Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 160 of 328
Found at i:46777213 original size:93 final size:93
Alignment explanation
Indices: 46777054--46777224 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
46777044 GGATGGTTAA
* * * *
46777054 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCATTGAGT
46777119 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
46777147 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCATTGAGT
46777212 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46777225 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACCTATAGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46777227 original size:46 final size:46
Alignment explanation
Indices: 46777058--46777229 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
46777048 GGTTAAGCAT
* * * *
46777058 CCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
* * * *
46777104 CCGAACTCATTGAGTTGAGTCCGAGTT--CGT-GAGATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAAC---GC
*
46777149 ATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
*
46777197 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46777230 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 57 0.55
47 25 0.24
48 2 0.02
49 2 0.02
50 5 0.05
51 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGC
Found at i:46781038 original size:22 final size:21
Alignment explanation
Indices: 46781008--46781073 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
46780998 TATAAATTAA
46781008 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
46781030 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
46781051 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
46781070 ATCT
1 ATCT
46781074 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:46781060 original size:19 final size:19
Alignment explanation
Indices: 46781025--46781086 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
46781015 AGATTACAAG
46781025 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
46781046 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
46781065 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
46781084 ATC
1 ATC
46781087 CTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:46788961 original size:6 final size:6
Alignment explanation
Indices: 46788952--46788995 Score: 52
Period size: 6 Copynumber: 7.3 Consensus size: 6
46788942 ATATATATGA
* * * *
46788952 TTTGAT TTTGAT TTTGAT TTTGAC TTTAAT TTTAAT TTTAAT TT
1 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TT
46788996 CTGCTACTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (6 bp):
TTTGAT
Found at i:46789726 original size:99 final size:99
Alignment explanation
Indices: 46789612--46789817 Score: 358
Period size: 99 Copynumber: 2.1 Consensus size: 99
46789602 ATATATTTAA
* *
46789612 TTTTTAGAATTTATAAAGTAATTTTTATTTTCAAAACATATGAATTCCATGTGGGACTTTTTTAT
1 TTTTTA-AATTTATAAAGTAATTTTTATTTTCAAAACATATGAATTCCATGTAGGACTTTTTGAT
* *
46789677 TGAAGTGCCACGTGGTACATTCTTATTTAACTGAT
65 TGAAGTGACACATGGTACATTCTTATTTAACTGAT
46789712 TTTTTAAATTTATAAAGTAATTTTTATTTTCAAAACATATGAATTCCATGTAGGACTTTTTGATT
1 TTTTTAAATTTATAAAGTAATTTTTATTTTCAAAACATATGAATTCCATGTAGGACTTTTTGATT
*
46789777 GAAGTGACATATGGTACATTCTTATTTAACTGAT
66 GAAGTGACACATGGTACATTCTTATTTAACTGAT
46789811 TTTTTAA
1 TTTTTAA
46789818 TAATTGTGAA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
99 95 0.94
100 6 0.06
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.46
Consensus pattern (99 bp):
TTTTTAAATTTATAAAGTAATTTTTATTTTCAAAACATATGAATTCCATGTAGGACTTTTTGATT
GAAGTGACACATGGTACATTCTTATTTAACTGAT
Found at i:46790780 original size:2 final size:2
Alignment explanation
Indices: 46790773--46790818 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
46790763 AACACCAGGA
46790773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46790815 AT AT
1 AT AT
46790819 TAGAATTGCT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46792368 original size:31 final size:31
Alignment explanation
Indices: 46792326--46792439 Score: 147
Period size: 31 Copynumber: 3.5 Consensus size: 31
46792316 CCTTTTCGTA
46792326 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
46792363 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
46792395 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
46792426 TTTCATGTTTCATA
1 TTTCATATTTCATA
46792440 TTTCATAATA
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
31 43 0.58
32 1 0.01
33 1 0.01
37 1 0.01
38 28 0.38
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:46792368 original size:38 final size:38
Alignment explanation
Indices: 46792303--46792465 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
46792293 TCAATCATGC
* * *
46792303 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATGTTTCATATTTCATAAT
46792342 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
*
46792380 ACTGGGCCGAAG-C----C-T-TTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
46792411 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
46792449 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
46792466 ACTGTAAACG
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 27 0.24
32 2 0.02
33 1 0.01
36 1 0.01
37 2 0.02
38 68 0.61
39 11 0.10
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
Found at i:46792437 original size:69 final size:69
Alignment explanation
Indices: 46792326--46792465 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
46792316 CCTTTTCGTA
46792326 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
46792391 GCCT
66 GCCT
*
46792395 TTTCATATTTCATATTACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
46792460 GCCT
66 GCCT
46792464 TT
1 TT
46792466 ACTGTAAACG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:46792703 original size:24 final size:24
Alignment explanation
Indices: 46792657--46792751 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
46792647 GCTTTATCAT
*
46792657 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
46792682 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
46792706 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
46792729 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
46792752 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:46792736 original size:47 final size:49
Alignment explanation
Indices: 46792657--46792750 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
46792647 GCTTTATCAT
*
46792657 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
46792706 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
46792751 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:46792827 original size:20 final size:20
Alignment explanation
Indices: 46792802--46792861 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
46792792 TATGATTACC
46792802 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
46792822 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
46792842 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
46792862 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:46792936 original size:25 final size:25
Alignment explanation
Indices: 46792904--46792951 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46792894 ATACATAAAC
* * *
46792904 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
46792929 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
46792952 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:46800724 original size:31 final size:31
Alignment explanation
Indices: 46800682--46800795 Score: 147
Period size: 31 Copynumber: 3.5 Consensus size: 31
46800672 CCTTTTCGTA
46800682 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAATACTGGGCCGAAG-C----C-T
46800719 GTTTCATATTTCATAATACTGGGCCGAAGCCT
1 -TTTCATATTTCATAATACTGGGCCGAAGCCT
*
46800751 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
*
46800782 TTTCATGTTTCATA
1 TTTCATATTTCATA
46800796 TTTCATAATA
Statistics
Matches: 74, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
31 43 0.58
32 1 0.01
33 1 0.01
37 1 0.01
38 28 0.38
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:46800724 original size:38 final size:38
Alignment explanation
Indices: 46800659--46800821 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
46800649 TCAATCATGC
* * *
46800659 ACTGGGCCGTAGCCCTTTTCGTATTTCATATTTCATAAT
1 ACTGGGCCGAAG-CCTTTTCATGTTTCATATTTCATAAT
46800698 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
*
46800736 ACTGGGCCGAAG-C----C-T-TTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
46800767 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
1 ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
46800805 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
46800822 ACTGTAAACG
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 27 0.24
32 2 0.02
33 1 0.01
36 1 0.01
37 2 0.02
38 68 0.61
39 11 0.10
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAAT
Found at i:46800793 original size:69 final size:69
Alignment explanation
Indices: 46800682--46800821 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
46800672 CCTTTTCGTA
46800682 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
46800747 GCCT
66 GCCT
*
46800751 TTTCATATTTCATATTACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
1 TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
46800816 GCCT
66 GCCT
46800820 TT
1 TT
46800822 ACTGTAAACG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (69 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCTTTTCATGTTTCATATTTCATAATACTGGGCCGAA
GCCT
Found at i:46801059 original size:24 final size:24
Alignment explanation
Indices: 46801013--46801107 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
46801003 GCTTTATCAT
*
46801013 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
46801038 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTTA
46801062 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
46801085 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
46801108 TCACTTCCTC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 25 0.39
24 26 0.41
25 13 0.20
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:46801092 original size:47 final size:49
Alignment explanation
Indices: 46801013--46801106 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
46801003 GCTTTATCAT
*
46801013 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGG-CATAAGCCCTTTCA
46801062 ATAACTGG-GGCATAAGCC-CTTTT-ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTT
46801107 TTCACTTCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 2 0.05
47 19 0.45
48 9 0.21
49 12 0.29
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (49 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTCA
Found at i:46801183 original size:20 final size:20
Alignment explanation
Indices: 46801158--46801217 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
46801148 TATGATTACC
46801158 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
46801178 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
46801198 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
46801218 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:46801292 original size:25 final size:25
Alignment explanation
Indices: 46801260--46801307 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
46801250 ATACATAAAC
* * *
46801260 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
46801285 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
46801308 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:46804054 original size:30 final size:30
Alignment explanation
Indices: 46804018--46804077 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
46804008 TAACAACACT
*
46804018 GGGTAGTCTTCCCATCCCCTACTGACTAGA
1 GGGTAGTCTTCCCATCCCCTACCGACTAGA
46804048 GGGTAGTCTTCCCATCCCCTACCGACTAGA
1 GGGTAGTCTTCCCATCCCCTACCGACTAGA
46804078 CAAGCTATCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.20, C:0.35, G:0.20, T:0.25
Consensus pattern (30 bp):
GGGTAGTCTTCCCATCCCCTACCGACTAGA
Found at i:46812567 original size:30 final size:29
Alignment explanation
Indices: 46812532--46812589 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
46812522 CCAAAATCAT
46812532 ATTTTGGT-AAAATTACAATTTTGCCCCTAA
1 ATTTT-GTCAAAATTA-AATTTTGCCCCTAA
* *
46812562 ATTTTGTCAAAATTATATTTTTCCCCTA
1 ATTTTGTCAAAATTAAATTTTGCCCCTA
46812590 GGCTCGTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 13 0.52
30 12 0.48
ACGTcount: A:0.31, C:0.17, G:0.07, T:0.45
Consensus pattern (29 bp):
ATTTTGTCAAAATTAAATTTTGCCCCTAA
Found at i:46813819 original size:21 final size:21
Alignment explanation
Indices: 46813793--46813844 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
46813783 AAATGACAGT
* * *
46813793 GAAACAACATCAAAATGGTAG
1 GAAACAACAGCAAAATAGTAA
*
46813814 GAAACAATAGCAAAATAGTAA
1 GAAACAACAGCAAAATAGTAA
*
46813835 TAAACAACAG
1 GAAACAACAG
46813845 TGAAAAAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.58, C:0.13, G:0.15, T:0.13
Consensus pattern (21 bp):
GAAACAACAGCAAAATAGTAA
Found at i:46814696 original size:23 final size:24
Alignment explanation
Indices: 46814650--46814697 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
46814640 AAATATTAAA
*
46814650 ATATATAATTTTATAACTTTATTT
1 ATATATAATTTTATAACTTAATTT
46814674 ATATAT-ATTTTATAA-TTAAATTT
1 ATATATAATTTTATAACTT-AATTT
46814697 A
1 A
46814698 AATAAAATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 2 0.09
23 14 0.64
24 6 0.27
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
ATATATAATTTTATAACTTAATTT
Found at i:46816169 original size:28 final size:28
Alignment explanation
Indices: 46816129--46816185 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
46816119 AACCCGTAAC
46816129 ACTAAAGAATATATATATTAGATGTAGA
1 ACTAAAGAATATATATATTAGATGTAGA
46816157 ACTAAAGAATATATATATTAGATGTAGA
1 ACTAAAGAATATATATATTAGATGTAGA
46816185 A
1 A
46816186 AAATAAATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.51, C:0.04, G:0.14, T:0.32
Consensus pattern (28 bp):
ACTAAAGAATATATATATTAGATGTAGA
Found at i:46817130 original size:18 final size:18
Alignment explanation
Indices: 46817098--46817133 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
46817088 GATTGGGAGA
46817098 ATAAAGAACAAAGAAAAT
1 ATAAAGAACAAAGAAAAT
46817116 ATAAA-AACAATAGAAAAT
1 ATAAAGAACAA-AGAAAAT
46817134 GTATTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.06, G:0.08, T:0.14
Consensus pattern (18 bp):
ATAAAGAACAAAGAAAAT
Found at i:46831892 original size:29 final size:29
Alignment explanation
Indices: 46831859--46832018 Score: 180
Period size: 29 Copynumber: 5.5 Consensus size: 29
46831849 GTGACGAGAT
46831859 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46831888 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46831917 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
* ** * ***
46831946 CGGCACTGGGTGTGCGA-GCTCGAAGGGTA
1 TGGCACTAAGTGTGC-ATGCTGGAAATATA
* ** * *
46831975 TGGCACTATGTGTGCGGGCT-TAAATCACA
1 TGGCACTAAGTGTGCATGCTGGAAAT-ATA
46832004 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
46832019 GAAATCGAGT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
28 2 0.02
29 108 0.97
30 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:46838443 original size:49 final size:49
Alignment explanation
Indices: 46838272--46838496 Score: 261
Period size: 49 Copynumber: 4.5 Consensus size: 49
46838262 TGAGGTCGCA
* * * * *
46838272 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * ** **
46838323 TGTGTAGTACTAAGTGCAGGCTACTACGTATATCAAATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
*
46838373 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* ***
46838422 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
46838471 TGTGTAGTACTATGTGCAGGATACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
46838497 TGCGTACCAG
Statistics
Matches: 148, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 75 0.51
50 42 0.28
51 31 0.21
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:46846557 original size:18 final size:18
Alignment explanation
Indices: 46846528--46846589 Score: 90
Period size: 18 Copynumber: 3.5 Consensus size: 18
46846518 TTTTGGGTCC
*
46846528 TGTGGG-CCACACGGGCA
1 TGTGGGTCCACACGGGCG
*
46846545 TGTGGGTCCACACGGGTG
1 TGTGGGTCCACACGGGCG
46846563 TGTGGGTCCACACGGGCG
1 TGTGGGTCCACACGGGCG
*
46846581 TATGGGTCC
1 TGTGGGTCC
46846590 GCCCAGGCTG
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
17 6 0.15
18 34 0.85
ACGTcount: A:0.13, C:0.26, G:0.42, T:0.19
Consensus pattern (18 bp):
TGTGGGTCCACACGGGCG
Found at i:46852415 original size:21 final size:21
Alignment explanation
Indices: 46852349--46852415 Score: 82
Period size: 21 Copynumber: 3.2 Consensus size: 21
46852339 GTCTAGGCCG
*
46852349 TGTGGAGGCC-TACATGCCCA
1 TGTGGAGGCCACACATGCCCA
*
46852369 TGTGAAGGCCACACATGCCCA
1 TGTGGAGGCCACACATGCCCA
** *
46852390 TGTGGAGGGGACACATGCCCG
1 TGTGGAGGCCACACATGCCCA
46852411 TGTGG
1 TGTGG
46852416 TTAGCCCGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
20 9 0.22
21 31 0.77
ACGTcount: A:0.21, C:0.27, G:0.34, T:0.18
Consensus pattern (21 bp):
TGTGGAGGCCACACATGCCCA
Found at i:46853971 original size:2 final size:2
Alignment explanation
Indices: 46853964--46853993 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
46853954 ACACCTACAA
46853964 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46853994 TTCCATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:46856933 original size:6 final size:6
Alignment explanation
Indices: 46856922--46856961 Score: 62
Period size: 6 Copynumber: 6.5 Consensus size: 6
46856912 AAATCGTGTC
*
46856922 AAAAAG AAAAAG AAAAAG AAAAAA AAAAAG AAAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAAG AAA
46856962 GAGATGATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
6 25 0.81
7 6 0.19
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:46864888 original size:15 final size:15
Alignment explanation
Indices: 46864868--46864924 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
46864858 CGATGAATTT
46864868 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
46864883 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
46864898 ATTGAATTTATATTG
1 ATTGAATTTATATTG
46864913 ATTGAA-TTATAT
1 ATTGAATTTATAT
46864925 AATATACATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:46865368 original size:21 final size:23
Alignment explanation
Indices: 46865308--46865384 Score: 104
Period size: 23 Copynumber: 3.4 Consensus size: 23
46865298 AGGCAGTTTA
*
46865308 TGTGTCATATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
46865331 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* **
46865354 TGTGTCGT-TTT-AGGCACTTTA
1 TGTGTCGTATTTCAGGCACCTCG
46865375 TGTGTCGTAT
1 TGTGTCGTAT
46865385 ACTGATCAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
21 15 0.31
22 4 0.08
23 30 0.61
ACGTcount: A:0.14, C:0.21, G:0.25, T:0.40
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:46868387 original size:35 final size:35
Alignment explanation
Indices: 46868280--46868397 Score: 137
Period size: 35 Copynumber: 3.4 Consensus size: 35
46868270 CAAGGTTCCT
* *
46868280 TATATCATCATATATGGCCAAATATACAAGTACAA
1 TATAACATCATATGTGGCCAAATATACAAGTACAA
* * * * * **
46868315 TAAAACATCACATGTAGTCAAATATTCAAGTTTAA
1 TATAACATCATATGTGGCCAAATATACAAGTACAA
*
46868350 TATAACATCATATGTGGCCAAAGATACAAGTACAA
1 TATAACATCATATGTGGCCAAATATACAAGTACAA
*
46868385 TATATCATCATAT
1 TATAACATCATAT
46868398 ATGTACATAC
Statistics
Matches: 65, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 65 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (35 bp):
TATAACATCATATGTGGCCAAATATACAAGTACAA
Found at i:46875850 original size:22 final size:22
Alignment explanation
Indices: 46875825--46875873 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
46875815 ATAACAGAAT
* *
46875825 ATATCATAGCATATCAGATTTC
1 ATATCAGAGCATATCAGATATC
* *
46875847 ATATCGGAGCATATCATATATC
1 ATATCAGAGCATATCAGATATC
46875869 ATATC
1 ATATC
46875874 GTATCGTATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35
Consensus pattern (22 bp):
ATATCAGAGCATATCAGATATC
Found at i:46875864 original size:27 final size:27
Alignment explanation
Indices: 46875829--46875905 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 27
46875819 CAGAATATAT
*
46875829 CATAGCATATCAGATTTCATATCGGAG
1 CATATCATATCAGATTTCATATCGGAG
* * * * *
46875856 CATATCATAT-ATCATATCGTATCGTAT
1 CATATCATATCA-GATTTCATATCGGAG
* *
46875883 CATATCATATCTGTTTTCATATC
1 CATATCATATCAGATTTCATATC
46875906 ATGTTGTAAC
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
26 1 0.03
27 36 0.97
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.39
Consensus pattern (27 bp):
CATATCATATCAGATTTCATATCGGAG
Found at i:46875874 original size:22 final size:22
Alignment explanation
Indices: 46875832--46875874 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
46875822 AATATATCAT
*
46875832 AGCATATCAGATTTCATATCGG
1 AGCATATCAGATATCATATCGG
*
46875854 AGCATATCATATATCATATCG
1 AGCATATCAGATATCATATCG
46875875 TATCGTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (22 bp):
AGCATATCAGATATCATATCGG
Found at i:46875883 original size:15 final size:15
Alignment explanation
Indices: 46875865--46875940 Score: 53
Period size: 15 Copynumber: 4.8 Consensus size: 15
46875855 GCATATCATA
*
46875865 TATCATATCGTATCG
1 TATCATATCATATCG
46875880 TATCATATCATATCTG
1 TATCATATCATATC-G
* * *
46875896 TTTTCATATCATGTTG
1 -TATCATATCATATCG
* * *
46875912 TAACATGTTTCATATCT
1 TATCA--TATCATATCG
46875929 TATCATATCATA
1 TATCATATCATA
46875941 ACTCATGCCA
Statistics
Matches: 45, Mismatches: 12, Indels: 8
0.69 0.18 0.12
Matches are distributed among these distances:
15 22 0.49
16 2 0.04
17 21 0.47
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (15 bp):
TATCATATCATATCG
Found at i:46875974 original size:22 final size:22
Alignment explanation
Indices: 46875921--46875976 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
46875911 GTAACATGTT
* *
46875921 TCATATCTTATCATATCATAAC
1 TCATATCATGTCATATCATAAC
** *
46875943 TCATGCCATGTCATATCATATC
1 TCATATCATGTCATATCATAAC
46875965 TCATATCATGTC
1 TCATATCATGTC
46875977 CTACCCCAAC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.39
Consensus pattern (22 bp):
TCATATCATGTCATATCATAAC
Found at i:46877084 original size:16 final size:17
Alignment explanation
Indices: 46877053--46877085 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46877043 AAAAAAACTC
*
46877053 AAAGAAAAGTGAAAGAA
1 AAAGAAAAGAGAAAGAA
46877070 AAAGAAAA-AGAAAGAA
1 AAAGAAAAGAGAAAGAA
46877086 CAAAAGGAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAGAAAAGAGAAAGAA
Found at i:46879136 original size:19 final size:20
Alignment explanation
Indices: 46879112--46879156 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
46879102 TTGAGATGGA
46879112 ATGATATTCAACTTTGTGG-
1 ATGATATTCAACTTTGTGGT
* *
46879131 ATGATATTTAACTTTTTGGT
1 ATGATATTCAACTTTGTGGT
46879151 ATGATA
1 ATGATA
46879157 GGGACATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.29, C:0.07, G:0.18, T:0.47
Consensus pattern (20 bp):
ATGATATTCAACTTTGTGGT
Found at i:46885177 original size:191 final size:191
Alignment explanation
Indices: 46884853--46885233 Score: 591
Period size: 191 Copynumber: 2.0 Consensus size: 191
46884843 ATAATCTCTC
*
46884853 TTACACGAAATAGTCATACCTTTTTCCCTCCTATGACCAAGTTGTCTCCACTTCAAACGAGTCGA
1 TTACACGAAATAGTCATACCTTTTTCCCTCCTATGACCAAGTTGTCTCCACTTCAAACGAGTCCA
* **** * * *
46884918 GTTTAACTCTTTAACAGTTGTGGGACGTCTGGTTTCACCGATCACCGTTGATCCTTCCAAAACAT
66 GTTCAACTCTTTAACAGACAAGGGACGTCCGGTTTCACAGATCACCATTGATCCTTCCAAAACAT
* *
46884983 AAAGACTTTTAATATTTTTACCTTTCATAGAAAAGAAGAGCCTCATGAGATACCTTAATGT
131 AAAGACTTTCAATATTTTTACCTTTCATAAAAAAGAAGAGCCTCATGAGATACCTTAATGT
* * **
46885044 TTACACGAAATAGTCATACCTTTTTCTCTCCTATGACCACGTTGTCTCTGCTTCAAACGAGTCCA
1 TTACACGAAATAGTCATACCTTTTTCCCTCCTATGACCAAGTTGTCTCCACTTCAAACGAGTCCA
*
46885109 GTTCAACTCTTTAACAGACAAGGGACGTCCGGTTTCACAGGTCACCATTGATCCTTCCAAAACAT
66 GTTCAACTCTTTAACAGACAAGGGACGTCCGGTTTCACAGATCACCATTGATCCTTCCAAAACAT
* * *
46885174 AAAGACTTTCAATCTTTTTACCTTTTATAAAAAAGAAGAGCCTGATGAGATACCTTAATG
131 AAAGACTTTCAATATTTTTACCTTTCATAAAAAAGAAGAGCCTCATGAGATACCTTAATG
46885234 CCGCTTGAAT
Statistics
Matches: 171, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
191 171 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.32
Consensus pattern (191 bp):
TTACACGAAATAGTCATACCTTTTTCCCTCCTATGACCAAGTTGTCTCCACTTCAAACGAGTCCA
GTTCAACTCTTTAACAGACAAGGGACGTCCGGTTTCACAGATCACCATTGATCCTTCCAAAACAT
AAAGACTTTCAATATTTTTACCTTTCATAAAAAAGAAGAGCCTCATGAGATACCTTAATGT
Found at i:46889406 original size:24 final size:25
Alignment explanation
Indices: 46889356--46889406 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 25
46889346 TTAGTGTCAC
* * *
46889356 GGGTTAATCTATTATTAACTCATTT
1 GGGTTAATCTAATACTAACTCAGTT
*
46889381 GGGTTAATC-AATACTAACTTAGTT
1 GGGTTAATCTAATACTAACTCAGTT
46889405 GG
1 GG
46889407 AAAAATTTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (25 bp):
GGGTTAATCTAATACTAACTCAGTT
Found at i:46890289 original size:21 final size:21
Alignment explanation
Indices: 46890265--46890308 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
46890255 AAATCTCTAC
*
46890265 AATTTCTCCCTAAAGTTCTCA
1 AATTTCTCACTAAAGTTCTCA
* * *
46890286 AATTTTTCATTAAATTTCTCA
1 AATTTCTCACTAAAGTTCTCA
46890307 AA
1 AA
46890309 CCTCTTTATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.02, T:0.43
Consensus pattern (21 bp):
AATTTCTCACTAAAGTTCTCA
Found at i:46895428 original size:46 final size:46
Alignment explanation
Indices: 46895250--46895508 Score: 165
Period size: 46 Copynumber: 5.5 Consensus size: 46
46895240 TTTGTGCGCT
* * * *
46895250 AGTGTAAGA-AATGTCTGGGACATGCATTGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGA-GATGA-AGCC
** * * * * * *
46895296 AGTGTAAGACCATGTCTAAGACATGGCAACGAC-ATTGTGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGA-AGCC
* *
46895344 AGTGTAAGA-CATGTATGGGGCATGCATCGGCCT-CGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCGG-CTACGAGATG-AAGCC
* * *
46895390 AGTGTAAGA-CATGTCTGGGACATGCATTGGCTATGAGATG-AGTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGAAGCC
* * *
46895434 AGTGTAAGACCACGTTTGGGACATGACATCAGC-ACGGAGATGCGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGCTAC-GAGAT--GA-AGCC
*
46895484 AGTGTAAAACCATGTCTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
46895509 GCGTTAGACT
Statistics
Matches: 163, Mismatches: 35, Indels: 26
0.73 0.16 0.12
Matches are distributed among these distances:
44 12 0.07
45 16 0.10
46 64 0.39
47 24 0.15
48 22 0.13
50 25 0.15
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGAAGCC
Found at i:46896761 original size:21 final size:21
Alignment explanation
Indices: 46896733--46896787 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
46896723 ATGACTGCAA
46896733 GGGCGTGTTGCCCTTCCACAC
1 GGGCGTGTTGCCCTTCCACAC
*
46896754 GGGTGTGTTGCCCTTCCACAC
1 GGGCGTGTTGCCCTTCCACAC
46896775 GGGCGTG-TGCCCT
1 GGGCGTGTTGCCCT
46896788 GTTTCAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 6 0.19
21 26 0.81
ACGTcount: A:0.07, C:0.35, G:0.33, T:0.25
Consensus pattern (21 bp):
GGGCGTGTTGCCCTTCCACAC
Found at i:46897120 original size:30 final size:30
Alignment explanation
Indices: 46897086--46897154 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
46897076 ATGGGGCAGA
* *
46897086 CCGTGTGTCGCACACGGCTTAGACACATGC
1 CCGTGTGTCACACACGGCCTAGACACATGC
*
46897116 CCGTGTGTCACACATGGCCTAGACACATGC
1 CCGTGTGTCACACACGGCCTAGACACATGC
46897146 CCGTGTGTC
1 CCGTGTGTC
46897155 TAACCTTGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.19, C:0.33, G:0.26, T:0.22
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAGACACATGC
Found at i:46898351 original size:45 final size:45
Alignment explanation
Indices: 46898287--46898373 Score: 165
Period size: 45 Copynumber: 1.9 Consensus size: 45
46898277 CCAAAACATG
46898287 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCGGA
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCGGA
*
46898332 TGTCACATATATCATGAACTCAGATCACAACTCAATGAGTTC
1 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTC
46898374 AGATTACATA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (45 bp):
TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCGGA
Found at i:46898375 original size:21 final size:21
Alignment explanation
Indices: 46898306--46898377 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
46898296 TATCATGAAC
*
46898306 TCAGACCACAACTCAATGAGT
1 TCAGATCACAACTCAATGAGT
* * **
46898327 TCGGATGTCACATATATC-ATGAAC
1 TCAGA--TCACA-A-CTCAATGAGT
46898351 TCAGATCACAACTCAATGAGT
1 TCAGATCACAACTCAATGAGT
46898372 TCAGAT
1 TCAGAT
46898378 TACATATGTA
Statistics
Matches: 37, Mismatches: 9, Indels: 10
0.66 0.16 0.18
Matches are distributed among these distances:
20 2 0.05
21 15 0.41
22 5 0.14
23 4 0.11
24 9 0.24
25 2 0.05
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (21 bp):
TCAGATCACAACTCAATGAGT
Found at i:46911698 original size:125 final size:125
Alignment explanation
Indices: 46911407--46911908 Score: 650
Period size: 125 Copynumber: 4.0 Consensus size: 125
46911397 CTAAGGCCAA
* * * * * *
46911407 TCATGAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTGTTTTTAGA-CATTTTGCTAACATT
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCT-TTTTCA-ATAATTTTGCTGACAGT
* * *
46911471 GCATCCTGCTTGAAGTGTTTTTGACACTATTTGTTTAGAAACATCTTCTGAAAATTATTTTT
64 GCATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTT
* ** * *
46911533 TCAAGAACTACTGTAGAAAAAGAGCGTTTACGTAGGAGCTTTTTCCAATAATTTTACTGACAGTG
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTT-CAATAATTTTGCTGACAGTG
* * * * *
46911598 CATCCTGCTTGAGGCATTTTTGACACTATTTGTTCAG-AACTTCTTCTCATAATTATCTTT
65 CATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTT
* * ** * *
46911658 TCATGAACTAATGTAGAAAAAGAGCGTCCACGTGGTAGCTTTTTTCCCTAATTTTGCTGACAATA
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGC-TTTTTCAATAATTTTGCTGACAGTG
* *
46911723 CATCCTGCTTGAAGCGTTTTTGGCACTATTTGTTTAGAAACATCTTCTCAAAATTATTTTT
65 CATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTT
* * * *
46911784 T-AGGAACTACTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTTCTATATTTTTGCTGACAGTGC
1 TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAATAATTTTGCTGACAGTGC
* *
46911848 ATCCTGCTTGAAGCGTTTTTGACACTATTTATTCAGAAACGTCTTCTCAAAATTATTTTT
66 ATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTT
46911908 T
1 T
46911909 TAGTGTAAAA
Statistics
Matches: 322, Mismatches: 50, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
124 78 0.24
125 138 0.43
126 106 0.33
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (125 bp):
TCATGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTCAATAATTTTGCTGACAGTGC
ATCCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTT
Found at i:46911999 original size:28 final size:27
Alignment explanation
Indices: 46911967--46912048 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 27
46911957 TTTAAAAAAA
46911967 CTAAACCCTAATTTAATTAAATTTAACC
1 CTAAACCCTAATTTAATT-AATTTAACC
*
46911995 CTAAACCCTAATTTAATTTATTTAAAACC
1 CTAAACCCTAATTTAATTAATTT--AACC
*
46912024 CTAGAACCCTAATTTAGTTAATTTA
1 CTA-AACCCTAATTTAATTAATTTA
46912049 TTTAAAAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
27 4 0.08
28 19 0.40
29 7 0.15
30 18 0.38
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (27 bp):
CTAAACCCTAATTTAATTAATTTAACC
Found at i:46912021 original size:58 final size:57
Alignment explanation
Indices: 46911967--46912149 Score: 190
Period size: 58 Copynumber: 3.1 Consensus size: 57
46911957 TTTAAAAAAA
*
46911967 CTAAACCCTAATTTAATTAAATTTAACCCTAAACCCTAATTTAATTTATTTAAAACC
1 CTAAACCCTAATTTAATTAAATTTAATCCTAAACCCTAATTTAATTTATTTAAAACC
* * *
46912024 CTAGAACCCTAATTTAGTTAATTTATTTAAAAATCGTAAACCCCAATTTAATTTATTTAAAACC
1 CTA-AACCCTAATTTAATTAA---ATTT---AATCCTAAACCCTAATTTAATTTATTTAAAACC
* * **
46912088 CCAAACCCTAATTTACTT-AATTT-ATTTTATAACCCTAAATTCTAATTTATTTAAAACC
1 CTAAACCCTAATTTAATTAAATTTAATCCTA-AACCCT-AATT-TAATTTATTTAAAACC
46912146 CTAA
1 CTAA
46912150 TTTAATTTAT
Statistics
Matches: 106, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
55 4 0.04
56 5 0.05
57 7 0.07
58 35 0.33
59 4 0.04
61 4 0.04
62 1 0.01
63 14 0.13
64 32 0.30
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (57 bp):
CTAAACCCTAATTTAATTAAATTTAATCCTAAACCCTAATTTAATTTATTTAAAACC
Found at i:46912050 original size:34 final size:32
Alignment explanation
Indices: 46911967--46912138 Score: 150
Period size: 34 Copynumber: 5.5 Consensus size: 32
46911957 TTTAAAAAAA
46911967 CTAAACCCTAATTTAATTAA---ATTT--AACC
1 CTAAACCCTAATTT-ATTAATTTATTTAAAACC
46911995 CTAAACCCTAA--T-TTAATTTATTTAAAACC
1 CTAAACCCTAATTTATTAATTTATTTAAAACC
*
46912024 CTAGAACCCTAATTTAGTTAATTTATTTAAAAATC
1 CTA-AACCCTAATTTA-TTAATTTATTT-AAAACC
* *
46912059 GTAAACCCCAA--T-TTAATTTATTTAAAACC
1 CTAAACCCTAATTTATTAATTTATTTAAAACC
* *
46912088 CCAAACCCTAATTTACTTAATTTATTTTATAACC
1 CTAAACCCTAATTTA-TTAATTTA-TTTAAAACC
**
46912122 CTAAATTCTAATTTATT
1 CTAAACCCTAATTTATT
46912139 TAAAACCCTA
Statistics
Matches: 117, Mismatches: 11, Indels: 27
0.75 0.07 0.17
Matches are distributed among these distances:
24 4 0.03
26 1 0.01
27 4 0.03
28 11 0.09
29 20 0.17
30 19 0.16
31 1 0.01
32 2 0.02
33 10 0.09
34 38 0.32
35 7 0.06
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.40
Consensus pattern (32 bp):
CTAAACCCTAATTTATTAATTTATTTAAAACC
Found at i:46912072 original size:64 final size:63
Alignment explanation
Indices: 46911996--46912114 Score: 202
Period size: 64 Copynumber: 1.9 Consensus size: 63
46911986 AATTTAACCC
* * *
46911996 TAAACCCTAATTTAATTTATTTAAAACCCTAGAACCCTAATTTAGTTAATTTATTTAAAAATCG
1 TAAACCCCAATTTAATTTATTTAAAACCCCA-AACCCTAATTTACTTAATTTATTTAAAAATCG
46912060 TAAACCCCAATTTAATTTATTTAAAACCCCAAACCCTAATTTACTTAATTTATTT
1 TAAACCCCAATTTAATTTATTTAAAACCCCAAACCCTAATTTACTTAATTTATTT
46912115 TATAACCCTA
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
63 23 0.44
64 29 0.56
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (63 bp):
TAAACCCCAATTTAATTTATTTAAAACCCCAAACCCTAATTTACTTAATTTATTTAAAAATCG
Found at i:46912095 original size:29 final size:29
Alignment explanation
Indices: 46911967--46912149 Score: 151
Period size: 29 Copynumber: 6.1 Consensus size: 29
46911957 TTTAAAAAAA
*
46911967 CTAAACCCTAATTTAATTAAATTT--AACC
1 CTAAACCCTAATTTAATT-TATTTAAAACC
46911995 CTAAACCCTAATTTAATTTATTTAAAACC
1 CTAAACCCTAATTTAATTTATTTAAAACC
*
46912024 CTAGAACCCTAATTTAGTTAATTTATTTAAAAATC
1 CTA-AACCCTAA--T--TTAATTTATTT-AAAACC
* *
46912059 GTAAACCCCAATTTAATTTATTTAAAACC
1 CTAAACCCTAATTTAATTTATTTAAAACC
* * * **
46912088 CCAAACCCTAATTTACTTAATTT---ATT
1 CTAAACCCTAATTTAATTTATTTAAAACC
*
46912114 TTATAACCCTAAATTCTAATTTATTTAAAACC
1 CTA-AACCCT-AATT-TAATTTATTTAAAACC
46912146 CTAA
1 CTAA
46912150 TTTAATTTAT
Statistics
Matches: 122, Mismatches: 19, Indels: 25
0.73 0.11 0.15
Matches are distributed among these distances:
26 2 0.02
27 10 0.08
28 22 0.18
29 38 0.31
30 19 0.16
31 1 0.01
32 5 0.04
34 18 0.15
35 7 0.06
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (29 bp):
CTAAACCCTAATTTAATTTATTTAAAACC
Found at i:46912135 original size:63 final size:64
Alignment explanation
Indices: 46911990--46912140 Score: 207
Period size: 63 Copynumber: 2.4 Consensus size: 64
46911980 TAATTAAATT
* *
46911990 TAACCCTAAACCCTAATTTAATTTATTTAAAACCCTAGAACCCTAATTTAGTTAATTTATTTAA
1 TAACCCTAAACCCTAATTTAATTTATTTAAAACCCCAGAACCCTAATTTACTTAATTTATTTAA
* * * * *
46912054 AAATCGTAAACCCCAATTTAATTTATTTAAAACCCCA-AACCCTAATTTACTTAATTTATTTTA
1 TAACCCTAAACCCTAATTTAATTTATTTAAAACCCCAGAACCCTAATTTACTTAATTTATTTAA
**
46912117 TAACCCTAAATTCTAATTT-ATTTA
1 TAACCCTAAACCCTAATTTAATTTA
46912141 AAACCCTAAT
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
62 5 0.07
63 37 0.50
64 32 0.43
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (64 bp):
TAACCCTAAACCCTAATTTAATTTATTTAAAACCCCAGAACCCTAATTTACTTAATTTATTTAA
Found at i:46912158 original size:22 final size:23
Alignment explanation
Indices: 46912104--46912172 Score: 95
Period size: 22 Copynumber: 3.0 Consensus size: 23
46912094 CCTAATTTAC
46912104 TTAATTTATTTTATAACCCTAAAT
1 TTAATTTA-TTTATAACCCTAAAT
*
46912128 TCTAATTTATTTAAAACCCT-AAT
1 T-TAATTTATTTATAACCCTAAAT
*
46912151 TTAATTTATTTATAACCTTAAA
1 TTAATTTATTTATAACCCTAAA
46912173 AACCCTAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
22 16 0.40
23 6 0.15
24 11 0.28
25 7 0.17
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.48
Consensus pattern (23 bp):
TTAATTTATTTATAACCCTAAAT
Found at i:46912215 original size:82 final size:80
Alignment explanation
Indices: 46912061--46912216 Score: 213
Period size: 82 Copynumber: 1.9 Consensus size: 80
46912051 TAAAAATCGT
** * * *
46912061 AAACCCCAATTTAATTTATTTAAAACCCCAAACCCTAATTTACTTAATTTATTTTATAACCCTAA
1 AAACCCCAATTTAATTTATTTAAAACCAAAAACCCTAATTTACTTAATTTATTTAAAAACCATAA
**
46912126 ATTCTAATTTATTTA
66 ACCCTAATTTATTTA
* *
46912141 AAACCCTAATTTAATTTATTTATAACCTTAAAAACCCTAATTTACTTAATTTATTTAAAAACCAT
1 AAACCCCAATTTAATTTATTTAAAACC--AAAAACCCTAATTTACTTAATTTATTTAAAAACCAT
46912206 AAACCCTAATT
64 AAACCCTAATT
46912217 AAATAATTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
80 25 0.38
82 40 0.62
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.40
Consensus pattern (80 bp):
AAACCCCAATTTAATTTATTTAAAACCAAAAACCCTAATTTACTTAATTTATTTAAAAACCATAA
ACCCTAATTTATTTA
Found at i:46912271 original size:145 final size:141
Alignment explanation
Indices: 46911997--46912271 Score: 306
Period size: 145 Copynumber: 1.9 Consensus size: 141
46911987 ATTTAACCCT
* * * *
46911997 AAACCCTAATTTAATTTATTTAAAACCCTAGAACCCTAATTTAGTTAATTTATTTAAAAATCGTA
1 AAACCCTAATTTAATTTATTTAAAACCCTAAAACCCTAATTTACTTAATTTATTTAAAAACCATA
* * * * *
46912062 AACCCCAATTTAATTTATTTAAAACCCCAAACCCTAATTTACTTAATTTATTTTATAACCCTAAA
66 AACCCCAATTTAATTTATTTAAAA---CAAACACTAATATACCTAATTTATTTTAAAACACTAAA
46912127 TTCTAATTTATTTA
128 TTCTAATTTATTTA
* *
46912141 AAACCCTAATTTAATTTATTTATAACCTTAAAAACCCTAATTTACTTAATTTATTTAAAAACCAT
1 AAACCCTAATTTAATTTATTTAAAACCCT-AAAACCCTAATTTACTTAATTTATTTAAAAACCAT
* *
46912206 AAACCCTAATTAAATAATTT-TTATAAAA-TAACACTAA-AT-CCTAATTTATTTTTAAAATCTA
65 AAACCCCAATT---TAATTTATT-TAAAACAAACACTAATATACCTAATTTA-TTTTAAAA-C-A
46912267 CTAAA
123 CTAAA
46912272 ACTATAAACC
Statistics
Matches: 110, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
142 8 0.07
143 8 0.07
144 35 0.32
145 46 0.42
147 2 0.02
148 11 0.10
ACGTcount: A:0.43, C:0.17, G:0.01, T:0.40
Consensus pattern (141 bp):
AAACCCTAATTTAATTTATTTAAAACCCTAAAACCCTAATTTACTTAATTTATTTAAAAACCATA
AACCCCAATTTAATTTATTTAAAACAAACACTAATATACCTAATTTATTTTAAAACACTAAATTC
TAATTTATTTA
Found at i:46913152 original size:22 final size:22
Alignment explanation
Indices: 46913127--46913170 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
46913117 ATTATGGGAG
46913127 TAGGCCGTTTTTATAAAAACGC
1 TAGGCCGTTTTTATAAAAACGC
*
46913149 TAGGTCGTTTTTATAAAAACGC
1 TAGGCCGTTTTTATAAAAACGC
46913171 ATCCAGCTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (22 bp):
TAGGCCGTTTTTATAAAAACGC
Found at i:46915077 original size:48 final size:48
Alignment explanation
Indices: 46915022--46915158 Score: 195
Period size: 48 Copynumber: 2.9 Consensus size: 48
46915012 ATCGATATGT
* *
46915022 GATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATAC
* **
46915070 GATCCCATGTAAGACCATGT-TCGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCATCGACATAC
* *
46915118 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
46915159 CTACCATATG
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 78 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGACATAC
Found at i:46915085 original size:91 final size:93
Alignment explanation
Indices: 46914930--46915158 Score: 252
Period size: 91 Copynumber: 2.5 Consensus size: 93
46914920 GGGTTATGTA
* * * * * **
46914930 TGATCCCATGTAAGAACATATATAGGACATGGCTTTGGCATTGATATGTAATTTCATGTAAGACC
1 TGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCATCGATACG-AATCCCATGTAAGACC
*
46914995 ATAGCT-GGG-C-T-ATCGGTATCGATATG
65 AT-GCTCGGGACATGATCGGCATCGATATG
*
46915021 TGATCCCATGTAAGACCATGTCTAGGACATGGCATTGGCATCGACCTACG-ATCCCATGTAAGAC
1 TGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCATCGA--TACGAATCCCATGTAAGAC
* *
46915085 CATGTTCGGGACATGGCATTGGCATCGATATG
64 CATGCTCGGGACAT-G-ATCGGCATCGATATG
* *
46915117 TGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 TGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCATC
46915159 CTACCATATG
Statistics
Matches: 116, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
90 2 0.02
91 57 0.49
92 1 0.01
93 4 0.03
96 52 0.45
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (93 bp):
TGATCCCATGTAAGACCATATCTAGGACATGGCATTGGCATCGATACGAATCCCATGTAAGACCA
TGCTCGGGACATGATCGGCATCGATATG
Found at i:46917432 original size:41 final size:40
Alignment explanation
Indices: 46917387--46917544 Score: 167
Period size: 41 Copynumber: 3.9 Consensus size: 40
46917377 GATTCTTAGT
*
46917387 ACTGGCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACC
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGA-C
* * * * *
46917428 ACTGGCTCGAAGGCCCTTCGGAACTAAGTTCGG-TTATGAC
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTA-GAC
* * *
46917468 ACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATTAG-C
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGG--ATTAGAC
* *
46917509 TCTGGCTCAAAGGCCCTTCGAAACCAAGCTCGGATT
1 ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATT
46917545 TAAACCCTGA
Statistics
Matches: 99, Mismatches: 14, Indels: 10
0.80 0.11 0.08
Matches are distributed among these distances:
39 3 0.03
40 34 0.34
41 58 0.59
42 1 0.01
43 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTGGCTCAAAAGCCCTTCGAAACCAAGCTCGGATTAGAC
Found at i:46929786 original size:40 final size:40
Alignment explanation
Indices: 46929727--46929895 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
46929717 CGGGACTTTA
* * *
46929727 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
46929767 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
46929807 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
46929847 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
46929887 CCCGGATAT
1 CCCGGATAT
46929896 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:46933124 original size:48 final size:48
Alignment explanation
Indices: 46933053--46933192 Score: 208
Period size: 48 Copynumber: 2.9 Consensus size: 48
46933043 TAGGGTTATG
*
46933053 TACGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGACC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGACA
*
46933101 TACGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGATA
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGACA
** ** * *
46933149 TGTGATCCCATGTAAGACCAAATCTGGGATATGGCATTGGCATC
1 TACGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATC
46933193 CTACCATGTG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (48 bp):
TACGATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCGACA
Found at i:46935267 original size:40 final size:39
Alignment explanation
Indices: 46935223--46935404 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
46935213 GTTCAAAACA
* * ** * *
46935223 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
46935263 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
46935303 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
46935342 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
46935381 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
46935405 CTCGAACATT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.69
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:46935334 original size:39 final size:39
Alignment explanation
Indices: 46935253--46935404 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
46935243 TATGGTAACC
* * * *
46935253 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
46935293 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
46935332 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
46935371 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
46935405 CTCGAACATT
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:46939846 original size:40 final size:40
Alignment explanation
Indices: 46939809--46939994 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
46939799 GCTACTCGTT
*
46939809 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
46939849 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
46939889 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
46939929 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46939970 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46939995 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 117 0.89
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46946966 original size:40 final size:39
Alignment explanation
Indices: 46946911--46947118 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
46946901 TGAATGATAC
* * *
46946911 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TTATAT
* *
46946951 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTATAT
*
46946991 CCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTTATAT
* * *
46947031 CTGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGT--TATAT
* * **
46947071 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTTATAT
46947111 CC-GGCTAA
1 CCGGGCTAA
46947119 ATTCTGAAGA
Statistics
Matches: 146, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 6 0.04
40 136 0.93
41 2 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTTATAT
Found at i:46947108 original size:80 final size:80
Alignment explanation
Indices: 46946911--46947118 Score: 258
Period size: 80 Copynumber: 2.6 Consensus size: 80
46946901 TGAATGATAC
* * * *
46946911 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
* *** *
46946976 TGCGAGTTGTTATAT
66 TGCAAGTTACCAAAT
* * * *
46946991 CCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTATATCTGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTC
46947055 GTGCAAGTTACCAAAT
65 GTGCAAGTTACCAAAT
* *
46947071 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAA
46947119 ATTCTGAAGA
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 8 0.07
80 97 0.90
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCAAGTTACCAAAT
Found at i:46951211 original size:40 final size:40
Alignment explanation
Indices: 46951174--46951357 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
46951164 GCTACTCGTT
*
46951174 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
46951214 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
46951254 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
46951294 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
46951335 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
46951358 ACATCATTCG
Statistics
Matches: 130, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:46960152 original size:44 final size:43
Alignment explanation
Indices: 46960086--46960242 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
46960076 TGTGTTATCG
* *
46960086 TGTAAGACCACGTAT-GGAACATTGGCATCA-ACTTATGATTTACG
1 TGTAAGACCACGTCTAGG-ACATTGGCATCATA-TT-TGATTTACA
* * * *
46960130 TGTAAGACCACGTTTGGGACATTGTCATTATATTTGATTT-CA
1 TGTAAGACCACGTCTAGGACATTGGCATCATATTTGATTTACA
* *
46960172 TGTAAGACC-CTGTCTAGGTCAGTGGCATCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTAGGACATTGGCATC-ATATTTGATTTACA
46960215 TGTAAGACCACGTCTAGGACATTGGCAT
1 TGTAAGACCACGTCTAGGACATTGGCAT
46960243 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 24 0.25
43 40 0.42
44 27 0.28
45 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTAGGACATTGGCATCATATTTGATTTACA
Found at i:46960405 original size:21 final size:21
Alignment explanation
Indices: 46960379--46960422 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
46960369 GAGGATAAGG
46960379 TAAGTACAAAGCATATGTATA
1 TAAGTACAAAGCATATGTATA
46960400 TAAGTACAAAGCATATGTATA
1 TAAGTACAAAGCATATGTATA
46960421 TA
1 TA
46960423 TGTGAACTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.48, C:0.09, G:0.14, T:0.30
Consensus pattern (21 bp):
TAAGTACAAAGCATATGTATA
Found at i:46972642 original size:19 final size:21
Alignment explanation
Indices: 46972618--46972671 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
46972608 TGACTTATTT
46972618 TTAAAATCATTTTGA-TGTG-
1 TTAAAATCATTTTGATTGTGA
* *
46972637 TTAAAATGATTTT-ATTTTGA
1 TTAAAATCATTTTGATTGTGA
*
46972657 TTTAAATCATTTTGA
1 TTAAAATCATTTTGA
46972672 ACTTGGTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.04
19 15 0.54
20 11 0.39
21 1 0.04
ACGTcount: A:0.33, C:0.04, G:0.11, T:0.52
Consensus pattern (21 bp):
TTAAAATCATTTTGATTGTGA
Found at i:46972686 original size:21 final size:20
Alignment explanation
Indices: 46972618--46972686 Score: 54
Period size: 21 Copynumber: 3.5 Consensus size: 20
46972608 TGACTTATTT
46972618 TTAAAATCATTTTG-A-TGTG
1 TTAAAATCATTTTGAATTG-G
* * *
46972637 TTAAAATGATTTT-ATTTTGA
1 TTAAAATCATTTTGA-ATTGG
*
46972657 TTTAAATCATTTTGAACTTGG
1 TTAAAATCATTTTGAA-TTGG
46972678 TTAAAATCA
1 TTAAAATCA
46972687 ATTTCACTTG
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
19 12 0.32
20 11 0.30
21 14 0.38
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.48
Consensus pattern (20 bp):
TTAAAATCATTTTGAATTGG
Found at i:46979903 original size:27 final size:27
Alignment explanation
Indices: 46979841--46980206 Score: 277
Period size: 27 Copynumber: 13.7 Consensus size: 27
46979831 CCAAACTATT
* * *
46979841 TAAAATTATCGAAATACCC-CCATTTG
1 TAAAATTACCGAAATACCCTCGAATTG
* *
46979867 AAAAATTACCGAAATACCTTCGAATTG
1 TAAAATTACCGAAATACCCTCGAATTG
*
46979894 TAAAATTACCGAAATACCCTC-AGTTTG
1 TAAAATTACCGAAATACCCTCGA-ATTG
* * *
46979921 TAAAATCACTGAAAAACCCTCGAATTG
1 TAAAATTACCGAAATACCCTCGAATTG
** * *
46979948 TAAAATTATTGAAATACCCTAG-TTTG
1 TAAAATTACCGAAATACCCTCGAATTG
* * *
46979974 TAAAATTATCGAAATA-CTTC-AGATTA
1 TAAAATTACCGAAATACCCTCGA-ATTG
*
46980000 TAAAATTACCGAAATACCC-CTGATTTG
1 TAAAATTACCGAAATACCCTC-GAATTG
* * * *
46980027 TAAAATCACCAAAATACCCTTGGATTG
1 TAAAATTACCGAAATACCCTCGAATTG
* * *
46980054 TAAAATTATC-TAATACCC-CTGATTTG
1 TAAAATTACCGAAATACCCTC-GAATTG
46980080 TAAAATTACCGAAATACCCTC-AGATTG
1 TAAAATTACCGAAATACCCTCGA-ATTG
** *
46980107 TAAAATTAATGAAATACTCC-C-AATTTT
1 TAAAATTACCGAAATAC-CCTCGAA-TTG
* * *
46980134 TAAAATTACCGAAATACCCCCGATTTA
1 TAAAATTACCGAAATACCCTCGAATTG
* * * *
46980161 TAAAATTACTGAAATACCCTTGTAGTG
1 TAAAATTACCGAAATACCCTCGAATTG
*
46980188 TAAAATTACCAAAATACCC
1 TAAAATTACCGAAATACCC
46980207 CTATAGGGTA
Statistics
Matches: 267, Mismatches: 56, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
25 2 0.01
26 77 0.29
27 182 0.68
28 6 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGAATTG
Found at i:46979950 original size:54 final size:53
Alignment explanation
Indices: 46979841--46980206 Score: 337
Period size: 54 Copynumber: 6.8 Consensus size: 53
46979831 CCAAACTATT
* * *
46979841 TAAAATTATCGAAATACCCCCA-TTTGAAAAATTACCGAAATACCTTCGAATTG
1 TAAAATTACCGAAATA-CCCCAGTTTGTAAAATTACCGAAATACCCTCGAATTG
* * *
46979894 TAAAATTACCGAAATACCCTCAGTTTGTAAAATCACTGAAAAACCCTCGAATTG
1 TAAAATTACCGAAATACCC-CAGTTTGTAAAATTACCGAAATACCCTCGAATTG
** * * * *
46979948 TAAAATTATTGAAATACCCTAGTTTGTAAAATTATCGAAATA-CTTC-AGATTA
1 TAAAATTACCGAAATACCCCAGTTTGTAAAATTACCGAAATACCCTCGA-ATTG
* * * * *
46980000 TAAAATTACCGAAATACCCCTGATTTGTAAAATCACCAAAATACCCTTGGATTG
1 TAAAATTACCGAAATACCCCAG-TTTGTAAAATTACCGAAATACCCTCGAATTG
* * *
46980054 TAAAATTATC-TAATACCCCTGATTTGTAAAATTACCGAAATACCCTC-AGATTG
1 TAAAATTACCGAAATACCCCAG-TTTGTAAAATTACCGAAATACCCTCGA-ATTG
** * * * * *
46980107 TAAAATTAATGAAATACTCCCAATTTTTAAAATTACCGAAATACCCCCGATTTA
1 TAAAATTACCGAAATAC-CCCAGTTTGTAAAATTACCGAAATACCCTCGAATTG
* ** * *
46980161 TAAAATTACTGAAATACCCTTGTAGTGTAAAATTACCAAAATACCC
1 TAAAATTACCGAAATACCCCAGT-TTGTAAAATTACCGAAATACCC
46980207 CTATAGGGTA
Statistics
Matches: 254, Mismatches: 48, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
51 1 0.00
52 27 0.11
53 100 0.39
54 122 0.48
55 4 0.02
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
TAAAATTACCGAAATACCCCAGTTTGTAAAATTACCGAAATACCCTCGAATTG
Found at i:46980217 original size:27 final size:27
Alignment explanation
Indices: 46980161--46980220 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
46980151 CCCCGATTTA
** * * *
46980161 TAAAATTACTGAAATACCCTTGTAGTG
1 TAAAATTACCAAAATACCCCTATAGGG
46980188 TAAAATTACCAAAATACCCCTATAGGG
1 TAAAATTACCAAAATACCCCTATAGGG
46980215 TAAAAT
1 TAAAAT
46980221 GAATGTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCCTATAGGG
Found at i:46980672 original size:27 final size:27
Alignment explanation
Indices: 46980624--46980701 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
46980614 TATGTTGATT
* * *
46980624 ATGGCTTTGTGCAAATCGTATTT-TCCA
1 ATGGCTATGTGCCAATCATATTTAT-CA
*
46980651 ATGGCTATGTGCCTATCATATTTATCA
1 ATGGCTATGTGCCAATCATATTTATCA
* * * *
46980678 ATGACTCTGTGTCGATCATATTTA
1 ATGGCTATGTGCCAATCATATTTA
46980702 CCCATGACTG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 41 0.98
28 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (27 bp):
ATGGCTATGTGCCAATCATATTTATCA
Found at i:46981065 original size:27 final size:27
Alignment explanation
Indices: 46980998--46981065 Score: 66
Period size: 27 Copynumber: 2.6 Consensus size: 27
46980988 TGTTACTGAG
* * ** *
46980998 ATGGGC-TAGGCCCAATTGATTCTGTT
1 ATGGGCTTTGGCCCAAATGATAATGTA
* *
46981024 ATGGGCTGTGACCCAAATGATAATGTA
1 ATGGGCTTTGGCCCAAATGATAATGTA
46981051 ATGGGCTTTGGCCCA
1 ATGGGCTTTGGCCCA
46981066 CTTATGCTCT
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
26 6 0.19
27 26 0.81
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (27 bp):
ATGGGCTTTGGCCCAAATGATAATGTA
Found at i:46981787 original size:20 final size:21
Alignment explanation
Indices: 46981764--46981818 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
46981754 GATATCGCTT
* *
46981764 TAAAACTATCGATACTT-TTA
1 TAAAAATATCGATACTTGTGA
46981784 TAAAAATATCGATACTTGTGA
1 TAAAAATATCGATACTTGTGA
46981805 -AAAAATATCGATAC
1 TAAAAATATCGATAC
46981819 CAATATGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (21 bp):
TAAAAATATCGATACTTGTGA
Found at i:46983762 original size:50 final size:50
Alignment explanation
Indices: 46983703--46983803 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
46983693 TTTATTGTGC
46983703 ATAAATATCACCCTTTTAAGTACACAATATAAAAAATATCTCATGCATTT
1 ATAAATATCACCCTTTTAAGTACACAATATAAAAAATATCTCATGCATTT
46983753 ATAAATATCACCCTTTTAAGTACACAATATAAAAAATATCTCATGCATTT
1 ATAAATATCACCCTTTTAAGTACACAATATAAAAAATATCTCATGCATTT
46983803 A
1 A
46983804 AATCATACAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.34
Consensus pattern (50 bp):
ATAAATATCACCCTTTTAAGTACACAATATAAAAAATATCTCATGCATTT
Found at i:46986740 original size:40 final size:40
Alignment explanation
Indices: 46986696--46986920 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
46986686 GCTACTCGTT
*
46986696 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
46986736 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* *
46986776 CAAATGCCTTCGGATCGTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
46986816 CAAATGCCTTC-GATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * *
46986855 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
46986896 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGCCCGGA
46986921 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
39 40 0.24
40 116 0.69
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:46986868 original size:79 final size:78
Alignment explanation
Indices: 46986696--46986920 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 78
46986686 GCTACTCGTT
*
46986696 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGATCATAGTCCGGATT-TAGTAACTCGCACAAATGCCTTC--GACTTAACCC
46986759 GGATTTAGTAACTCGCA
62 GGATTTAGTAACTCGCA
* **
46986776 CAAATGCCTTCGGATCGTAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGATCTTAGTCCGGA
1 CAAATGCCTTCGGATCATAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGA-CTTAACCCGGA
46986841 TTTAGTAACTCGCA
65 TTTAGTAACTCGCA
* * * * * *
46986855 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGATCATAGTCCGGATTTAGTAAC-TCGCACAAATGCCTTC--GACTTAACCCG
46986919 GA
63 GA
46986921 CATCATTCGA
Statistics
Matches: 129, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
78 2 0.02
79 63 0.49
80 60 0.47
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGATCATAGTCCGGATTTAGTAACTCGCACAAATGCCTTCGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:46994936 original size:80 final size:80
Alignment explanation
Indices: 46994845--46995049 Score: 281
Period size: 80 Copynumber: 2.6 Consensus size: 80
46994835 GGGACATAGC
* *
46994845 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATG
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
46994910 CCTTC-AGATCTTAGT
66 CCTTCGA-ATCTTAGT
* * * *
46994925 CCGGATTTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCACGAAT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCACAAAT
46994989 GCCTTCGAATCTTAGT
65 GCCTTCGAATCTTAGT
* * *
46995005 CCGGATATAGTCACTTAGCACAAA-GCCTTTGGGACTTAGCCCGGA
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
46995050 CATCATTCGA
Statistics
Matches: 109, Mismatches: 12, Indels: 8
0.84 0.09 0.06
Matches are distributed among these distances:
79 3 0.03
80 95 0.87
81 11 0.10
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (80 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATG
CCTTCGAATCTTAGT
Found at i:46995043 original size:40 final size:40
Alignment explanation
Indices: 46994824--46995049 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
46994814 GCTACTCGTT
*
46994824 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATT-TAGTAACTCGCA
*
46994864 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
* * *
46994904 CAAATGCCTTCAGATCTTAGTCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
*
46994944 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
46994984 CGAATGCCTTCGAATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAAC-TCGCA
*
46995025 CAAA-GCCTTTGGGA-CTTAGCCCGGA
1 CAAATGCC-TTCGGATCTTAGCCCGGA
46995050 CATCATTCGA
Statistics
Matches: 165, Mismatches: 17, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
39 2 0.01
40 150 0.91
41 13 0.08
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGCCCGGATTTAGTAACTCGCA
Found at i:47000533 original size:41 final size:41
Alignment explanation
Indices: 47000487--47000568 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
47000477 GTGATTCCTT
47000487 AGGACAAGATTGATATCTAGCACACAAGCATACATTAAACA
1 AGGACAAGATTGATATCTAGCACACAAGCATACATTAAACA
*
47000528 AGGACAATATTGATATCTAGCACACAAGCATACATTAAACA
1 AGGACAAGATTGATATCTAGCACACAAGCATACATTAAACA
47000569 TAATCTTGGG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.21
Consensus pattern (41 bp):
AGGACAAGATTGATATCTAGCACACAAGCATACATTAAACA
Found at i:47003229 original size:23 final size:22
Alignment explanation
Indices: 47003201--47003327 Score: 114
Period size: 23 Copynumber: 5.5 Consensus size: 22
47003191 CATAGCTCGT
47003201 AAGAGCTTACTGTTTCAGCTCA
1 AAGAGCTTACTGTTTCAGCTCA
** *
47003223 TTGGAGCTTACTGATTCAGCTCGA
1 -AAGAGCTTACTGTTTCAGCTC-A
47003247 AAGAGCTTACTG-TTCAGCTCA
1 AAGAGCTTACTGTTTCAGCTCA
*
47003268 ACAGAGCTTACCGTTTTCAGCTCA
1 A-AGAGCTTACTG-TTTCAGCTCA
*
47003292 ATAGAGAC-TATTGTTATCAGCTCA
1 A-AGAG-CTTACTGTT-TCAGCTCA
47003316 TGAAGAGCTTAC
1 --AAGAGCTTAC
47003328 CGACCATGTC
Statistics
Matches: 85, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
21 2 0.02
22 18 0.21
23 30 0.35
24 27 0.32
25 7 0.08
26 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (22 bp):
AAGAGCTTACTGTTTCAGCTCA
Found at i:47003287 original size:46 final size:46
Alignment explanation
Indices: 47003194--47003330 Score: 129
Period size: 46 Copynumber: 2.9 Consensus size: 46
47003184 AACTCACCAT
* *** *
47003194 AGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACTGATTC
1 AGCTCGAAAGAGCTTACTGTTTCAGCTCAACAGAGCTTACCGATTC
*
47003240 AGCTCGAAAGAGCTTACTG-TTCAGCTCAACAGAGCTTACCGTTTTC
1 AGCTCGAAAGAGCTTACTGTTTCAGCTCAACAGAGCTTACCG-ATTC
*
47003286 AGCTC-AATAGAGAC-TATTGTTATCAGCTCATGA-AGAGCTTACCGA
1 AGCTCGAA-AGAG-CTTACTGTT-TCAGCTCA--ACAGAGCTTACCGA
47003331 CCATGTCTTG
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
45 20 0.26
46 34 0.45
47 2 0.03
48 8 0.11
49 11 0.14
50 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (46 bp):
AGCTCGAAAGAGCTTACTGTTTCAGCTCAACAGAGCTTACCGATTC
Found at i:47007016 original size:30 final size:30
Alignment explanation
Indices: 47006980--47007109 Score: 169
Period size: 29 Copynumber: 4.5 Consensus size: 30
47006970 GACAAGATTG
*
47006980 GCACTAAGTGTGCGAGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47007010 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47007038 GCACTAAGTGTGCGAG-CTAAAAATATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47007067 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
47007096 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47007110 GATTCACTAT
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
27 1 0.01
28 23 0.26
29 42 0.47
30 23 0.26
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:47018695 original size:29 final size:29
Alignment explanation
Indices: 47018554--47018683 Score: 165
Period size: 29 Copynumber: 4.5 Consensus size: 29
47018544 GACAAGATTG
* * * *
47018554 GCACTAAGTGTGCGGGTTTAAAATTGTATA
1 GCACTAAGTGTGCGAGCTGAAAA-TATATA
* * *
47018584 GCACTAAGTGTGCGAGTTTG--ATTCTATA
1 GCACTAAGTGTGCGAG-CTGAAAATATATA
47018612 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
47018641 GCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGCTGAAAATATATA
47018670 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47018684 GATTCACTAT
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.02
28 21 0.23
29 50 0.56
30 15 0.17
31 2 0.02
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTGAAAATATATA
Found at i:47027334 original size:22 final size:23
Alignment explanation
Indices: 47027288--47027334 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
47027278 CATTGGAGCC
*
47027288 TACTGATTCAGCTCGAAAGAGCT
1 TACTGATTCAGCTCGAAAGAACT
47027311 TACT-ATTCAGCTC-AACAGAACT
1 TACTGATTCAGCTCGAA-AGAACT
47027333 TA
1 TA
47027335 TCGTTTTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 2 0.09
22 16 0.73
23 4 0.18
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (23 bp):
TACTGATTCAGCTCGAAAGAACT
Found at i:47037704 original size:22 final size:22
Alignment explanation
Indices: 47037665--47037775 Score: 118
Period size: 22 Copynumber: 5.0 Consensus size: 22
47037655 GAGTCATGGT
* *
47037665 CGGTAAGCTCCT-TCGAGCAGAA
1 CGGTAAGCT-CTATTGAGCTGAA
*
47037687 CAGTAAGCTCTATTGAGCTGAAA
1 CGGTAAGCTCTATTGAGCTG-AA
47037710 CGGTAAGCTCTATTGAGCTGAA
1 CGGTAAGCTCTATTGAGCTGAA
*
47037732 TGGTAAGCTCTATTGAGCTGAA
1 CGGTAAGCTCTATTGAGCTGAA
* * *
47037754 TGATAAGCT-TCAATGAGCTGAA
1 CGGTAAGCTCT-ATTGAGCTGAA
47037776 ACATAAGCTC
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
21 3 0.04
22 55 0.70
23 21 0.27
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (22 bp):
CGGTAAGCTCTATTGAGCTGAA
Found at i:47037716 original size:45 final size:45
Alignment explanation
Indices: 47037665--47037753 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
47037655 GAGTCATGGT
47037665 CGGTAAGCTCCT-TCGAGCAGAACAGTAAGCTCTATTGAGCTGAAA
1 CGGTAAGCT-CTATCGAGCAGAACAGTAAGCTCTATTGAGCTGAAA
* * **
47037710 CGGTAAGCTCTATTGAGCTGAATGGTAAGCTCTATTGAGCTGAA
1 CGGTAAGCTCTATCGAGCAGAACAGTAAGCTCTATTGAGCTGAA
47037754 TGATAAGCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (45 bp):
CGGTAAGCTCTATCGAGCAGAACAGTAAGCTCTATTGAGCTGAAA
Found at i:47042969 original size:2 final size:2
Alignment explanation
Indices: 47042962--47042996 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
47042952 CTAAATGCAC
47042962 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47042997 TCTATCCTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:47047729 original size:45 final size:46
Alignment explanation
Indices: 47047632--47047740 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
47047622 AGCTTAAGAT
*
47047632 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
47047679 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
47047724 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
47047741 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:47047866 original size:39 final size:40
Alignment explanation
Indices: 47047811--47047895 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
47047801 AAATGAATTG
* * * *
47047811 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
47047850 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
47047890 TGCTGG
1 TGCTGG
47047896 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:47048550 original size:2 final size:2
Alignment explanation
Indices: 47048543--47048567 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47048533 AATTAAGTTT
47048543 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
47048568 TCATGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47051964 original size:40 final size:40
Alignment explanation
Indices: 47051927--47052112 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
47051917 GCTACTCGTT
*
47051927 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
47051967 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
47052007 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47052047 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
47052088 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47052113 CATCATTCGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.02
40 115 0.88
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47059992 original size:40 final size:40
Alignment explanation
Indices: 47059955--47060140 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
47059945 GCTACTCGTT
*
47059955 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
47059995 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
47060035 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
47060075 CGAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
47060116 CAAA-GCCTTCGGGACTTAGTCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
47060141 CATCATTCGA
Statistics
Matches: 131, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.89
41 12 0.09
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:47063449 original size:40 final size:41
Alignment explanation
Indices: 47063399--47063501 Score: 104
Period size: 40 Copynumber: 2.5 Consensus size: 41
47063389 TGGCCTGAAG
47063399 CAATTCTAACTTGTTTTAAAATCATTTT-GA-TGTGTTAAAAT
1 CAATT-TAACTTGTTTTAAAATCATTTTGGATTG-GTTAAAAT
* * * * *
47063440 GATTTTAACTTG-ATTGAAATCATTTTGGCTTGGTTAAAAT
1 CAATTTAACTTGTTTTAAAATCATTTTGGATTGGTTAAAAT
*
47063480 CAATTTCACTTGATTTTAAAAT
1 CAATTTAACTTG-TTTTAAAAT
47063502 TGTTTCAAAA
Statistics
Matches: 48, Mismatches: 10, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
39 12 0.25
40 25 0.52
41 5 0.10
42 6 0.12
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.46
Consensus pattern (41 bp):
CAATTTAACTTGTTTTAAAATCATTTTGGATTGGTTAAAAT
Found at i:47063464 original size:20 final size:20
Alignment explanation
Indices: 47063414--47063494 Score: 67
Period size: 20 Copynumber: 4.1 Consensus size: 20
47063404 CTAACTTGTT
*
47063414 TTAAAATCATTTTGA-TGTG-
1 TTAAAATCATTTTAACT-TGA
*
47063433 TTAAAATGATTTTAACTTGA
1 TTAAAATCATTTTAACTTGA
* ** *
47063453 TTGAAATCATTTTGGCTTGG
1 TTAAAATCATTTTAACTTGA
* *
47063473 TTAAAATCAATTTCACTTGA
1 TTAAAATCATTTTAACTTGA
47063493 TT
1 TT
47063495 TTAAAATTGT
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
19 15 0.31
20 33 0.69
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.46
Consensus pattern (20 bp):
TTAAAATCATTTTAACTTGA
Found at i:47068162 original size:46 final size:46
Alignment explanation
Indices: 47068056--47068175 Score: 134
Period size: 48 Copynumber: 2.6 Consensus size: 46
47068046 TGTCTTCGAC
** * * *
47068056 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAA
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATAGATAT--A
* *
47068104 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATAGCTGAT-
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATAGAT-ATA
*
47068150 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
47068176 CTGTCCTATC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 24 0.39
48 36 0.58
49 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.34
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATAGATATA
Found at i:47069049 original size:37 final size:37
Alignment explanation
Indices: 47068990--47069098 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
47068980 AGCTCAGACG
* *
47068990 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
47069027 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
47069064 TAATCTCCACACGTAGTCATTGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
47069099 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:47069354 original size:45 final size:47
Alignment explanation
Indices: 47069304--47069447 Score: 166
Period size: 47 Copynumber: 3.1 Consensus size: 47
47069294 ATATATATTT
* * *
47069304 CACATTGACCATTCGGCTTTA-C-CACATATGCATGTTCATATTCAC
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
* *
47069349 CACATTGGCCATTCGACCTTATCACACATATGCATGTTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
* * * * ** *
47069396 CACATAGGCCATTCGGCCTTATCTCATATATACACATTCACATTCAT
1 CACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
47069443 CACAT
1 CACAT
47069448 AAAATCCTAA
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 18 0.21
46 1 0.01
47 66 0.78
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAC
Found at i:47076744 original size:13 final size:13
Alignment explanation
Indices: 47076714--47076752 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
47076704 AAATATATAC
* *
47076714 AAAATATTAAATT
1 AAAATATAAAAAT
*
47076727 CAAATATAAAAAT
1 AAAATATAAAAAT
47076740 AAAATATAAAAAT
1 AAAATATAAAAAT
47076753 TAAACAACAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATATAAAAAT
Found at i:47076934 original size:18 final size:18
Alignment explanation
Indices: 47076911--47076953 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
47076901 ATATTAAGAT
*
47076911 AATTTAATAAAAAAATAA
1 AATTTAAGAAAAAAATAA
* *
47076929 AATTT-AGAGAGAAATAA
1 AATTTAAGAAAAAAATAA
47076946 AATTTAAG
1 AATTTAAG
47076954 TGAGAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (18 bp):
AATTTAAGAAAAAAATAA
Found at i:47076945 original size:17 final size:18
Alignment explanation
Indices: 47076923--47076961 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
47076913 TTTAATAAAA
47076923 AAATAAAATTT-AGAGAG
1 AAATAAAATTTAAGAGAG
*
47076940 AAATAAAATTTAAGTGAG
1 AAATAAAATTTAAGAGAG
47076958 AAAT
1 AAAT
47076962 TAAGAGAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (18 bp):
AAATAAAATTTAAGAGAG
Found at i:47080638 original size:39 final size:39
Alignment explanation
Indices: 47080591--47080773 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
47080581 AATGTTCGAG
47080591 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
47080630 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
47080669 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
47080708 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
47080748 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
47080774 GTTTGAACGA
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:47088142 original size:38 final size:39
Alignment explanation
Indices: 47088022--47088203 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
47088012 AATGTTCGAG
47088022 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
47088061 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
47088100 TGATATCCGGGCTAAG-CCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
47088138 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
47088178 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
47088204 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
38 33 0.27
39 54 0.44
40 37 0.30
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:47090262 original size:40 final size:40
Alignment explanation
Indices: 47090217--47090384 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
47090207 CGGAATATAA
47090217 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
47090257 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
47090297 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
47090337 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47090377 CCGGATAT
1 CCGGATAT
47090385 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47093344 original size:40 final size:41
Alignment explanation
Indices: 47093299--47093458 Score: 139
Period size: 41 Copynumber: 3.9 Consensus size: 41
47093289 TGTAAAACAT
* *
47093299 AGAGCAATAGTGGCATTTTAC-AAAAAACACCGCTAAAAA-C
1 AGAGCAATAGCGGCACTTT-CGAAAAAACACCGCTAAAAACC
* * *
47093339 AGAGCAATAGCGGCGCTTTCGATAAAACGCCGCTAAAAACC
1 AGAGCAATAGCGGCACTTTCGAAAAAACACCGCTAAAAACC
* * * *
47093380 AGAGCATTAGCGGCGCTTTCCG-TAAAACGCCGCTAAAAACC
1 AGAGCAATAGCGGCACTTT-CGAAAAAACACCGCTAAAAACC
* * * * *
47093421 ATAGCATTAGCGGCGCTTTCTG-TAAAACGCCGCTAAAA
1 AGAGCAATAGCGGCACTTTC-GAAAAAACACCGCTAAAA
47093459 GTCATATAAC
Statistics
Matches: 109, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
39 1 0.01
40 33 0.30
41 73 0.67
42 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.20, T:0.18
Consensus pattern (41 bp):
AGAGCAATAGCGGCACTTTCGAAAAAACACCGCTAAAAACC
Found at i:47093395 original size:41 final size:40
Alignment explanation
Indices: 47093322--47093458 Score: 213
Period size: 41 Copynumber: 3.4 Consensus size: 40
47093312 CATTTTACAA
* *
47093322 AAAACACCGCTAAAAA-CAGAGCAATAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCG-T
47093362 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCCGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTT-CGT
*
47093403 AAAACGCCGCTAAAAACCATAGCATTAGCGGCGCTTTCTGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTC-GT
47093444 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
47093459 GTCATATAAC
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
40 16 0.18
41 73 0.80
42 2 0.02
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.17
Consensus pattern (40 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGT
Found at i:47093815 original size:21 final size:21
Alignment explanation
Indices: 47093789--47093832 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
47093779 TAGGAATTAT
*
47093789 GGTTTAAGTGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGG-TTAA
*
47093810 GGTTTAGGGGTTAGGGGTTAA
1 GGTTTAAGGGTTAGGGGTTAA
47093831 GG
1 GG
47093833 GTCTATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGGTTAA
Found at i:47094088 original size:21 final size:21
Alignment explanation
Indices: 47094041--47094091 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
47094031 TATGGTTAAA
*
47094041 GGTTTAAGGTTATGAGTTACT
1 GGTTTAAGGTTATGAATTACT
**
47094062 ATTTTAAGGTTTATGAATTA-T
1 GGTTTAAGG-TTATGAATTACT
47094083 GGTTTAAGG
1 GGTTTAAGG
47094092 GTTGAGGTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (21 bp):
GGTTTAAGGTTATGAATTACT
Found at i:47094128 original size:7 final size:7
Alignment explanation
Indices: 47094113--47094143 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
47094103 AAGTTTAGGA
*
47094113 GTTAGGG
1 GTTATGG
47094120 GTTATGG
1 GTTATGG
47094127 GTTATGG
1 GTTATGG
47094134 GTTATGG
1 GTTATGG
47094141 GTT
1 GTT
47094144 CAGGGTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.00, G:0.45, T:0.42
Consensus pattern (7 bp):
GTTATGG
Found at i:47094135 original size:14 final size:14
Alignment explanation
Indices: 47094113--47094148 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
47094103 AAGTTTAGGA
47094113 GTTAGGGGTTATGG
1 GTTAGGGGTTATGG
*
47094127 GTTATGGGTTATGG
1 GTTAGGGGTTATGG
47094141 GTTCAGGG
1 GTT-AGGG
47094149 TTAATATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 16 0.84
15 3 0.16
ACGTcount: A:0.14, C:0.03, G:0.47, T:0.36
Consensus pattern (14 bp):
GTTAGGGGTTATGG
Found at i:47094178 original size:16 final size:16
Alignment explanation
Indices: 47094157--47094198 Score: 77
Period size: 15 Copynumber: 2.7 Consensus size: 16
47094147 GGTTAATATT
47094157 AACCCCTAAAACCTTA
1 AACCCCTAAAACCTTA
47094173 AACCCCT-AAACCTTA
1 AACCCCTAAAACCTTA
47094188 AACCCCTAAAA
1 AACCCCTAAAA
47094199 AATCATAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 15 0.60
16 10 0.40
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (16 bp):
AACCCCTAAAACCTTA
Done.