Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 158 of 328
Found at i:46196775 original size:21 final size:21
Alignment explanation
Indices: 46196733--46196775 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
46196723 ATAGCTTATG
* * *
46196733 AAACATGCAGATAGTATTATC
1 AAACACGCAGATAGCATCATC
46196754 AAACACGCAGATAGCATCATC
1 AAACACGCAGATAGCATCATC
46196775 A
1 A
46196776 CCATTAGTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.21, G:0.14, T:0.21
Consensus pattern (21 bp):
AAACACGCAGATAGCATCATC
Found at i:46199417 original size:40 final size:40
Alignment explanation
Indices: 46199225--46199410 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
46199215 TCGAATGATG
* * *
46199225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
46199265 TCCGGACTAAGAT-CTGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46199305 TCTGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46199345 TCCGGGTTAAGTCCCGGAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46199386 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46199411 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 116 0.92
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46202571 original size:43 final size:42
Alignment explanation
Indices: 46202524--46202685 Score: 179
Period size: 43 Copynumber: 3.8 Consensus size: 42
46202514 AATGCCAACA
46202524 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCATTG
1 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCA-TG
** *
46202567 TCCCAGACAG-GGTCTTACA-CAAATCAAATA-CGATGCCGATG
1 TCCCAGAC-GTGGTCTTACATGTAATCACATATCGATGCC-ATG
* * * *
46202608 TCCCAGACATGGTCTTACACGTAATCACATATTGATGCCAACG
1 TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCC-ATG
*
46202651 TCCCAGACGTGGTCTTACATG-AGAACACATATCGA
1 TCCCAGACGTGGTCTTACATGTA-ATCACATATCGA
46202686 AAATCCTATG
Statistics
Matches: 99, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
41 26 0.26
42 18 0.18
43 54 0.55
44 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGTAATCACATATCGATGCCATG
Found at i:46203942 original size:21 final size:21
Alignment explanation
Indices: 46203903--46203942 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
46203893 TTAATGAGCT
*
46203903 GAAAATTCCAGAAATCTTCAA
1 GAAAATTCCAGAAAGCTTCAA
* *
46203924 GAAATTTCCAGGAAGCTTC
1 GAAAATTCCAGAAAGCTTC
46203943 CTTGCATATG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (21 bp):
GAAAATTCCAGAAAGCTTCAA
Found at i:46214882 original size:28 final size:28
Alignment explanation
Indices: 46214836--46214904 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
46214826 TTTAAAACCC
*
46214836 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
46214863 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
46214891 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
46214905 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:46216553 original size:20 final size:20
Alignment explanation
Indices: 46216530--46216567 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46216520 CACATCCAAA
*
46216530 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
46216550 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
46216568 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:46222871 original size:28 final size:28
Alignment explanation
Indices: 46222839--46222895 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
46222829 TAGGGTATAT
46222839 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
46222867 GGTAATTTTGCTCTTTAGGGGTAATTTC
1 GGTAATTTTGCTCTTTAGGGGTAATTTC
46222895 G
1 G
46222896 TGATCTACGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.46
Consensus pattern (28 bp):
GGTAATTTTGCTCTTTAGGGGTAATTTC
Found at i:46224537 original size:20 final size:20
Alignment explanation
Indices: 46224514--46224551 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46224504 CACATCCAAA
*
46224514 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
46224534 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
46224552 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:46236744 original size:30 final size:30
Alignment explanation
Indices: 46236710--46236768 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
46236700 TCCTTGACTC
46236710 AAACTTTGACAAAATTACA-TTTTTGCCCCT
1 AAACTTTGACAAAATTACAGTTTTT-CCCCT
* * *
46236740 AAACTTTTACATATTTACAGTTTTTCCCC
1 AAACTTTGACAAAATTACAGTTTTTCCCC
46236769 AAGGCTCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.31, C:0.24, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTGACAAAATTACAGTTTTTCCCCT
Found at i:46238251 original size:12 final size:12
Alignment explanation
Indices: 46238236--46238266 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
46238226 AAAAATTTTA
46238236 AAAAAAAGTTCG
1 AAAAAAAGTTCG
46238248 AAAAAAAGTTCG
1 AAAAAAAGTTCG
46238260 AAAAAAA
1 AAAAAAA
46238267 TTGGTTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.68, C:0.06, G:0.13, T:0.13
Consensus pattern (12 bp):
AAAAAAAGTTCG
Found at i:46247304 original size:48 final size:48
Alignment explanation
Indices: 46247237--46247554 Score: 496
Period size: 48 Copynumber: 6.9 Consensus size: 48
46247227 TATATATGTG
46247237 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
46247285 TGTGGTAAAGCCGACTGGCTAA--TG-----TG-A--A-ATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
46247322 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
46247370 CGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
*
46247418 CGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
46247466 CGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
46247514 TGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGAT
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGAT
46247555 GTGTGTATAT
Statistics
Matches: 251, Mismatches: 8, Indels: 22
0.89 0.03 0.08
Matches are distributed among these distances:
37 30 0.12
38 1 0.00
39 2 0.01
40 1 0.00
41 2 0.01
44 2 0.01
45 1 0.00
46 2 0.01
47 1 0.00
48 209 0.83
ACGTcount: A:0.35, C:0.08, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:46247326 original size:37 final size:37
Alignment explanation
Indices: 46247276--46247357 Score: 155
Period size: 37 Copynumber: 2.2 Consensus size: 37
46247266 TATGTATGAG
*
46247276 ATATGTATATGTGGTAAAGCCGACTGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46247313 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46247350 ATATGTAT
1 ATATGTAT
46247358 GAGATATGTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.32
Consensus pattern (37 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:46247745 original size:37 final size:37
Alignment explanation
Indices: 46247695--46247797 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
46247685 GGAAATATAT
46247695 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
46247732 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
46247769 TCTGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
46247798 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:46249128 original size:40 final size:40
Alignment explanation
Indices: 46249075--46249313 Score: 433
Period size: 40 Copynumber: 6.0 Consensus size: 40
46249065 TTGAGAGTTA
*
46249075 TATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
46249115 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
*
46249155 TATGTCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
46249195 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
46249235 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
* * *
46249275 TATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
46249314 ATGTGTATTC
Statistics
Matches: 193, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 193 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGT
Found at i:46249527 original size:25 final size:25
Alignment explanation
Indices: 46249477--46249527 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
46249467 TGTGTAACAA
* *
46249477 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
46249502 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
46249527 C
1 C
46249528 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:46252455 original size:40 final size:40
Alignment explanation
Indices: 46252393--46252645 Score: 331
Period size: 40 Copynumber: 6.4 Consensus size: 40
46252383 AAACCAAGTA
* * * *
46252393 CCTTCGGGATTTA-ACCGG-ATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATG
*
46252432 CCTTCGGGACTTAGCCCGG-ATATAGT---TCGGACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATG
*
46252469 CCTTCGGGACTTAGCCCGG-ATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATG
*
46252509 CCTTCGAGACTTAGCCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
*
46252549 CCTTCGGGACTTAGGCCGGAATTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
* * *
46252589 CCTTCGGGACTTAGCCTGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
46252629 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
46252646 CGTTATCATC
Statistics
Matches: 194, Mismatches: 15, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
37 35 0.18
39 12 0.06
40 145 0.75
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATG
Found at i:46255918 original size:48 final size:48
Alignment explanation
Indices: 46255847--46256063 Score: 407
Period size: 48 Copynumber: 4.5 Consensus size: 48
46255837 TATATATGTG
*
46255847 TGTGGTAAAGCCGAATGGATAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
* *
46255895 TGTGGTAAAGCCGACTGGCTAATGTGAAATATGTATGAGACATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
46255943 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
46255991 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
1 TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
46256039 TGTGGTAAAGCCGAATGGCTAATGT
1 TGTGGTAAAGCCGAATGGCTAATGT
46256064 ATGTATACGT
Statistics
Matches: 164, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 164 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
TGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATA
Found at i:46256069 original size:32 final size:32
Alignment explanation
Indices: 46256031--46256095 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
46256021 ATGTATGAGA
*
46256031 TATGTATATGTGGTAAAGCCGAATGGCTAATG
1 TATGTATACGTGGTAAAGCCGAATGGCTAATG
46256063 TATGTATACGTGGTAAAGCCGAATGGCTAATG
1 TATGTATACGTGGTAAAGCCGAATGGCTAATG
46256095 T
1 T
46256096 GAAATATGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.31
Consensus pattern (32 bp):
TATGTATACGTGGTAAAGCCGAATGGCTAATG
Found at i:46256076 original size:80 final size:80
Alignment explanation
Indices: 46255983--46256143 Score: 304
Period size: 80 Copynumber: 2.0 Consensus size: 80
46255973 ATGTATGAGA
* *
46255983 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAA
1 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAA
46256048 GCCGAATGGCTAATG
66 GCCGAATGGCTAATG
46256063 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAA
1 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAA
46256128 GCCGAATGGCTAATG
66 GCCGAATGGCTAATG
46256143 T
1 T
46256144 GAAATATGTA
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (80 bp):
TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAA
GCCGAATGGCTAATG
Found at i:46256084 original size:128 final size:128
Alignment explanation
Indices: 46255936--46256191 Score: 494
Period size: 128 Copynumber: 2.0 Consensus size: 128
46255926 TGTATGAGAC
* *
46255936 ATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAG
1 ATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAG
46256001 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
46256064 ATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAG
1 ATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAG
46256129 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
66 CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
46256192 GAAATATATA
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
128 126 1.00
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.30
Consensus pattern (128 bp):
ATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAAG
CCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGT
Found at i:46256099 original size:176 final size:176
Alignment explanation
Indices: 46255887--46256235 Score: 644
Period size: 176 Copynumber: 2.0 Consensus size: 176
46255877 ATGTATGAGA
* * *
46255887 TATGTATATGTGGTAAAGCCGACTGGCTAATGTGAAATATGTATGAGACATGTATATGTGGTAAA
1 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGACATGTATACGTGGTAAA
46255952 GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* *
46256017 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATG
131 AAATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATG
*
46256063 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATACGTGGTAAA
1 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGACATGTATACGTGGTAAA
46256128 GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
66 GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
46256193 AAATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTA
131 AAATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTA
46256236 GTGTGAAATA
Statistics
Matches: 167, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
176 167 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (176 bp):
TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGACATGTATACGTGGTAAA
GCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
AAATATATATGAGATATGTATATATGGTAAAGCCGAATGGCTAATG
Found at i:46256255 original size:48 final size:48
Alignment explanation
Indices: 46256063--46256248 Score: 327
Period size: 48 Copynumber: 3.9 Consensus size: 48
46256053 ATGGCTAATG
*
46256063 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
*
46256111 TATGTATACGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
*
46256159 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGA
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
* *
46256207 TATGTATATATGGTAAAGCCGAATGGCTAGTGTGAAATATGT
1 TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
46256249 CGGAGATGTG
Statistics
Matches: 133, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 133 1.00
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (48 bp):
TATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGA
Found at i:46256450 original size:37 final size:37
Alignment explanation
Indices: 46256396--46256498 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
46256386 GGAAATATAT
*
46256396 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
46256433 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** *
46256470 TCTAGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
46256499 GGACTATTTG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:46263858 original size:29 final size:29
Alignment explanation
Indices: 46263824--46263898 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
46263814 TACTCGATTT
*
46263824 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
46263853 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
46263882 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
46263899 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:46263915 original size:29 final size:29
Alignment explanation
Indices: 46263882--46263955 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
46263872 CCTTCGAGCT
46263882 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
46263911 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
46263940 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
46263956 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:46267627 original size:20 final size:20
Alignment explanation
Indices: 46267561--46267627 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
46267551 ATTTTAGTAA
*
46267561 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
46267581 ACATGACATGTAT-ACTATGC
1 ACATGATATGTATGA-TATGC
46267601 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
46267621 ACATGAT
1 ACATGAT
46267628 GTATTCATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
19 1 0.02
20 40 0.95
21 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:46267709 original size:24 final size:25
Alignment explanation
Indices: 46267678--46267831 Score: 199
Period size: 25 Copynumber: 6.2 Consensus size: 25
46267668 AGGAAGTGTA
46267678 AAAGGGCTTATG-CCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
*
46267702 AAATGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
46267727 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTATGAT
* *
46267752 AAAGGGCTTATGCCTCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
46267776 AAAGGGCTTATGCCCCAGTTATTA-
1 AAAGGGCTTATGCCCCAGTTATGAT
*
46267800 AAAGAGGC-TAGGCCTCCAGTTATATGAT
1 AAAG-GGCTTATGCC-CCAG-T-TATGAT
46267828 AAAG
1 AAAG
46267832 CAGCTATGCT
Statistics
Matches: 117, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
24 43 0.37
25 65 0.56
26 1 0.01
27 4 0.03
28 4 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAGGGCTTATGCCCCAGTTATGAT
Found at i:46267780 original size:49 final size:49
Alignment explanation
Indices: 46267676--46267822 Score: 201
Period size: 49 Copynumber: 3.0 Consensus size: 49
46267666 GGAGGAAGTG
* *
46267676 TAAAAGGGCTTATG-CCCAGTTATGATAAATGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCTCAGTTAT
*
46267724 GATAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCTCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCTCAGTTAT
* *
46267774 TAAAAGGGCTTATGCCCCAGTTATTA-AAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGATAAAG-GGCTTATGCCT-CAGTTAT
46267823 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
48 11 0.12
49 45 0.51
50 33 0.37
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.29
Consensus pattern (49 bp):
TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCTCAGTTAT
Found at i:46269569 original size:50 final size:50
Alignment explanation
Indices: 46269492--46269622 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 50
46269482 TGATATGTGT
* * * *
46269492 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGAAAGAGGAGAGC
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGAC-CTCGAAAGAAGAGAGC
* * * *
46269542 CAGTGTAAGACCATGTCTAGGATATGGCATCGACCTCGATATAAGAGAGT
1 CAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGAAAGAAGAGAGC
*
46269592 CAATGTAAGACCATGTCTAGGACATTGGCAT
1 CAGTGTAAGACCATGTCTAGGACA-TGGCAT
46269623 TGTATTGTGA
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.01
50 62 0.90
51 6 0.09
ACGTcount: A:0.31, C:0.19, G:0.29, T:0.21
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTAGGACATGGCATCGACCTCGAAAGAAGAGAGC
Found at i:46269675 original size:43 final size:43
Alignment explanation
Indices: 46269595--46269707 Score: 113
Period size: 43 Copynumber: 2.7 Consensus size: 43
46269585 AGAGAGTCAA
* *
46269595 TGTAAGACCATGTCTAGGACATTGGCATTGTATTGTGATTTCG
1 TGTAAGACCATGTCTAGGACAGTGGCATCGTATTGTGATTTCG
* * * ** *
46269638 TGTAAGACCCTGTGTGGGACAGTGGCATCG-ATATGTGATAACA
1 TGTAAGACCATGTCTAGGACAGTGGCATCGTAT-TGTGATTTCG
* *
46269681 TGTAAGACCATATCTAGGATA-TGGCAT
1 TGTAAGACCATGTCTAGGACAGTGGCAT
46269708 TGTACGAGCT
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
42 8 0.14
43 48 0.86
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATGTCTAGGACAGTGGCATCGTATTGTGATTTCG
Found at i:46273030 original size:17 final size:18
Alignment explanation
Indices: 46272988--46273036 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
46272978 AGTTGAAAAG
46272988 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
46273007 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
46273024 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
46273037 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:46273924 original size:40 final size:40
Alignment explanation
Indices: 46273858--46274008 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
46273848 AAATTGAATG
* * *
46273858 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
46273897 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
46273937 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* *
46273977 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
46274009 ACTTGATTAT
Statistics
Matches: 91, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
39 16 0.18
40 73 0.80
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:46274022 original size:40 final size:40
Alignment explanation
Indices: 46273894--46274024 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
46273884 TATGCTGGAA
* * * *
46273894 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
** * *
46273934 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTT-
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
*
46273974 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACTTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-TTG
46274014 ATTATATCCGG
1 ATTATATCCGG
46274025 TTATATTCCG
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
39 3 0.04
40 70 0.95
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGATTG
Found at i:46276156 original size:29 final size:29
Alignment explanation
Indices: 46276092--46276157 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
46276082 CTTTCATTTA
* *
46276092 TTTCACAATTTAACCCCTCAATTTACACT
1 TTTCTCAATTTAACCCCTCAATATACACT
* * *
46276121 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAACCCCTCAATATACACT
46276149 TTTACTCAA
1 TTT-CTCAA
46276158 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAACCCCTCAATATACACT
Found at i:46282250 original size:12 final size:12
Alignment explanation
Indices: 46282233--46282273 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
46282223 GGTTTTCTCA
46282233 AAATGGAAATAG
1 AAATGGAAATAG
46282245 AAATGGAAATAG
1 AAATGGAAATAG
*
46282257 AAATGAAAATGAG
1 AAATGGAAAT-AG
46282270 AAAT
1 AAAT
46282274 TATCTATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 21 0.78
13 6 0.22
ACGTcount: A:0.61, C:0.00, G:0.22, T:0.17
Consensus pattern (12 bp):
AAATGGAAATAG
Found at i:46284832 original size:26 final size:26
Alignment explanation
Indices: 46284725--46284835 Score: 141
Period size: 27 Copynumber: 4.2 Consensus size: 26
46284715 AGGAAGCGTC
* *
46284725 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
46284752 CTGGTGGCTCTACCACATATATCTATT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
46284779 CTGGTGGCTCTGCCACGATTATCTGTT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* *
46284806 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
46284832 CTGG
1 CTGG
46284836 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 16 0.22
27 56 0.76
28 2 0.03
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:46291126 original size:24 final size:24
Alignment explanation
Indices: 46291094--46291144 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
46291084 GTCTGTCAGT
46291094 AGAGGATTTAGGAGCTCATAAGGG
1 AGAGGATTTAGGAGCTCATAAGGG
* *
46291118 AGAGGATTTAGGAGCTGATTAGGG
1 AGAGGATTTAGGAGCTCATAAGGG
46291142 AGA
1 AGA
46291145 ACAATGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.39, T:0.22
Consensus pattern (24 bp):
AGAGGATTTAGGAGCTCATAAGGG
Found at i:46292597 original size:27 final size:25
Alignment explanation
Indices: 46292557--46292657 Score: 103
Period size: 27 Copynumber: 3.8 Consensus size: 25
46292547 AAGCGTCCTA
*
46292557 GTGGCTATGCCACAATTATCTGATTTG
1 GTGGCTCTGCCAC-ATTATCTG-TTTG
* *
46292584 GTGGCTTTGTCACATATATCTGTTTTG
1 GTGGCTCTGCCACAT-TATCTG-TTTG
46292611 GTGGCTCTGCCACGATTATCTGTTCTG
1 GTGGCTCTGCCAC-ATTATCTGTT-TG
* *
46292638 GTGACTCTGTCACATTATCT
1 GTGGCTCTGCCACATTATCT
46292658 ATTCTGGCAG
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
26 11 0.17
27 51 0.80
28 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.41
Consensus pattern (25 bp):
GTGGCTCTGCCACATTATCTGTTTG
Found at i:46308884 original size:28 final size:28
Alignment explanation
Indices: 46308819--46308890 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 28
46308809 ATAGTGAATC
* *
46308819 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATAGA-TATCAGCT
46308848 CGCACACTTAGTGCTATAGA-ATCAAGCT
1 CGCACACTTAGTGCTATAGATATC-AGCT
46308876 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46308891 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.47
29 19 0.47
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAGATATCAGCT
Found at i:46312672 original size:25 final size:23
Alignment explanation
Indices: 46312641--46312690 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
46312631 CACCATGTAG
46312641 ACAAGAGAGTCAAAATTATGTGT
1 ACAAGAGAGTCAAAATTATGTGT
46312664 ACAAGAGAGTCAAAATTATGTGT
1 ACAAGAGAGTCAAAATTATGTGT
46312687 ACAA
1 ACAA
46312691 TCGAGCTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.46, C:0.10, G:0.20, T:0.24
Consensus pattern (23 bp):
ACAAGAGAGTCAAAATTATGTGT
Found at i:46325570 original size:11 final size:11
Alignment explanation
Indices: 46325556--46325580 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46325546 AAAATTGTAA
46325556 AAACTAATATT
1 AAACTAATATT
46325567 AAACTAATATT
1 AAACTAATATT
46325578 AAA
1 AAA
46325581 GGAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:46325602 original size:25 final size:25
Alignment explanation
Indices: 46325574--46325631 Score: 100
Period size: 24 Copynumber: 2.3 Consensus size: 25
46325564 ATTAAACTAA
46325574 TATTAAAGGAAAATGAAATAAAAAG
1 TATTAAAGGAAAATGAAATAAAAAG
46325599 TATT-AAGGAAAATGAAATAAAAAG
1 TATTAAAGGAAAATGAAATAAAAAG
46325623 TACTTAAAG
1 TA-TTAAAG
46325632 AAGATAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
24 22 0.71
25 6 0.19
26 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.16, T:0.22
Consensus pattern (25 bp):
TATTAAAGGAAAATGAAATAAAAAG
Found at i:46325608 original size:24 final size:24
Alignment explanation
Indices: 46325574--46325642 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 24
46325564 ATTAAACTAA
46325574 TATTAAAGGAAAATGAAATAAAAAG
1 TATT-AAGGAAAATGAAATAAAAAG
46325599 TATTAAGGAAAATGAAATAAAAAG
1 TATTAAGGAAAATGAAATAAAAAG
* *
46325623 TACTTAAAGAAGAT-AAATAA
1 TA-TTAAGGAAAATGAAATAA
46325643 GATAAAAGTG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 28 0.68
25 13 0.32
ACGTcount: A:0.62, C:0.01, G:0.14, T:0.22
Consensus pattern (24 bp):
TATTAAGGAAAATGAAATAAAAAG
Found at i:46327333 original size:29 final size:29
Alignment explanation
Indices: 46327301--46327373 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
46327291 CTTCGAGCTC
*
46327301 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46327330 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46327359 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
46327374 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:46335152 original size:2 final size:2
Alignment explanation
Indices: 46335145--46335175 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
46335135 TCGATCGGAG
*
46335145 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46335176 GAGTACGCAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:46335300 original size:29 final size:29
Alignment explanation
Indices: 46335268--46335340 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
46335258 CTTCGAGCTC
*
46335268 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46335297 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
46335326 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
46335341 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:46340272 original size:46 final size:46
Alignment explanation
Indices: 46340205--46340333 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
46340195 TATTTGGGCA
* *
46340205 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
46340251 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
46340297 CCCGAGCTCGTTGATTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46340334 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.19, C:0.22, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:46343280 original size:15 final size:15
Alignment explanation
Indices: 46343241--46343311 Score: 74
Period size: 15 Copynumber: 4.7 Consensus size: 15
46343231 GTATCTTGGG
*
46343241 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
46343256 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
46343271 TTTCTTTATTC-CGA
1 TTTCTTTATTCTGGA
*
46343285 GTTTCTCTA-TCTTGGA
1 -TTTCTTTATTC-TGGA
46343301 TTTCTTTATTC
1 TTTCTTTATTC
46343312 GTTTTCTTGT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
14 4 0.09
15 37 0.82
16 4 0.09
ACGTcount: A:0.13, C:0.20, G:0.11, T:0.56
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:46345741 original size:46 final size:45
Alignment explanation
Indices: 46345674--46345841 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 45
46345664 TATTTGGGCA
*
46345674 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGC
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGC
* * ** * * *
46345719 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTA-ACAAGGC
1 -TCCGAACTCATTGAGTTGAGTCCGAGTTCAT-TTATGGATGCGA-GC
* *
46345766 ATCC-AAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 -TCCGAA-CTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGC
* *
46345812 CCCTGAGCTCATTGAGTTGAGTCCGAGTTC
1 TCC-GAACTCATTGAGTTGAGTCCGAGTTC
46345842 GCTTATGGGC
Statistics
Matches: 98, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.02
46 62 0.63
47 34 0.35
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGC
Found at i:46345829 original size:93 final size:93
Alignment explanation
Indices: 46345670--46345842 Score: 260
Period size: 93 Copynumber: 1.9 Consensus size: 93
46345660 GGGATATTTG
* * * * *
46345670 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
46345735 TTGAGTCCGAGTTCGTGAGATGTAACAA
66 TTGAGTCCGAGTTCGTGAGATGTAACAA
*
46345763 GGCATCC-AAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC-CCCTGAGCTCATTG
1 GGCATCCGAA-CTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC-GAACTCATTG
46345826 AGTTGAGTCCGAGTTCG
64 AGTTGAGTCCGAGTTCG
46345843 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
92 4 0.06
93 68 0.94
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACAA
Found at i:46352345 original size:6 final size:6
Alignment explanation
Indices: 46352327--46352420 Score: 77
Period size: 6 Copynumber: 15.3 Consensus size: 6
46352317 AAGAAACATT
* *
46352327 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGT ATCAGGTA A-CAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* * *
46352376 ATCAAA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
46352421 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.07
6 56 0.80
7 7 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:46352379 original size:31 final size:31
Alignment explanation
Indices: 46352341--46352420 Score: 142
Period size: 31 Copynumber: 2.6 Consensus size: 31
46352331 GAACTAGAAT
* *
46352341 CAGAATCAGAATCAGAATTAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
46352372 CAGAATCAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGTATCAGGTAA
46352403 CAGAATCAAAATCAGAAT
1 CAGAATCAAAATCAGAAT
46352421 GTGAATGCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (31 bp):
CAGAATCAAAATCAGAATCAGTATCAGGTAA
Found at i:46352594 original size:27 final size:26
Alignment explanation
Indices: 46352552--46352653 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
46352542 GCTCAGTTAT
* *
46352552 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
46352579 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* * *
46352605 TAGATATTTGTAGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
46352633 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
46352654 TTAACAAAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.09
27 51 0.80
28 7 0.11
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:46352840 original size:22 final size:23
Alignment explanation
Indices: 46352812--46352873 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
46352802 GCAAATATGT
*
46352812 TTGGCACAGATCCATAAT-TAGG
1 TTGGCACAGAGCCATAATGTAGG
46352834 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAGAGCCATAATGTAGG
* *
46352856 TTGACACAAAGCCATAAT
1 TTGGCACAGAGCCATAAT
46352874 CAAAAGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (23 bp):
TTGGCACAGAGCCATAATGTAGG
Found at i:46353361 original size:27 final size:27
Alignment explanation
Indices: 46353303--46353739 Score: 572
Period size: 27 Copynumber: 16.3 Consensus size: 27
46353293 AGGGCAAAAT
* * * *
46353303 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
46353329 GATAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46353356 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46353383 GGTAATTCTACCCTACAGGGATATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
46353410 GATAATTTTACCCTACAGAGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46353437 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
46353464 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46353491 GATAATTCTACCCTACAGGGGTGTTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
46353518 GGTAATTCTACCCTATAGGGTTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
46353545 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
46353572 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46353599 GGTAATTTTACCCTACA-GGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
46353625 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
46353652 CGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
46353679 GATAATTCTACTCTACAGGGGTGTTAC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
46353706 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
46353733 GGTAATT
1 GGTAATT
46353740 TTATAAATCG
Statistics
Matches: 352, Mismatches: 57, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 37 0.11
27 315 0.89
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:46353754 original size:27 final size:27
Alignment explanation
Indices: 46353724--46354064 Score: 276
Period size: 27 Copynumber: 12.6 Consensus size: 27
46353714 TACCCTATAG
* *
46353724 GGGTATTTTGGTAATTTTATAAATCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
***** * **
46353751 GGGTAAAACAGTAATTCTGTAAATCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* * * *
46353778 GGGTACTTTGGTAGTTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATCAA
* *** **
46353805 GGGTGTTTCAATAATTTTACAGGTCGAA
1 GGGTATTTTGGTAATTTTACAAATC-AA
** *
46353833 -GGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTACAAATCAA
*
46353858 GGGATATTTTGGTAATTTTACAAA-CTAG
1 GGG-TATTTTGGTAATTTTACAAATC-AA
* * *
46353886 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
*
46353913 GGGTATTTTGGTAATTTTATAAA-CAAA
1 GGGTATTTTGGTAATTTTACAAATC-AA
* *
46353940 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
** *
46353967 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
46353994 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAATCAA
* *
46354021 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCAA
*
46354048 GGGTATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
46354065 GGTAAACTAA
Statistics
Matches: 255, Mismatches: 51, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 244 0.96
28 6 0.02
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAATCAA
Found at i:46353901 original size:54 final size:54
Alignment explanation
Indices: 46353833--46354064 Score: 349
Period size: 54 Copynumber: 4.3 Consensus size: 54
46353823 ACAGGTCGAA
* * * * * * *
46353833 GGTATTTCAGTAATTTCACAAATCAGGGATATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
*
46353887 GGTATTTT-GATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAG
1 GGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
* *
46353941 GGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
*
46353995 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
1 GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
46354049 GGTATTTTAGTAATTT
1 GGTATTTTAGTAATTT
46354065 GGTAAACTAA
Statistics
Matches: 162, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 160 0.99
55 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
GGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAG
Found at i:46354070 original size:81 final size:80
Alignment explanation
Indices: 46353833--46354071 Score: 307
Period size: 81 Copynumber: 3.0 Consensus size: 80
46353823 ACAGGTCGAA
** * * * * *
46353833 GGTATTTCAGTAATTTCACAAATCAGGGATATTTTGGTAATTTTACAAACTAGGGGTATTTTGAT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTG-T
** *
46353898 AATTTTACAAACCAGG
65 AATTTTGTAAACCAAG
* * * *
46353914 GGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT-GT
46353979 AATTTTGTAAACCAAG
65 AATTTTGTAAACCAAG
*
46353995 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGT
1 GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT-GT
*
46354060 AATTTGGTAAAC
65 AATTTTGTAAAC
46354072 TAAAGTATTC
Statistics
Matches: 136, Mismatches: 21, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
81 135 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (80 bp):
GGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGTA
ATTTTGTAAACCAAG
Found at i:46354071 original size:27 final size:27
Alignment explanation
Indices: 46353857--46354064 Score: 290
Period size: 27 Copynumber: 7.7 Consensus size: 27
46353847 TTCACAAATC
* *
46353857 AGGGATATTTTGGTAATTTTACAAACTA
1 AGGG-TATTTTGGTAATTTTATAAACCA
* * *
46353885 GGGGTATTTTGATAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
46353912 GGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTGGTAATTTTATAAACCA
* *
46353939 AGGGTATTTTAGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
46353966 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
46353993 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
46354020 GGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTGGTAATTTTATAAACCA
*
46354047 AGGGTATTTTAGTAATTT
1 AGGGTATTTTGGTAATTT
46354065 GGTAAACTAA
Statistics
Matches: 161, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 158 0.98
28 3 0.02
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAACCA
Found at i:46361949 original size:29 final size:28
Alignment explanation
Indices: 46361915--46361986 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 28
46361905 TAATCAACCA
*
46361915 CGCACACTTAGTGCCATGTACTTT-AAAC
1 CGCACACTTAGTGCCATGCA-TTTCAAAC
*
46361943 TCGCACACTTAGTGCCATGCATTTCAAGC
1 -CGCACACTTAGTGCCATGCATTTCAAAC
46361972 CGGCACACTTAGTGC
1 C-GCACACTTAGTGC
46361987 TAATCTCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
28 4 0.10
29 35 0.90
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCCATGCATTTCAAAC
Found at i:46366058 original size:27 final size:28
Alignment explanation
Indices: 46366002--46366071 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
46365992 AAATTTGTAC
46366002 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
46366030 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
46366057 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46366072 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:46366082 original size:27 final size:27
Alignment explanation
Indices: 46366002--46366083 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
46365992 AAATTTGTAC
* *
46366002 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
46366030 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
*
46366057 AGCACTGAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
46366084 GCTTTTGAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 29 0.60
28 18 0.38
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:46372288 original size:29 final size:29
Alignment explanation
Indices: 46372249--46372327 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
46372239 CTTAATAATC
*
46372249 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46372279 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46372308 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
46372328 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46379558 original size:29 final size:29
Alignment explanation
Indices: 46379519--46379597 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
46379509 CTTAATAATC
*
46379519 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
46379549 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
46379578 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
46379598 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:46382451 original size:22 final size:22
Alignment explanation
Indices: 46382425--46382483 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 22
46382415 TAAACTAATT
46382425 TAATATAAAATCAAAAATAAAA
1 TAATATAAAATCAAAAATAAAA
46382447 TAATA-AATAAT-AAATAATAAAA
1 TAATATAA-AATCAAA-AATAAAA
*
46382469 TAAAATAAAA-CAAAA
1 TAATATAAAATCAAAA
46382484 TAATATCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
21 6 0.19
22 24 0.75
23 2 0.06
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (22 bp):
TAATATAAAATCAAAAATAAAA
Found at i:46384747 original size:18 final size:18
Alignment explanation
Indices: 46384724--46384786 Score: 126
Period size: 18 Copynumber: 3.5 Consensus size: 18
46384714 ACTACTGACT
46384724 GTGGCGACGGCCACGACA
1 GTGGCGACGGCCACGACA
46384742 GTGGCGACGGCCACGACA
1 GTGGCGACGGCCACGACA
46384760 GTGGCGACGGCCACGACA
1 GTGGCGACGGCCACGACA
46384778 GTGGCGACG
1 GTGGCGACG
46384787 TTTAGGTTGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.21, C:0.32, G:0.41, T:0.06
Consensus pattern (18 bp):
GTGGCGACGGCCACGACA
Found at i:46385137 original size:18 final size:18
Alignment explanation
Indices: 46385109--46385158 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
46385099 AGGTTGGCTA
* *
46385109 CGGGGTTCGACGGTGGCG
1 CGGGGTGCGACGGCGGCG
* * *
46385127 TGGGGTGCGACGACGGTG
1 CGGGGTGCGACGGCGGCG
46385145 CGGGGTGCGACGGC
1 CGGGGTGCGACGGC
46385159 AGTGATCGGC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.08, C:0.22, G:0.56, T:0.14
Consensus pattern (18 bp):
CGGGGTGCGACGGCGGCG
Found at i:46392346 original size:5 final size:5
Alignment explanation
Indices: 46392338--46392385 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
46392328 TATAAAATCA
* *
46392338 AAAAT AAAAT AAAAT -AAAT AAATAAT AAAAT AAAAT GAAAC AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT -AA-AAT AAAAT AAAAT AAAAT AAAAT AA
46392386 TATCTTCCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
4 4 0.11
5 26 0.72
6 3 0.08
7 3 0.08
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:46392351 original size:17 final size:18
Alignment explanation
Indices: 46392329--46392385 Score: 57
Period size: 17 Copynumber: 3.2 Consensus size: 18
46392319 CTAATTTAAT
*
46392329 ATAAAATCAA-AAATAAA
1 ATAAAATAAATAAATAAA
46392346 ATAAAATAAATAAAT--A
1 ATAAAATAAATAAATAAA
*
46392362 ATAAAATAAAATGAAACAAA
1 ATAAAAT-AAAT-AAATAAA
46392382 ATAA
1 ATAA
46392386 TATCTTCCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
16 8 0.24
17 13 0.39
18 7 0.21
20 5 0.15
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (18 bp):
ATAAAATAAATAAATAAA
Found at i:46392364 original size:21 final size:22
Alignment explanation
Indices: 46392332--46392387 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 22
46392322 ATTTAATATA
46392332 AAATCAAA-AATAAAATAAAAT-
1 AAAT-AAATAATAAAATAAAATG
46392353 AAATAAATAATAAAATAAAATG
1 AAATAAATAATAAAATAAAATG
*
46392375 AAACAAAATAATA
1 AAA-TAAATAATA
46392388 TCTTCCTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 3 0.10
21 17 0.55
22 3 0.10
23 8 0.26
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (22 bp):
AAATAAATAATAAAATAAAATG
Found at i:46393505 original size:39 final size:39
Alignment explanation
Indices: 46393451--46393526 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
46393441 CAGTGAAAGT
46393451 TTTTTGGCTTTCGGTAAGTGCTCATGATTCCCTTTCTAC
1 TTTTTGGCTTTCGGTAAGTGCTCATGATTCCCTTTCTAC
*
46393490 TTTTTGGCTTTCGGTAAGTGCTCATGATTCCTTTTCT
1 TTTTTGGCTTTCGGTAAGTGCTCATGATTCCCTTTCT
46393527 GCTTCTCTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.49
Consensus pattern (39 bp):
TTTTTGGCTTTCGGTAAGTGCTCATGATTCCCTTTCTAC
Found at i:46395781 original size:41 final size:41
Alignment explanation
Indices: 46395719--46395937 Score: 323
Period size: 41 Copynumber: 5.4 Consensus size: 41
46395709 GTTTTAGTAA
* *
46395719 AAAACGCCGCTAAATA-TAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
* * *
46395759 AAAACGCCACTAAAAACCAGAGCATTAGCGGCGCTTTTGCT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
*
46395800 AAAACGCCGCTAAAAACTAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
* * * * *
46395841 AAAATGCCGCTAAAAACAAGAACATTAACGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
*
46395882 AAAGCGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
46395923 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
46395938 GTCATATAAC
Statistics
Matches: 157, Mismatches: 21, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
40 14 0.09
41 143 0.91
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCAGCGCTTTTGGT
Found at i:46396116 original size:14 final size:14
Alignment explanation
Indices: 46396094--46396193 Score: 65
Period size: 14 Copynumber: 6.9 Consensus size: 14
46396084 TTAATTATCA
*
46396094 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
46396108 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
46396122 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
* * *
46396136 TTAAGATTTATGAGTT
1 TTATGGTTTA--AGGT
*
46396152 AATTATGGTTTAAGAT
1 --TTATGGTTTAAGGT
* *
46396168 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
46396182 TTAAGGTTTAAG
1 TTATGGTTTAAG
46396194 AGTTAACTAG
Statistics
Matches: 63, Mismatches: 19, Indels: 8
0.70 0.21 0.09
Matches are distributed among these distances:
14 50 0.79
16 5 0.08
18 8 0.13
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:46396129 original size:21 final size:21
Alignment explanation
Indices: 46396105--46396186 Score: 101
Period size: 21 Copynumber: 3.7 Consensus size: 21
46396095 TATAGTTTAA
*
46396105 GGTTTATGGTTTAAGATATAT
1 GGTTTAGGGTTTAAGATATAT
*
46396126 GGTTTAGGGTTTAAGATTTAT
1 GGTTTAGGGTTTAAGATATAT
*
46396147 GAGTTAATTATGGTTTAAGATATAT
1 G-G-T--TTAGGGTTTAAGATATAT
46396172 GGTTTAGGGTTTAAG
1 GGTTTAGGGTTTAAG
46396187 GTTTAAGAGT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
21 31 0.60
22 1 0.02
23 2 0.04
24 1 0.02
25 17 0.33
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (21 bp):
GGTTTAGGGTTTAAGATATAT
Found at i:46396161 original size:46 final size:46
Alignment explanation
Indices: 46396108--46396199 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
46396098 AGTTTAAGGT
*
46396108 TTATGGTTTAAGATATATGGTTTAGGGTTTAAGATTTATGAGTTAA
1 TTATGGTTTAAGATATATGGTTTAGGGTTTAAGATTTAAGAGTTAA
*
46396154 TTATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAA
1 TTATGGTTTAAGATATATGGTTTAGGGTTTAAGATTTAAGAGTTAA
46396200 CTAGTATTTG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.00, G:0.25, T:0.45
Consensus pattern (46 bp):
TTATGGTTTAAGATATATGGTTTAGGGTTTAAGATTTAAGAGTTAA
Found at i:46396285 original size:27 final size:28
Alignment explanation
Indices: 46396233--46396289 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
46396223 AATTATGGGT
* *
46396233 TTAGGGATTATGATTTAGGGTTTAAGGG
1 TTAGGGATTATGATTTAAGGTGTAAGGG
46396261 TTAGGG-TTA-GAGTTTAAGGTGTAAGGG
1 TTAGGGATTATGA-TTTAAGGTGTAAGGG
46396288 TT
1 TT
46396290 TGGGGTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 2 0.08
27 18 0.69
28 6 0.23
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.39
Consensus pattern (28 bp):
TTAGGGATTATGATTTAAGGTGTAAGGG
Found at i:46396356 original size:7 final size:7
Alignment explanation
Indices: 46396229--46396356 Score: 73
Period size: 7 Copynumber: 18.0 Consensus size: 7
46396219 GATGAATTAT
46396229 GGGTTTA
1 GGGTTTA
*
46396236 GGGATTA
1 GGGTTTA
* *
46396243 TGATTTA
1 GGGTTTA
46396250 GGGTTTAA
1 GGGTTT-A
46396258 GGG-TTA
1 GGGTTTA
46396264 GGG-TTA
1 GGGTTTA
*
46396270 GAGTTTA
1 GGGTTTA
* *
46396277 AGGTGTAA
1 GGGT-TTA
*
46396285 GGGTTTG
1 GGGTTTA
*
46396292 GGGTTAA
1 GGGTTTA
*
46396299 GGGTTAA
1 GGGTTTA
*
46396306 AGGTTTA
1 GGGTTTA
46396313 GGGTTTA
1 GGGTTTA
*
46396320 GTGTTTA
1 GGGTTTA
*
46396327 TGGG-ATA
1 -GGGTTTA
*
46396334 GGGGTTAA
1 -GGGTTTA
46396342 GAGGTTTA
1 G-GGTTTA
46396350 GGGTTTA
1 GGGTTTA
46396357 AATTAATTAG
Statistics
Matches: 90, Mismatches: 25, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
6 9 0.10
7 63 0.70
8 18 0.20
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.38
Consensus pattern (7 bp):
GGGTTTA
Found at i:46397805 original size:25 final size:25
Alignment explanation
Indices: 46397777--46397828 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
46397767 GCCATAACAG
46397777 TTTGCTACTTTCATTTTCTGTCTAT
1 TTTGCTACTTTCATTTTCTGTCTAT
46397802 TTTGCTACTTTCATTTTCTGTCTAT
1 TTTGCTACTTTCATTTTCTGTCTAT
46397827 TT
1 TT
46397829 ATCTGTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.12, C:0.19, G:0.08, T:0.62
Consensus pattern (25 bp):
TTTGCTACTTTCATTTTCTGTCTAT
Found at i:46398504 original size:2 final size:2
Alignment explanation
Indices: 46398497--46398529 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
46398487 CAATGCCTGC
46398497 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46398530 CAATTTGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46401175 original size:13 final size:13
Alignment explanation
Indices: 46401157--46401184 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
46401147 TATCCTTTGG
46401157 CTAGGTCTGTCAA
1 CTAGGTCTGTCAA
46401170 CTAGGTCTGTCAA
1 CTAGGTCTGTCAA
46401183 CT
1 CT
46401185 TCAAGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (13 bp):
CTAGGTCTGTCAA
Found at i:46401332 original size:19 final size:19
Alignment explanation
Indices: 46401309--46401355 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
46401299 ATTTAATCTA
*
46401309 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
46401327 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
46401347 ATTTTTATT
1 ATTTTTATT
46401356 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:46401743 original size:43 final size:43
Alignment explanation
Indices: 46401619--46401810 Score: 233
Period size: 43 Copynumber: 4.5 Consensus size: 43
46401609 TTTTTAAATT
*
46401619 TCACGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TCACGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGG
* * * ** **
46401662 TCACGGCTTTTAAC-GTGTTTGTGGGAAAAATGTTGCTAAAGG
1 TCACGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGG
46401704 TCACGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGG
1 TCACGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGG
* * * * *
46401747 CCATGACCTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGG
1 TCACGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGG
* * *
46401790 TCATGACGTTTAGCGGCGTTT
1 TCACGGCTTTTAGCGGCGTTT
46401811 TTTAAAAATA
Statistics
Matches: 128, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
42 36 0.28
43 92 0.72
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (43 bp):
TCACGGCTTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGG
Found at i:46405119 original size:47 final size:47
Alignment explanation
Indices: 46405051--46405219 Score: 204
Period size: 47 Copynumber: 3.6 Consensus size: 47
46405041 ACCCATAAGT
46405051 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * * *
46405098 GAACTCAGACTCGACTCAACGAGTTC-G-T-AC--GTTCACATCCATAAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCAC
*
46405143 AGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 -GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* *
46405191 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCAGACTCAACTCAACGAGCTCGGA
46405220 CGTTGGCATC
Statistics
Matches: 103, Mismatches: 10, Indels: 18
0.79 0.08 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
44 2 0.02
45 4 0.04
46 24 0.23
47 53 0.51
48 4 0.04
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.18, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:46405120 original size:93 final size:93
Alignment explanation
Indices: 46405004--46405269 Score: 415
Period size: 93 Copynumber: 2.9 Consensus size: 93
46404994 CGCCCATAAG
* * * *
46405004 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCACCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAACTGAACTCAGACTCAACTCA
46405069 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* * * * * *
46405097 CGAACTCAGACTCGACTCAACGAGTTCGTACGTTCACATCCATAACAGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAACTGAACTCAGACTCAACTCA
46405162 ACGAGCTCGGATGCCTAGTTACATCTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
46405190 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTGGCATCCATAATTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAACTGAACTCAGACTCAACTCA
*
46405255 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
46405270 CAAATATCCG
Statistics
Matches: 154, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.29, C:0.31, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCATCCATAACTGAACTCAGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:46405265 original size:46 final size:44
Alignment explanation
Indices: 46404997--46405265 Score: 213
Period size: 46 Copynumber: 5.8 Consensus size: 44
46404987 TGTAACCCGC
* * * *
46404997 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAC
1 CCATAA-CGAACTCAGACTCAACTCAACGAGCTCGGACGTT-ACAT
*
46405043 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAA-CGAACTCAGACTCAACTCAACGAGCTCGGA---C--GTTACAT
* * * *
46405093 -C-TCACGAACTCAGACTCGACTCAACGAGTTCGTACGTTCACAT
1 CCATAACGAACTCAGACTCAACTCAACGAGCTCGGACGTT-ACAT
*
46405136 CCATAACAGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAC-GAACTCAGACTCAACTCAACGAGCTCGGA---C--GTTACAT
* * * *
46405186 -C-TCACGAACTCGGACTCAACTCAACGAGTTCGGACGTTGGCAT
1 CCATAACGAACTCAGACTCAACTCAACGAGCTCGGACGTT-ACAT
* *
46405229 CCATAATTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAA-CGAACTCAGACTCAACTCAACGAGCTCGGA
46405266 TGCCCAAATA
Statistics
Matches: 184, Mismatches: 21, Indels: 36
0.76 0.09 0.15
Matches are distributed among these distances:
42 6 0.03
43 7 0.04
44 4 0.02
45 5 0.03
46 87 0.47
47 54 0.29
48 5 0.03
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (44 bp):
CCATAACGAACTCAGACTCAACTCAACGAGCTCGGACGTTACAT
Found at i:46407699 original size:30 final size:30
Alignment explanation
Indices: 46407655--46407723 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 30
46407645 TAAAGATAAC
* *
46407655 AAGAAAACC-GAATAAAGAAATTCAAGATA
1 AAGAAACCCAGAATAAAGAAATTCAAAATA
*
46407684 GAGAAACCCAGAATAAAGAAATTCAAAATA
1 AAGAAACCCAGAATAAAGAAATTCAAAATA
46407714 AAGAAACCCA
1 AAGAAACCCA
46407724 AGATACGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
29 7 0.20
30 28 0.80
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.12
Consensus pattern (30 bp):
AAGAAACCCAGAATAAAGAAATTCAAAATA
Found at i:46407703 original size:15 final size:15
Alignment explanation
Indices: 46407655--46407723 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 15
46407645 TAAAGATAAC
*
46407655 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
**
46407669 AAGAAATTCA-AGATA
1 AAGAAACCCAGA-ATA
*
46407684 GAGAAACCCAGAATA
1 AAGAAACCCAGAATA
** *
46407699 AAGAAATTCAAAATA
1 AAGAAACCCAGAATA
46407714 AAGAAACCCA
1 AAGAAACCCA
46407724 AGATACGATA
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
14 8 0.20
15 32 0.78
16 1 0.02
ACGTcount: A:0.61, C:0.14, G:0.13, T:0.12
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:46410148 original size:40 final size:40
Alignment explanation
Indices: 46410083--46410326 Score: 294
Period size: 40 Copynumber: 6.1 Consensus size: 40
46410073 CGGAATACAA
* ** * * *
46410083 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
46410123 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
46410163 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
46410203 CCGAATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
46410243 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
46410283 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
46410323 CCGG
1 CCGG
46410327 GTATCATTCA
Statistics
Matches: 180, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
40 179 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:46410481 original size:64 final size:64
Alignment explanation
Indices: 46410413--46410605 Score: 141
Period size: 64 Copynumber: 3.1 Consensus size: 64
46410403 GAACACAAAC
46410413 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
46410477 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
46410534 AC
63 AT
*
46410536 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGTGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
46410600 ATATCA
1 ATATCA
46410606 ATAATCATTA
Statistics
Matches: 83, Mismatches: 35, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 23 0.28
60 7 0.08
61 7 0.08
62 7 0.08
63 7 0.08
64 30 0.36
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:46410514 original size:123 final size:123
Alignment explanation
Indices: 46410295--46410633 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
46410285 GGATATAATT
* * * * * * *
46410295 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
46410360 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
46410418 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
46410483 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
46410541 ACTAGCATAATTGCCTTCGGGACTTAGCCCGTGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
46410606 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
46410634 CACATAATTC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:46414074 original size:23 final size:23
Alignment explanation
Indices: 46414046--46414089 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
46414036 GTGATCTCGG
46414046 ACTCAACTCAACGAGCTCGGATA
1 ACTCAACTCAACGAGCTCGGATA
*
46414069 ACTCAACTCAACGAGTTCGGA
1 ACTCAACTCAACGAGCTCGGA
46414090 CGTTCGAATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.34, C:0.30, G:0.18, T:0.18
Consensus pattern (23 bp):
ACTCAACTCAACGAGCTCGGATA
Found at i:46414114 original size:69 final size:69
Alignment explanation
Indices: 46414000--46414136 Score: 220
Period size: 69 Copynumber: 2.0 Consensus size: 69
46413990 ACAAACTCAG
* * *
46414000 ACTCAACTCAACGAGTTCAGACGTTCGCATACGTAAGTGATCTCGGACTCAACTCAACGAGCTCG
1 ACTCAACTCAACGAGTTCAGACGTTCGAATACATAAGTGAACTCGGACTCAACTCAACGAGCTCG
46414065 GATA
66 GATA
* * *
46414069 ACTCAACTCAACGAGTTCGGACGTTCGAATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 ACTCAACTCAACGAGTTCAGACGTTCGAATACATAAGTGAACTCGGACTCAACTCAACGAGCTCG
46414134 GAT
66 GAT
46414137 GCCCAAATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (69 bp):
ACTCAACTCAACGAGTTCAGACGTTCGAATACATAAGTGAACTCGGACTCAACTCAACGAGCTCG
GATA
Found at i:46416261 original size:169 final size:169
Alignment explanation
Indices: 46415961--46416285 Score: 431
Period size: 169 Copynumber: 1.9 Consensus size: 169
46415951 AAGAACTAAT
* * * * *
46415961 ATTTATAGAAGTATTTTTAAATGAACAAGTTAGCTCAATTATATACAGGTAAACATGTTAATTAA
1 ATTTATAGAAGTATTGTTAAATGAACAAATTAGCTCAATTATACACAGCTAAACATGTTAACTAA
* * * *
46416026 GGTAGTGTAGACGAAAAACACCCTCAGCTTATAATTGGGCCATGTCGGACGAATGTCGCAACACC
66 GGTAGTATAGACGAAAAACACCCTCAGCTGATAATTAGGCCATGTCAGACGAATGTCGCAACACC
*
46416091 CTATAGTTTTGTGTCACGACATTGAATCTAAGAGCAAAA
131 CTATAGTTTTGTGTCACAACATTGAATCTAAGAGCAAAA
*
46416130 ATTTATA-AGAGTATTGTTAAATGACCAAATTAGCTCAATTATACACTA-CTAAACATGTTAACT
1 ATTTATAGA-AGTATTGTTAAATGAACAAATTAGCTCAATTATACAC-AGCTAAACATGTTAACT
* * * * * * * *
46416193 AAGGCT-GTATGGATGAAAAACACCCTCAGCTGATAATTAGGCCTTTTTAGACGAGTTTCGCGAC
64 AAGG-TAGTATAGACGAAAAACACCCTCAGCTGATAATTAGGCCATGTCAGACGAATGTCGCAAC
46416257 ACCCTATAGTTTTGTGTCACAACATTGAA
128 ACCCTATAGTTTTGTGTCACAACATTGAA
46416286 CATCAAATAC
Statistics
Matches: 134, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
168 1 0.01
169 131 0.98
170 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (169 bp):
ATTTATAGAAGTATTGTTAAATGAACAAATTAGCTCAATTATACACAGCTAAACATGTTAACTAA
GGTAGTATAGACGAAAAACACCCTCAGCTGATAATTAGGCCATGTCAGACGAATGTCGCAACACC
CTATAGTTTTGTGTCACAACATTGAATCTAAGAGCAAAA
Found at i:46425141 original size:20 final size:19
Alignment explanation
Indices: 46425089--46425142 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
46425079 TTTAAATTTT
* *
46425089 AAAAATTCAAAATAATATA
1 AAAAATTTAAAAAAATATA
* *
46425108 AAAATTTTGAAAAAGATATA
1 AAAAATTT-AAAAAAATATA
46425128 AAAAATTTAAAAAAA
1 AAAAATTTAAAAAAA
46425143 AAGTATTTAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
19 12 0.43
20 16 0.57
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.26
Consensus pattern (19 bp):
AAAAATTTAAAAAAATATA
Found at i:46425257 original size:10 final size:10
Alignment explanation
Indices: 46425244--46425269 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
46425234 ATTTTAAATT
46425244 TTTTTTACAA
1 TTTTTTACAA
46425254 TTTTTTACAA
1 TTTTTTACAA
46425264 TTTTTT
1 TTTTTT
46425270 GTAATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTTTACAA
Found at i:46425380 original size:21 final size:21
Alignment explanation
Indices: 46425356--46425400 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
46425346 TTTATAGATC
* *
46425356 ATATAAATTTTTAATTTTTAT
1 ATATAAATTTTTAATGTATAT
**
46425377 ATATTTATTTTTAATGTATAT
1 ATATAAATTTTTAATGTATAT
46425398 ATA
1 ATA
46425401 CATTTATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
ATATAAATTTTTAATGTATAT
Found at i:46425405 original size:23 final size:21
Alignment explanation
Indices: 46425362--46425408 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
46425352 GATCATATAA
* *
46425362 ATTTTTAATTTTTATATATTT
1 ATTTTTAATTTATATACATTT
46425383 ATTTTTAATGTATATATACATTT
1 ATTTTTAAT-T-TATATACATTT
46425406 ATT
1 ATT
46425409 ATAAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 9 0.41
22 1 0.05
23 12 0.55
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (21 bp):
ATTTTTAATTTATATACATTT
Found at i:46425809 original size:38 final size:38
Alignment explanation
Indices: 46425733--46425810 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
46425723 TTTGTCTTTA
**
46425733 ACAGAATTTTGAACATGTAAAAATTAGGAGAACTTTTT
1 ACAGAATTTTGAACATGTAAAAATTAGGAGAAAATTTT
*
46425771 ACAGAATTTTGAACATGTACAAATTAGGAGAAAATTTT
1 ACAGAATTTTGAACATGTAAAAATTAGGAGAAAATTTT
46425809 AC
1 AC
46425811 TTTATTATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (38 bp):
ACAGAATTTTGAACATGTAAAAATTAGGAGAAAATTTT
Found at i:46429265 original size:28 final size:29
Alignment explanation
Indices: 46429225--46429323 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 29
46429215 GTAATAAGCC
*
46429225 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
46429253 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
46429281 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
46429310 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46429324 CAATTTGTGA
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
27 2 0.03
28 36 0.61
29 18 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:46436603 original size:28 final size:29
Alignment explanation
Indices: 46436563--46436659 Score: 101
Period size: 28 Copynumber: 3.4 Consensus size: 29
46436553 GTAATAAGCC
*
46436563 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
46436591 CGCACACTTAGTG-TTATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * * *
46436619 TGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
46436648 CGCACACTTAGT
1 CGCACACTTAGT
46436660 CCCAATTTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
27 3 0.05
28 34 0.60
29 17 0.30
30 3 0.05
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:46438393 original size:27 final size:28
Alignment explanation
Indices: 46438363--46438432 Score: 97
Period size: 27 Copynumber: 2.5 Consensus size: 28
46438353 ATAGTGAATC
*
46438363 CGCACACTTAGTGCTATAAAATC-AGCT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
46438390 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATCAAACT
46438418 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46438433 GTACAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:46438504 original size:42 final size:42
Alignment explanation
Indices: 46438440--46438546 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
46438430 GCTGTACAAT
* *
46438440 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
46438482 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
46438524 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
46438547 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:46447255 original size:39 final size:39
Alignment explanation
Indices: 46447208--46447390 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
46447198 AATGTTCGAG
46447208 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
46447247 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
46447286 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * ** *
46447325 TGGTATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
46447365 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
46447391 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 87 0.70
40 37 0.30
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:46448853 original size:27 final size:28
Alignment explanation
Indices: 46448823--46448891 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 28
46448813 TAGTGAATCT
*
46448823 GCACACTTAGTGCTATAAAATC-AGCTC
1 GCACACTTAGTGCTATAAAATCAAACTC
* * *
46448850 GCACACATAGTGCTATATAATCAAATTC
1 GCACACTTAGTGCTATAAAATCAAACTC
46448878 GCACACTTAGTGCT
1 GCACACTTAGTGCT
46448892 GTACAATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (28 bp):
GCACACTTAGTGCTATAAAATCAAACTC
Found at i:46448963 original size:42 final size:42
Alignment explanation
Indices: 46448899--46449005 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
46448889 GCTGTACAAT
* *
46448899 TTTAAACCCGCACACGTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
46448941 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
46448983 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
46449006 GAGACCAATA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:46458006 original size:5 final size:6
Alignment explanation
Indices: 46457993--46458051 Score: 84
Period size: 6 Copynumber: 10.0 Consensus size: 6
46457983 AATAAAATTG
* * *
46457993 AAATGA AAATAA AAATCA AAAGAA AAATAA AAATAA AAATAA AAAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
46458040 AAATAA AAATAA
1 AAATAA AAATAA
46458052 GAGTAAATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 5 0.11
6 42 0.89
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:46458044 original size:17 final size:17
Alignment explanation
Indices: 46457973--46458069 Score: 81
Period size: 18 Copynumber: 5.6 Consensus size: 17
46457963 TATGTCTTTC
*
46457973 AAAATAATATAATAAAATT
1 AAAATAA-A-AATAAAATA
* * *
46457992 GAAATGAAAATAAAAATC
1 AAAATAAAAAT-AAAATA
*
46458010 AAAAGAAAAATAAAAATA
1 AAAATAAAAAT-AAAATA
46458028 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAATA
* *
46458045 AAAATAAGAGT-AAATA
1 AAAATAAAAATAAAATA
46458061 AAAA-AAAAA
1 AAAATAAAAA
46458070 GAGGATTCAA
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
15 3 0.05
16 9 0.14
17 18 0.28
18 30 0.46
19 5 0.08
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.18
Consensus pattern (17 bp):
AAAATAAAAATAAAATA
Found at i:46458065 original size:23 final size:22
Alignment explanation
Indices: 46457993--46458069 Score: 84
Period size: 23 Copynumber: 3.4 Consensus size: 22
46457983 AATAAAATTG
*
46457993 AAATGAAAATAAAAATCAAAAGAA
1 AAATAAAAATAAAAAT-AAAA-AA
46458017 AAATAAAAATAAAAATAAAAATA
1 AAATAAAAATAAAAATAAAAA-A
* * *
46458040 AAATAAAAATAAGAGTAAATAA
1 AAATAAAAATAAAAATAAAAAA
46458062 AAA-AAAAA
1 AAATAAAAA
46458070 GAGGATTCAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
21 5 0.10
22 5 0.10
23 23 0.48
24 15 0.31
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14
Consensus pattern (22 bp):
AAATAAAAATAAAAATAAAAAA
Found at i:46463434 original size:13 final size:13
Alignment explanation
Indices: 46463412--46463444 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
46463402 AAGGGTTTGT
46463412 TTAT-TAAACTAA
1 TTATCTAAACTAA
46463424 TTATCTAAACTAA
1 TTATCTAAACTAA
*
46463437 TTAACTAA
1 TTATCTAA
46463445 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:46469574 original size:46 final size:47
Alignment explanation
Indices: 46469378--46469647 Score: 214
Period size: 46 Copynumber: 5.7 Consensus size: 47
46469368 TATGATGTCG
* * * * *
46469378 ATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAAT-TGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC--TT-ACATCTCAAGCCA
* * * **
46469427 ACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCTC-AAGCCA
* * * *
46469477 ATGCCATGTCCCAGATATGGTCTTACACTGAC--ACATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAGCCA
* *
46469523 ATG-CATGTCCCAGAGAT-GTCTTACACTGGCTTACATCACAAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAA-GCCA
* * *
46469569 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTCT-CATCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCAA-GCCA
*
46469615 ATGCCATGTCCCCGACATGGTCTTACACTGGCT
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCT
46469648 CTGATAATGT
Statistics
Matches: 181, Mismatches: 31, Indels: 19
0.78 0.13 0.08
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 62 0.34
47 14 0.08
48 17 0.09
49 30 0.17
50 32 0.18
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGCCA
Found at i:46469606 original size:92 final size:94
Alignment explanation
Indices: 46469378--46469647 Score: 257
Period size: 99 Copynumber: 2.8 Consensus size: 94
46469368 TATGATGTCG
* * ** ** *
46469378 ATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATTGATGCCGACGCCATGTCCCAGAC
1 ATGCCATGTCCCAAACATGGTCTTACACTGAC-A--CATCTCAATGCCGATGCCATGTCCCAGAC
* *
46469443 ATGGTCTTACACTAGCTCTCACAT-ATC-TGTGCCA
63 ATGGTCTTACACTGGCT-T-ACATCA-CAAG-GCCA
* * * *
46469477 ATGCCATGTCCCAGATATGGTCTTACACTGACACATCTC-GTAGCCGATG-CATGTCCCAGAGAT
1 ATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCAAT-GCCGATGCCATGTCCCAGACAT
46469540 -GTCTTACACTGGCTTACATCACAAGGCCA
65 GGTCTTACACTGGCTTACATCACAAGGCCA
* * *
46469569 ATG-CATGTCCCAAACAT-GTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCCGACA
1 ATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCTCAATGCCGATGCCATGTCCCAGACA
46469632 TGGTCTTACACTGGCT
64 TGGTCTTACACTGGCT
46469648 CTGATAATGT
Statistics
Matches: 146, Mismatches: 17, Indels: 21
0.79 0.09 0.11
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 26 0.18
93 16 0.11
94 27 0.18
95 14 0.10
96 8 0.05
98 1 0.01
99 31 0.21
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (94 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCAATGCCGATGCCATGTCCCAGACATG
GTCTTACACTGGCTTACATCACAAGGCCA
Found at i:46469667 original size:94 final size:93
Alignment explanation
Indices: 46469421--46469697 Score: 276
Period size: 94 Copynumber: 3.0 Consensus size: 93
46469411 ATTGAAATTG
* * * *
46469421 ATGCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCAATGCCATGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATATG-GCCAATG-CATGT
* *
46469486 CCCAGATATGGTCTTACACT-G-ACACATCTC
63 CCCAAACAT-GTCTTACACTAGCACACATCTC
* * * * *
46469516 GTAGCCGATG-CATGTCCCAGAGAT-GTCTTACACTGGCT-TACATCACAAGGCCAATGCATGTC
1 AT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATATGGCCAATGCATGTC
* *
46469578 CCAAACATGTCTTACACTAGCTCTCATCTC
64 CCAAACATGTCTTACACTAGCACACATCTC
* * * * * *
46469608 AATGCCGATGCCATGTCCCCGACATGGTCTTACACTGGCTCTGATAATGTGGTCGATGCACGTCC
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCAATGCATGTCC
*
46469673 CAAACATGTCTTACATTAGCACACA
65 CAAACATGTCTTACACTAGCACACA
46469698 AATAACTCGA
Statistics
Matches: 147, Mismatches: 27, Indels: 17
0.77 0.14 0.09
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 21 0.14
93 16 0.11
94 66 0.45
95 15 0.10
96 6 0.04
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (93 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCAATGCATGTCCC
AAACATGTCTTACACTAGCACACATCTC
Found at i:46469673 original size:140 final size:140
Alignment explanation
Indices: 46469431--46469687 Score: 322
Period size: 140 Copynumber: 1.8 Consensus size: 140
46469421 ATGCCGACGC
* ** *
46469431 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGTGCCAATGCCATGTCCCAGATATG
1 CATGTCCCAAACATGGTCTTACACTAGCTCT-ACATATCAATGCCAATGCCATGTCCCAGACATG
* * * *
46469496 GTCTTACACTGACACATCTCGTAGCCGATGCATGTCCCAGAGATGTCTTACACTGGCTTACATCA
65 GTCTTACACTGACACATATCGTAGCCGATGCACGTCCCAAACATGTCTTACACTGGCTTACATCA
46469561 CAAGGCCAATG
130 CAAGGCCAATG
* * *
46469572 CATGTCCCAAACAT-GTCTTACACTAGCTCT-CATCTCAATGCCGATGCCATGTCCCCGACATGG
1 CATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCAATGCCATGTCCCAGACATGG
* * * *
46469635 TCTTACACTGGCTCTGATAAT-GTGGTCGATGCACGTCCCAAACATGTCTTACA
66 TCTTACACTGACAC--AT-ATCGTAGCCGATGCACGTCCCAAACATGTCTTACA
46469688 TTAGCACACA
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
138 39 0.40
140 45 0.46
141 14 0.14
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (140 bp):
CATGTCCCAAACATGGTCTTACACTAGCTCTACATATCAATGCCAATGCCATGTCCCAGACATGG
TCTTACACTGACACATATCGTAGCCGATGCACGTCCCAAACATGTCTTACACTGGCTTACATCAC
AAGGCCAATG
Found at i:46482653 original size:47 final size:46
Alignment explanation
Indices: 46482531--46482660 Score: 140
Period size: 46 Copynumber: 2.8 Consensus size: 46
46482521 ATGTAACCGA
* *
46482531 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTTACAT
* * *
46482577 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTATAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATG--T--TTACAT
* *
46482627 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
46482661 ACTCAAATAT
Statistics
Matches: 73, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
46 37 0.51
47 27 0.37
48 3 0.04
49 1 0.01
50 5 0.07
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGTTTACAT
Found at i:46496923 original size:40 final size:40
Alignment explanation
Indices: 46496816--46497051 Score: 149
Period size: 40 Copynumber: 6.2 Consensus size: 40
46496806 TCTTCGGAAT
* ** *
46496816 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGG--
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *** *
46496853 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
46496893 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
46496933 TTAGCCCGGATAT--C-ACTAGCATAAATTCCTTC-GGAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * * *
46496969 ATAG--C---TATATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * * *
46497003 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
46497043 TTAGCCCGG
1 TTAGCCCGG
46497052 GTATCATTCA
Statistics
Matches: 161, Mismatches: 26, Indels: 21
0.77 0.12 0.10
Matches are distributed among these distances:
31 3 0.02
33 18 0.11
34 8 0.05
36 7 0.04
37 17 0.11
38 26 0.16
39 4 0.02
40 78 0.48
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:46505221 original size:24 final size:24
Alignment explanation
Indices: 46505189--46505441 Score: 456
Period size: 24 Copynumber: 10.6 Consensus size: 24
46505179 TATCTCAAAT
*
46505189 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
46505213 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505237 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505261 G--CTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505283 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505307 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505331 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505355 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46505379 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
46505403 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
46505427 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
46505442 ACATAATAAG
Statistics
Matches: 223, Mismatches: 4, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
22 22 0.10
24 201 0.90
ACGTcount: A:0.20, C:0.17, G:0.26, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:46512787 original size:49 final size:49
Alignment explanation
Indices: 46512727--46513088 Score: 616
Period size: 49 Copynumber: 7.4 Consensus size: 49
46512717 TACATATATG
* * * * * *
46512727 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGGATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
* * *
46512776 TGTGATGAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
46512825 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
46512874 TGTGATGAGGCCTAATGGCTGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
46512923 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
46512972 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
46513021 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
*
46513070 TGTGATAAGGCCTAATGGC
1 TGTGATGAGGCCTAATGGC
46513089 TAATGTAAAA
Statistics
Matches: 304, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 304 1.00
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (49 bp):
TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
Found at i:46513240 original size:37 final size:37
Alignment explanation
Indices: 46513190--46513274 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
46513180 GGAATATGTT
*
46513190 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
46513227 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
46513264 CCGGGTAAGAC
1 CCGGGTAAGAC
46513275 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:46522221 original size:24 final size:24
Alignment explanation
Indices: 46522189--46522236 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
46522179 GATGAGATAC
46522189 CGACCTTTTCATTG-TGATCCTTTT
1 CGACCTTTTCATTGAT-ATCCTTTT
46522213 CGACCTTTTCATTGATATCCTTTT
1 CGACCTTTTCATTGATATCCTTTT
46522237 TGGATAGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.15, C:0.25, G:0.10, T:0.50
Consensus pattern (24 bp):
CGACCTTTTCATTGATATCCTTTT
Found at i:46522250 original size:40 final size:40
Alignment explanation
Indices: 46522205--46522309 Score: 156
Period size: 41 Copynumber: 2.6 Consensus size: 40
46522195 TTTCATTGTG
* ** *
46522205 ATCCTTTTCGACCTTTTCATTGATATCCTTTTTGGATAGC
1 ATCCTTTTCAACCTTTTCATTGATATCCTTTCCGGATAAC
46522245 ATCCTTTTCAACCTTTTCATTTGATATCCTTTCCGGATAAC
1 ATCCTTTTCAACCTTTTCA-TTGATATCCTTTCCGGATAAC
*
46522286 ATCCTTTTCAACTTTTTCATTGAT
1 ATCCTTTTCAACCTTTTCATTGAT
46522310 TTGGAAATAC
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 23 0.39
41 36 0.61
ACGTcount: A:0.20, C:0.24, G:0.09, T:0.48
Consensus pattern (40 bp):
ATCCTTTTCAACCTTTTCATTGATATCCTTTCCGGATAAC
Done.