Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 159 of 328
Found at i:46524875 original size:31 final size:29
Alignment explanation
Indices: 46524814--46524875 Score: 70
Period size: 31 Copynumber: 2.1 Consensus size: 29
46524804 TGAAAATCGA
*
46524814 TTTACGAACCTAGGGTTAAAATCATAATT
1 TTTACGAACCTAGGGGTAAAATCATAATT
* * *
46524843 TTTACGAAAGCCTAGGGGTGAAATGATCATT
1 TTTACG-AA-CCTAGGGGTAAAATCATAATT
46524874 TT
1 TT
46524876 GCCAAAATGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 6 0.22
30 2 0.07
31 19 0.70
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (29 bp):
TTTACGAACCTAGGGGTAAAATCATAATT
Found at i:46528209 original size:48 final size:48
Alignment explanation
Indices: 46528140--46529192 Score: 1736
Period size: 48 Copynumber: 22.0 Consensus size: 48
46528130 AGATAAATAT
* *
46528140 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
46528188 ATATATGTGTGATATGTATATGTGGT-AAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46528235 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
46528283 ATATACATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
46528331 ATATGTATGAGGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
46528379 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46528427 ATATATA--AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
46528473 ATATATGTGTGATATGTATATGTGGTAAAGCTGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46528521 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46528569 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
46528617 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
46528665 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46528713 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * *
46528761 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46528809 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46528857 ATATATATAAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* * * *
46528905 ATATATGTGTGATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46528953 ATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46529001 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
* *
46529049 ATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
*
46529097 ATATATATGAGATATGTATATGTCGTAAAGCCGAATGG-TGAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCT-AATGTGAA
* *
46529145 ATATGTATGAGATATGAATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46529193 TGTTGTAACA
Statistics
Matches: 938, Mismatches: 62, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
46 44 0.05
47 44 0.05
48 849 0.91
49 1 0.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.32
Consensus pattern (48 bp):
ATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
Found at i:46530507 original size:40 final size:40
Alignment explanation
Indices: 46530463--46530653 Score: 330
Period size: 40 Copynumber: 4.8 Consensus size: 40
46530453 GAGAATTGAG
46530463 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
46530503 AGTGATGTATCCGGACTAAGTT-CGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
46530542 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
46530582 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
46530622 AGTGATATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
46530654 ATCATGCTGG
Statistics
Matches: 146, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 39 0.27
40 107 0.73
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:46530594 original size:79 final size:80
Alignment explanation
Indices: 46530463--46530653 Score: 330
Period size: 79 Copynumber: 2.4 Consensus size: 80
46530453 GAGAATTGAG
*
46530463 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT-TCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
46530527 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
46530542 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
46530607 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * * *
46530622 AGTGATATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
46530654 ATCATGCTGG
Statistics
Matches: 106, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
79 61 0.58
80 45 0.42
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:46534177 original size:48 final size:48
Alignment explanation
Indices: 46534118--46535163 Score: 1732
Period size: 48 Copynumber: 21.8 Consensus size: 48
46534108 ATATGTGTGT
* *
46534118 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* * *
46534166 GATATGTATATGTGGTAAGGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534214 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATACATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
*
46534262 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* * *
46534310 GGTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534358 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATACATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534406 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534454 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
*
46534502 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534550 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534598 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
46534646 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534694 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534742 GATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
*
46534790 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534838 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* * *
46534886 GATATGTAGATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
46534934 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46534982 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGT
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
*
46535030 GATATGTAGATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* * *
46535078 GATATGTATATGTCGTAAAGCCGAATGGCGAATGTGAAATATGTATGA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
* *
46535126 GATATGAATATGTGGGAAAGCCGAATGGCTAATGTGAA
1 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
46535164 TGTTGTAACA
Statistics
Matches: 927, Mismatches: 71, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 927 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGA
Found at i:46535247 original size:37 final size:37
Alignment explanation
Indices: 46535197--46535293 Score: 185
Period size: 37 Copynumber: 2.6 Consensus size: 37
46535187 ACATGAAACT
*
46535197 TGGAGATTATGTCCGGGTAAGACCTGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
46535234 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
46535271 TGGAGATTATGTCCGGGTAAGAC
1 TGGAGATTATGTCCGGGTAAGAC
46535294 TTCGTAATAA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:46540469 original size:40 final size:40
Alignment explanation
Indices: 46540424--46540645 Score: 277
Period size: 40 Copynumber: 5.5 Consensus size: 40
46540414 TTGCACAAGG
* * *
46540424 CTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
46540464 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
46540504 CTTCGGGT-TTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
46540543 CTTCGGGTCTTAGCTCGGATATAG-CAACTCGCACGAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
46540583 CTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAATGC
*
46540624 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
46540646 CATTCGAATA
Statistics
Matches: 155, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 39 0.25
40 87 0.56
41 29 0.19
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:46540534 original size:79 final size:80
Alignment explanation
Indices: 46540387--46540645 Score: 294
Period size: 79 Copynumber: 3.3 Consensus size: 80
46540377 CTCAAGTAAT
* * * * * * *
46540387 CTTCGGGATTTAG-CCGGATATAACTACTTGCAC-AA-GGCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
46540449 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* *
46540464 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGT-TTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
46540527 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * * *
46540543 CTTCGGGTCTTAGCTCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
46540608 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
46540624 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
46540646 CATTCGAATA
Statistics
Matches: 152, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
77 12 0.08
78 16 0.11
79 69 0.45
80 23 0.15
81 32 0.21
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:46540606 original size:119 final size:119
Alignment explanation
Indices: 46540387--46540645 Score: 305
Period size: 119 Copynumber: 2.2 Consensus size: 119
46540377 CTCAAGTAAT
* * * *
46540387 CTTCGGGATTTAG-CCGGATATAACTACTTGCACAAGGCTTCGGGTCTTAGCCCGGATGTGGTCA
1 CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGCCTTCGGGTCTTAGCCCGGATATAGTCA
* * *
46540451 CTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGC
66 CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
* *
46540504 CTTCGGG-TTTAGCCCGGATATAA-TCGCTAGCACAAATGCCTTCGGGTCTTAGCTCGGATATAG
1 CTTCGGGATTTAGCCCGGATATAACT-ACTAGCAC-AA-GCCTTCGGGTCTTAGCCCGGATATAG
* * * *
46540567 -CAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCACAAAAGC
63 TC-ACTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCACCTAGCACAAAAGC
*
46540624 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGATTTAGCCCGGATAT
46540646 CATTCGAATA
Statistics
Matches: 120, Mismatches: 14, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
116 6 0.05
117 23 0.19
118 6 0.05
119 53 0.44
120 19 0.16
121 13 0.11
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (119 bp):
CTTCGGGATTTAGCCCGGATATAACTACTAGCACAAGCCTTCGGGTCTTAGCCCGGATATAGTCA
CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACCTAGCACAAAAGC
Found at i:46547790 original size:40 final size:40
Alignment explanation
Indices: 46547701--46547928 Score: 248
Period size: 39 Copynumber: 5.7 Consensus size: 40
46547691 TAACTACTTG
* * * * *
46547701 CAAAGGCCTTCGGGTCTTAGCCCGGATGTGGTC-ATAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA
*
46547740 TAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA
* *
46547780 CAAATGCCTTCGGG-TTTAGCCCGGATATAATCGCTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA
* * * *
46547819 CAAATGCCTTCGGGTCTTAGCCTGGATATAG-CAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTC-GCTAGCA
* * * *
46547859 CGAATGCCTTC-GGATCTTAGTCCGGTTATAGTCACCTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTC-GCTAGCA
*
46547900 CAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CAAATGCCTTCGGGACTTAGCCCGGATAT
46547929 CATTCGAATA
Statistics
Matches: 158, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 68 0.43
40 59 0.37
41 28 0.18
42 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCA
Found at i:46547818 original size:79 final size:79
Alignment explanation
Indices: 46547671--46547928 Score: 274
Period size: 79 Copynumber: 3.3 Consensus size: 79
46547661 CTCAAGTAAT
* * * * * * *
46547671 CTTCGGGATTTAG-CCGGATATAACTACTTG--CAAAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
* *
46547733 CATAGCATAAATGC
66 CCTAGCACAAATGC
* *
46547747 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGT-TTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
46547810 TCGCTAGCACAAATGC
65 TC-CTAGCACAAATGC
* * * * * * *
46547826 CTTCGGGTCTTAGCCTGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
46547891 CACCTAGCACAAAAGC
66 --CCTAGCACAAATGC
46547907 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
46547929 CATTCGAATA
Statistics
Matches: 151, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
76 12 0.08
77 12 0.08
78 16 0.11
79 65 0.43
80 13 0.09
81 32 0.21
82 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CCTAGCACAAATGC
Found at i:46554680 original size:10 final size:10
Alignment explanation
Indices: 46554665--46554691 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
46554655 GGAGATATCA
46554665 TCATCAATCG
1 TCATCAATCG
46554675 TCATCAATCG
1 TCATCAATCG
46554685 TCATCAA
1 TCATCAA
46554692 CCAGGTGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (10 bp):
TCATCAATCG
Found at i:46555216 original size:27 final size:26
Alignment explanation
Indices: 46555172--46555223 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46555162 CTCGCTGCAA
*
46555172 TCTGGTGGCCTCGCCACACATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
46555199 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
46555224 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.29, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:46556862 original size:40 final size:40
Alignment explanation
Indices: 46556794--46556971 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
46556784 CCAAGGCCAA
* * * *
46556794 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
46556833 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
46556873 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * *
46556913 CGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-TGCCTT
*
46556953 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
46556972 CATTCAATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 9 0.08
40 99 0.87
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:46564894 original size:40 final size:40
Alignment explanation
Indices: 46564835--46565003 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
46564825 CGGGACTTTA
* * *
46564835 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
46564875 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
46564915 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
46564955 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
46564995 CCCGGATAT
1 CCCGGATAT
46565004 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:46573696 original size:27 final size:26
Alignment explanation
Indices: 46573665--46573716 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
46573655 CACGTTGCAA
*
46573665 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
46573692 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
46573717 GCAGCTTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:46577956 original size:12 final size:12
Alignment explanation
Indices: 46577939--46577974 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
46577929 ATTCATTTGA
46577939 CATTCATGCATT
1 CATTCATGCATT
46577951 CATTCATGCATT
1 CATTCATGCATT
*
46577963 CATTCATACATT
1 CATTCATGCATT
46577975 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:46583277 original size:70 final size:69
Alignment explanation
Indices: 46583158--46583611 Score: 426
Period size: 70 Copynumber: 6.7 Consensus size: 69
46583148 GAGTTAAGCC
*
46583158 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
46583222 TGAGGTA
63 TGAGGTA
* * ** * *
46583229 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
46583294 AGGTA
65 AGGTA
* *
46583299 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
46583364 GAGGTA
64 GAGGTA
* * * ** * * *
46583370 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
46583426 ---A
66 GGTA
*** ** *
46583427 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
46583488 GGTA
66 GGTA
* *
46583492 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGG-ACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
46583555 TGAGGTA
63 TGAGGTA
*
46583562 TTTTCAATTTCTGTTTTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGA
1 TTTTCAATTTTTGTTTT--A-AATCAACTCATATTGCGAGAGGTGAGTTGA
46583612 ACCTTTTAAT
Statistics
Matches: 313, Mismatches: 44, Indels: 54
0.76 0.11 0.13
Matches are distributed among these distances:
53 31 0.10
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
68 6 0.02
69 42 0.13
70 99 0.32
71 70 0.22
72 43 0.14
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:46583352 original size:71 final size:69
Alignment explanation
Indices: 46583158--46583421 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
46583148 GAGTTAAGCC
* *
46583158 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
46583223 GAGGTAT
63 GAGGTAT
* * ** * *
46583230 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
46583294 AGGTAT
64 AGGTAT
46583300 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
46583365 AGGTAT
64 AGGTAT
* * ** * *
46583371 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
46583422 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:46583466 original size:122 final size:124
Alignment explanation
Indices: 46583300--46583546 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
46583290 GTTGAGGTAT
46583300 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
46583365 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
46583421 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
46583486 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
46583546 T
1 T
46583547 CAGGACGCTG
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:46583469 original size:193 final size:191
Alignment explanation
Indices: 46583248--46583734 Score: 658
Period size: 193 Copynumber: 2.5 Consensus size: 191
46583238 TTTGTGTTTT
* * *
46583248 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-CACGCTGAGGTATTTTCAATTTTTGT
* * * *
46583313 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
64 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AGG-ACGCTGAGGTATTTTCAAT
** **
46583378 TTATGTTTT-A-AATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TTGTTTTTC
127 TTATGTTTTAAGAATCAACTCATATTGCGAGAGGTG-GTTGAA-CCTTTTAATTTCTACTTTTTC
46583439 AA
190 AA
* *
46583441 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--AGCACGCTGAGGTATTTTCAATTTTTGT
* **
46583506 GTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATT
64 -TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATT
*
46583571 TCTGTTTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAA
128 TATGTTTT-AAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAA
* * * *
46583636 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTAATTTCAATTTCTGTTG
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACGCTGAGGTATTTTCAATTTTTGTTT
*
46583701 TCAAAATCAACTCATATTGCGAGAGGTGGGTTGA
66 TCAAAATCAACTCATATTGCGAGAGGTGAGTTGA
46583735 ACCTTTTAAT
Statistics
Matches: 259, Mismatches: 28, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
192 56 0.22
193 83 0.32
194 53 0.20
195 67 0.26
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (191 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCACGCTGAGGTATTTTCAATTTTTGTTT
TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATTTAT
GTTTTAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAA
Found at i:46583511 original size:263 final size:257
Alignment explanation
Indices: 46582991--46583611 Score: 1068
Period size: 263 Copynumber: 2.4 Consensus size: 257
46582981 TTTCAAGGAA
*
46582991 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
46583056 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
46583121 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
46583186 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
46583248 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
46583313 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
46583378 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
46583443 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
46583508 TTT
255 TTT
* * * * *
46583511 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-AG-GACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
*
46583574 GTTTTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGA
64 GTTTTCAA-AATCAACTCATATTGCGAGAAGTGAGTTGA
46583612 ACCTTTTAAT
Statistics
Matches: 347, Mismatches: 8, Indels: 12
0.95 0.02 0.03
Matches are distributed among these distances:
257 120 0.35
260 2 0.01
262 4 0.01
263 164 0.47
264 25 0.07
265 32 0.09
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:46583666 original size:317 final size:323
Alignment explanation
Indices: 46583312--46583908 Score: 836
Period size: 317 Copynumber: 1.8 Consensus size: 323
46583302 TTAATTTTTG
* * * *
46583312 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAG
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGG-ACGCTGAGGTAATTTCAA
* ** **
46583377 TTTATGTT-T-TAAATTGACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TTGTTTTT
64 TTTATGTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAA-CCTTTTAATTTCTACTTTTT
* *
46583438 CAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTT-
128 CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTC
* *
46583502 TTGTGT-T-TTA-ATT-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACGCTGAGGTA
193 TT-TGTATATTATATTATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACGCCGAGGTA
*
46583562 TTTTCAATTTCTGTTTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTA
257 TTTTCAATTTCCGTTTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTA
46583627 CT
322 CT
*
46583629 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTAATTTCAATT
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACGCTGAGGTAATTTCAATT
* *
46583694 TCTGTTGTCAAAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAA
66 TATGTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAA
*
46583759 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTTT
131 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTTT
* * *
46583824 TTCATATTATGTTTTAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAG
196 GT-ATATTA--TATT-ATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG---CACGCCGAG
46583889 GTATTTTCAATTTCCGTTTT
254 GTATTTTCAATTTCCGTTTT
46583909 TCAATTTCTG
Statistics
Matches: 242, Mismatches: 21, Indels: 21
0.85 0.07 0.07
Matches are distributed among these distances:
315 22 0.09
316 3 0.01
317 78 0.32
318 71 0.29
319 2 0.01
320 1 0.00
321 3 0.01
324 2 0.01
326 34 0.14
330 26 0.11
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.37
Consensus pattern (323 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACGCTGAGGTAATTTCAATT
TATGTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTTTCAA
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTTT
GTATATTATATTATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACGCCGAGGTATTTT
CAATTTCCGTTTTCAAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACT
Found at i:46583733 original size:123 final size:123
Alignment explanation
Indices: 46583515--46583821 Score: 562
Period size: 123 Copynumber: 2.5 Consensus size: 123
46583505 TGTTTTAATT
*
46583515 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATTTCTGTTTTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATTTCTGTTGTC
46583580 AAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
66 AAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
*
46583638 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTAATTTCAATTTCTGTTGTC
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATTTCTGTTGTC
46583703 AA-AATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
66 AAGAATCAACTCATATTGCGAGAGGT-GGTTGAACCTTTTAATTTCTACTTTTTCAAAA
46583761 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--ACGCTGAGGTATTTTCAATTTCT
46583822 TTTTCATATT
Statistics
Matches: 178, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
122 23 0.13
123 133 0.75
125 22 0.12
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (123 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACGCTGAGGTATTTTCAATTTCTGTTGTC
AAGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAA
Found at i:46583911 original size:14 final size:14
Alignment explanation
Indices: 46583892--46583926 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
46583882 CGCCGAGGTA
46583892 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
46583906 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
46583920 CTTTCAA
1 TTTTCAA
46583927 AAAAAAAACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:46584030 original size:74 final size:74
Alignment explanation
Indices: 46583906--46584072 Score: 228
Period size: 74 Copynumber: 2.2 Consensus size: 74
46583896 CAATTTCCGT
*
46583906 TTTTCAATTTCTGTCTTTCAAAAAAA-AAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
46583970 CGCTGAGGTA
65 CGCTGAGGTA
* * * * *
46583980 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--AC
*
46584045 ACGCCGAGGTA
64 ACGCTGAGGTA
*
46584056 TTTTCAATTTCCGTTTT
1 TTTTCAATTTCTGTTTT
46584073 TCAATTTTTG
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
73 10 0.12
74 44 0.55
76 26 0.32
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (74 bp):
TTTTCAATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTA
Found at i:46584185 original size:165 final size:164
Alignment explanation
Indices: 46583757--46584398 Score: 882
Period size: 165 Copynumber: 3.9 Consensus size: 164
46583747 CTACTTTTTC
* *
46583757 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
46583822 -TTTTCATATTATGTTTTAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
66 GTTGTCA-A--A-----AAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCC
*
46583886 GAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAA
123 GAGGTATTTTCAATTTCCGTTTTTCAATTTTTGTCTTTCAAA
*
46583928 AAAA-AAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
46583992 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
66 GTTGTC-AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
*
46584057 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAA
130 TTTCAATTTCCGTTTTTCAATTTTTGTCTTTCAAA
46584092 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
46584157 GTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAT
66 GTTGTCAAAAAA-TCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
* * ****
46584222 TTTCAATTT-CATTTTTCAATTTCTTTTCAAAAAAA
130 TTTCAATTTCCGTTTTTCAATTT-TTGTCTTTCAAA
*
46584257 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * *** * **
46584322 GTTTTC-AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTATT
66 GTTGTCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
*
46584384 TTCAATTTCTGTTTT
131 TTCAATTTCCGTTTT
46584399 CAAAAAATCA
Statistics
Matches: 433, Mismatches: 32, Indels: 21
0.89 0.07 0.04
Matches are distributed among these distances:
161 22 0.05
162 4 0.01
163 30 0.07
164 112 0.26
165 197 0.45
169 1 0.00
170 57 0.13
171 9 0.02
172 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (164 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
TTCAATTTCCGTTTTTCAATTTTTGTCTTTCAAA
Found at i:46584193 original size:74 final size:76
Alignment explanation
Indices: 46584087--46584619 Score: 288
Period size: 77 Copynumber: 6.9 Consensus size: 76
46584077 TTTTTGCCTT
*
46584087 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
46584149 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
46584161 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
*
46584226 AATTTCAT-TTT
66 AATTTC-TGTTG
** * * * * * * * *
46584237 TCAATTTCTTTTCAAAAAAAAAAATCA-ACT-C-ATATTGCGAGAGGTGAG-TTGAGCCTCGGGA
1 TC-A---------AAAAAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCTCAG-ATC---A
*
46584298 CACG-CTGAGGTAATTTCAATTTCTGTTT
49 CACGTC-GAGGTAATTTCAATTTCTGTTG
* * ** * * *
46584326 TC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
*
46584387 AATTTCTGTTT
66 AATTTCTGTTG
* * ** * ** * *
46584398 TC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCG-CTGAGCTATTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
* *
46584461 CAATTTCTATCTT
65 CAATTTCTGT-TG
* * *
46584474 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC-ACTGAGGTATTTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTA--AT
* * *
46584538 TTCAATTTATATTTT
63 TTCAATTTCT-GTTG
* * * * * * *
46584553 TCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
46584618 AA
66 AA
46584620 AATCTGTTTT
Statistics
Matches: 351, Mismatches: 69, Indels: 75
0.71 0.14 0.15
Matches are distributed among these distances:
72 28 0.08
73 31 0.09
74 42 0.12
75 21 0.06
76 29 0.08
77 73 0.21
78 4 0.01
79 63 0.18
80 4 0.01
83 2 0.01
84 1 0.00
85 6 0.02
86 19 0.05
88 2 0.01
89 26 0.07
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:46584315 original size:89 final size:91
Alignment explanation
Indices: 46584163--46584329 Score: 243
Period size: 91 Copynumber: 1.9 Consensus size: 91
46584153 TTCTGTTGTC
* * *
46584163 AAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTCAA
46584228 TTTCAT-TTTTCAATTTCTTTTCAAAA
66 TTTC-TGTTTTCAATTTCTTTTCAAAA
**
46584254 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACG-CTGAGGTAATTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTTCA
46584316 ATTTCTGTTTTCAA
65 ATTTCTGTTTTCAA
46584330 AATTCAACTC
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
88 2 0.03
89 28 0.41
90 1 0.01
91 38 0.55
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (91 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTCAA
TTTCTGTTTTCAATTTCTTTTCAAAA
Found at i:46584357 original size:72 final size:73
Alignment explanation
Indices: 46584255--46584762 Score: 399
Period size: 72 Copynumber: 6.5 Consensus size: 73
46584245 TTTTCAAAAA
*
46584255 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
46584320 CTGTTTTC
66 CTGTTTTC
* * ** ** *
46584328 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
46584392 CTGTTTTC
66 CTGTTTTC
* * * ** *
46584400 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
46584465 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
46584476 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
46584541 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
46584555 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
46584619 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
46584632 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
46584697 GCTATTTTCAATTTCTGTTTTTTTTTTC
52 GGTATTTTCAATTTCTG------TTTTC
46584725 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
46584763 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 53, Indels: 58
0.76 0.12 0.13
Matches are distributed among these distances:
72 64 0.18
73 33 0.09
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
82 5 0.01
83 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
92 2 0.01
93 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:46584578 original size:79 final size:76
Alignment explanation
Indices: 46584254--46584972 Score: 420
Period size: 88 Copynumber: 9.0 Consensus size: 76
46584244 CTTTTCAAAA
** *
46584254 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
46584317 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * *
46584328 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
46584389 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
46584400 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
46584464 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
46584476 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
46584541 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
46584555 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
46584619 AAATCTGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
46584632 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
46584697 GCTATTTTCAATTTCTGTTTTTTTTTTC
55 GGTATTTTCAATTTCTG------TTTTC
* * * * * *
46584725 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
46584789 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
46584812 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
46584873 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
46584887 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
46584952 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
46584973 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 84, Indels: 103
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 31 0.06
75 36 0.07
76 5 0.01
77 63 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 2 0.00
82 6 0.01
83 30 0.06
84 29 0.06
85 7 0.01
86 2 0.00
87 12 0.02
88 114 0.23
89 8 0.02
90 1 0.00
91 1 0.00
92 13 0.03
93 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:46584632 original size:14 final size:13
Alignment explanation
Indices: 46584613--46584648 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
46584603 TGTCGAGGTA
46584613 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
46584626 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
46584640 TTTTCAAAA
1 TTTTCAAAA
46584649 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:46584780 original size:30 final size:30
Alignment explanation
Indices: 46584744--46584805 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
46584734 CAACTCATAT
46584744 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
46584774 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
46584804 TG
1 TG
46584806 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:46584906 original size:255 final size:249
Alignment explanation
Indices: 46584394--46584973 Score: 757
Period size: 255 Copynumber: 2.3 Consensus size: 249
46584384 TTCAATTTCT
* * *
46584394 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
46584459 TTCAATTTC-----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
* *
46584519 TCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTG
131 TCACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTG
* ** * * * **
46584584 AGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
195 AGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
46584639 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
46584703 TTCAATTTCTGTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
66 TTCAATTTCTGTTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTC
* * * * * * *
46584768 A-ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTG
128 AGA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTG
*
46584830 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
46584894 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
46584958 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
46584974 AATGTCTGTT
Statistics
Matches: 291, Mismatches: 28, Indels: 22
0.85 0.08 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
249 13 0.04
250 30 0.10
251 1 0.00
252 3 0.01
253 2 0.01
254 5 0.02
255 146 0.50
256 5 0.02
257 13 0.04
258 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (249 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGA
TCACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGA
GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:46585636 original size:16 final size:16
Alignment explanation
Indices: 46585617--46585653 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
46585607 AACCTAACCC
46585617 AAAAAAAAA-AACAAAG
1 AAAAAAAAAGAA-AAAG
46585633 AAAAAAAAAGAAAAAG
1 AAAAAAAAAGAAAAAG
46585649 AAAAA
1 AAAAA
46585654 CCTACCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 18 0.90
17 2 0.10
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:46585653 original size:46 final size:44
Alignment explanation
Indices: 46585601--46585721 Score: 124
Period size: 45 Copynumber: 2.7 Consensus size: 44
46585591 TTAAGCCCCC
46585601 AAAAAAAACCTAACCCAAAAAAAAAAACAAAGAAAAAAAAAG-AAA
1 AAAAAAAACCTAA-CCAAAAAAAAAAACAAA-AAAAAAAAAGAAAA
* * * *
46585646 AAGAAAAACCT-ACCAAAAAAACCTAACCCAAAAAAAAAAAGAAAA
1 AAAAAAAACCTAACCAAAAAAA--AAAACAAAAAAAAAAAAGAAAA
*
46585691 AAAAGAAAACCTAA-CAAAAAAAATAA-AAAAA
1 AAAA-AAAACCTAACCAAAAAAAAAAACAAAAA
46585722 CCTAGCCACC
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
43 13 0.21
44 12 0.19
45 21 0.34
46 15 0.24
47 1 0.02
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (44 bp):
AAAAAAAACCTAACCAAAAAAAAAAACAAAAAAAAAAAAGAAAA
Found at i:46585665 original size:13 final size:15
Alignment explanation
Indices: 46585649--46585681 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
46585639 AAAGAAAAAG
46585649 AAAAACCT-A-CCAA
1 AAAAACCTAACCCAA
46585662 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
46585677 AAAAA
1 AAAAA
46585682 AAAAGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 1 0.06
15 9 0.50
ACGTcount: A:0.67, C:0.27, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:46585691 original size:28 final size:27
Alignment explanation
Indices: 46585660--46585725 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 27
46585650 AAAACCTACC
46585660 AAAAAAACCTAACCCAAAAAAAAAAAGA
1 AAAAAAACCTAACCCAAAAAAAAAAA-A
*** * * *
46585688 AAAAAAAGAAAACCTAACAAAAAAAAT
1 AAAAAAACCTAACCCAAAAAAAAAAAA
46585715 AAAAAAACCTA
1 AAAAAAACCTA
46585726 GCCACCTAAC
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.76, C:0.15, G:0.03, T:0.06
Consensus pattern (27 bp):
AAAAAAACCTAACCCAAAAAAAAAAAA
Found at i:46589539 original size:40 final size:39
Alignment explanation
Indices: 46589490--46589623 Score: 153
Period size: 40 Copynumber: 3.4 Consensus size: 39
46589480 TCTTCGGAAT
* *
46589490 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** *
46589529 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
46589569 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
46589609 TTAGCCCGGATATAA
1 TTAGCCCGGATATAA
46589624 TCACTACACT
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.04
40 73 0.94
41 2 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:46597766 original size:40 final size:40
Alignment explanation
Indices: 46597708--46597964 Score: 320
Period size: 40 Copynumber: 6.5 Consensus size: 40
46597698 AACCGAGTCT
* * * * *
46597708 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * ** * *
46597747 CTTCGGGTCTTAACCCGGATTTGGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
46597787 CTTCGGGTCTTAGCCCGGATATAA-CAACTCGCACGAATGC
1 CTTCGGGACTTAGCCCGGATATAATC-ACTAGCACAAATGC
* *
46597827 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
46597867 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
46597907 CTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
46597947 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
46597965 GTATCATTCA
Statistics
Matches: 192, Mismatches: 23, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
39 9 0.05
40 182 0.95
41 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:46600100 original size:43 final size:43
Alignment explanation
Indices: 46599949--46600101 Score: 170
Period size: 43 Copynumber: 3.6 Consensus size: 43
46599939 TCGACTTATG
* *
46599949 AGACCACGTCTGGGACGTTGACATCGACT-TATGATTTACATGTA
1 AGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACATGTA
* * * *
46599993 AGACGACGTTTGGGACGTTGGCATCG-TACTTGATTTCATGTA
1 AGACCACGTCTGGGACGTTGGCATCGATATTTGATTACATGTA
* *
46600035 AGATCC-TGTCTAGGACAG-TGGCATCGATATTTGATTACATGTA
1 AGA-CCACGTCTGGGAC-GTTGGCATCGATATTTGATTACATGTA
46600078 AGACCACGTCTGGGACGTTGGCAT
1 AGACCACGTCTGGGACGTTGGCAT
46600102 TGTACAAGCT
Statistics
Matches: 89, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 30 0.34
43 36 0.40
44 23 0.26
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
AGACCACGTCTGGGACGTTGGCATCGATATTTGATTACATGTA
Found at i:46605328 original size:40 final size:40
Alignment explanation
Indices: 46605284--46605454 Score: 184
Period size: 40 Copynumber: 4.2 Consensus size: 40
46605274 CTTTGGGACA
* * *
46605284 TAGCCCGG-TTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 TAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAAT
* *
46605324 TAGCCCGGATTTAGTAACTCGCACAATTGCCTTCGGGACT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * *
46605364 TAACCCGGTTTTGGTAACTCACACAAATGCCTTCGGGAAT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * *
46605404 T-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAAT
46605445 TAGCCCGGAT
1 TAGCCCGGAT
46605455 ACCATTCGAA
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
40 81 0.74
41 28 0.25
42 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
Found at i:46607637 original size:38 final size:38
Alignment explanation
Indices: 46607552--46607692 Score: 219
Period size: 39 Copynumber: 3.7 Consensus size: 38
46607542 CCGCACAAAG
* * * *
46607552 GCCTTCGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAA-CTGCACAATT
*
46607591 GCCTTCGGGCTTAGCCCGGATATCATAACTGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTGCACAATT
46607629 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACT-GCACAATT
46607668 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
46607693 CTCGAACATT
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
38 38 0.40
39 57 0.60
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTGCACAATT
Found at i:46609391 original size:2 final size:2
Alignment explanation
Indices: 46609384--46609419 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
46609374 ATGTGCAAAC
*
46609384 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46609420 GCTAGAGCCG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46610438 original size:28 final size:28
Alignment explanation
Indices: 46610407--46610465 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
46610397 GCAAGACATT
**
46610407 GAGCATGGCACTTAGTGTGCGTGATATC
1 GAGCATGGCACTTAGTGTGCGAAATATC
46610435 GAGCATGGCACTTAGTGTGCGAAATATC
1 GAGCATGGCACTTAGTGTGCGAAATATC
46610463 GAG
1 GAG
46610466 TATTCAACGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (28 bp):
GAGCATGGCACTTAGTGTGCGAAATATC
Found at i:46616013 original size:49 final size:49
Alignment explanation
Indices: 46615939--46616238 Score: 546
Period size: 49 Copynumber: 6.1 Consensus size: 49
46615929 GTACATAATA
*
46615939 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
46615988 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
46616037 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
46616086 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
46616135 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * *
46616184 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
46616233 ATATAT
1 ATATAT
46616239 ATGTGGTAAA
Statistics
Matches: 243, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 243 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:46616367 original size:37 final size:36
Alignment explanation
Indices: 46616307--46616393 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
46616297 AACTTGGAAA
*
46616307 TATGTTCCGGGTGAGACCTGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
46616345 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
46616382 TATGTCCGGGTA
1 TATGTCCGGGTA
46616394 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.21, C:0.18, G:0.33, T:0.28
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:46618264 original size:40 final size:40
Alignment explanation
Indices: 46618209--46618520 Score: 516
Period size: 40 Copynumber: 7.8 Consensus size: 40
46618199 GAGAATTGAG
*
46618209 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
46618249 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
46618289 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
46618329 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
46618369 AGTGACGCATCCGGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * * *
46618409 AGTGACGCATCCAGACTAAGTTTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
46618449 AGTGATGTATCCGGAATAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
46618489 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
46618521 ATCATGCTGG
Statistics
Matches: 258, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 258 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:46623664 original size:24 final size:24
Alignment explanation
Indices: 46623632--46623683 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
46623622 GAGACCTTAG
46623632 CCTTACCTTTCTTAGTGCGCTTTC
1 CCTTACCTTTCTTAGTGCGCTTTC
*
46623656 CCTTACCTTTCTTAGTGCGCTTTT
1 CCTTACCTTTCTTAGTGCGCTTTC
46623680 CCTT
1 CCTT
46623684 CACTTCCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.33, G:0.12, T:0.48
Consensus pattern (24 bp):
CCTTACCTTTCTTAGTGCGCTTTC
Found at i:46628856 original size:24 final size:24
Alignment explanation
Indices: 46628829--46628876 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
46628819 ATATAGATTA
*
46628829 GAATTTTAATAGTTATT-ATTAAAT
1 GAATTTTAATA-TAATTGATTAAAT
46628853 GAATTTTAATATAATTGATTAAAT
1 GAATTTTAATATAATTGATTAAAT
46628877 TCTATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (24 bp):
GAATTTTAATATAATTGATTAAAT
Found at i:46629242 original size:6 final size:6
Alignment explanation
Indices: 46629233--46629257 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
46629223 CCAAACCCGA
46629233 TTTAAT TTTAAT TTTAAT TTTAAT T
1 TTTAAT TTTAAT TTTAAT TTTAAT T
46629258 ATATTATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTAAT
Found at i:46631645 original size:46 final size:46
Alignment explanation
Indices: 46631572--46631838 Score: 277
Period size: 46 Copynumber: 5.8 Consensus size: 46
46631562 GCTACATGTT
* *
46631572 GTGTAGGTTCAACCCTGACGGGTGACCAGGCATTATTATTCGATTC
1 GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATTCGATTC
* * * * *
46631618 ATTTATGTTCAACTCTAACGGGTGACCAAGCACTATTATTCGATTC
1 GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATTCGATTC
* * *
46631664 GTGTGGGTTCAACCCTAACGGGTGACTAGGCACTATTATTTGATTC
1 GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATTCGATTC
* * * *
46631710 -TGTAGGTTCAACCTTAACAGTTGACCAGACACTATTA-TCTGATTC
1 GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATTC-GATTC
* * * * * *
46631755 GTGTAAGTTTAATCCAAACGGGTAACCAAGCACTATTATTCGATTC
1 GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATTCGATTC
* * * * **
46631801 GTGTAGGTTTAACCCAAACGAGTAACCAAACACTATTA
1 GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTA
46631839 CTTTCATTTG
Statistics
Matches: 182, Mismatches: 36, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
44 1 0.01
45 36 0.20
46 143 0.79
47 2 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (46 bp):
GTGTAGGTTCAACCCTAACGGGTGACCAGGCACTATTATTCGATTC
Found at i:46631775 original size:91 final size:93
Alignment explanation
Indices: 46631572--46631814 Score: 262
Period size: 91 Copynumber: 2.6 Consensus size: 93
46631562 GCTACATGTT
* ** * * *
46631572 GTGTAGGTTCAACCCTGACGGGTGACCAGGCATTATTATTCGATTCATTTATGTTCAA-CTCTAA
1 GTGTAAGTTCAACCCAAACGGGTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCTCTAA
*
46631636 CGGGTGACCAAGCACTATTATTCGATTC
66 CAGGTGACCAAGCACTATTATTCGATTC
** * * *
46631664 GTGTGGGTTCAACCCTAACGGGTGACTAGGCACTATTATTTGATTC-TGTAGGTTCAACCT-TAA
1 GTGTAAGTTCAACCCAAACGGGTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCTCTAA
*
46631727 CAGTTGACC-AGACACTATTA-TCTGATTC
66 CAGGTGACCAAG-CACTATTATTC-GATTC
* * * * * *
46631755 GTGTAAGTTTAATCCAAACGGGTAACCAAGCACTATTATTCGATTCGTGTAGGTTTAACC
1 GTGTAAGTTCAACCCAAACGGGTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACC
46631815 CAAACGAGTA
Statistics
Matches: 128, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
90 4 0.03
91 69 0.54
92 55 0.43
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (93 bp):
GTGTAAGTTCAACCCAAACGGGTGACCAGGCACTATTATTCGATTCATGTAGGTTCAACCTCTAA
CAGGTGACCAAGCACTATTATTCGATTC
Found at i:46633308 original size:48 final size:48
Alignment explanation
Indices: 46633234--46633553 Score: 399
Period size: 48 Copynumber: 6.7 Consensus size: 48
46633224 ATAAGGTCTC
* * *
46633234 GTGTAAGACCATATCTGGGACGTGGCATCGGCGTTGATATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * *
46633282 GTGTAAGACCATGCCTGGGACATGGCATCGGCATGGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* *
46633330 GTGTAAGACCATGTCTAGGACATGGCATTGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * * * *
46633378 ATGTAAGACCATGTTTGGGTCATGGCATCGGTGCTGATATTTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * * *
46633426 GTGTAAGACCTTGTCTGGGACATGGCATTGGCATAGATATGTGAGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
* * * *
46633474 GTGTAAGACCATGTCTGGAACATGGCATCCGCGCTGATATGTGTA-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTG-AGCCA
* *
46633522 CTGTAAGACCATGTCTGGGACATGACATCGGC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC
46633554 ACTGACATGA
Statistics
Matches: 230, Mismatches: 41, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
48 229 1.00
49 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCA
Found at i:46635588 original size:20 final size:20
Alignment explanation
Indices: 46635560--46635597 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46635550 GACCACATGG
46635560 CCTACCCACACGGGCGTGCC
1 CCTACCCACACGGGCGTGCC
* *
46635580 CCTATCCACATGGGCGTG
1 CCTACCCACACGGGCGTG
46635598 TGGCCCTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.42, G:0.26, T:0.16
Consensus pattern (20 bp):
CCTACCCACACGGGCGTGCC
Found at i:46635993 original size:22 final size:23
Alignment explanation
Indices: 46635968--46636013 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
46635958 CAACCAAATC
46635968 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
46635990 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
46636013 A
1 A
46636014 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:46636019 original size:23 final size:23
Alignment explanation
Indices: 46635975--46636019 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
46635965 ATCAATTCAA
*
46635975 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
46635998 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
46636020 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:46645381 original size:21 final size:21
Alignment explanation
Indices: 46645352--46645391 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46645342 TAAGATAAGC
*
46645352 CAACTTTGAAAATGACTTCTT
1 CAACATTGAAAATGACTTCTT
*
46645373 CAACATTGAAAATGGCTTC
1 CAACATTGAAAATGACTTC
46645392 GGTTCTCCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (21 bp):
CAACATTGAAAATGACTTCTT
Found at i:46646060 original size:43 final size:43
Alignment explanation
Indices: 46645990--46646139 Score: 167
Period size: 43 Copynumber: 3.5 Consensus size: 43
46645980 TTATTTGAAA
* * * *
46645990 AAACACCGTTAAAGGTCATAACTTTTAGCAGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACTTTTAGCAGCGCTTTTCCAAC
* **
46646033 AAACGCCGCTAAAGGTCATGACTTTTAGC-GACACTTTTCTTAC
1 AAACGCCGCTAAAGGTCATGACTTTTAGCAG-CGCTTTTCCAAC
* * * * *
46646076 AAACGCCGCTAAAAGTCATGACCTTTAACAACGCTTTTTCAAC
1 AAACGCCGCTAAAGGTCATGACTTTTAGCAGCGCTTTTCCAAC
*
46646119 AAACGCCGCTAAATGTCATGA
1 AAACGCCGCTAAAGGTCATGA
46646140 AAGTAAAAAA
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
42 1 0.01
43 89 0.99
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACTTTTAGCAGCGCTTTTCCAAC
Found at i:46646412 original size:18 final size:19
Alignment explanation
Indices: 46646384--46646424 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
46646374 ATTTAGAATC
46646384 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
46646403 AAAACT-AAATTAATTATA
1 AAAACTAAAATAAATAATA
46646421 AAAA
1 AAAA
46646425 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:46649784 original size:17 final size:17
Alignment explanation
Indices: 46649762--46649794 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46649752 AAAATAAAGA
46649762 GTCTAAATAACATAATG
1 GTCTAAATAACATAATG
46649779 GTCTAAATAACATAAT
1 GTCTAAATAACATAAT
46649795 TGTTTAGGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.30
Consensus pattern (17 bp):
GTCTAAATAACATAATG
Found at i:46651303 original size:14 final size:14
Alignment explanation
Indices: 46651284--46651310 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46651274 ATATTGAGAT
46651284 CCTGTCAAGCAGAA
1 CCTGTCAAGCAGAA
46651298 CCTGTCAAGCAGA
1 CCTGTCAAGCAGA
46651311 CATCCTGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.30, G:0.22, T:0.15
Consensus pattern (14 bp):
CCTGTCAAGCAGAA
Found at i:46653119 original size:10 final size:10
Alignment explanation
Indices: 46653106--46653132 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
46653096 AGAGGAAAGG
46653106 GGAGGGATTT
1 GGAGGGATTT
46653116 GGAGGGATTT
1 GGAGGGATTT
46653126 GGAGGGA
1 GGAGGGA
46653133 GAGGAGAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.56, T:0.22
Consensus pattern (10 bp):
GGAGGGATTT
Found at i:46653512 original size:3 final size:3
Alignment explanation
Indices: 46653506--46653538 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
46653496 TTTTTTTTTC
46653506 TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TA
46653539 AAATGGTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:46654165 original size:7 final size:7
Alignment explanation
Indices: 46654153--46654281 Score: 66
Period size: 7 Copynumber: 18.1 Consensus size: 7
46654143 ACTAATTAAT
46654153 CTAAACC
1 CTAAACC
46654160 CTAAACC
1 CTAAACC
*
46654167 TCTTAACCC
1 -C-TAAACC
*
46654176 CT-ATCC
1 CTAAACC
* *
46654182 TATAAACA
1 -CTAAACC
46654190 CTAAACC
1 CTAAACC
46654197 CTAAACC
1 CTAAACC
* *
46654204 CTTAACT
1 CTAAACC
*
46654211 CTTAACC
1 CTAAACC
*
46654218 TTAAACC
1 CTAAACC
*
46654225 CTTACACC
1 C-TAAACC
* *
46654233 TTAAACT
1 CTAAACC
46654240 CT-AACC
1 CTAAACC
46654246 CT-AACC
1 CTAAACC
46654252 TCTAAACC
1 -CTAAACC
*
46654260 CTAAATC
1 CTAAACC
* *
46654267 ATAATCC
1 CTAAACC
46654274 CTAAACC
1 CTAAACC
46654281 C
1 C
46654282 ATAATTCATC
Statistics
Matches: 90, Mismatches: 25, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
6 12 0.13
7 60 0.67
8 13 0.14
9 5 0.06
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (7 bp):
CTAAACC
Found at i:46654222 original size:28 final size:28
Alignment explanation
Indices: 46654190--46654281 Score: 86
Period size: 28 Copynumber: 3.3 Consensus size: 28
46654180 CCTATAAACA
46654190 CTAAACCCTAAACCCTT-AACTCTTAACC
1 CTAAACCCTAAACCCTTAAACTC-TAACC
* *
46654218 TTAAACCCT-TACACCTTAAACTCTAACC
1 CTAAACCCTAAAC-CCTTAAACTCTAACC
46654246 CT-AACCTCTAAACCC-TAAA-TCATAATCC
1 CTAAACC-CTAAACCCTTAAACTC-TAA-CC
46654274 CTAAACCC
1 CTAAACCC
46654282 ATAATTCATC
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
26 2 0.04
27 13 0.25
28 27 0.51
29 11 0.21
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.25
Consensus pattern (28 bp):
CTAAACCCTAAACCCTTAAACTCTAACC
Found at i:46654719 original size:40 final size:41
Alignment explanation
Indices: 46654570--46654736 Score: 230
Period size: 41 Copynumber: 4.1 Consensus size: 41
46654560 TTTATATGAC
* *
46654570 TTTTAGCGGCGTTTTACCAACAGCGCTGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
46654611 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
* *
46654652 TTTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
*** *
46654692 TTTTAGCGGCGCTTTTGGTAAAA-CGCCGCTATTGCTCTGTGT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTG-GT
46654734 TTT
1 TTT
46654737 ACAATTTTTG
Statistics
Matches: 113, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
40 25 0.22
41 84 0.74
42 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGT
Found at i:46664321 original size:9 final size:9
Alignment explanation
Indices: 46664307--46664333 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
46664297 ATCATTTCTT
46664307 AATTTAGCC
1 AATTTAGCC
46664316 AATTTAGCC
1 AATTTAGCC
46664325 AATTTAGCC
1 AATTTAGCC
46664334 GGCAGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (9 bp):
AATTTAGCC
Found at i:46673141 original size:2 final size:2
Alignment explanation
Indices: 46673134--46673170 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
46673124 TTCCATAAAG
46673134 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
46673171 AGTAATGATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:46681677 original size:131 final size:131
Alignment explanation
Indices: 46681443--46681705 Score: 526
Period size: 131 Copynumber: 2.0 Consensus size: 131
46681433 ATAAGTGTTT
46681443 TATTGTAGTTATGAGTTATATGCTTATTGATTGTTATGAAAGCATGAATGTTATTATGGTCGTGA
1 TATTGTAGTTATGAGTTATATGCTTATTGATTGTTATGAAAGCATGAATGTTATTATGGTCGTGA
46681508 TTTACAACGTTACGAGCAAGTACGAGGGAGATACTATCTGCAAGTGAGGAAAATCCCTTTTGAAC
66 TTTACAACGTTACGAGCAAGTACGAGGGAGATACTATCTGCAAGTGAGGAAAATCCCTTTTGAAC
46681573 C
131 C
46681574 TATTGTAGTTATGAGTTATATGCTTATTGATTGTTATGAAAGCATGAATGTTATTATGGTCGTGA
1 TATTGTAGTTATGAGTTATATGCTTATTGATTGTTATGAAAGCATGAATGTTATTATGGTCGTGA
46681639 TTTACAACGTTACGAGCAAGTACGAGGGAGATACTATCTGCAAGTGAGGAAAATCCCTTTTGAAC
66 TTTACAACGTTACGAGCAAGTACGAGGGAGATACTATCTGCAAGTGAGGAAAATCCCTTTTGAAC
46681704 C
131 C
46681705 T
1 T
46681706 TAGGAATAGT
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
131 132 1.00
ACGTcount: A:0.30, C:0.12, G:0.23, T:0.35
Consensus pattern (131 bp):
TATTGTAGTTATGAGTTATATGCTTATTGATTGTTATGAAAGCATGAATGTTATTATGGTCGTGA
TTTACAACGTTACGAGCAAGTACGAGGGAGATACTATCTGCAAGTGAGGAAAATCCCTTTTGAAC
C
Found at i:46684403 original size:40 final size:39
Alignment explanation
Indices: 46684332--46684576 Score: 325
Period size: 40 Copynumber: 6.2 Consensus size: 39
46684322 AAACCAAGTA
* * * *
46684332 CCTTCGGGATTTA-ACCAGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
*
46684371 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
46684411 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
46684451 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
*
46684491 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
* *
46684531 CCTTCCGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
46684571 CCTTCG
1 CCTTCG
46684577 TTATCATCCG
Statistics
Matches: 192, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.08
40 176 0.92
41 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:46686904 original size:43 final size:44
Alignment explanation
Indices: 46686875--46686982 Score: 141
Period size: 43 Copynumber: 2.5 Consensus size: 44
46686865 TCCCTGACGT
*
46686875 GGTCTTACATGTAATCACATATCGATGCC-ACTATTCCAAACAG
1 GGTCTTACATGTAATCACATATCGATGCCAACTATCCCAAACAG
* * *
46686918 GGTCTTACTTGTAATCACATATCGATGCC-ACTGTCCCAAACAA
1 GGTCTTACATGTAATCACATATCGATGCCAACTATCCCAAACAG
*
46686961 GGTCTTAC-TCCTAATCACATAT
1 GGTCTTACAT-GTAATCACATAT
46686983 TGCACACATA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.02
43 58 0.98
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (44 bp):
GGTCTTACATGTAATCACATATCGATGCCAACTATCCCAAACAG
Found at i:46688201 original size:14 final size:14
Alignment explanation
Indices: 46688184--46688210 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46688174 AAATTACAAA
46688184 AATTTCACACATAT
1 AATTTCACACATAT
46688198 AATTTCACACATA
1 AATTTCACACATA
46688211 ATAAAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTTCACACATAT
Found at i:46698456 original size:14 final size:14
Alignment explanation
Indices: 46698439--46698465 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46698429 AAATCACAAA
46698439 AATTTCACACATAT
1 AATTTCACACATAT
46698453 AATTTCACACATA
1 AATTTCACACATA
46698466 ATAAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (14 bp):
AATTTCACACATAT
Found at i:46700397 original size:32 final size:33
Alignment explanation
Indices: 46700361--46700427 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 33
46700351 AGCCACATGA
* * *
46700361 CCCAAATTGGCCTTGGCCGTGTGGATCACA-GG
1 CCCAAATTAGCCTGGGCCGTATGGATCACACGG
*
46700393 CCCAAATTAGCCTGGGCTGTATGGATCACACGG
1 CCCAAATTAGCCTGGGCCGTATGGATCACACGG
46700426 CC
1 CC
46700428 TGGCCTAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 26 0.87
33 4 0.13
ACGTcount: A:0.21, C:0.30, G:0.28, T:0.21
Consensus pattern (33 bp):
CCCAAATTAGCCTGGGCCGTATGGATCACACGG
Found at i:46700605 original size:12 final size:12
Alignment explanation
Indices: 46700588--46700621 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
46700578 CGCTTATGTA
46700588 CTACCACACGGC
1 CTACCACACGGC
*
46700600 CTACCACACGGT
1 CTACCACACGGC
*
46700612 CGACCACACG
1 CTACCACACG
46700622 CCCATGTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.47, G:0.18, T:0.09
Consensus pattern (12 bp):
CTACCACACGGC
Found at i:46706464 original size:29 final size:30
Alignment explanation
Indices: 46706421--46706480 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
46706411 AATCAAGTTA
* *
46706421 TTCGAGTCAACTCAA-TTT-TTTTTTGAAT
1 TTCGAGTCAAATCAAGTTTAATTTTTGAAT
46706449 TTCGAGTTCAAATCAAGTTTAATTTTTGAAT
1 TTCGAG-TCAAATCAAGTTTAATTTTTGAAT
46706480 T
1 T
46706481 CGAATAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 6 0.22
29 8 0.30
30 3 0.11
31 10 0.37
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (30 bp):
TTCGAGTCAAATCAAGTTTAATTTTTGAAT
Found at i:46711028 original size:42 final size:41
Alignment explanation
Indices: 46710907--46711061 Score: 184
Period size: 42 Copynumber: 3.7 Consensus size: 41
46710897 TACCATACCA
* * * * *
46710907 ATGCCATATTCCAGATATGGTCCTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AATCTCAAATTG
* * * *
46710949 ATGCCAATAGCCCAGCTATGGTCTTACAGGAAATCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACG-AATCTCAAATTG
*
46710992 ATGCCATATCCTAGATATGGTCTTACACGAAGTCTCAAATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAA-TCTCAAATTG
46711034 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTCTTACAC
46711062 ATGGTCTCAG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
41 2 0.02
42 61 0.63
43 34 0.35
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (41 bp):
ATGCCATATCCCAGATATGGTCTTACACGAATCTCAAATTG
Found at i:46714062 original size:24 final size:24
Alignment explanation
Indices: 46714030--46714188 Score: 264
Period size: 24 Copynumber: 6.6 Consensus size: 24
46714020 TATCTCAAAT
*
46714030 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTTACTATG
46714054 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46714078 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
46714102 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
46714126 GCACTACGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
* *
46714150 GCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATG
*
46714174 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
46714189 ACATAATAAG
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 129 1.00
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:46714201 original size:48 final size:48
Alignment explanation
Indices: 46714030--46714210 Score: 256
Period size: 48 Copynumber: 3.8 Consensus size: 48
46714020 TATCTCAAAT
* *
46714030 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
*
46714078 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
* * *
46714126 GCACTACGTGTGCGATTTACTATAGCACTATGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
* ** *
46714174 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ATTTACTATAGCACTATGTGTGC
46714211 CACATTCGGT
Statistics
Matches: 122, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
48 117 0.96
49 5 0.04
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATTTACTATG
Found at i:46714202 original size:72 final size:72
Alignment explanation
Indices: 46714030--46714210 Score: 222
Period size: 72 Copynumber: 2.5 Consensus size: 72
46714020 TATCTCAAAT
* * * *
46714030 GCACTATGTGTGCGA-TTCACTATGGCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAT
1 GCACTATGTGTGCGACAT-AATATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGAT
*
46714094 TTACTATG
65 TTACTATA
** * * *
46714102 GCACTATGTGTGCGATTTACTATGGCACTACGTGTGCGATTTACTATAGCACTATGTGTGCGATT
1 GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
*
46714167 TGCTATA
66 TACTATA
*
46714174 GCTCTATGTGTGCGAACATAATA-AGCACTATGTGTGC
1 GCACTATGTGTGCG-ACATAATATAGCACTATGTGTGC
46714211 CACATTCGGT
Statistics
Matches: 97, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
72 90 0.93
73 7 0.07
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (72 bp):
GCACTATGTGTGCGACATAATATAGCACTATGTGTGCGATTTACTATAGCACTATGTGTGCGATT
TACTATA
Found at i:46721334 original size:15 final size:14
Alignment explanation
Indices: 46721316--46721351 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
46721306 AACCTAACCC
46721316 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
*
46721330 GAAAAAAAAAAGAAA
1 -AAAAAAAAAACAAA
46721345 AAAAAAA
1 AAAAAAA
46721352 CCTACCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.92, C:0.03, G:0.06, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:46721348 original size:11 final size:11
Alignment explanation
Indices: 46721319--46721351 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
46721309 CTAACCCAAA
46721319 AAAAAAACAAAG
1 AAAAAAA-AAAG
46721331 AAAAAAAAAAG
1 AAAAAAAAAAG
46721342 AAAAAAAAAA
1 AAAAAAAAAA
46721352 CCTACCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:46721361 original size:13 final size:15
Alignment explanation
Indices: 46721345--46721379 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
46721335 AAAAAAGAAA
46721345 AAAAAAACCT-A-CC
1 AAAAAAACCTAACCC
46721358 AAAAAAACCTAACCC
1 AAAAAAACCTAACCC
46721373 AAAAAAA
1 AAAAAAA
46721380 AAAGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
14 1 0.05
15 9 0.45
ACGTcount: A:0.69, C:0.26, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAAAACCTAACCC
Found at i:46721361 original size:15 final size:17
Alignment explanation
Indices: 46721343--46721381 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 17
46721333 AAAAAAAAGA
46721343 AAAAAAAAACCT-A-CC
1 AAAAAAAAACCTAACCC
46721358 --AAAAAAACCTAACCC
1 AAAAAAAAACCTAACCC
46721373 AAAAAAAAA
1 AAAAAAAAA
46721382 AGAAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
13 10 0.50
14 1 0.05
15 2 0.10
17 7 0.35
ACGTcount: A:0.72, C:0.23, G:0.00, T:0.05
Consensus pattern (17 bp):
AAAAAAAAACCTAACCC
Found at i:46723957 original size:12 final size:12
Alignment explanation
Indices: 46723940--46723975 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
46723930 ATTCATTTGA
46723940 CATTCATGCATT
1 CATTCATGCATT
46723952 CATTCATGCATT
1 CATTCATGCATT
*
46723964 CATTCATACATT
1 CATTCATGCATT
46723976 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:46729275 original size:70 final size:68
Alignment explanation
Indices: 46729156--46729611 Score: 388
Period size: 70 Copynumber: 6.7 Consensus size: 68
46729146 GAGTTAAGCC
*
46729156 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGC
46729220 TGAGGTA
62 TGAGGTA
* * * * *
46729227 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTG
46729292 AGGTA
64 AGGTA
* *
46729297 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTG
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTG
46729362 AGGTA
64 AGGTA
* * * ** * * *
46729367 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT--------TTTA-
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAG
46729423 --A
66 GTA
** ** *
46729424 TTTT-TGTTTTTCA---AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGA
46729485 GGTA
65 GGTA
* * * * *
46729489 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACATGA
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGC
46729554 TGAGGTA
62 TGAGGTA
* *
46729561 ATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGA
1 TTTTCAATTTTTGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTTGA
46729612 ACCTTTTAAT
Statistics
Matches: 312, Mismatches: 46, Indels: 53
0.76 0.11 0.13
Matches are distributed among these distances:
53 31 0.10
56 5 0.02
57 5 0.02
60 2 0.01
62 2 0.01
65 5 0.02
67 4 0.01
68 32 0.10
69 3 0.01
70 90 0.29
71 44 0.14
72 65 0.21
73 23 0.07
74 1 0.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (68 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAG
GTA
Found at i:46729463 original size:121 final size:124
Alignment explanation
Indices: 46729298--46729537 Score: 380
Period size: 121 Copynumber: 2.0 Consensus size: 124
46729288 GTTGAGGTAT
46729298 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
46729362 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
46729418 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * *
46729483 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTT
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTT
46729538 GACCCTCAGG
Statistics
Matches: 108, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
120 12 0.11
121 40 0.37
122 19 0.18
123 1 0.01
124 13 0.12
125 23 0.21
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.40
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:46729486 original size:262 final size:257
Alignment explanation
Indices: 46728989--46729611 Score: 1052
Period size: 262 Copynumber: 2.4 Consensus size: 257
46728979 TTTCAAGGAA
*
46728989 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
46729054 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
46729119 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
46729184 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
46729246 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
46729311 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGG-CACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
46729375 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
46729440 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
46729505 TTT
255 TTT
* * * * * * * *
46729508 AATTTCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACATGATGAGGTAATTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
*
46729573 GTTTGTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGA
64 GTTT-TCAA-AATCAACTCATATTGCGAGAAGTGAGTTGA
46729612 ACCTTTTAAT
Statistics
Matches: 346, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
256 12 0.03
257 108 0.31
259 2 0.01
261 4 0.01
262 131 0.38
264 57 0.16
265 9 0.03
266 23 0.07
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.36
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:46729539 original size:72 final size:71
Alignment explanation
Indices: 46729418--46729611 Score: 239
Period size: 72 Copynumber: 2.7 Consensus size: 71
46729408 GAGTTAAGCC
* * * * *
46729418 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACACGA
46729482 TGAGGTA
65 TGAGGTA
** *
46729489 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACATGA
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACACGA
46729554 TGAGGTA
65 TGAGGTA
* * *
46729561 ATTTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGA
1 TTTTCAATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
46729612 ACCTTTTAAT
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
71 6 0.06
72 74 0.70
73 26 0.25
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACACGAT
GAGGTA
Found at i:46729648 original size:198 final size:192
Alignment explanation
Indices: 46729246--46729736 Score: 619
Period size: 198 Copynumber: 2.5 Consensus size: 192
46729236 TTTGTGTTTT
* * * *
46729246 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTATTTTCAATTTTTGT
* * * * * * *
46729311 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTTAGTT
66 TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGGACACGATGAGGTAATTTCAATT
** **
46729376 TATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAA
131 TATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAA
* * * *
46729438 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTATTTTCAATTTTTGT
* ** *
46729503 GTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGACCCTCAGGACATGATGAGGTAATTTCAA
66 -TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTC-GGACACGATGAGGTAATTTCAA
*
46729568 TTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGAA-CCTTTTAATTTCTACTTT
129 TTTATGTTT-T--A-AATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTAATTT-TACTTT
46729631 TTCAA
188 TTCAA
* * * *
46729636 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTATTTTCAATTTTTGT
*
46729701 TGTCAAGAATCAACTCATATTGCGAGAGGTG-GTTGA
66 TTTCAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
46729737 ACCTTTTAAT
Statistics
Matches: 255, Mismatches: 35, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
192 58 0.23
193 36 0.14
194 24 0.09
195 1 0.00
197 24 0.09
198 112 0.44
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.36
Consensus pattern (192 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTATTTTCAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGGACACGATGAGGTAATTTCAATT
TATGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTACTTTTTCAA
Found at i:46729745 original size:125 final size:126
Alignment explanation
Indices: 46729516--46729823 Score: 555
Period size: 125 Copynumber: 2.5 Consensus size: 126
46729506 TTAATTTCAA
*
46729516 CTCATATTGCGAGAGGTGAGTTGACCCTCAGGACATGATGAGGTAATTTCAATTTCTGTTTGTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATTTCTGTTTGTCA
46729581 AGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
66 AGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
46729642 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATTTCTG-TTGTCA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATTTCTGTTTGTCA
46729706 AGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
66 AGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
* * ** *
46729767 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATTTCT
46729824 ATTTTCATTA
Statistics
Matches: 176, Mismatches: 6, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
125 119 0.68
126 57 0.32
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (126 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGATGAGGTAATTTCAATTTCTGTTTGTCA
AGAATCAACTCATATTGCGAGAGGTGGTTGAACCTTTTAATTTCTACTTTTTCAAAATCAG
Found at i:46729953 original size:90 final size:90
Alignment explanation
Indices: 46729767--46729999 Score: 305
Period size: 90 Copynumber: 2.6 Consensus size: 90
46729757 TCAAAATCAG
*
46729767 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCCGAGGTATTTTCAATTT-CTATTTTC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGATTTTC
* * * * **
46729830 ATTATTATGTTTTTGAAAGAATCAA
66 AATATTATGTCTTTCAAAAAAAAAA
* * *
46729855 CTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGGTTTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCCGAGGTATTTTCAATTTCCGATTTT
*
46729920 CAAT-TTCTGTCTTTCAAAAAAAAAA
65 CAATATTATGTCTTTCAAAAAAAAAA
* *
46729945 CTCATATTGCGAGAGGTGAGTTGAGCCT-AGG-ACACGCTGAGGTAATTTCAATTTC
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTC
46730000 TGTTGTCAAA
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
87 22 0.17
88 31 0.24
89 3 0.02
90 63 0.50
91 8 0.06
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.33
Consensus pattern (90 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCAATTTCCGATTTTC
AATATTATGTCTTTCAAAAAAAAAA
Found at i:46730039 original size:73 final size:75
Alignment explanation
Indices: 46729917--46730075 Score: 216
Period size: 73 Copynumber: 2.1 Consensus size: 75
46729907 AATTTCCGGT
* *
46729917 TTTCAATTTCTGTCTTTCAAAAAAAAAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGG-ACAC
1 TTTCAATTTCTGTCTGTCAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACAC
*
46729980 GCTGAGGTAA
66 GCCGAGGTAA
* * *
46729990 TTTCAATTTCTGT-TGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTCTGTCAAAAAAA-AAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CAC
*
46730054 ACGCCGAGGTAT
64 ACGCCGAGGTAA
46730066 TTTCAATTTC
1 TTTCAATTTC
46730076 CGTTTTTCAA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
72 10 0.13
73 40 0.53
74 3 0.04
76 22 0.29
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (75 bp):
TTTCAATTTCTGTCTGTCAAAAAAAAAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACAC
GCCGAGGTAA
Found at i:46730202 original size:74 final size:76
Alignment explanation
Indices: 46730096--46730240 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
46730086 TTTTTGCCTT
*
46730096 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
46730158 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
46730170 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
46730235 AATTTC
66 AATTTC
46730241 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:46730210 original size:165 final size:165
Alignment explanation
Indices: 46729849--46730416 Score: 806
Period size: 165 Copynumber: 3.4 Consensus size: 165
46729839 TTTTTGAAAG
46729849 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* * *
46729914 GGTTTTCAATTTCTGTCTTTCAAAAAAA-AAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGA
66 GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
46729977 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
131 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
*
46730012 AATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
*
46730077 GTTTTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
66 GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
46730142 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
131 CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * * *
46730177 AGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
46730242 ATTTTTCAATTTCTGCATTTCAAAAAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 GTTTTTCAATTTCTGCCTTTC---------AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
46730307 GCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTTC--AAA
122 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * * *** * ** *
46730349 ATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTATTTTCAATTTCT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
46730412 GTTTT
66 GTTTT
46730417 CAAAAAATCA
Statistics
Matches: 369, Mismatches: 25, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
163 89 0.24
164 30 0.08
165 117 0.32
170 27 0.07
172 34 0.09
174 72 0.20
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (165 bp):
AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
Found at i:46730360 original size:72 final size:73
Alignment explanation
Indices: 46730273--46730779 Score: 397
Period size: 72 Copynumber: 6.5 Consensus size: 73
46730263 AAAAAAAAAA
*
46730273 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
46730338 CTGTTTTC
66 CTGTTTTC
* * ** ** *
46730346 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
46730410 CTGTTTTC
66 CTGTTTTC
* * * ** *
46730418 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
46730483 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
46730494 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* * *
46730559 AATTTATATTTTTTA
61 AA-TT-TCTGTTTTC
* * *
46730574 AAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCAA
**
46730638 AATCTGTTTTTC
63 TTTCTG-TTTTC
* * **
46730650 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
46730715 GCTATTTTCAATTTCTGTTTTTTTTTC
52 GGTATTTTCAATTTCTG-----TTTTC
46730742 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
46730780 TTTTTAATTT
Statistics
Matches: 344, Mismatches: 55, Indels: 61
0.75 0.12 0.13
Matches are distributed among these distances:
72 64 0.19
73 33 0.10
75 23 0.07
76 8 0.02
77 50 0.15
78 4 0.01
79 55 0.16
80 5 0.01
81 8 0.02
82 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:46730650 original size:14 final size:13
Alignment explanation
Indices: 46730631--46730666 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
46730621 TGTCGAGGTA
46730631 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
46730644 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
46730658 TTTTCAAAA
1 TTTTCAAAA
46730667 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:46730724 original size:88 final size:88
Alignment explanation
Indices: 46730575--46730736 Score: 227
Period size: 88 Copynumber: 1.8 Consensus size: 88
46730565 TATTTTTTAA
* * * *
46730575 AAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAA
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
46730640 TCTGTTTTTCAAATTCTGTTTTC
66 TCTGTTTTTCAAATTCTGTTTTC
* * * *
46730663 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAT
1 AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAA
*
46730727 TTCTGTTTTT
65 ATCTGTTTTT
46730737 TTTTCAAAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.02
88 63 0.98
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (88 bp):
AAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAA
TCTGTTTTTCAAATTCTGTTTTC
Found at i:46730797 original size:30 final size:30
Alignment explanation
Indices: 46730761--46730822 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
46730751 CAACTCATAT
46730761 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
46730791 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
46730821 TG
1 TG
46730823 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:46730923 original size:254 final size:249
Alignment explanation
Indices: 46730412--46730990 Score: 746
Period size: 254 Copynumber: 2.3 Consensus size: 249
46730402 TTCAATTTCT
* * *
46730412 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
46730477 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
* * *
46730538 CACACACTGAGGTATTTTTTCAATTTATATTTTTTAAAAAAATCAACTCACATTGCGAGATGTGA
131 CACACACTGAGGTATCTTTTCAATTTATAGTTTTTAAAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * **
46730603 GTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
196 GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
46730657 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
46730721 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
46730786 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCT-GTTTTT-CAAAAATCAACTCATATTG
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATAGTTTTTAAAAAAATCAACTCACATTG
*
46730847 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 CGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
*
46730911 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTCGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
46730975 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
46730991 AATGTCTGTT
Statistics
Matches: 289, Mismatches: 30, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 145 0.50
255 10 0.03
256 7 0.02
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (249 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATAGTTTTTAAAAAAATCAACTCACATTGCGAGAGGTGA
GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:46731656 original size:16 final size:16
Alignment explanation
Indices: 46731637--46731671 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
46731627 AACCTAACCC
*
46731637 AAAAAAAA-ACAAAGA
1 AAAAAAAAGAAAAAGA
46731652 AAAAAAAAGAAAAAGA
1 AAAAAAAAGAAAAAGA
46731668 AAAA
1 AAAA
46731672 CCTACCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAAGA
Found at i:46731681 original size:16 final size:17
Alignment explanation
Indices: 46731662--46731702 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 17
46731652 AAAAAAAAGA
46731662 AAAAGAAAAACCT-A-CC
1 AAAA-AAAAACCTAACCC
46731678 -AAAAAAAACCTAACCC
1 AAAAAAAAACCTAACCC
46731694 AAAAAAAAA
1 AAAAAAAAA
46731703 AAGAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 8 0.36
15 4 0.18
16 2 0.09
17 8 0.36
ACGTcount: A:0.71, C:0.22, G:0.02, T:0.05
Consensus pattern (17 bp):
AAAAAAAAACCTAACCC
Found at i:46731684 original size:14 final size:16
Alignment explanation
Indices: 46731667--46731701 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
46731657 AAAGAAAAAG
46731667 AAAAACCT-A-CCAAA
1 AAAAACCTAACCCAAA
46731681 AAAAACCTAACCCAAA
1 AAAAACCTAACCCAAA
46731697 AAAAA
1 AAAAA
46731702 AAAGAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.42
15 1 0.05
16 10 0.53
ACGTcount: A:0.69, C:0.26, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACCTAACCCAAA
Found at i:46747852 original size:2 final size:2
Alignment explanation
Indices: 46747845--46747877 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
46747835 ACTTTGACTA
46747845 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
46747878 TCTTGTGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:46749751 original size:19 final size:19
Alignment explanation
Indices: 46749716--46749849 Score: 186
Period size: 19 Copynumber: 7.2 Consensus size: 19
46749706 AGATTACAAG
46749716 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
*
46749737 ATTATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
46749756 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
* *
46749773 ATCATATCTAATATCGCAT
1 ATCATATCTAAGATTGCAT
46749792 ATCATATCTAAGATTGC--
1 ATCATATCTAAGATTGCAT
*
46749809 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
46749828 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
46749847 ATC
1 ATC
46749850 CTTAAAGATT
Statistics
Matches: 101, Mismatches: 8, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
17 31 0.31
19 62 0.61
20 1 0.01
21 7 0.07
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:46749799 original size:55 final size:54
Alignment explanation
Indices: 46749716--46749849 Score: 171
Period size: 55 Copynumber: 2.4 Consensus size: 54
46749706 AGATTACAAG
* *
46749716 ATCATATCTTCAAGATTGCATATTATATCTAAGATTGCATATCATATCTAAGATTG-T
1 ATCATATC-T-AAGATCGCATATCATATCTAAGATTGC--ATCATATCTAAGATTGAT
* *
46749773 ATCATATCTAATATCGCATATCATATCTAAGATTGCATCATATCTAATATTGCAT
1 ATCATATCTAAGATCGCATATCATATCTAAGATTGCATCATATCTAAGATTG-AT
*
46749828 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATCGCATATC
46749850 CTTAAAGATT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
53 15 0.22
55 45 0.65
56 1 0.01
57 8 0.12
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (54 bp):
ATCATATCTAAGATCGCATATCATATCTAAGATTGCATCATATCTAAGATTGAT
Found at i:46749844 original size:36 final size:36
Alignment explanation
Indices: 46749716--46749846 Score: 190
Period size: 36 Copynumber: 3.5 Consensus size: 36
46749706 AGATTACAAG
* *
46749716 ATCATATCTTCAAGATTGCATATTATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGC--ATCATATCTAATATTGCAT
* *
46749756 ATCATATCTAAGATTGTATCATATCTAATATCGCAT
1 ATCATATCTAAGATTGCATCATATCTAATATTGCAT
46749792 ATCATATCTAAGATTGCATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCATCATATCTAATATTGCAT
46749828 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
46749847 ATCCTTAAAG
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
36 69 0.81
38 7 0.08
39 1 0.01
40 8 0.09
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (36 bp):
ATCATATCTAAGATTGCATCATATCTAATATTGCAT
Found at i:46750676 original size:41 final size:41
Alignment explanation
Indices: 46750631--46750768 Score: 122
Period size: 41 Copynumber: 3.3 Consensus size: 41
46750621 GATCGCTCCG
46750631 CTACTGCTTAGGGATAAGATCTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGATAAGATCTGCAAATTTAACCTGTTACC
* **** * *
46750672 CTACTGCTTAGGGGATTAAG-GC-GGGTCTTCGAA-CTGCT-CC
1 CTACTGCTTA-GGGA-TAAGATCTGCAAATT-TAACCTGTTACC
*
46750712 ACTACTGCTTAGAGAGATAAGATCTGCAAATTTAACCTATTACC
1 -CTACTGCTTAG-G-GATAAGATCTGCAAATTTAACCTGTTACC
46750756 CTACTGCTTAGGG
1 CTACTGCTTAGGG
46750769 GATTAAGGCG
Statistics
Matches: 72, Mismatches: 15, Indels: 20
0.67 0.14 0.19
Matches are distributed among these distances:
40 3 0.04
41 33 0.46
42 13 0.18
43 21 0.29
44 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (41 bp):
CTACTGCTTAGGGATAAGATCTGCAAATTTAACCTGTTACC
Found at i:46750731 original size:84 final size:84
Alignment explanation
Indices: 46750615--46751278 Score: 1056
Period size: 84 Copynumber: 8.0 Consensus size: 84
46750605 AAGGTGCATC
* *
46750615 GTCTTTGATC-GCTCCGCTACTGCTTA-GG-GATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
46750677 GCTTAGGGGATTAAGGCGG
66 GCTTAGGGGATTAAGGCGA
* * *
46750696 GTCTTCGAACTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAAATTTAACCTATTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
46750761 GCTTAGGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
* * **
46750780 GTCGTTGTCGATCTGCTCCTCTACTGCTTAAGGAGATAAGATCT----A-CGAACCTGTTACCCT
1 GTC--T-TCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCT
46750840 ACTGCTTAGGGGATTAAGGCGA
63 ACTGCTTAGGGGATTAAGGCGA
* ** *
46750862 GTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTATAAATTTAACCTGTTACCCTACC
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
46750927 GCTTAGGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
* * *
46750946 GTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATTTTCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
46751011 GCTTAGGGGATTAAGGTGA
66 GCTTAGGGGATTAAGGCGA
46751030 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
46751095 GCTTAGGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
* *
46751114 GTCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
46751179 GCTTAGGGGATTAAGGCGA
66 GCTTAGGGGATTAAGGCGA
46751198 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
1 GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
*
46751263 ACTTAGGGGATTAAGG
66 GCTTAGGGGATTAAGG
46751279 TGCTGAATTT
Statistics
Matches: 537, Mismatches: 35, Indels: 19
0.91 0.06 0.03
Matches are distributed among these distances:
79 34 0.06
80 1 0.00
81 8 0.01
82 52 0.10
83 3 0.01
84 405 0.75
86 1 0.00
87 33 0.06
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (84 bp):
GTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACCCTACT
GCTTAGGGGATTAAGGCGA
Found at i:46751011 original size:43 final size:42
Alignment explanation
Indices: 46750963--46751269 Score: 116
Period size: 43 Copynumber: 7.3 Consensus size: 42
46750953 ATCTGCTCCA
*
46750963 CTACTGCTTAGAGAGATAAGATTTTCAAATTTAACCTGTTACC
1 CTACTGCTTAG-GAGATAAGATATTCAAATTTAACCTGTTACC
* * * ** * *
46751006 CTACTGCTTAGGGGATTAAGGTGAGTC---TTCGATCTGCT-CC
1 CTACTGCTTAGGAGA-TAAGAT-ATTCAAATTTAACCTGTTACC
* *
46751046 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTA-GGAGATAAGATATTCAAATTTAACCTGTTACC
* ** * ** * **
46751090 CTACTGCTTAGGGGATTAAGGCGAGTC---TTCGATCTACT-CC
1 CTACTGCTTAGGAGA-TAA-GATATTCAAATTTAACCTGTTACC
* * *
46751130 ACTACTACTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTA-GGAGATAAGATATTCAAATTTAACCTGTTACC
* ** * ** * *
46751174 CTACTGCTTAGGGGATTAAGGCGAGTC---TTCGATCTGCT-CC
1 CTACTGCTTAGGAGA-TAA-GATATTCAAATTTAACCTGTTACC
* *
46751214 ACTACTGCTTAGGGAGATAAGATCTGCAAATTTAACCTGTTACC
1 -CTACTGCTTA-GGAGATAAGATATTCAAATTTAACCTGTTACC
*
46751258 CTACTACTTAGG
1 CTACTGCTTAGG
46751270 GGATTAAGGT
Statistics
Matches: 178, Mismatches: 62, Indels: 49
0.62 0.21 0.17
Matches are distributed among these distances:
40 11 0.06
41 60 0.34
42 25 0.14
43 70 0.39
44 12 0.07
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (42 bp):
CTACTGCTTAGGAGATAAGATATTCAAATTTAACCTGTTACC
Found at i:46752242 original size:8 final size:8
Alignment explanation
Indices: 46752229--46752286 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
46752219 GCCTCTCCAT
46752229 TTTTTTTC
1 TTTTTTTC
46752237 -TTTTTTC
1 TTTTTTTC
46752244 TATTTTTTC
1 T-TTTTTTC
46752253 --TTTTTC
1 TTTTTTTC
46752259 TTTTTTTC
1 TTTTTTTC
*
46752267 TCTTTTTC
1 TTTTTTTC
*
46752275 TCTTTTTC
1 TTTTTTTC
46752283 TTTT
1 TTTT
46752287 CTTTTCTCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 6 0.14
7 7 0.16
8 24 0.55
9 7 0.16
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTTC
Found at i:46752251 original size:16 final size:15
Alignment explanation
Indices: 46752229--46752286 Score: 82
Period size: 16 Copynumber: 3.8 Consensus size: 15
46752219 GCCTCTCCAT
46752229 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTTC
46752244 TATTTTTTC-TTTTTC
1 T-TTTTTTCTTTTTTC
46752259 TTTTTTTCTCTTTTTC
1 TTTTTTTCT-TTTTTC
*
46752275 TCTTTTTCTTTT
1 TTTTTTTCTTTT
46752287 CTTTTCTCCT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
14 7 0.18
15 11 0.28
16 21 0.54
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTTCTTTTTTC
Found at i:46752259 original size:22 final size:23
Alignment explanation
Indices: 46752231--46752286 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 23
46752221 CTCTCCATTT
46752231 TTTTTCTTTTTTCTATTTTT-TC
1 TTTTTCTTTTTTCTATTTTTCTC
*
46752253 TTTTTCTTTTTTTCTCTTTTTCTC
1 TTTTTC-TTTTTTCTATTTTTCTC
46752277 TTTTTCTTTT
1 TTTTTCTTTT
46752287 CTTTTCTCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
22 6 0.19
23 17 0.55
24 8 0.26
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (23 bp):
TTTTTCTTTTTTCTATTTTTCTC
Found at i:46752265 original size:30 final size:28
Alignment explanation
Indices: 46752229--46752301 Score: 92
Period size: 30 Copynumber: 2.5 Consensus size: 28
46752219 GCCTCTCCAT
*
46752229 TTTTTTTCTTTTTTCTATTTTTTCTTTTTC
1 TTTTTTTCTTTTTTCT-CTTTTTC-TTTTC
46752259 TTTTTTTCTCTTTTTCTCTTTTTCTTTTC
1 TTTTTTTCT-TTTTTCTCTTTTTCTTTTC
* *
46752288 TTTTCTCCTTTTTT
1 TTTTTTTCTTTTTT
46752302 TTGAAATAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
28 5 0.13
29 12 0.31
30 15 0.38
31 7 0.18
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTTTCTTTTTTCTCTTTTTCTTTTC
Found at i:46752302 original size:16 final size:15
Alignment explanation
Indices: 46752229--46752302 Score: 67
Period size: 16 Copynumber: 4.5 Consensus size: 15
46752219 GCCTCTCCAT
*
46752229 TTTTTTTCTTTTTTC
1 TTTTTTTCTTTTTCC
*
46752244 TATTTTTTCTTTTTCT
1 T-TTTTTTCTTTTTCC
46752260 TTTTTTCTCTTTTTCTC
1 TTTTTT-TCTTTTTC-C
46752277 TTTTTCTTTTCTTTTCTCC
1 --TTT-TTTTCTTTT-TCC
46752296 TTTTTTT
1 TTTTTTT
46752303 TGAAATAGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
15 6 0.12
16 25 0.51
17 3 0.06
19 10 0.20
20 5 0.10
ACGTcount: A:0.01, C:0.18, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTTCTTTTTCC
Found at i:46758246 original size:92 final size:92
Alignment explanation
Indices: 46758089--46758257 Score: 304
Period size: 92 Copynumber: 1.8 Consensus size: 92
46758079 GGATGGTTGA
*
46758089 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
46758154 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
46758181 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAACGTCCGAACTCGTTGAGT
46758245 TGAGTCCGAGTTC
65 TGAGTCCGAGTTC
46758258 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 61 0.82
93 13 0.18
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTATGGATGCGAACGTCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46758261 original size:45 final size:46
Alignment explanation
Indices: 46758092--46758262 Score: 210
Period size: 45 Copynumber: 3.7 Consensus size: 46
46758082 TGGTTGAGCA
*
46758092 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC-TATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
46758137 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
46758182 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
*
46758230 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46758263 GGGGCGGGTT
Statistics
Matches: 108, Mismatches: 8, Indels: 20
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 63 0.58
47 29 0.27
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:46765945 original size:40 final size:40
Alignment explanation
Indices: 46765864--46766065 Score: 338
Period size: 40 Copynumber: 5.1 Consensus size: 40
46765854 TGGATGATAA
46765864 CCGGGCTAAGTCCCGAAGGCATTTGT--GAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
46765902 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
46765942 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
46765982 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
46766022 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
46766062 CCGG
1 CCGG
46766066 TTAAATCCGA
Statistics
Matches: 157, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
38 26 0.17
39 2 0.01
40 129 0.82
ACGTcount: A:0.22, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:46773940 original size:40 final size:40
Alignment explanation
Indices: 46773882--46774085 Score: 320
Period size: 40 Copynumber: 5.1 Consensus size: 40
46773872 TGGATGATAA
*
46773882 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
46773922 CCAGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
46773962 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
46774002 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
46774042 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
46774082 CCGG
1 CCGG
46774086 TTAAATCCTG
Statistics
Matches: 152, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 2 0.01
40 150 0.99
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.