTG
1 TAAGTG
45969897 TCATTTATAT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (28 bp):
TAAGTGCCATCCTAGATACTTTGCACAC
Found at i:45969975 original size:40 final size:39
Alignment explanation
Indices: 45969910--45969995 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
45969900 TTTATATATA
**
45969910 TAGCCGAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCA-TTT
* * * *
45969950 TAGCCGAAGCTATTTCGAACCGCACACTAAGTGTCATTT
1 TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
45969989 TAGCCGA
1 TAGCCGA
45969996 TAAGTCGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACCGCACACCAAGTGCCATTT
Found at i:45973808 original size:43 final size:43
Alignment explanation
Indices: 45973760--45973855 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
45973750 TCCTAGATAT
** * *
45973760 GGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCACACAG
1 GGTCTTACATGAAATCACAATA-CAATGCCAATGTCCCACACAG
* * * *
45973803 GGTCTTACACGAAATCACAATACAATGCCAATGTCCTAGACAT
1 GGTCTTACATGAAATCACAATACAATGCCAATGTCCCACACAG
45973846 GGTCTTACAT
1 GGTCTTACAT
45973856 TGACTCTCTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
43 40 0.93
44 3 0.07
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAATCACAATACAATGCCAATGTCCCACACAG
Found at i:45973903 original size:50 final size:49
Alignment explanation
Indices: 45973827--45974001 Score: 171
Period size: 50 Copynumber: 3.6 Consensus size: 49
45973817 TCACAATACA
* *
45973827 ATGCCAATGTCCTAGACATGGTCTTACATTGACTCTCTTATATCGAGGTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACTGACTCTC-TATATCGAGGTCG
* * * * * * *
45973878 ATGCCATATCCTAGACATGGTCTTACACTGGCTCTCCTCTTTCCG-TGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CTATAT-CGAGGTCG
* * *
45973928 ATGCCATGTCCCAGACATGGTCTTACACTGA--CAC-ATATCAAGCT-G
1 ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTATATCGAGGTCG
45973973 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
45974002 AGCTTACATG
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 31 0.30
46 2 0.02
47 1 0.01
48 1 0.01
50 61 0.59
51 8 0.08
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACTCTCTATATCGAGGTCG
Found at i:45975677 original size:24 final size:25
Alignment explanation
Indices: 45975617--45975770 Score: 190
Period size: 25 Copynumber: 6.2 Consensus size: 25
45975607 AGCATAGCTG
*
45975617 CTTTATCATATAACTGGAGGCCT-AGCC
1 CTTTAT-A-ATAACTGG-GGCATAAGCC
45975644 TCTTT-TAATAACTGGGGCATAAGCC
1 -CTTTATAATAACTGGGGCATAAGCC
*
45975669 CTTT-TAATAACTGAGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
*
45975693 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
*
45975718 CTTTATCATAACTGGGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
* *
45975743 ATTTATCATAACT-GGGCATAAGCC
1 CTTTATAATAACTGGGGCATAAGCC
45975767 CTTT
1 CTTT
45975771 TACACTTCCT
Statistics
Matches: 118, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
24 45 0.38
25 67 0.57
26 1 0.01
27 1 0.01
28 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (25 bp):
CTTTATAATAACTGGGGCATAAGCC
Found at i:45975679 original size:49 final size:50
Alignment explanation
Indices: 45975626--45975772 Score: 189
Period size: 49 Copynumber: 3.0 Consensus size: 50
45975616 GCTTTATCAT
* *
45975626 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGAGGCATAAGCCTCTTTTCATAACTGGGGCATAAGCCCTTTTA
*
45975675 ATAACT-GAGGCATAAGCC-CTTTATCATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGAGGCATAAGCCTCTTT-TCATAACTGGGGCATAAGCCCTTT-TA
*
45975725 ATAACTGG-GGCATAAGCCAT-TTATCATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGAGGCATAAGCC-TCTTTTCATAACTGGGGCATAAGCCCTTTTA
45975773 CACTTCCTCC
Statistics
Matches: 87, Mismatches: 5, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
48 11 0.13
49 48 0.55
50 25 0.29
51 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.29
Consensus pattern (50 bp):
ATAACTGGAGGCATAAGCCTCTTTTCATAACTGGGGCATAAGCCCTTTTA
Found at i:45975846 original size:20 final size:20
Alignment explanation
Indices: 45975821--45975887 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
45975811 TTATGAATAC
45975821 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
45975841 ATCATGTGCATAGT-ATACAT
1 ATCATGTGCATA-TCATACAT
*
45975861 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
45975881 ACCATGT
1 ATCATGT
45975888 TTACTAAAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 1 0.02
20 40 0.95
21 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:45979517 original size:29 final size:29
Alignment explanation
Indices: 45979484--45979557 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
45979474 GTGACGAGAT
45979484 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
45979513 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
45979542 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
45979558 AGCTCGAAGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:45982041 original size:68 final size:70
Alignment explanation
Indices: 45981969--45982166 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
45981959 ACACCCTGTA
* * * *
45981969 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
45982031 ATAAAT
65 ATAAAT
*
45982037 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
45982102 ATAAAT
65 ATAAAT
*
45982108 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
45982167 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:45982080 original size:41 final size:41
Alignment explanation
Indices: 45982035--45982152 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
45982025 TGAAAGATAA
45982035 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
45982076 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45982106 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45982147 ATGTAG
1 ATGTAG
45982153 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:45982092 original size:71 final size:71
Alignment explanation
Indices: 45982003--45982166 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
45981993 GAGATGTATC
45982003 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45982068 AGGACA
66 AGGACA
45982074 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45982139 AGGACA
66 AGGACA
45982145 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
45982167 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:45989586 original size:68 final size:70
Alignment explanation
Indices: 45989514--45989710 Score: 285
Period size: 71 Copynumber: 2.8 Consensus size: 70
45989504 ACACCCTGTA
* * * *
45989514 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
45989576 ATAAAT
65 ATAAAT
*
45989582 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
45989647 ATAAAT
65 ATAAAT
*
45989653 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGA-AAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
45989711 AGACAAATCG
Statistics
Matches: 120, Mismatches: 5, Indels: 6
0.92 0.04 0.05
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 13 0.11
71 80 0.67
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:45989625 original size:41 final size:41
Alignment explanation
Indices: 45989580--45989697 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
45989570 TGAAAGATAA
45989580 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
45989621 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45989651 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
45989692 ATGTAG
1 ATGTAG
45989698 AAAGAGAGCT
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:45989637 original size:71 final size:71
Alignment explanation
Indices: 45989548--45989710 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
45989538 GAGATGTATC
45989548 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45989613 AGGACA
66 AGGACA
45989619 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
45989684 AGGACA
66 AGGACA
45989690 CCATGTAGA-AAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
45989711 AGACAAATCG
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 12 0.13
71 80 0.87
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:45989747 original size:65 final size:68
Alignment explanation
Indices: 45989548--45989733 Score: 263
Period size: 71 Copynumber: 2.7 Consensus size: 68
45989538 GAGATGTATC
*
45989548 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACG-G-AAGACAAATG-AGCTAGGTCGCATGCGTGATTCCAAGTGA
45989613 AGGACA
63 AGGACA
*
45989619 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACG-G-AAGACAAATG-AGCTAGGTCGCATGCGTGATTCCAAGTGA
45989684 AGGACA
63 AGGACA
45989690 CCATGTAGA-AAGAGAGCTAC-G-AGACAAATCG-GCTAGGTCGCATG
1 CCATGTAGACAAGAGAGCTACGGAAGACAAAT-GAGCTAGGTCGCATG
45989734 AGTGGTACTA
Statistics
Matches: 113, Mismatches: 1, Indels: 8
0.93 0.01 0.07
Matches are distributed among these distances:
65 13 0.12
66 7 0.06
67 1 0.01
68 1 0.01
70 11 0.10
71 80 0.71
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACGGAAGACAAATGAGCTAGGTCGCATGCGTGATTCCAAGTGAAGG
ACA
Found at i:45994830 original size:40 final size:40
Alignment explanation
Indices: 45994756--45994980 Score: 321
Period size: 40 Copynumber: 5.6 Consensus size: 40
45994746 AACCCAAGTA
* *
45994756 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
45994795 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
45994835 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45994875 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
* *
45994918 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45994958 CCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
45994981 CATCCGAATA
Statistics
Matches: 170, Mismatches: 9, Indels: 13
0.89 0.05 0.07
Matches are distributed among these distances:
39 13 0.08
40 120 0.71
41 1 0.01
43 36 0.21
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:45994940 original size:83 final size:80
Alignment explanation
Indices: 45994756--45994980 Score: 321
Period size: 83 Copynumber: 2.8 Consensus size: 80
45994746 AACCCAAGTA
* * *
45994756 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATA
45994819 GTCACTAGCACAAATG
65 GTCACTAGCACAAATG
*
45994835 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
45994900 -CAACTACTCGCACAAATG
66 TC-ACTA---GCACAAATG
* * *
45994918 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCAGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
45994981 CATCCGAATA
Statistics
Matches: 132, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
79 14 0.11
80 49 0.37
81 1 0.01
83 68 0.52
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:45994956 original size:123 final size:119
Alignment explanation
Indices: 45994756--45994980 Score: 360
Period size: 123 Copynumber: 1.9 Consensus size: 119
45994746 AACCCAAGTA
* *
45994756 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
45994821 CACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
66 AACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
45994875 CCTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
1 CCTTCGGGACTTAG-CCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA
*
45994940 TAGTAACTTGCACAAATGCCTTCAGGACTTAGCCCGGATAT
62 TAGTAACTAGCACAAATGCCTTCAGGACTTAGCCCGGATAT
45994981 CATCCGAATA
Statistics
Matches: 96, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
119 13 0.14
120 10 0.10
121 1 0.01
123 72 0.75
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (119 bp):
CCTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:45999609 original size:46 final size:45
Alignment explanation
Indices: 45999542--45999711 Score: 198
Period size: 46 Copynumber: 3.7 Consensus size: 45
45999532 TGTAACCCAC
*
45999542 CCATAAGTGAACTCGGACTCAACCCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
* *
45999588 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGT-T
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTAT
* *** * * *
45999634 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTAT
45999681 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
45999712 TTTGGATGCT
Statistics
Matches: 103, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
45 1 0.01
46 65 0.63
47 35 0.34
48 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTAT
Found at i:45999709 original size:93 final size:93
Alignment explanation
Indices: 45999550--45999720 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
45999540 ACCCATAAGT
* * *
45999550 GAACTCGGACTCAACCCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45999615 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
45999643 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACCCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
45999708 CGAGTTTGGATGC
66 CGAGCTCGGATGC
45999721 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACCCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:45999736 original size:46 final size:45
Alignment explanation
Indices: 45999593--45999736 Score: 120
Period size: 46 Copynumber: 3.1 Consensus size: 45
45999583 CGTATCCATA
*
45999593 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
45999642 --CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
*
45999685 AAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
45999732 AGTGA
1 AGTGA
45999737 CATGTCACTT
Statistics
Matches: 79, Mismatches: 6, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 6 0.08
44 1 0.01
46 33 0.42
47 29 0.37
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:46010382 original size:43 final size:43
Alignment explanation
Indices: 46010210--46010380 Score: 136
Period size: 43 Copynumber: 4.0 Consensus size: 43
46010200 CATAATATTT
* *
46010210 TCGATATGTGTTCTA-GTGTAAGACCACGTCTTGGACGTTGGCA
1 TCGATATGTGAT-TACGTGTAAGACCACGTCTGGGACGTTGGCA
* * ** * * * **
46010253 TCGATATGTGATTATGTATAAGATGATGTTTGGGACATCAGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * *
46010296 TCG-TATTTGATT-CGTGTAAGACC-CTGTCTAGGATAG-TGGCA
1 TCGATATGTGATTACGTGTAAGACCAC-GTCTGGGA-CGTTGGCA
* *
46010337 TTGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
46010380 T
1 T
46010381 TGTACGATAT
Statistics
Matches: 94, Mismatches: 27, Indels: 14
0.70 0.20 0.10
Matches are distributed among these distances:
41 18 0.19
42 19 0.20
43 56 0.60
44 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:46010584 original size:18 final size:19
Alignment explanation
Indices: 46010550--46010593 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
46010540 GTTACTAATT
46010550 ATATATGATGTAAATGAAA
1 ATATATGATGTAAATGAAA
*
46010569 ATATAT-ATGTATATGAAA
1 ATATATGATGTAAATGAAA
46010587 AGTATAT
1 A-TATAT
46010594 TCGGCTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 12 0.52
19 11 0.48
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (19 bp):
ATATATGATGTAAATGAAA
Found at i:46038016 original size:17 final size:17
Alignment explanation
Indices: 46037994--46038028 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
46037984 CTCAGGCTGA
* *
46037994 ATCAGAACTGATGCTTC
1 ATCAGAACCGACGCTTC
46038011 ATCAGAACCGACGCTTC
1 ATCAGAACCGACGCTTC
46038028 A
1 A
46038029 GTTAACAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (17 bp):
ATCAGAACCGACGCTTC
Found at i:46041634 original size:42 final size:43
Alignment explanation
Indices: 46041525--46041635 Score: 107
Period size: 48 Copynumber: 2.5 Consensus size: 43
46041515 CGAAAACTCG
* * *
46041525 CACACTTAGTGCCAAATAAATAGCCGAAGCTATATCAATCTCA
1 CACACTAAGTGCCAAATATATAGCCGAAGCTATATCAATCACA
* * * *
46041568 CATACTAAGTGCCAATATGTATATATAGCCGGAGCTATCTCAATCACT
1 CACACTAAGTGCC-A-A---ATATATAGCCGAAGCTATATCAATCACA
46041616 CACACTAAGTGCC-AATATAT
1 CACACTAAGTGCCAAATATAT
46041636 GTACATAGCC
Statistics
Matches: 55, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
42 6 0.11
43 11 0.20
44 1 0.02
45 2 0.04
48 35 0.64
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (43 bp):
CACACTAAGTGCCAAATATATAGCCGAAGCTATATCAATCACA
Found at i:46041644 original size:48 final size:48
Alignment explanation
Indices: 46041544--46041655 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 48
46041534 TGCCAAATAA
* * * * *
46041544 ATAGCCGAAGCTATATCAATCTCACATACTAAGTGCCAATATGTATAT
1 ATAGCCGAAGCTATCTCAATCACACACACTAAGTGCCAATATATATAC
* * *
46041592 ATAGCCGGAGCTATCTCAATCACTCACACTAAGTGCCAATATATGTAC
1 ATAGCCGAAGCTATCTCAATCACACACACTAAGTGCCAATATATATAC
*
46041640 ATAGCCGAAGTTATCT
1 ATAGCCGAAGCTATCT
46041656 GATCTTGCAC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 54 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (48 bp):
ATAGCCGAAGCTATCTCAATCACACACACTAAGTGCCAATATATATAC
Found at i:46041698 original size:43 final size:43
Alignment explanation
Indices: 46041641--46041768 Score: 184
Period size: 43 Copynumber: 3.0 Consensus size: 43
46041631 TATATGTACA
*
46041641 TAGCCGAAGTTATCTGATCTTGCACACTTAGTGCCAATGTATT
1 TAGCCGAAGCTATCTGATCTTGCACACTTAGTGCCAATGTATT
* * * *
46041684 TAGCCGAAGCTATCTGGTCTCGCGCACTTAGTGCCAATATATT
1 TAGCCGAAGCTATCTGATCTTGCACACTTAGTGCCAATGTATT
* *
46041727 TAGCCGAAGCTATCTCAGTCTTGCACACCTAGTGCCAATGTA
1 TAGCCGAAGCTATCTGA-TCTTGCACACTTAGTGCCAATGTA
46041769 CAATATATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
43 53 0.73
44 20 0.27
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (43 bp):
TAGCCGAAGCTATCTGATCTTGCACACTTAGTGCCAATGTATT
Found at i:46047691 original size:41 final size:40
Alignment explanation
Indices: 46047562--46047698 Score: 141
Period size: 41 Copynumber: 3.3 Consensus size: 40
46047552 ATATCGTACA
* * *
46047562 ATGCCAATGTCCTAGACGTGGTCTTACATGCAATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAT--CATATCG
* * * *
46047605 ATGCCACTGTCCCAGACAAGGTCTTACACGAATCA-AACAAA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAATCATATC--G
46047646 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AATCATATCG
*
46047687 ATGCCAAAGTCC
1 ATGCCAATGTCC
46047699 TAGATGTGGC
Statistics
Matches: 78, Mismatches: 12, Indels: 10
0.78 0.12 0.10
Matches are distributed among these distances:
39 2 0.03
40 2 0.03
41 39 0.50
42 8 0.10
43 27 0.35
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (40 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAATCATATCG
Found at i:46048967 original size:24 final size:24
Alignment explanation
Indices: 46048935--46049057 Score: 212
Period size: 24 Copynumber: 5.2 Consensus size: 24
46048925 GCCTAGCCTT
*
46048935 TTTTAATAACTGGGGCAAAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
46048959 TTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
46048983 -TTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
46049006 TTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
*
46049030 TTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCC
46049054 TTTT
1 TTTT
46049058 TCACTTCCTC
Statistics
Matches: 96, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
23 23 0.24
24 73 0.76
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (24 bp):
TTTTAATAACTGGGGCATAAGCCC
Found at i:46049004 original size:47 final size:48
Alignment explanation
Indices: 46048935--46049057 Score: 212
Period size: 47 Copynumber: 2.6 Consensus size: 48
46048925 GCCTAGCCTT
*
46048935 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
46048983 -TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
*
46049030 TTTTGATAACTGGGGCATAAGCCCTTTT
1 TTTTAATAACTGGGGCATAAGCCCTTTT
46049058 TCACTTCCTC
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
47 45 0.63
48 26 0.37
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (48 bp):
TTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:46049132 original size:20 final size:20
Alignment explanation
Indices: 46049107--46049145 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
46049097 TATGATTACA
46049107 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
46049127 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
46049146 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:46049151 original size:20 final size:20
Alignment explanation
Indices: 46049108--46049152 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
46049098 ATGATTACAT
**
46049108 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
46049128 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
46049148 CATGT
1 CATGT
46049153 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:46049221 original size:25 final size:25
Alignment explanation
Indices: 46049189--46049236 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46049179 ATACATAAAC
* * *
46049189 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
46049214 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
46049237 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:46054649 original size:71 final size:71
Alignment explanation
Indices: 46054565--46054728 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46054555 CGATTTGTCT
46054565 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46054630 CTTTCA
66 CTTTCA
46054636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46054701 CTTTCA
66 CTTTCA
46054707 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46054729 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46054766 original size:71 final size:70
Alignment explanation
Indices: 46054565--46054762 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
46054555 CGATTTGTCT
* * * *
46054565 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46054630 CTTTCA
65 CTTTCA
* * * *
46054636 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
46054701 CTTTCA
65 CTTTCA
* *
46054707 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
46054763 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46059631 original size:24 final size:24
Alignment explanation
Indices: 46059595--46059723 Score: 188
Period size: 24 Copynumber: 5.4 Consensus size: 24
46059585 CTGGAGGCCT
*
46059595 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
46059620 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
46059644 AGCCC-TTTCATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
46059667 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
46059691 AGCCCTTTTGATAACTAGGACATA
1 AGCCCTTTTAATAACTGGGGCATA
46059715 AGCCCTTTT
1 AGCCCTTTT
46059724 TCACTTCCTC
Statistics
Matches: 98, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
23 22 0.22
24 72 0.73
25 4 0.04
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:46059675 original size:47 final size:48
Alignment explanation
Indices: 46059595--46059723 Score: 188
Period size: 47 Copynumber: 2.7 Consensus size: 48
46059585 CTGGAGGCCT
* *
46059595 AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATA
1 AGCC-CTTTTCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
*
46059644 AGCCC-TTTCATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* * *
46059691 AGCCCTTTTGATAACTAGGACATAAGCCCTTTT
1 AGCCCTTTTCATAACTGGGGCATAAGCCCTTTT
46059724 TCACTTCCTC
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
47 44 0.60
48 25 0.34
49 4 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTCATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:46059797 original size:20 final size:20
Alignment explanation
Indices: 46059772--46059838 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
46059762 TTATGATTAC
46059772 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
46059792 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
46059812 GTCATGCGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
46059832 ACCATGT
1 ATCATGT
46059839 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:46059907 original size:25 final size:25
Alignment explanation
Indices: 46059875--46059922 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46059865 ATACATAAAC
* * *
46059875 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
46059900 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
46059923 CATGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:46069066 original size:43 final size:42
Alignment explanation
Indices: 46069019--46069170 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 42
46069009 TCCTAGACGT
* * *
46069019 GGTCTTACATGCAATCACATATTGATGCCACTATCCCAGACAG
1 GGTCTTACACG-AATCACATATCGATGCCAATATCCCAGACAG
* * * *
46069062 GGTCTTACACGGATCAAATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAATCACATATCGATGCCAATATCCCAGACAG
**
46069103 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC-G
1 GGTCTTACACG-AATCACATATCGATGCCAATATCCCAGACAG
*
46069145 TCGG-CTTACACGAGAACACATATCGA
1 --GGTCTTACACGA-ATCACATATCGA
46069171 AAATCCTATG
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
41 28 0.30
42 15 0.16
43 47 0.51
44 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (42 bp):
GGTCTTACACGAATCACATATCGATGCCAATATCCCAGACAG
Found at i:46069097 original size:41 final size:43
Alignment explanation
Indices: 46069019--46069143 Score: 146
Period size: 41 Copynumber: 3.0 Consensus size: 43
46069009 TCCTAGACGT
* * * * * *
46069019 GGTCTTACATGCAATCACATATTGATGCCACTATCCCAGACAG
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAG
* *
46069062 GGTCTTACACG-GATCAAATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAG
* *
46069103 GGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
1 GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGAC
46069144 GTCGGCTTAC
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 28 0.40
42 14 0.20
43 28 0.40
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATCGATGCCAATGTCCCAGACAG
Found at i:46071815 original size:28 final size:27
Alignment explanation
Indices: 46071752--46071821 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
46071742 ATAGTGAGTC
*
46071752 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
46071779 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
46071807 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46071822 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.30, C:0.29, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:46074155 original size:42 final size:43
Alignment explanation
Indices: 46074109--46074204 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 43
46074099 AGACAGGGTG
**
46074109 TTACACGAAATCA-AA-TATAATGCCAATGTCCCTAACGTGGTC
1 TTACACGAAATCATAAGT-TAATGCCAATGTCCAGAACGTGGTC
*
46074151 TTACACGTAAATCATAAGTTGATGCCAATGTCCAGAACGTGGTC
1 TTACACG-AAATCATAAGTTAATGCCAATGTCCAGAACGTGGTC
*
46074195 TTACATGAAA
1 TTACACGAAA
46074205 ACACATATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
42 7 0.15
43 9 0.19
44 30 0.64
45 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (43 bp):
TTACACGAAATCATAAGTTAATGCCAATGTCCAGAACGTGGTC
Found at i:46078597 original size:54 final size:54
Alignment explanation
Indices: 46078532--46078639 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
46078522 AGCATGGCTG
* * *
46078532 CCAGAACAGATA-ATGTGACAGCGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
46078586 CCAGAATAGATATATATGGCAGAGCCACTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
46078640 TCAGGACGCT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
54 30 0.67
55 15 0.33
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (54 bp):
CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:46078632 original size:27 final size:27
Alignment explanation
Indices: 46078532--46078639 Score: 96
Period size: 27 Copynumber: 4.0 Consensus size: 27
46078522 AGCATGGCTG
* * * *
46078532 CCAGAACAGATAA-TGTGACAGCGTCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
*
46078558 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAT-CAGATAATTGTGGCAGAGCCA
*
46078586 CCAGAAT-AGAT-ATATATGGCAGAGCCA
1 CCAG-ATCAGATAAT-TGTGGCAGAGCCA
* *
46078613 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGATCAGATAATTGTGGCAGAGCCA
46078640 TCAGGACGCT
Statistics
Matches: 66, Mismatches: 10, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
26 9 0.14
27 40 0.61
28 15 0.23
29 2 0.03
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (27 bp):
CCAGATCAGATAATTGTGGCAGAGCCA
Found at i:46079061 original size:8 final size:8
Alignment explanation
Indices: 46079032--46079064 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
46079022 TCTCAAAATA
46079032 TCGGCTTT
1 TCGGCTTT
46079040 TCGGCATTT
1 TCGGC-TTT
46079049 T-GGCTTT
1 TCGGCTTT
46079056 TCGGCTTT
1 TCGGCTTT
46079064 T
1 T
46079065 ACCGATCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.03, C:0.21, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:46096935 original size:16 final size:15
Alignment explanation
Indices: 46096892--46096935 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
46096882 AGTAGATCGA
46096892 CAAAAGCCGAAATGC
1 CAAAAGCCGAAATGC
*
46096907 CAAAATGCTGAAATGC
1 CAAAA-GCCGAAATGC
46096923 CGAAAAGCCGAAA
1 C-AAAAGCCGAAA
46096936 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.48, C:0.23, G:0.20, T:0.09
Consensus pattern (15 bp):
CAAAAGCCGAAATGC
Found at i:46097201 original size:29 final size:29
Alignment explanation
Indices: 46097146--46097245 Score: 123
Period size: 29 Copynumber: 3.5 Consensus size: 29
46097136 GTGAGCATGA
* * *
46097146 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
46097174 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
*
46097203 ATATACAA-GTGGTTTGGGCCTAATGGGCC
1 ATATA-AATGTGATTTGGGCCTAATGGGCC
* *
46097232 ATATGAATATGATT
1 ATATAAATGTGATT
46097246 AGGCTTAATG
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 13 0.21
29 47 0.76
30 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:46100294 original size:28 final size:27
Alignment explanation
Indices: 46100237--46100300 Score: 101
Period size: 28 Copynumber: 2.3 Consensus size: 27
46100227 ATTTACTAAA
* *
46100237 ATACCCCTAAGTATGACAATTACCATT
1 ATACCCCTAAGTAAGAAAATTACCATT
46100264 ATACCCCTAAGTAAGCAAAATTACCATT
1 ATACCCCTAAGTAAG-AAAATTACCATT
46100292 ATACCCCTA
1 ATACCCCTA
46100301 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 14 0.41
28 20 0.59
ACGTcount: A:0.39, C:0.28, G:0.06, T:0.27
Consensus pattern (27 bp):
ATACCCCTAAGTAAGAAAATTACCATT
Found at i:46100475 original size:27 final size:26
Alignment explanation
Indices: 46100404--46100515 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
46100394 TGGTGGAAGC
46100404 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTATGCCACAA-TATCT
*
46100431 GTTTCTGGTGGCTATGCCACAGATCTCT
1 G-TTCTGGTGGCTATGCCACA-ATATCT
*
46100459 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTATGCCACAATATCT
* * **
46100485 GTATCTGGTGACTCTATCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
46100512 GTTC
1 GTTC
46100516 AGGCAGCCAT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 9 0.12
27 42 0.55
28 24 0.32
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:46108334 original size:49 final size:49
Alignment explanation
Indices: 46108273--46108499 Score: 292
Period size: 49 Copynumber: 4.6 Consensus size: 49
46108263 ATCTAATACG
* * * *
46108273 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* *
46108322 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
* ** * *
46108371 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACA
* * * *
46108421 CATAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACA
46108472 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
46108500 TGCGACCTCA
Statistics
Matches: 158, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
49 78 0.49
50 43 0.27
51 36 0.23
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACA
Found at i:46108507 original size:101 final size:99
Alignment explanation
Indices: 46108269--46108507 Score: 329
Period size: 101 Copynumber: 2.4 Consensus size: 99
46108259 AGCCATCTAA
* ** *
46108269 TACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCAGTACACGTAGTAGCCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCAGTACACATAGTAGCCT
*
46108333 GCACTTAGTACTACACACGTGACCAATTATCTGG
66 GCACTTAGTACTACACACGTGACCAATTATCGGG
* * * * *
46108367 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTGATACACATAGTAGCC
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCAG-TACACATAGTAGCC
* *
46108431 TGCACTTAGTACTACACACGTGATCACAGTTTTCGGG
65 TGCACTTAGTACTACACACGTGA-C-CAATTATCGGG
46108468 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
46108508 CACAGTAGAT
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
98 36 0.30
99 40 0.33
100 1 0.01
101 44 0.36
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCAGTACACATAGTAGCCT
GCACTTAGTACTACACACGTGACCAATTATCGGG
Found at i:46111226 original size:27 final size:28
Alignment explanation
Indices: 46111196--46111256 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
46111186 AATAGTAAAT
* * *
46111196 TTACTAAAATACCCCTAGGTATG-ACAA
1 TTACCAAAATACCCCTAAGTATGCAAAA
**
46111223 TTACCATTATACCCCTAAGTATGCAAAA
1 TTACCAAAATACCCCTAAGTATGCAAAA
46111251 TTACCA
1 TTACCA
46111257 TTATACCCTT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 19 0.68
28 9 0.32
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.28
Consensus pattern (28 bp):
TTACCAAAATACCCCTAAGTATGCAAAA
Found at i:46111265 original size:27 final size:27
Alignment explanation
Indices: 46111204--46111264 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 27
46111194 ATTTACTAAA
* *
46111204 ATACCCCTAGGTATGACAATTACCATT
1 ATACCCCTAAGTATGAAAATTACCATT
46111231 ATACCCCTAAGTATGCAAAATTACCATT
1 ATACCCCTAAGTATG-AAAATTACCATT
46111259 ATACCC
1 ATACCC
46111265 TTAGGGTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (27 bp):
ATACCCCTAAGTATGAAAATTACCATT
Found at i:46111442 original size:27 final size:26
Alignment explanation
Indices: 46111375--46111485 Score: 123
Period size: 27 Copynumber: 4.1 Consensus size: 26
46111365 GGAAGCGTTG
* * *
46111375 TGGTGGCTATGCCACAATTATTTGTTTC
1 TGGTGACTCTGCCACAA-TATCTG-TTC
* * *
46111403 TAGTGGCTATGCCACAGATATCTGTTC
1 TGGTGACTCTGCCACA-ATATCTGTTC
46111430 TGGTGACTCTGCCACAATATCTGTATC
1 TGGTGACTCTGCCACAATATCTGT-TC
*
46111457 TGGTGACTCTGTCACAATATCTGTTC
1 TGGTGACTCTGCCACAATATCTGTTC
46111483 TGG
1 TGG
46111486 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
26 13 0.17
27 41 0.55
28 20 0.27
29 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
TGGTGACTCTGCCACAATATCTGTTC
Found at i:46114938 original size:38 final size:39
Alignment explanation
Indices: 46114834--46115016 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 39
46114824 TCGAATGATG
* *
46114834 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-AAGTTACTAAA
* * * * *
46114874 TCCGGACTAGGAT-CCGAAGGCATTGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCTTTGTGCAAGTTACTAAA
46114913 TCCGGGCTAA-TCCCGAAGGCTTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAGTTACTAAA
* * * **
46114951 CCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCAAGTTACTA-AA
**
46114992 -CCGGGCTTCGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
46115017 AGCGAGTCGT
Statistics
Matches: 117, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
37 1 0.01
38 31 0.26
39 25 0.21
40 57 0.49
41 3 0.03
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAGTTACTAAA
Found at i:46114998 original size:78 final size:78
Alignment explanation
Indices: 46114834--46114984 Score: 189
Period size: 77 Copynumber: 1.9 Consensus size: 78
46114824 TCGAATGATG
* * *
46114834 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTG
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTG
* *
46114899 TGCGAGTTAATAAA
65 TGCAAGTCAATAAA
* **
46114913 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT-
46114976 GTGCAAGTC
64 GTGCAAGTC
46114985 GCTATAACCG
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
76 1 0.02
77 27 0.44
78 24 0.39
79 10 0.16
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTGT
GCAAGTCAATAAA
Found at i:46124213 original size:29 final size:29
Alignment explanation
Indices: 46124180--46124311 Score: 149
Period size: 29 Copynumber: 4.6 Consensus size: 29
46124170 GTGACGAGAT
46124180 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
*
46124209 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ***
46124238 TGGCACTAAGTGTGCGAGCTCGAAGGGTA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * * **
46124267 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ATA
46124296 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46124312 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:46131573 original size:40 final size:41
Alignment explanation
Indices: 46131528--46131694 Score: 164
Period size: 40 Copynumber: 4.2 Consensus size: 41
46131518 CGGAATATAA
*
46131528 CCGGATATAATCAAGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
46131568 CCGGATAGAAT-AACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
46131608 CCGGATGT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
46131648 CCGGATATAAT-TTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
46131687 CCGGATAT
1 CCGGATAT
46131695 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
39 17 0.16
40 87 0.83
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (41 bp):
CCGGATATAATCAACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46132543 original size:17 final size:19
Alignment explanation
Indices: 46132520--46132565 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
46132510 AAGAAGCATG
46132520 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
46132538 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
46132556 AATCATGCTC
1 AATCATGCTC
46132566 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:46157499 original size:24 final size:24
Alignment explanation
Indices: 46157472--46157525 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
46157462 TGGAAGGTAT
*
46157472 GTATATATGTGTTTATGTGTATAA
1 GTATATATGTGTTCATGTGTATAA
* *
46157496 GTATGTATGTGTTCATGTGTATAT
1 GTATATATGTGTTCATGTGTATAA
46157520 GTATAT
1 GTATAT
46157526 GAAGGTGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.26, C:0.02, G:0.22, T:0.50
Consensus pattern (24 bp):
GTATATATGTGTTCATGTGTATAA
Found at i:46161566 original size:28 final size:28
Alignment explanation
Indices: 46161534--46161634 Score: 96
Period size: 28 Copynumber: 3.4 Consensus size: 28
46161524 AAAGAAAAGC
*
46161534 CTTTGTGGCAAACTTGCTAAAGGACAAT
1 CTTTGTGGCAAACTTGCTAAAGGAAAAT
* *
46161562 CTTTGTGGCAAAATT-CTATAAGAAAAGAAAAGC
1 CTTTGTGGCAAACTTGCTA-AAG----GAAAA-T
*
46161595 CTTTGTGGCGAACTTGCTAAAGGAAAAT
1 CTTTGTGGCAAACTTGCTAAAGGAAAAT
*
46161623 CTTCGTGGCAAA
1 CTTTGTGGCAAA
46161635 ACTCTAGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
27 3 0.05
28 27 0.47
29 5 0.09
32 4 0.07
33 16 0.28
34 3 0.05
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (28 bp):
CTTTGTGGCAAACTTGCTAAAGGAAAAT
Found at i:46161615 original size:61 final size:61
Alignment explanation
Indices: 46161522--46161640 Score: 202
Period size: 61 Copynumber: 2.0 Consensus size: 61
46161512 AAATCACTAG
* * *
46161522 GAAAAGAAAAGCCTTTGTGGCAAACTTGCTAAAGGACAATCTTTGTGGCAAAATTCTATAA
1 GAAAAGAAAAGCCTTTGTGGCAAACTTGCTAAAGGAAAATCTTCGTGGCAAAACTCTATAA
*
46161583 GAAAAGAAAAGCCTTTGTGGCGAACTTGCTAAAGGAAAATCTTCGTGGCAAAACTCTA
1 GAAAAGAAAAGCCTTTGTGGCAAACTTGCTAAAGGAAAATCTTCGTGGCAAAACTCTA
46161641 GAAAGGTAAG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (61 bp):
GAAAAGAAAAGCCTTTGTGGCAAACTTGCTAAAGGAAAATCTTCGTGGCAAAACTCTATAA
Found at i:46161688 original size:57 final size:57
Alignment explanation
Indices: 46161530--46161723 Score: 192
Period size: 57 Copynumber: 3.3 Consensus size: 57
46161520 AGGAAAAGAA
* * * * * **
46161530 AAGCCTTTGTGGCAAACTTGCTAAAGGACAATCTTTGTGGCAAAATTCTATAAGAAAAGAA
1 AAGCCTTTGTGGCGAACCTGCTAAAGGAAAATCTTCGTGGCAAAA--CAAT-AG-AAAGGT
* **
46161591 AAGCCTTTGTGGCGAACTTGCTAAAGGAAAATCTTCGTGGCAAAACTCTAGAAAGGT
1 AAGCCTTTGTGGCGAACCTGCTAAAGGAAAATCTTCGTGGCAAAACAATAGAAAGGT
* * * *
46161648 AAGCCTTTGTTGTGAACCTGTTAAAGGAAAA-CATTTGTGGCAAAACAATAGAAAGGT
1 AAGCCTTTGTGGCGAACCTGCTAAAGGAAAATC-TTCGTGGCAAAACAATAGAAAGGT
* *
46161705 AAGACTTTATGGCGAACCT
1 AAGCCTTTGTGGCGAACCT
46161724 CTCAAACAAT
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
56 1 0.01
57 67 0.58
58 2 0.02
59 3 0.03
61 42 0.37
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (57 bp):
AAGCCTTTGTGGCGAACCTGCTAAAGGAAAATCTTCGTGGCAAAACAATAGAAAGGT
Found at i:46168073 original size:2 final size:2
Alignment explanation
Indices: 46168066--46168096 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
46168056 TCGATTGGAG
*
46168066 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46168097 GAGTATGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:46168221 original size:29 final size:29
Alignment explanation
Indices: 46168189--46168261 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
46168179 CTTCGAGCTC
*
46168189 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46168218 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46168247 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
46168262 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:46170076 original size:11 final size:11
Alignment explanation
Indices: 46170060--46170084 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46170050 AAAATTGTAA
46170060 AAACTAATATT
1 AAACTAATATT
46170071 AAACTAATATT
1 AAACTAATATT
46170082 AAA
1 AAA
46170085 GGAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:46170145 original size:24 final size:25
Alignment explanation
Indices: 46170078--46170148 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
46170068 ATTAAACTAA
46170078 TATTAAAGGAAAATGAAATAAAAAG
1 TATTAAAGGAAAATGAAATAAAAAG
46170103 TATTAAAGGAAAATGAAATAAAAAG
1 TATTAAAGGAAAATGAAATAAAAAG
*
46170128 TACTTAAA-GAAGAT-AAATAAA
1 TA-TTAAAGGAAAATGAAATAAA
46170149 GATAAAAGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
24 7 0.16
25 32 0.73
26 5 0.11
ACGTcount: A:0.63, C:0.01, G:0.14, T:0.21
Consensus pattern (25 bp):
TATTAAAGGAAAATGAAATAAAAAG
Found at i:46171698 original size:2 final size:2
Alignment explanation
Indices: 46171691--46171719 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
46171681 TTCGATGGAG
46171691 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46171720 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46171844 original size:29 final size:29
Alignment explanation
Indices: 46171820--46171884 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
46171810 TCGCACACCC
46171820 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
46171849 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
46171878 AGTGCCA
1 AGTGCCA
46171885 ATCTCGTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:46179656 original size:2 final size:2
Alignment explanation
Indices: 46179649--46179679 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
46179639 GTTCGATCGG
*
46179649 AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46179680 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:46179804 original size:29 final size:28
Alignment explanation
Indices: 46179772--46179843 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
46179762 CTTCGAGCTC
*
46179772 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATA-TTCCAGCAT
**
46179801 GCACACTTAGTGCCATATATTCCAGCAT
1 GCACACCCAGTGCCATATATTCCAGCAT
**
46179829 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
46179844 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 24 0.60
29 16 0.40
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (28 bp):
GCACACCCAGTGCCATATATTCCAGCAT
Found at i:46179832 original size:28 final size:29
Alignment explanation
Indices: 46179780--46179843 Score: 112
Period size: 28 Copynumber: 2.2 Consensus size: 29
46179770 TCGCACACCC
*
46179780 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
46179809 AGTGCCATATA-TTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
46179837 AGTGCCA
1 AGTGCCA
46179844 ATCTCGTCAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 24 0.71
29 10 0.29
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:46181538 original size:40 final size:40
Alignment explanation
Indices: 46181435--46181626 Score: 257
Period size: 40 Copynumber: 4.8 Consensus size: 40
46181425 GGGTCACTAA
*
46181435 TAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 TAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
46181475 GAGT-ATTGCTATACCCGGGCTAAGT-CCGAAGGGCATTTGTGC
1 TAGTGA---CTATATCCGGGCTAAGTCCCGAA-GGCATTTGTGC
46181517 TAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 TAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
*
46181557 TAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
* *
46181597 GAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 TAG-TGACTATATCCGGGCTAAGTCCCGAAGG
46181627 TACTTGGGTT
Statistics
Matches: 137, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
39 15 0.11
40 79 0.58
41 12 0.09
42 30 0.22
43 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
TAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
Found at i:46186727 original size:66 final size:68
Alignment explanation
Indices: 46186651--46186837 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
46186641 TAGTACCACT
*
46186651 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
46186713 CACG
65 CACG
46186717 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
46186782 ATCACG
63 ATCACG
46186788 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46186838 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:46186762 original size:71 final size:71
Alignment explanation
Indices: 46186674--46186837 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46186664 CGATTTGTCT
46186674 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46186739 CTTTCA
66 CTTTCA
46186745 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46186810 CTTTCA
66 CTTTCA
46186816 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46186838 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46186875 original size:71 final size:70
Alignment explanation
Indices: 46186674--46186871 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
46186664 CGATTTGTCT
* * *
46186674 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46186739 CTTTCA
65 CTTTCA
* * *
46186745 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46186810 CTTTCA
65 CTTTCA
* *
46186816 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
46186872 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46194282 original size:66 final size:68
Alignment explanation
Indices: 46194206--46194392 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
46194196 TAGTACCACT
*
46194206 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
46194268 CACG
65 CACG
46194272 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
46194337 ATCACG
63 ATCACG
46194343 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
46194393 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:46194317 original size:71 final size:71
Alignment explanation
Indices: 46194229--46194392 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
46194219 CGATTTGTCT
46194229 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46194294 CTTTCA
66 CTTTCA
46194300 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
46194365 CTTTCA
66 CTTTCA
46194371 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
46194393 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:46194430 original size:71 final size:70
Alignment explanation
Indices: 46194229--46194426 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
46194219 CGATTTGTCT
* * *
46194229 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46194294 CTTTCA
65 CTTTCA
* * *
46194300 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
46194365 CTTTCA
65 CTTTCA
* *
46194371 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
46194427 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:46196744 original size:20 final size:20
Alignment explanation
Indices: 46196721--46196768 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
46196711 CAGGGGTACA
* *
46196721 AGATAGCTTATGAAACATGC
1 AGATAGCTTATCAAACACGC
*
46196741 AGATAGTATTATCAAACACGC
1 AGATAG-CTTATCAAACACGC
46196762 AGATAGC
1 AGATAGC
46196769 ATCATCACCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.23
Consensus pattern (20 bp):
AGATAGCTTATCAAACACGC
Found at i:46196757 original size:21 final size:21
Alignment explanation
Indices: 46196728--46196767 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46196718 ACAAGATAGC
* *
46196728 TTATGAAACATGCAGATAGTA
1 TTATCAAACACGCAGATAGTA
46196749 TTATCAAACACGCAGATAG
1 TTATCAAACACGCAGATAG
46196768 CATCATCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.25
Consensus pattern (21 bp):
TTATCAAACACGCAGATAGTA
Done.