Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 163 of 328
Found at i:47803235 original size:16 final size:16
Alignment explanation
Indices: 47803214--47803256 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
47803204 GTAGCCAAAC
47803214 TTTCGGCTTTTTAACA
1 TTTCGGCTTTTTAACA
* **
47803230 TTTCGGCATTTTGGCA
1 TTTCGGCTTTTTAACA
47803246 TTTCGGCTTTT
1 TTTCGGCTTTT
47803257 GCCGATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.12, C:0.19, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTTAACA
Found at i:47806904 original size:28 final size:28
Alignment explanation
Indices: 47806861--47806940 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
47806851 CATACATGCT
* * *
47806861 TATGGCCTACTGGGCCCAATCTCAT-TCA
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
47806889 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
47806918 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
47806941 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 20 0.44
29 24 0.53
30 1 0.02
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:47811405 original size:28 final size:29
Alignment explanation
Indices: 47811351--47811411 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 29
47811341 GAAAGCATGA
*
47811351 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
*
47811380 ATATGAATGAGA-TTGGGCCTAGTGGGCC
1 ATATGAATGAGATTTGGGCCTAATGGGCC
47811408 ATAT
1 ATAT
47811412 ACATGTATGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 19 0.63
29 11 0.37
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.30
Consensus pattern (29 bp):
ATATGAATGAGATTTGGGCCTAATGGGCC
Found at i:47819084 original size:41 final size:41
Alignment explanation
Indices: 47819039--47819156 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
47819029 TGAAAGATAA
47819039 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
47819080 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
47819110 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
47819151 ATGTAG
1 ATGTAG
47819157 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:47819095 original size:71 final size:71
Alignment explanation
Indices: 47819007--47819170 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
47818997 GAGATGTATC
47819007 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
47819072 AGGACA
66 AGGACA
47819078 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
47819143 AGGACA
66 AGGACA
47819149 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
47819171 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:47822943 original size:50 final size:50
Alignment explanation
Indices: 47822889--47823272 Score: 382
Period size: 50 Copynumber: 7.7 Consensus size: 50
47822879 CTAGTACGCA
* * * *
47822889 TAGTAGCCTGCACTTGGTACTACATATGCGACCTATCAATCTAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * * * **
47822939 TAGTAGCCTACACTTAGTACTATACATGTGACTTATCCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* * ** * * *
47822989 TAGTAGCCTGCATTTAGTACTACACACGTGATCAAAGTTAA-CGGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTA-TCAATCTGGTACACG
* *
47823040 TAGTAGCCTGCACTTAGTACTACATCATGCGACCTATCAATCGGGTACACG
1 TAGTAGCCTGCACTTAGTACTACA-CATGTGACCTATCAATCTGGTACACG
* * * * *
47823091 TAGTAGCCTGCACTTAGTAC-ACAC--GTGACCTAACCATCTGATAAATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* ** * * * *
47823138 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAACTATCGGGTACA-A
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCTATCAATCTGGTACACG
* *
47823188 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
* *
47823238 TAGTAGCCTCCACTTAGTACTACACACGTGACCTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTA
47823273 AAATTGTCTT
Statistics
Matches: 274, Mismatches: 51, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
47 36 0.13
48 4 0.01
49 14 0.05
50 140 0.51
51 73 0.27
52 7 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTATCAATCTGGTACACG
Found at i:47826877 original size:40 final size:39
Alignment explanation
Indices: 47826815--47827101 Score: 303
Period size: 40 Copynumber: 7.2 Consensus size: 39
47826805 CGGATGATAA
* *
47826815 CCGGGCTAAGTCCCG-AGAGCATTTGAGCAAGTGCCTA-ATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGT-ACTATA-T
* * *
47826855 TCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* *
47826895 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* * *
47826935 CCGAGCTAAGTCCCGAAGGCGTTTGTGCAAGCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* * * *
47826975 CCGGGCTAAGTCCCTAAGGAATTTGTGCGAGTTATTATA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
*
47827014 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATAT
* * *
47827054 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGT-ACTATAT
47827094 CC-GGCTAA
1 CCGGGCTAA
47827102 ACTCCGAAGG
Statistics
Matches: 217, Mismatches: 25, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
39 42 0.19
40 171 0.79
41 4 0.02
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATAT
Found at i:47827111 original size:79 final size:79
Alignment explanation
Indices: 47826811--47827101 Score: 336
Period size: 80 Copynumber: 3.7 Consensus size: 79
47826801 TGTTCGGATG
* * * *
47826811 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCAAGTGCCTAATTTCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTGACT-ATATCCGGCTAAGTCCCGAAGGC
* *
47826875 ATTCGTGCGAGCTACT
64 ATTTGTGCAAGCTACT
* * *
47826891 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATATCCGAGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TGACTATATCCG-GCTAAGTCCCGAAGGC
* *
47826955 GTTTGTGCAAGCTATT
64 ATTTGTGCAAGCTACT
* * * * * *
47826971 ATATCCGGGCTAAGTCCCTAAGGAATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATATCC-GGCTAAGTCCCGAAGGCA
*
47827035 TTTGTGCAAGTTACT
65 TTTGTGCAAGCTACT
* *
47827050 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATATCCGGCTAA
47827102 ACTCCGAAGG
Statistics
Matches: 179, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
79 78 0.44
80 98 0.55
81 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACTATATCCGGCTAAGTCCCGAAGGCAT
TTGTGCAAGCTACT
Found at i:47831983 original size:27 final size:27
Alignment explanation
Indices: 47831935--47832000 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
47831925 TCGAAGGAAC
* **
47831935 TACTG-TACTAGTGGCTTTGCCACGTAT
1 TACTGATATTAGTGGCTACGCCACGT-T
47831962 T-CTGATATTAGTGGCTACGCCACGTT
1 TACTGATATTAGTGGCTACGCCACGTT
*
47831988 TACTGTTATTAGT
1 TACTGATATTAGT
47832001 AGCTTTGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.15
27 28 0.85
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (27 bp):
TACTGATATTAGTGGCTACGCCACGTT
Found at i:47836985 original size:22 final size:22
Alignment explanation
Indices: 47836910--47836985 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
47836900 ACATGCACAT
*
47836910 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
47836932 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
47836956 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
47836979 ATGTGAT
1 ATGTGAT
47836986 GAACGTAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.12, G:0.28, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:47837006 original size:94 final size:95
Alignment explanation
Indices: 47836790--47837022 Score: 319
Period size: 94 Copynumber: 2.5 Consensus size: 95
47836780 TTAGGATTTT
* * * *
47836790 ATGTGATGGATGTGAATATGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAC
1 ATGTGATGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAC
* *
47836855 ATGCATATGTGTGATAAGGCCGAATGGCCA
66 ATGCATATATGTGATAAGGCAGAATGGCCA
* *
47836885 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTG-AAC
1 ATGTGATGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAC
47836949 ATGCATATATGTGATAAGGCAGAATGGCCA
66 ATGCATATATGTGATAAGGCAGAATGGCCA
* ** *
47836979 ATGTGATGAACGTA-GAA-GTGTATATATGTGGGAAAGCCGAATGG
1 ATGTGATGAA--TATGAACATGTATATATGTGATAAGGCCGAATGG
47837023 TTAATGCGAA
Statistics
Matches: 122, Mismatches: 14, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
94 62 0.51
95 58 0.48
96 2 0.02
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (95 bp):
ATGTGATGAATATGAACATGTATATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAC
ATGCATATATGTGATAAGGCAGAATGGCCA
Found at i:47837022 original size:47 final size:47
Alignment explanation
Indices: 47836790--47836988 Score: 317
Period size: 47 Copynumber: 4.2 Consensus size: 47
47836780 TTAGGATTTT
* * *
47836790 ATGTGATGGATGTGAATATGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
47836837 ATGTGATGAATGTGAAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTG-AACATGCATATATGTGATAAGGCCGAATGGCCA
* *
47836885 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
47836932 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
47836979 ATGTGATGAA
1 ATGTGATGAA
47836989 CGTAGAAGTG
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
47 96 0.69
48 43 0.31
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:47837055 original size:46 final size:46
Alignment explanation
Indices: 47837002--47837092 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
47836992 AGAAGTGTAT
* * *
47837002 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
47837048 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
47837093 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:47838171 original size:63 final size:63
Alignment explanation
Indices: 47838072--47838193 Score: 172
Period size: 63 Copynumber: 1.9 Consensus size: 63
47838062 TGAGTTACAA
* *
47838072 GTCCGGTAATGCCCCTTACCTATTCCGGCGAAGGTTACGGGATAGGGGTCTTACATTTTGTCT
1 GTCCGGTAACGCCCCTTACCTATTCCAGCGAAGGTTACGGGATAGGGGTCTTACATTTTGTCT
* * * * * *
47838135 GTCCGGTGACGCCCCTTACCTATTCTAGTGATGGTTACGGGATAGGGGTGTTGCATTTT
1 GTCCGGTAACGCCCCTTACCTATTCCAGCGAAGGTTACGGGATAGGGGTCTTACATTTT
47838194 ATTAGTATCA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 51 1.00
ACGTcount: A:0.16, C:0.22, G:0.29, T:0.33
Consensus pattern (63 bp):
GTCCGGTAACGCCCCTTACCTATTCCAGCGAAGGTTACGGGATAGGGGTCTTACATTTTGTCT
Found at i:47843188 original size:40 final size:39
Alignment explanation
Indices: 47843023--47843206 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
47843013 AAATTGAATG
* * *
47843023 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
47843063 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
47843103 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
47843143 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
47843182 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
47843207 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:47843231 original size:80 final size:81
Alignment explanation
Indices: 47843063--47843251 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
47843053 GCTGGAAATT
* * * *
47843063 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
47843128 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
47843144 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
47843207 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
47843223 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
47843252 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:47851313 original size:40 final size:39
Alignment explanation
Indices: 47851148--47851331 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
47851138 AAATTGAATG
* * *
47851148 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
47851188 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
47851228 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
47851268 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
47851307 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
47851332 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:47851356 original size:80 final size:81
Alignment explanation
Indices: 47851188--47851376 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
47851178 GCTGGAAATT
* * * *
47851188 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
47851253 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
47851269 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
47851332 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
47851348 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
47851377 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:47857828 original size:43 final size:43
Alignment explanation
Indices: 47857779--47857862 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
47857769 TGTGATTCCG
* *
47857779 ATATGTGTCTACGA-GTAAGACCCTGTCTGGGACAGTGGCATCA
1 ATATGTGGCTAC-ATGTAAGACCATGTCTGGGACAGTGGCATCA
* *
47857822 ATATGTGGCTGCATGTAAGACCATGTCTGGGACATTGGCAT
1 ATATGTGGCTACATGTAAGACCATGTCTGGGACAGTGGCAT
47857863 TGTATGATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 1 0.03
43 35 0.97
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
ATATGTGGCTACATGTAAGACCATGTCTGGGACAGTGGCATCA
Found at i:47867681 original size:2 final size:2
Alignment explanation
Indices: 47867674--47867704 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
47867664 GAGACTAGTC
47867674 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
47867705 CATGTCATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47869743 original size:30 final size:30
Alignment explanation
Indices: 47869709--47869767 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
47869699 CCTTAACTCA
47869709 AACTTTGGAAAAATTACAATTTTGCCCCTG
1 AACTTTGGAAAAATTACAATTTTGCCCCTG
* * * * *
47869739 AACTTTTGTACATTTACACTTTTGCCCCT
1 AACTTTGGAAAAATTACAATTTTGCCCCT
47869768 AGGCTCGGGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.39
Consensus pattern (30 bp):
AACTTTGGAAAAATTACAATTTTGCCCCTG
Found at i:47871125 original size:2 final size:2
Alignment explanation
Indices: 47871118--47871151 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
47871108 TATATGACTT
47871118 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47871152 CTTTCACCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:47885391 original size:20 final size:20
Alignment explanation
Indices: 47885366--47885403 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47885356 GTTTATTCGC
*
47885366 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
47885386 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
47885404 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:47893370 original size:20 final size:20
Alignment explanation
Indices: 47893345--47893382 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47893335 GTTTATTCGC
*
47893345 GATTTTCAATATTTTGTAAA
1 GATTTTCAAAATTTTGTAAA
*
47893365 GATTTTTAAAATTTTGTA
1 GATTTTCAAAATTTTGTA
47893383 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.03, G:0.11, T:0.53
Consensus pattern (20 bp):
GATTTTCAAAATTTTGTAAA
Found at i:47911583 original size:54 final size:54
Alignment explanation
Indices: 47911496--47911670 Score: 199
Period size: 54 Copynumber: 3.2 Consensus size: 54
47911486 ACCAATAGGG
** * * *
47911496 CGAAATACCCCCGACTTGTAAAATTATTGAAATACCCTCGGGTTGTAAAATTAC
1 CGAAATACCCCTAATTTGTAAAATTATCGAAATACCCTCGAGTTGTAAAATTAC
* * * * * *
47911550 CGAATTACCCCTAATTTGTGAAATTATCGAAATATCCTCGATTTTTGAAATTAC
1 CGAAATACCCCTAATTTGTAAAATTATCGAAATACCCTCGAGTTGTAAAATTAC
* * * *
47911604 CAAAATACCCTTGATTTGTAAAATTATCGAAATACCCTTGTAG-TGTAAAATTAC
1 CGAAATACCCCTAATTTGTAAAATTATCGAAATACCCTCG-AGTTGTAAAATTAC
47911658 CGAAATACCCCTA
1 CGAAATACCCCTA
47911671 TAAGGTGAAA
Statistics
Matches: 96, Mismatches: 24, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
54 95 0.99
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (54 bp):
CGAAATACCCCTAATTTGTAAAATTATCGAAATACCCTCGAGTTGTAAAATTAC
Found at i:47911641 original size:27 final size:27
Alignment explanation
Indices: 47911496--47911667 Score: 150
Period size: 27 Copynumber: 6.4 Consensus size: 27
47911486 ACCAATAGGG
* * *
47911496 CGAAATACCCCCGACTTGTAAAATTAT
1 CGAAATACCCTCGATTTGTAAAATTAC
* **
47911523 TGAAATACCCTCGGGTTGTAAAATTAC
1 CGAAATACCCTCGATTTGTAAAATTAC
* * * *
47911550 CGAATTACCC-CTAATTTGTGAAATTAT
1 CGAAATACCCTC-GATTTGTAAAATTAC
* * *
47911577 CGAAATATCCTCGATTTTTGAAATTAC
1 CGAAATACCCTCGATTTGTAAAATTAC
* * *
47911604 CAAAATACCCTTGATTTGTAAAATTAT
1 CGAAATACCCTCGATTTGTAAAATTAC
* *
47911631 CGAAATACCCTTG-TAGTGTAAAATTAC
1 CGAAATACCCTCGAT-TTGTAAAATTAC
47911658 CGAAATACCC
1 CGAAATACCC
47911668 CTATAAGGTG
Statistics
Matches: 116, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 113 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.31
Consensus pattern (27 bp):
CGAAATACCCTCGATTTGTAAAATTAC
Found at i:47912146 original size:27 final size:27
Alignment explanation
Indices: 47912116--47912178 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
47912106 CCAGTGGCTA
* *
47912116 TGTGCCTATCATATTTATCGATGACTC
1 TGTGCCGATCATATTTATCCATGACTC
* * *
47912143 TGTGTCGATCATATTTATCCATGGCTG
1 TGTGCCGATCATATTTATCCATGACTC
47912170 TGTGCCGAT
1 TGTGCCGAT
47912179 TTTCATTGTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
TGTGCCGATCATATTTATCCATGACTC
Found at i:47912958 original size:10 final size:10
Alignment explanation
Indices: 47912943--47912967 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47912933 TAGGCCTCAA
47912943 TGGGCTGAAG
1 TGGGCTGAAG
47912953 TGGGCTGAAG
1 TGGGCTGAAG
47912963 TGGGC
1 TGGGC
47912968 CCAATGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.52, T:0.20
Consensus pattern (10 bp):
TGGGCTGAAG
Found at i:47913169 original size:27 final size:27
Alignment explanation
Indices: 47913139--47913198 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
47913129 CAATAGGACC
47913139 GAAATAGCCC-CGACTTGTAAAATTAT-T
1 GAAATA-CCCTCGACTTGTAAAATT-TCT
**
47913166 GAAATACCCTCGGGTTGTAAAATTTCT
1 GAAATACCCTCGACTTGTAAAATTTCT
47913193 GAAATA
1 GAAATA
47913199 TCCATAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 4 0.14
27 25 0.86
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (27 bp):
GAAATACCCTCGACTTGTAAAATTTCT
Found at i:47913235 original size:27 final size:27
Alignment explanation
Indices: 47913205--47913282 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
47913195 AATATCCATA
* *
47913205 ATTTGTGAAATTACCGAAATATCCTC-T
1 ATTTGTGAAATTACCGAAATA-CCCCGG
* *
47913232 ATTTTTGAAATTACCAAAATACCCCGG
1 ATTTGTGAAATTACCGAAATACCCCGG
* *
47913259 ATTTGTAAAATTATCGAAATACCC
1 ATTTGTGAAATTACCGAAATACCC
47913283 TTGTAGTGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.07
27 39 0.93
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.33
Consensus pattern (27 bp):
ATTTGTGAAATTACCGAAATACCCCGG
Found at i:47913320 original size:27 final size:27
Alignment explanation
Indices: 47913239--47913322 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
47913229 TCTATTTTTG
* *
47913239 AAATTACCAAAATACCCCGGAT-TTGTA
1 AAATTACCAAAATACCCC-TATAGTGTA
* * * *
47913266 AAATTATCGAAATACCCTTGTAGTGTA
1 AAATTACCAAAATACCCCTATAGTGTA
*
47913293 AAATTACCAAAATACCCCTATAGGGTA
1 AAATTACCAAAATACCCCTATAGTGTA
47913320 AAA
1 AAA
47913323 ATGACTGTTT
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
26 1 0.02
27 44 0.98
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTATAGTGTA
Found at i:47913815 original size:27 final size:27
Alignment explanation
Indices: 47913752--47913820 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
47913742 TACTTACCAG
*
47913752 TGGCTATGTGCCT-ATCATATTTATCGA
1 TGGCTATGTG-CTGATCATATTTATCCA
** * *
47913779 TGATTCTGTGTTGATCATATTTATCCA
1 TGGCTATGTGCTGATCATATTTATCCA
47913806 TGGCTATGTGCTGAT
1 TGGCTATGTGCTGAT
47913821 TTTCATTGTC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
TGGCTATGTGCTGATCATATTTATCCA
Found at i:47914808 original size:27 final size:27
Alignment explanation
Indices: 47914778--47914830 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
47914768 CCAATAGGAC
47914778 TGAAATAGCCC-CGACTTGTAAAATTAT
1 TGAAATA-CCCTCGACTTGTAAAATTAT
**
47914805 TGAAATACCCTCGGGTTGTAAAATTA
1 TGAAATACCCTCGACTTGTAAAATTA
47914831 CCGAATTACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 3 0.13
27 20 0.87
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (27 bp):
TGAAATACCCTCGACTTGTAAAATTAT
Found at i:47914850 original size:27 final size:27
Alignment explanation
Indices: 47914793--47914949 Score: 111
Period size: 27 Copynumber: 5.8 Consensus size: 27
47914783 TAGCCCCGAC
** ****
47914793 TTGTAAAATTATTGAAATACCCTCGGG
1 TTGTAAAATTACCGAAATACCCTTAAT
*
47914820 TTGTAAAATTACCGAATTACCCTTAAT
1 TTGTAAAATTACCGAAATACCCTTAAT
* * * *
47914847 TTGTGAAATTACCGAAATATCCTCAGT
1 TTGTAAAATTACCGAAATACCCTTAAT
* * * *
47914874 TTTTGAAATTACCAAAATA-CCTCTGAT
1 TTGTAAAATTACCGAAATACCCT-TAAT
* * * *
47914901 TTATAAAATTATCGAAATACCCTTGTAG
1 TTGTAAAATTACCGAAATACCCTT-AAT
47914929 TT-TAAAATTACCGAAATACCC
1 TTGTAAAATTACCGAAATACCC
47914950 CTATAGGGTG
Statistics
Matches: 103, Mismatches: 24, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
26 3 0.03
27 94 0.91
28 6 0.06
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (27 bp):
TTGTAAAATTACCGAAATACCCTTAAT
Found at i:47914937 original size:54 final size:53
Alignment explanation
Indices: 47914796--47914949 Score: 148
Period size: 54 Copynumber: 2.8 Consensus size: 53
47914786 CCCCGACTTG
* * * * *
47914796 TAAAATTATTGAAATACCCTCGGGTTGTAAAATTACCGAATTACCCTTAATTTG
1 TAAAATTATCGAAATACCCTAGTGTT-TAAAATTACCGAAATACCCTTAATTTA
* * * * * * *
47914850 TGAAATTACCGAAATATCCTCAGTTTTTGAAATTACCAAAATA-CCTCTGATTTA
1 TAAAATTATCGAAATACCCT-AGTGTTTAAAATTACCGAAATACCCT-TAATTTA
*
47914904 TAAAATTATCGAAATACCCTTGTAGTTTAAAATTACCGAAATACCC
1 TAAAATTATCGAAATACCCTAGT-GTTTAAAATTACCGAAATACCC
47914950 CTATAGGGTG
Statistics
Matches: 77, Mismatches: 19, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
53 5 0.06
54 67 0.87
55 5 0.06
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (53 bp):
TAAAATTATCGAAATACCCTAGTGTTTAAAATTACCGAAATACCCTTAATTTA
Found at i:47914964 original size:28 final size:27
Alignment explanation
Indices: 47914905--47914964 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
47914895 TCTGATTTAT
* * * * *
47914905 AAAATTATCGAAATACCCTTGTAGTTT
1 AAAATTACCGAAATACCCCTATAGGTG
47914932 AAAATTACCGAAATACCCCTATAGGGTG
1 AAAATTACCGAAATACCCCTATA-GGTG
47914960 AAAAT
1 AAAAT
47914965 AACTGTTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 20 0.74
28 7 0.26
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (27 bp):
AAAATTACCGAAATACCCCTATAGGTG
Found at i:47915455 original size:27 final size:27
Alignment explanation
Indices: 47915379--47915460 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
47915369 TTTGTGCAAG
*
47915379 TCATACTTA-CCAGTGGCTATGTGCCT-A
1 TCATATTTATCCA-TGGCTATGTG-CTGA
* ** * *
47915406 TCATATTTATCGATGATTCTGTGTTGA
1 TCATATTTATCCATGGCTATGTGCTGA
47915433 TCATATTTATCCATGGCTATGTGCTGA
1 TCATATTTATCCATGGCTATGTGCTGA
47915460 T
1 T
47915461 TTTCATTGTC
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.41
Consensus pattern (27 bp):
TCATATTTATCCATGGCTATGTGCTGA
Found at i:47916490 original size:27 final size:27
Alignment explanation
Indices: 47916434--47916491 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
47916424 TACCCCCGAC
* **
47916434 TTGTAAAATTATTGAAATACCCATGGT
1 TTGTAAAATTATTGAAACACCCATAAT
*
47916461 TTGTAAAATT-TCTGAAACACCCCTAAT
1 TTGTAAAATTAT-TGAAACACCCATAAT
47916488 TTGT
1 TTGT
47916492 GGAATAACTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.04
27 25 0.96
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (27 bp):
TTGTAAAATTATTGAAACACCCATAAT
Found at i:47917096 original size:27 final size:27
Alignment explanation
Indices: 47917039--47917101 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
47917029 GCATTGGCTA
* *
47917039 TGTGCCTATCATATTTATCGATGACTC
1 TGTGCCGATCATATTTATCCATGACTC
* * *
47917066 TGTGTCGATCATATTTATCCATGGCTG
1 TGTGCCGATCATATTTATCCATGACTC
47917093 TGTGCCGAT
1 TGTGCCGAT
47917102 TTTCATTGTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
TGTGCCGATCATATTTATCCATGACTC
Found at i:47918130 original size:27 final size:27
Alignment explanation
Indices: 47918074--47918203 Score: 90
Period size: 27 Copynumber: 4.8 Consensus size: 27
47918064 TACCACCGAC
**
47918074 TTGTAAAATTAT-TGAAATACCCAC-GGT
1 TTGTAAAATT-TCTGAAATACCC-CTAAT
47918101 TTGTAAAATTTCTGAAATACCCCTAAT
1 TTGTAAAATTTCTGAAATACCCCTAAT
* *
47918128 TTG-AGGAATTACTGAAATA-CCCTCAAT
1 TTGTA-AAATTTCTGAAATACCCCT-AAT
* ** ** *
47918155 TTGTGAAATAACCAAAATACCCCTGAT
1 TTGTAAAATTTCTGAAATACCCCTAAT
47918182 TTGTAAAATTATC-GAAATACCC
1 TTGTAAAATT-TCTGAAATACCC
47918204 TTGTGGTGTA
Statistics
Matches: 82, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
26 7 0.09
27 70 0.85
28 5 0.06
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTTCTGAAATACCCCTAAT
Found at i:47918227 original size:54 final size:54
Alignment explanation
Indices: 47918057--47918232 Score: 148
Period size: 54 Copynumber: 3.3 Consensus size: 54
47918047 CACCAATAGG
* *
47918057 ACCGAAATACCACC-GACTTGTAAAATTATTGAAATACCC-ACG-GTTTGTAAAATT
1 ACCGAAATACC-CCTGATTTGTAAAATTATCGAAATACCCTA-GTG-TTGTAAAATT
* * * * * * *
47918111 TCTGAAATACCCCTAATTTG-AGGAATTA-CTGAAATACCCTCAAT-TTGTGAAATA
1 ACCGAAATACCCCTGATTTGTA-AAATTATC-GAAATACCCT-AGTGTTGTAAAATT
* * *
47918165 ACCAAAATACCCCTGATTTGTAAAATTATCGAAATACCCTTGTGGTGTAAAATT
1 ACCGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTAGTGTTGTAAAATT
47918219 ACCGAAATACCCCT
1 ACCGAAATACCCCT
47918233 ATAGGGTAAA
Statistics
Matches: 93, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
53 4 0.04
54 86 0.92
55 2 0.02
56 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (54 bp):
ACCGAAATACCCCTGATTTGTAAAATTATCGAAATACCCTAGTGTTGTAAAATT
Found at i:47918245 original size:28 final size:27
Alignment explanation
Indices: 47918134--47918243 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
47918124 TAATTTGAGG
* * * *
47918134 AATTACTGAAATACCCTCAAT-TTGTGA
1 AATTACCGAAATACCC-CTATGGTGTAA
* * *
47918161 AATAACCAAAATACCCCTGAT-TTGTAA
1 AATTACCGAAATACCCCT-ATGGTGTAA
* * *
47918188 AATTATCGAAATACCCTTGTGGTGTAA
1 AATTACCGAAATACCCCTATGGTGTAA
47918215 AATTACCGAAATACCCCTATAGG-GTAA
1 AATTACCGAAATACCCCTAT-GGTGTAA
47918242 AA
1 AA
47918244 ATGACTGTTT
Statistics
Matches: 66, Mismatches: 14, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
26 2 0.03
27 62 0.94
28 2 0.03
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATGGTGTAA
Found at i:47918709 original size:27 final size:27
Alignment explanation
Indices: 47918676--47918741 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
47918666 TTACCATTGG
* * *
47918676 CTATGTGCCTATCATTTTTATCGATGA
1 CTATGTGCCAATCATATTTATCCATGA
* * *
47918703 CTTTGTGTCAATCATATTTATCCATGG
1 CTATGTGCCAATCATATTTATCCATGA
47918730 CTATGTGCCAAT
1 CTATGTGCCAAT
47918742 TTTCATTGTC
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (27 bp):
CTATGTGCCAATCATATTTATCCATGA
Found at i:47919945 original size:22 final size:22
Alignment explanation
Indices: 47919894--47919954 Score: 68
Period size: 22 Copynumber: 2.8 Consensus size: 22
47919884 CTGCTTAATC
47919894 TGATTATGGCTCTGTGCCAACT
1 TGATTATGGCTCTGTGCCAACT
* * * **
47919916 TAAATATGGCTCTGTGCTATGT
1 TGATTATGGCTCTGTGCCAACT
*
47919938 TGATTATGGCTTTGTGC
1 TGATTATGGCTCTGTGC
47919955 AAGTCGTACT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.18, C:0.16, G:0.25, T:0.41
Consensus pattern (22 bp):
TGATTATGGCTCTGTGCCAACT
Found at i:47920019 original size:27 final size:27
Alignment explanation
Indices: 47919989--47920045 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
47919979 TGCCTGTCAA
* *
47919989 ATTTATCGATGACTCTGTGTCGATCAT
1 ATTTATCCATGACTCTGTGTCAATCAT
* * *
47920016 ATTTATCCATGGCTGTGTGTCAATTAT
1 ATTTATCCATGACTCTGTGTCAATCAT
47920043 ATT
1 ATT
47920046 ACCGTCGCTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.16, G:0.18, T:0.44
Consensus pattern (27 bp):
ATTTATCCATGACTCTGTGTCAATCAT
Found at i:47921023 original size:37 final size:37
Alignment explanation
Indices: 47920960--47921108 Score: 226
Period size: 37 Copynumber: 4.0 Consensus size: 37
47920950 GCTCAGATGA
* * * * * *
47920960 AATCTGCACACGAAGTTATCTGGTCTTACCCAGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
47920997 AATCTCCACATGTAGTCATCGAGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
47921034 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
47921071 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
47921108 A
1 A
47921109 TTTCCAAGTT
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:47921309 original size:48 final size:48
Alignment explanation
Indices: 47921229--47921677 Score: 763
Period size: 48 Copynumber: 9.3 Consensus size: 48
47921219 GGTCATTCGG
* * *
47921229 CCACAATATACATACGTCTCCTACATATTTCACACTAGCCCTTCGGCTTTA
1 CCAC-ATATACATA--TCTCATACATATTTCACATTAGCCATTCGGCTTTA
* * *
47921280 CCACATATACGTATCTCATACATATTTCACACTAGCCATTCGGTTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
47921328 CCACATATACATATCTCATATATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
47921376 TCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
47921424 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
47921472 CCACATATACATATCTCATACATATTTCACATTAGCCACTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
47921520 CCACTTATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
47921568 CCACATATACATATCTCATACATATTTCACATTAGCCATTCAGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
*
47921616 CCACATATACATATCTCATACATATTTCACATTATCCATTCGGCTTTA
1 CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
47921664 CCACATATACATAT
1 CCACATATACATAT
47921678 ATTTATCTTG
Statistics
Matches: 380, Mismatches: 18, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
48 368 0.97
50 8 0.02
51 4 0.01
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
CCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTA
Found at i:47926157 original size:24 final size:24
Alignment explanation
Indices: 47926130--47926432 Score: 534
Period size: 24 Copynumber: 12.6 Consensus size: 24
47926120 CTTATTATGT
* * *
47926130 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
47926154 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47926178 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47926202 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47926226 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47926250 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
47926274 TCACACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
47926298 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
*
47926322 TCGCACACATAGTGCCATAGTAAC
1 TCGCACACATAGTGCCATAGTAAA
47926346 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47926370 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
47926394 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
47926418 TCGCACACATAGTGC
1 TCGCACACATAGTGC
47926433 ATTTGAGATA
Statistics
Matches: 269, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 269 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:47935391 original size:46 final size:46
Alignment explanation
Indices: 47935341--47935516 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
47935331 TATTTGGGCA
47935341 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47935387 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
47935432 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
47935480 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47935517 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47935496 original size:93 final size:93
Alignment explanation
Indices: 47935337--47935508 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
47935327 TGGATATTTG
* *
47935337 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47935402 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
47935430 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47935495 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
47935509 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:47938503 original size:15 final size:15
Alignment explanation
Indices: 47938464--47938542 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
47938454 GTATCTTGGG
*
47938464 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
47938479 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
47938494 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
47938508 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
47938523 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
47938537 TTTCTT
1 TTTCTT
47938543 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:47938527 original size:29 final size:29
Alignment explanation
Indices: 47938455--47938541 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
47938445 CATAGTATCG
* * * *
47938455 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
47938485 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
47938514 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
47938542 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:47940936 original size:46 final size:46
Alignment explanation
Indices: 47940886--47941061 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
47940876 TATTTGGGCA
47940886 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
47940932 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
47940977 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
47941025 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
47941062 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:47941041 original size:93 final size:93
Alignment explanation
Indices: 47940882--47941053 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
47940872 TGGATATTTG
* *
47940882 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47940947 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
47940975 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
47941040 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
47941054 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:47942467 original size:24 final size:24
Alignment explanation
Indices: 47942440--47942646 Score: 351
Period size: 24 Copynumber: 8.6 Consensus size: 24
47942430 CTTATTATGT
* *
47942440 TCGCACACATAGAGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
* * *
47942464 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
47942488 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47942512 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47942536 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47942560 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
47942584 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
47942608 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
47942632 TCGCACACATAGTGC
1 TCGCACACATAGTGC
47942647 ATTTGAGATA
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 178 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:47948718 original size:40 final size:40
Alignment explanation
Indices: 47948554--47948813 Score: 160
Period size: 40 Copynumber: 6.6 Consensus size: 40
47948544 CGAATGGTAT
* *** *
47948554 CCGGGCTAAGTCCCGAAGGTTTTTGTGCGAAGTGACTA-AA
1 CCGGGCTAATTCCCGAAGGCAATTGTGCGAA-TCACTATAA
* * * * * *
47948594 TCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AATTCCCGAAGGCAATTGTGCGAATCACTATAA
* * * * * *
47948634 CCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
47948673 TCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 -CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
* * * * * *
47948714 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
* * *
47948754 CC-GGTTAAATT-TCGAAGG-TA-TGTGCGAATCACTATAA
1 CCGGGCT-AATTCCCGAAGGCAATTGTGCGAATCACTATAA
*
47948791 CCGGGCT-ATGTCCCGAAGACAAT
1 CCGGGCTAAT-TCCCGAAGGCAAT
47948814 CGAGCGAGTC
Statistics
Matches: 171, Mismatches: 36, Indels: 26
0.73 0.15 0.11
Matches are distributed among these distances:
36 2 0.01
37 15 0.09
38 9 0.05
39 18 0.11
40 122 0.71
41 5 0.03
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
Found at i:47948727 original size:80 final size:80
Alignment explanation
Indices: 47948554--47948841 Score: 253
Period size: 80 Copynumber: 3.6 Consensus size: 80
47948544 CGAATGGTAT
** * * *
47948554 CCGGGCTAAGTCCCGAAGGTTTTTGTGCGAAGTGACTAAAT-CGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTCACTAAATCCGGGTAAATTCCCGAAGGCAATT
* * * *
47948618 GTGCGAGTTACCAAAA
65 GTGCGAATCACTATAA
* * *
47948634 CCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCT-AATTCCCGAAGGCAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAATCCGGG-TAAATTCCCGAAGGCAATT
47948698 GTGCGAATCACTATAA
65 GTGCGAATCACTATAA
* * * * * * * * * *
47948714 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAAATT-TCGAAGG-TA-TG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAATCCGGGTAAATTCCCGAAGGCAATTG
47948776 TGCGAATCACTATAA
66 TGCGAATCACTATAA
* * * * * * * *
47948791 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAATCCGGGTAAATT
47948842 TCGAAGGTAC
Statistics
Matches: 182, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
77 68 0.37
78 1 0.01
79 17 0.09
80 95 0.52
81 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAATCCGGGTAAATTCCCGAAGGCAATTG
TGCGAATCACTATAA
Found at i:47948794 original size:77 final size:77
Alignment explanation
Indices: 47948697--47948850 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
47948687 CGAAGGCAAT
47948697 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAA
1 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAA
47948762 ATTTCGAAGGTA
66 ATTTCGAAGGTA
47948774 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAA
1 TGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAA
47948839 ATTTCGAAGGTA
66 ATTTCGAAGGTA
47948851 CGTGATTCGG
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.25
Consensus pattern (77 bp):
TGTGCGAATCACTATAACCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATATCCGGTTAA
ATTTCGAAGGTA
Found at i:47948829 original size:40 final size:40
Alignment explanation
Indices: 47948674--47948834 Score: 132
Period size: 40 Copynumber: 4.1 Consensus size: 40
47948664 GTTACTAAAT
* * *
47948674 CCGGGCTAAT-TCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
47948714 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTATGTCCCGAAGACAATCGAGCGAATCACTATAA
* ** ** ** *
47948754 CC-GGTTAAATTTCGAAG-GTAT-GTGCGAATCACTATAA
1 CCGGGCTATGTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
47948791 CCGGGCTATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTATGTCCCGAAGACAATCGAGCGAATCACTATAA
47948831 CCGG
1 CCGG
47948835 TTAAATTTCG
Statistics
Matches: 89, Mismatches: 28, Indels: 8
0.71 0.22 0.06
Matches are distributed among these distances:
37 14 0.16
38 12 0.13
39 14 0.16
40 49 0.55
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (40 bp):
CCGGGCTATGTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:47956645 original size:40 final size:40
Alignment explanation
Indices: 47956497--47956676 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
47956487 TTCGAATGGT
* * * *
47956497 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGC-GAGTTACTAA
*
47956538 ATCCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAA
1 ATCCGGGCT-AATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
47956578 A-CCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
47956617 ATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATA
1 ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTA-A
47956658 A-CCGGGCT-ATGTCCCGAAG
1 ATCCGGGCTAAT-TCCCGAAG
47956677 ACAATCGAGC
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
39 36 0.30
40 56 0.47
41 28 0.23
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAATTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:47956675 original size:80 final size:80
Alignment explanation
Indices: 47956499--47956676 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
47956489 CGAATGGTAT
* *
47956499 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
* *
47956564 GTGCGAGTTACCAAA
66 GTGCGAATCACCAAA
* * * *
47956579 CCAGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGG-CTAATTCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTC-AATTCCCGAAGGCAAT
*
47956642 TGTGCGAATCACTATAA
65 TGTGCGAATCACCA-AA
*
47956659 CCGGGCTATGTCCCGAAG
1 CCGGGCTAAGTCCCGAAG
47956677 ACAATCGAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
78 1 0.01
79 41 0.49
80 42 0.50
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGGTCAATTCCCGAAGGCAATT
GTGCGAATCACCAAA
Found at i:47956697 original size:40 final size:40
Alignment explanation
Indices: 47956619--47956702 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
47956609 GTTACTAAAT
* * *
47956619 CCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
* * *
47956659 CCGGGCT-ATGTCCCGAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCGAAGACAATCGAGCGAATCACTATAA
47956699 CCGG
1 CCGG
47956703 TTAAATTCGA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCGAAGACAATCGAGCGAATCACTATAA
Found at i:47956710 original size:80 final size:78
Alignment explanation
Indices: 47956533--47956702 Score: 178
Period size: 79 Copynumber: 2.1 Consensus size: 78
47956523 GTGCTAAGTG
* * * * * *
47956533 ACTAAATCCGGGTCAATTCCCGAAGGCATTTGTGCGAGTTACCAAACCAGGTTAAGTCCCGAAGG
1 ACTAAATCCGGCT-AATTCCCGAAGGCAATTGTGCGAATCACCAAACCAGGCTAAGTCCCGAAGA
* * * *
47956598 CATTTGTGCGAGTT
65 CAATCGAGCGAGTC
* * *
47956612 ACTAAATCCGGGCTAATTCCCGAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCGAAG
1 ACTAAATCC-GGCTAATTCCCGAAGGCAATTGTGCGAATCACCA-AACCAGGCTAAGTCCCGAAG
47956677 ACAATCGAGCGAGTC
64 ACAATCGAGCGAGTC
* *
47956692 GCTATATCCGG
1 ACTAAATCCGG
47956703 TTAAATTCGA
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
79 37 0.50
80 37 0.50
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (78 bp):
ACTAAATCCGGCTAATTCCCGAAGGCAATTGTGCGAATCACCAAACCAGGCTAAGTCCCGAAGAC
AATCGAGCGAGTC
Found at i:47959242 original size:44 final size:44
Alignment explanation
Indices: 47959167--47959262 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
47959157 TTCAATGAAC
*
47959167 TCGCACACTTAGTGCCAATTTAATTAGCCGAAGC-TATAATAT-TA
1 TCGCACACTTAGTGCCAATTTAATTAACCGAA-CTTAT-ATATGTA
*
47959211 TCGCACACTTAGTGCC-ATTTCATTAAACCGAACTTATATATGTA
1 TCGCACACTTAGTGCCAATTTAATT-AACCGAACTTATATATGTA
47959255 TCGCACAC
1 TCGCACAC
47959263 ATAATGCCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
43 12 0.26
44 35 0.74
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.31
Consensus pattern (44 bp):
TCGCACACTTAGTGCCAATTTAATTAACCGAACTTATATATGTA
Found at i:47963092 original size:30 final size:30
Alignment explanation
Indices: 47963058--47963117 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
47963048 TGTACCTATC
*
47963058 TATTTTGATGGATGAAA-TTGAGATATTAAT
1 TATTTTGATGAAT-AAAGTTGAGATATTAAT
*
47963088 TATTTTGTTGAATAAATGTTGAGATATTAA
1 TATTTTGATGAATAAA-GTTGAGATATTAA
47963118 ATGAAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 11 0.42
31 12 0.46
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (30 bp):
TATTTTGATGAATAAAGTTGAGATATTAAT
Found at i:47963189 original size:33 final size:33
Alignment explanation
Indices: 47963152--47963226 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
47963142 CAAGTTGCCA
*
47963152 AATAAGACCATAGTCGGGCTATGGCA-ATCGAAT
1 AATAAGACCATAGCCGGGCTATGGCATA-CGAAT
*
47963185 AATAAGACCATAGCCGGGTTATGGCATACGAAT
1 AATAAGACCATAGCCGGGCTATGGCATACGAAT
*
47963218 GA-AAGACCA
1 AATAAGACCA
47963227 CGACAAGGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 7 0.18
33 30 0.79
34 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.19
Consensus pattern (33 bp):
AATAAGACCATAGCCGGGCTATGGCATACGAAT
Found at i:47969686 original size:21 final size:21
Alignment explanation
Indices: 47969662--47969730 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
47969652 GTGATTGAAC
47969662 TCATTAAGTTATGGTCTGAGT
1 TCATTAAGTTATGGTCTGAGT
* * * **
47969683 TCATGATA-TATGTGGCATCTAAAC
1 TCATTA-AGT-TATGG--TCTGAGT
47969707 TCATTAAGTTATGGTCTGAGT
1 TCATTAAGTTATGGTCTGAGT
47969728 TCA
1 TCA
47969731 CGATATATGT
Statistics
Matches: 33, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
21 13 0.39
22 5 0.15
23 5 0.15
24 10 0.30
ACGTcount: A:0.28, C:0.13, G:0.20, T:0.39
Consensus pattern (21 bp):
TCATTAAGTTATGGTCTGAGT
Found at i:47971132 original size:13 final size:13
Alignment explanation
Indices: 47971114--47971144 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
47971104 GCCACACGGG
*
47971114 CGTGTTACTTGGC
1 CGTGTTACTTGCC
47971127 CGTGTTACTTGCC
1 CGTGTTACTTGCC
47971140 CGTGT
1 CGTGT
47971145 GACCATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.06, C:0.26, G:0.29, T:0.39
Consensus pattern (13 bp):
CGTGTTACTTGCC
Found at i:47983569 original size:31 final size:31
Alignment explanation
Indices: 47983531--47983591 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
47983521 TTCATATTTC
* *
47983531 ATATTTCATAACACTGGGCTGAAGCCTTTTT
1 ATATTTCATAACACTAGGCCGAAGCCTTTTT
**
47983562 ATATTTCATATTACTAGGCCGAAGCCTTTT
1 ATATTTCATAACACTAGGCCGAAGCCTTTT
47983592 CTGTACACGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (31 bp):
ATATTTCATAACACTAGGCCGAAGCCTTTTT
Found at i:47983852 original size:24 final size:24
Alignment explanation
Indices: 47983802--47983923 Score: 178
Period size: 23 Copynumber: 5.2 Consensus size: 24
47983792 GGCCTAGCAT
* *
47983802 CTTTTAAAAACTAGGGCA-AAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
47983825 CTTTTAATAATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
47983849 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
47983873 C-TTGAATAACTGGTGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
47983896 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
47983919 CTTTT
1 CTTTT
47983924 GCACTTCCTC
Statistics
Matches: 89, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
23 57 0.64
24 32 0.36
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:47983881 original size:47 final size:47
Alignment explanation
Indices: 47983802--47983921 Score: 172
Period size: 47 Copynumber: 2.6 Consensus size: 47
47983792 GGCCTAGCAT
* * * *
47983802 CTTTTAAAAACTAGGGCA-AAGCCCTTTTAATAATTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCC-TTGAATAACTGGGGCATAAGCC
*
47983849 CTTTTAATAACTGGGGCATAAGCCCTTGAATAACTGGTGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTGAATAACTGGGGCATAAGCC
47983896 C-TTTAATAACTGGGGCATAAGCCCTT
1 CTTTTAATAACTGGGGCATAAGCCCTT
47983922 TTGCACTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
46 25 0.37
47 36 0.54
48 6 0.09
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTGAATAACTGGGGCATAAGCC
Found at i:47984004 original size:11 final size:11
Alignment explanation
Indices: 47983973--47984029 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
47983963 TTATGAATAC
*
47983973 ATCATGTGCAT
1 ATCATATGCAT
47983984 ATCATA--CAT
1 ATCATATGCAT
47983993 ATCATATGCAT
1 ATCATATGCAT
*
47984004 AGCATA--CAT
1 ATCATATGCAT
* *
47984013 TTCATGTGCAT
1 ATCATATGCAT
47984024 ATCATA
1 ATCATA
47984030 CAGACCATGT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:47984039 original size:20 final size:20
Alignment explanation
Indices: 47983973--47984031 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
47983963 TTATGAATAC
47983973 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
47983993 ATCATATGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
47984013 TTCATGTGCATATCATACA
1 ATCATGTGCATATCATACA
47984032 GACCATGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47986923 original size:43 final size:43
Alignment explanation
Indices: 47986860--47987022 Score: 188
Period size: 43 Copynumber: 3.8 Consensus size: 43
47986850 AGCTCACACA
* * * *
47986860 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCTCA-TATTG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGTA-CG
* * *
47986902 ATGCCAATGTCCCAGACATGGTCTTACATGAAAT-TGATTAACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGT-ACG
* * *
47986945 ATGCCAATGTCCCAGACATGGTCATACATGTAATCACAGTACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGTACG
*
47986988 ATGCCAATGTCCCATACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
47987023 ACATCTCGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
42 7 0.07
43 93 0.90
44 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCTCAGTACG
Found at i:47986973 original size:86 final size:85
Alignment explanation
Indices: 47986860--47987017 Score: 219
Period size: 86 Copynumber: 1.8 Consensus size: 85
47986850 AGCTCACACA
* * * * **
47986860 ATGCCATATCCCAGATATGGTCTTACATGTTATCTCA-TATTGATGCCAATGTCCCAGACATGGT
1 ATGCCATATCCCAGACATGGTCATACATGTAATCACAGTA-CAATGCCAATGTCCCAGACATGGT
47986924 CTTACATGAAATTGATTAACG
65 CTTACATGAAATTGATTAACG
* *
47986945 ATGCCAATGTCCCAGACATGGTCATACATGTAATCACAGTACAATGCCAATGTCCCATACATGGT
1 ATGCC-ATATCCCAGACATGGTCATACATGTAATCACAGTACAATGCCAATGTCCCAGACATGGT
47987010 CTTACATG
65 CTTACATG
47987018 TAATCACATC
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 5 0.08
86 56 0.89
87 2 0.03
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (85 bp):
ATGCCATATCCCAGACATGGTCATACATGTAATCACAGTACAATGCCAATGTCCCAGACATGGTC
TTACATGAAATTGATTAACG
Found at i:47993943 original size:42 final size:42
Alignment explanation
Indices: 47993888--47993974 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
47993878 ACCGTGTGAC
*
47993888 CTGACCGTATGTCACACACAACTGAGACACATGCCTGTGTCT
1 CTGACAGTATGTCACACACAACTGAGACACATGCCTGTGTCT
* * *
47993930 CTGACAGTGTGTCACACTCGACTGAGACACATGCCTGTGTCT
1 CTGACAGTATGTCACACACAACTGAGACACATGCCTGTGTCT
47993972 CTG
1 CTG
47993975 TCCATGTGGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (42 bp):
CTGACAGTATGTCACACACAACTGAGACACATGCCTGTGTCT
Found at i:48001876 original size:13 final size:14
Alignment explanation
Indices: 48001851--48001891 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
48001841 AAATAAGATA
48001851 AATAAATATAAAAGT
1 AATAAATA-AAAAGT
*
48001866 GA-AAATAAAAA-T
1 AATAAATAAAAAGT
48001878 AATAAATAAAAAGT
1 AATAAATAAAAAGT
48001892 TTTTAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.09
13 13 0.59
14 6 0.27
15 1 0.05
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
AATAAATAAAAAGT
Found at i:48010214 original size:47 final size:47
Alignment explanation
Indices: 48010163--48010295 Score: 191
Period size: 46 Copynumber: 2.9 Consensus size: 47
48010153 GAATTATGAG
48010163 GCATCCGAACTCGTTGAGTTGCATTCTGAGTTCACTTATGGATGCAA
1 GCATCCGAACTCGTTGAGTTGCATTCTGAGTTCACTTATGGATGCAA
** *
48010210 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTC-CTTATGGATGCAA
1 GCATCCGAACTCGTTGAGTTGCATTCTGAGTTCACTTATGGATGCAA
* *
48010256 ACA-CCTGAGCTCGTTGAGTTGCATTCTGAGTTCA-TTATGG
1 GCATCC-GAACTCGTTGAGTTGCATTCTGAGTTCACTTATGG
48010296 GTGAGATTAT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 2 0.03
46 44 0.58
47 30 0.39
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGCATTCTGAGTTCACTTATGGATGCAA
Found at i:48041783 original size:2 final size:2
Alignment explanation
Indices: 48041776--48041808 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
48041766 ATGTTTTGGC
48041776 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48041809 GAAGTTGAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48051779 original size:40 final size:39
Alignment explanation
Indices: 48051696--48051887 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
48051686 TTGAATGATG
* * * * *
48051696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
48051736 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
48051776 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
48051815 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
48051856 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
48051888 CGTTATATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:48051841 original size:79 final size:81
Alignment explanation
Indices: 48051696--48051887 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
48051686 TTGAATGATG
* * * *
48051696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
48051760 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
48051776 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
48051839 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
48051856 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
48051888 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:48051902 original size:79 final size:77
Alignment explanation
Indices: 48051696--48051913 Score: 206
Period size: 79 Copynumber: 2.7 Consensus size: 77
48051686 TTGAATGATG
* * * * *
48051696 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
48051760 CGTGCGAGTTAATAAA
62 CGTGCGAGTTAATAAA
* * * *
48051776 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGT-CCGAAGGCATTCG
*
48051841 TGCGAGTTACTATAA
64 TGCGAGTTAATA-AA
** ** *
48051856 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAGG
48051914 TACGTGATTC
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 65 0.56
80 50 0.43
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGTG
CGAGTTAATAAA
Found at i:48059790 original size:40 final size:39
Alignment explanation
Indices: 48059707--48059898 Score: 163
Period size: 40 Copynumber: 4.8 Consensus size: 39
48059697 TTGAATGATG
* * * * *
48059707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGC-GAGTTAATAAA
* *
48059747 TCCGGACTAAGATCCGAAGGCGTTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
48059787 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
* * *
48059826 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGTTAATA-AA
** * *
48059867 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGT-CCGAAGGCATTCGTGCGAGT
48059899 CGTTATATCC
Statistics
Matches: 128, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.26
40 86 0.67
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTCGTGCGAGTTAATAAA
Found at i:48059852 original size:79 final size:81
Alignment explanation
Indices: 48059707--48059898 Score: 232
Period size: 79 Copynumber: 2.4 Consensus size: 81
48059697 TTGAATGATG
* * * *
48059707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTGACTAAACCCGGACTAAGATCCGAAGGCATT
48059771 CGTGCGAGTTAATA-AA
65 CGTGCGAGTTAATATAA
* **
48059787 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
*
48059850 CGTGCGAGTTACTATAA
65 CGTGCGAGTTAATATAA
** *
48059867 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
48059899 CGTTATATCC
Statistics
Matches: 97, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.58
80 40 0.41
ACGTcount: A:0.24, C:0.23, G:0.29, T:0.24
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATATAA
Found at i:48059913 original size:79 final size:77
Alignment explanation
Indices: 48059707--48059924 Score: 206
Period size: 79 Copynumber: 2.7 Consensus size: 77
48059697 TTGAATGATG
* * * * *
48059707 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCGTT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGC-GAGTCACTATATCCGG-TTAAG-TCCGAAGGCATT
48059771 CGTGCGAGTTAATAAA
62 CGTGCGAGTTAATAAA
* * * *
48059787 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAACCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCC-GGTTAAGT-CCGAAGGCATTCG
*
48059852 TGCGAGTTACTATAA
64 TGCGAGTTAATA-AA
** ** *
48059867 -CCGGGCTTTGTCCCGAAGGCATTTGAGCGAGTCGTTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAGCGAGTCACTATATCCGGTT-AAGTCCGAAGG
48059925 TACGTGATTC
Statistics
Matches: 116, Mismatches: 16, Indels: 13
0.80 0.11 0.09
Matches are distributed among these distances:
78 1 0.01
79 65 0.56
80 50 0.43
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (77 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAGCGAGTCACTATATCCGGTTAAGTCCGAAGGCATTCGTG
CGAGTTAATAAA
Found at i:48061324 original size:33 final size:33
Alignment explanation
Indices: 48061282--48061371 Score: 135
Period size: 33 Copynumber: 2.7 Consensus size: 33
48061272 GTTTCAATTA
*
48061282 GGATTTAGCCTGGACTATTAATCCTAACTGACT
1 GGATTTAGCCTGGACTAGTAATCCTAACTGACT
* *
48061315 GGATTTAGCCTAGACTGGTAATCCTAACTGACT
1 GGATTTAGCCTGGACTAGTAATCCTAACTGACT
* *
48061348 GGATTTATCCTGGACTGGTAATCC
1 GGATTTAGCCTGGACTAGTAATCC
48061372 AGAATAAACT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (33 bp):
GGATTTAGCCTGGACTAGTAATCCTAACTGACT
Found at i:48075269 original size:50 final size:50
Alignment explanation
Indices: 48075157--48075446 Score: 228
Period size: 50 Copynumber: 5.8 Consensus size: 50
48075147 AGAACGCATT
* *** *
48075157 TGTAGTACTATA-TGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTG
1 TGTAGTACTA-AGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCACGTG
** *
48075209 TGTAGTACTAAGTATAGGCTACTACGTGTACCAGATAGTTAGGTCGCAG-G
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCAC-GTG
* * *** * * * *
48075259 TGTAGTACTAAGTGCAGGCTATTATGCAAACCCGACAACTTCA-ATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCACGTG
* * * *
48075310 TGCAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGTTCACGTG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTG
* * * *
48075360 TGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGTT-GGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTG
* * * * *
48075409 TGTTGTACTGAGTGCTGGCTACTATGCGTACCAGATAG
1 TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
48075447 CTTCGGTTAC
Statistics
Matches: 186, Mismatches: 46, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
49 38 0.20
50 82 0.44
51 36 0.19
52 30 0.16
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACGTG
Found at i:48075661 original size:16 final size:15
Alignment explanation
Indices: 48075640--48075669 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
48075630 GAATGGAGTA
48075640 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
48075656 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
48075670 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:48077817 original size:32 final size:32
Alignment explanation
Indices: 48077742--48077822 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
48077732 GTAGCGGTAT
* * * *
48077742 TATAATTGGCACAAAGCCATCGGTAACTGTAA
1 TATAATTGGCACATAGCCATCAGCAACAGTAA
* *
48077774 TA-AGTTCGGCACGTAGCCATCAGCAACAGTAA
1 TATAATT-GGCACATAGCCATCAGCAACAGTAA
48077806 TATAATTGGCACATAGC
1 TATAATTGGCACATAGC
48077823 TATGGGTAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
31 3 0.08
32 33 0.85
33 3 0.08
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.23
Consensus pattern (32 bp):
TATAATTGGCACATAGCCATCAGCAACAGTAA
Found at i:48077840 original size:27 final size:27
Alignment explanation
Indices: 48077804--48077899 Score: 70
Period size: 27 Copynumber: 3.6 Consensus size: 27
48077794 CAGCAACAGT
* *
48077804 AATATAATTGGCACATAGCTATGGGTA
1 AATATGATTGGCACATAGCTATAGGTA
* * * *
48077831 AATATGATTGACAAAGAG-TCATCA-ATA
1 AATATGATTGGCACATAGCT-AT-AGGTA
* * *
48077858 AATATGATAGGCACATAGCCACAGGTA
1 AATATGATTGGCACATAGCTATAGGTA
*
48077885 AATACGATTGGCACA
1 AATATGATTGGCACA
48077900 AAGCCATAAT
Statistics
Matches: 50, Mismatches: 15, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.24
Consensus pattern (27 bp):
AATATGATTGGCACATAGCTATAGGTA
Found at i:48078224 original size:14 final size:14
Alignment explanation
Indices: 48078202--48078235 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
48078192 AAAAGCATGC
48078202 CAGTCATACAACCA
1 CAGTCATACAACCA
* *
48078216 CAGTTATACAATCA
1 CAGTCATACAACCA
48078230 CAGTCA
1 CAGTCA
48078236 AATCAATCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.09, T:0.21
Consensus pattern (14 bp):
CAGTCATACAACCA
Found at i:48078382 original size:27 final size:27
Alignment explanation
Indices: 48078303--48078382 Score: 133
Period size: 27 Copynumber: 3.0 Consensus size: 27
48078293 TTTACCGTAC
*
48078303 AAGGGTATTTCGATAATTTTACAAACT
1 AAGGGTATTTCGATAATTTTACAAATT
**
48078330 GGGGGTATTTCGATAATTTTACAAATT
1 AAGGGTATTTCGATAATTTTACAAATT
48078357 AAGGGTATTTCGATAATTTTACAAAT
1 AAGGGTATTTCGATAATTTTACAAAT
48078383 CGGAGTCTTA
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (27 bp):
AAGGGTATTTCGATAATTTTACAAATT
Found at i:48080715 original size:27 final size:25
Alignment explanation
Indices: 48080671--48080848 Score: 99
Period size: 27 Copynumber: 6.6 Consensus size: 25
48080661 TTAGTTTACC
*
48080671 AAATTACTGAAATACCCCCAGTTGTA
1 AAATTAC-CAAATACCCCCAGTTGTA
* *
48080697 AAATTACCAAAGTACCCCCGGTTTATA
1 AAATTACCAAA-TACCCCCAG-TTGTA
* * *
48080724 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATA-CCCCCAGTTGTA
* *
48080751 AAATTACCGAAATACCCTCAATT-TACA
1 AAATTACC-AAATACCCCCAGTTGT--A
* * **
48080778 AAATTACTGAAATACCCTC-GATCAATA
1 AAATTAC-CAAATACCCCCAG-T-TGTA
*
48080805 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACC-AAATACCCCCAG-TTGTA
48080832 AAATTACCAAAATACCC
1 AAATTACC-AAATACCC
48080849 TTGGTTTACA
Statistics
Matches: 118, Mismatches: 21, Indels: 25
0.72 0.13 0.15
Matches are distributed among these distances:
25 4 0.03
26 22 0.19
27 81 0.69
28 10 0.08
29 1 0.01
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (25 bp):
AAATTACCAAATACCCCCAGTTGTA
Found at i:48080767 original size:54 final size:54
Alignment explanation
Indices: 48080695--48080876 Score: 186
Period size: 54 Copynumber: 3.4 Consensus size: 54
48080685 CCCCCAGTTG
* * * *
48080695 TAAAATTACC-AAAGTACCCCCGGTTTATAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCGAAA-TACCCCCAGTTTATAAAATTACCAAAATACCCTCGATTTA
* * * ** **
48080749 TAAAATTACCGAAATACCCTCAATTTACAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACCGAAATACCCCCAGTTTATAAAATTACCAAAATACCCTCGATTTA
* * * * *
48080803 TAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCGAAATACCCCCAGTTTATAAAATTACCAAAATACCCTCGATTTA
* *
48080857 CAAAATTATCGAAATACCCC
1 TAAAATTACCGAAATACCCC
48080877 TGTAGGGTAG
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
54 99 0.97
55 3 0.03
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCCCAGTTTATAAAATTACCAAAATACCCTCGATTTA
Found at i:48080806 original size:81 final size:81
Alignment explanation
Indices: 48080721--48080875 Score: 215
Period size: 81 Copynumber: 1.9 Consensus size: 81
48080711 CCCCCGGTTT
* * *
48080721 ATAAAATTACCCAAATATCCTCGA-TTTGTAAAATTACCGAAATACCCTCAATTTACAAAATTA-
1 ATAAAATTACCAAAATA-CCCCGAGTTTGTAAAATTACCAAAATACCCTCAATTTACAAAATTAT
48080784 CTGAAATACCCTCGATCA
65 C-GAAATACCCTCGATCA
* ***
48080802 ATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTATC
1 ATAAAATTACCAAAATACCCCGAGTTTGTAAAATTACCAAAATACCCTCAATTTACAAAATTATC
48080867 GAAATACCC
66 GAAATACCC
48080876 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 4 0.06
81 60 0.92
82 1 0.02
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.28
Consensus pattern (81 bp):
ATAAAATTACCAAAATACCCCGAGTTTGTAAAATTACCAAAATACCCTCAATTTACAAAATTATC
GAAATACCCTCGATCA
Found at i:48080855 original size:27 final size:27
Alignment explanation
Indices: 48080695--48080875 Score: 166
Period size: 27 Copynumber: 6.7 Consensus size: 27
48080685 CCCCCAGTTG
* * *
48080695 TAAAATTACCAAAGTACCCCCGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
48080722 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCAAAATACCCTCGATTTA
* *
48080749 TAAAATTACCGAAATACCCTCAATTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* ** **
48080776 CAAAATTACTGAAATACCCTCGATCAA
1 TAAAATTACCAAAATACCCTCGATTTA
* *
48080803 TAAAATTACCAAAATACCC-CTAGTTTG
1 TAAAATTACCAAAATACCCTCGA-TTTA
* *
48080830 TAAAATTACCAAAATACCCTTGGTTTA
1 TAAAATTACCAAAATACCCTCGATTTA
* * *
48080857 CAAAATTATCGAAATACCC
1 TAAAATTACCAAAATACCC
48080876 CTGTAGGGTA
Statistics
Matches: 123, Mismatches: 29, Indels: 4
0.79 0.19 0.03
Matches are distributed among these distances:
26 2 0.02
27 121 0.98
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.28
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATTTA
Found at i:48080890 original size:27 final size:27
Alignment explanation
Indices: 48080860--48081108 Score: 356
Period size: 27 Copynumber: 9.3 Consensus size: 27
48080850 TGGTTTACAA
*
48080860 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
48080887 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
48080914 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
48080941 AATTATCGAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
48080968 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
48080995 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
48081022 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
48081049 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
48081076 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
48081102 AATTACC
1 AATTACC
48081109 ATTTTGCCCC
Statistics
Matches: 199, Mismatches: 23, Indels: 1
0.89 0.10 0.00
Matches are distributed among these distances:
26 16 0.08
27 183 0.92
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:48080891 original size:81 final size:79
Alignment explanation
Indices: 48080803--48081106 Score: 297
Period size: 81 Copynumber: 3.8 Consensus size: 79
48080793 CCTCGATCAA
** * *
48080803 TAAAATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTATC
1 TAAAATTACCAAAATACCCCT-GTAGGGTAAAATTACCGAAATACCCTTGGTGT--AAAATTATC
48080867 GAAATACCCCTGTAGGG
63 GAAATACCCCTGTAGGG
* * ** * *
48080884 TAGAATTATCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGG-GTAGAATTATC
1 TAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATA-CCCT-T-GGTGTAAAATTATC
48080948 GAAATACCCCTGTAGGG
63 GAAATACCCCTGTAGGG
* * * * * * *
48080965 TAAAATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTTGTAGGGTAGAATTACCG
1 TAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTG--GTGTAAAATTATCG
48081030 AAATACCCCTGTAGGG
64 AAATACCCCTGTAGGG
* * ** * * *
48081046 TAGAATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGATACCTTGTGGGGTAAAATTA
1 TAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCT-TGGTGTAAAATTA
48081107 CCATTTTGCC
Statistics
Matches: 190, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 1 0.01
80 17 0.09
81 161 0.85
82 6 0.03
83 2 0.01
84 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (79 bp):
TAAAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCTTGGTGTAAAATTATCGAA
ATACCCCTGTAGGG
Found at i:48081587 original size:22 final size:22
Alignment explanation
Indices: 48081535--48081599 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
48081525 TTAAAGCCTT
* *
48081535 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
48081557 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
48081579 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
48081600 ATGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:48081788 original size:27 final size:26
Alignment explanation
Indices: 48081758--48081859 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
48081748 ATTCTGTTAA
* *
48081758 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
48081785 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCAC-AATATCTGTTCTG
* *
48081812 GTGGCTCTGCCACAATATCTGCATCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
* * * *
48081839 GTGACTCTGTCATAATATCTG
1 GTGGCTATGCCACAATATCTG
48081860 ATAACTGAGT
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.12
27 51 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:48082029 original size:31 final size:31
Alignment explanation
Indices: 48081991--48082061 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
48081981 TTGCATTCAC
*
48081991 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
*
48082022 ATTCTGATTTTGATTCTGTTACCTGATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
48082053 ATTCTGATT
1 ATTCTGATT
48082062 CTAGTTCTGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.18, C:0.14, G:0.15, T:0.52
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:48082030 original size:6 final size:6
Alignment explanation
Indices: 48081991--48082072 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
48081981 TTGCATTCAC
* * * *
48081991 ATTCTG ATTTTG ATTTTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
48082040 -TTACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATT--CTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
48082073 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
5 5 0.08
6 48 0.77
7 6 0.10
8 3 0.05
ACGTcount: A:0.18, C:0.15, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:48082047 original size:25 final size:24
Alignment explanation
Indices: 48081994--48082063 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 24
48081984 CATTCACATT
*
48081994 CTGATTTTGATTTTG-TTACCTGATA
1 CTGATTCTGATTTTGATT--CTGATA
*
48082019 CTGATTCTGATTTTGATTCTGTTA
1 CTGATTCTGATTTTGATTCTGATA
*
48082043 CCTGATTCTGATTCTGATTCT
1 -CTGATTCTGATTTTGATTCT
48082064 AGTTCTGATA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
24 5 0.12
25 33 0.82
26 2 0.05
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (24 bp):
CTGATTCTGATTTTGATTCTGATA
Found at i:48082070 original size:31 final size:31
Alignment explanation
Indices: 48081991--48082070 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
48081981 TTGCATTCAC
* *
48081991 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTTAGATTCTGTTACCTGATACTG
* *
48082022 ATTCTGATTTTGATTCTGTTACCTGATTCTG
1 ATTCTGATTTAGATTCTGTTACCTGATACTG
48082053 ATTCTGATTCTAG-TTCTG
1 ATTCTGATT-TAGATTCTG
48082071 ATAATGTTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
31 43 0.96
32 2 0.04
ACGTcount: A:0.17, C:0.15, G:0.16, T:0.51
Consensus pattern (31 bp):
ATTCTGATTTAGATTCTGTTACCTGATACTG
Found at i:48088581 original size:93 final size:93
Alignment explanation
Indices: 48088469--48088638 Score: 313
Period size: 93 Copynumber: 1.8 Consensus size: 93
48088459 GCCCATAAGT
* *
48088469 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48088534 CGAGTTCGGATGGCTAGTTACATCTCAC
66 CGAGTTCGGATGGCTAGTTACATCTCAC
*
48088562 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
48088627 CGAGTTCGGATG
66 CGAGTTCGGATG
48088639 CCCAAATATC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGGCTAGTTACATCTCAC
Found at i:48088636 original size:46 final size:46
Alignment explanation
Indices: 48088461--48088636 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
48088451 CGTAACCTGC
* * *
48088461 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
48088507 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGGCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-CGCTCG---CAT
* *
48088557 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
48088600 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48088637 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:48091227 original size:12 final size:14
Alignment explanation
Indices: 48091212--48091244 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
48091202 GTGAGAACAC
48091212 ATGTGTA-G-TACT
1 ATGTGTAGGTTACT
48091224 ATGTGTAGGTTACT
1 ATGTGTAGGTTACT
48091238 ATGTGTA
1 ATGTGTA
48091245 CCAGATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 1 0.05
14 11 0.58
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.42
Consensus pattern (14 bp):
ATGTGTAGGTTACT
Found at i:48091288 original size:50 final size:50
Alignment explanation
Indices: 48091209--48091452 Score: 231
Period size: 50 Copynumber: 4.9 Consensus size: 50
48091199 ATTGTGAGAA
* * *
48091209 CACATGTGTAGTACTATGTGTAGGTTACTATGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* ** * * * *
48091259 CTCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTTA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TA-GTTAGGT
* * * ** *
48091310 CACGTGTGTAATACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * * * *
48091360 CACGTGTGTAGTACTAAGTGCAGGGTACAATGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * **
48091409 CGCATGTGTAGTACTAAGTGCTGGCTACTATGCATACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
48091453 CTCTAGTTAC
Statistics
Matches: 151, Mismatches: 40, Indels: 7
0.76 0.20 0.04
Matches are distributed among these distances:
49 41 0.27
50 73 0.48
51 34 0.23
52 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:48091671 original size:16 final size:15
Alignment explanation
Indices: 48091650--48091679 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
48091640 GAATGAAGTA
48091650 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
48091666 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
48091680 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:48094091 original size:43 final size:42
Alignment explanation
Indices: 48094029--48094152 Score: 117
Period size: 42 Copynumber: 2.9 Consensus size: 42
48094019 TCTCAGATGT
* *
48094029 GGTCTTACATGTAAACAAATATCGATTCCACTGTCCCAGACAC
1 GGTCTTACATGTAAACAAATA-CGATGCCAATGTCCCAGACAC
* ***
48094072 GGTCTTACGTG-AAATCAAATACGATGCCAATGTCCCAGATGT
1 GGTCTTACATGTAAA-CAAATACGATGCCAATGTCCCAGACAC
* *
48094114 GGTCTTACACGTAAATCATAAGT-TGATGCCAATGTCCCA
1 GGTCTTACATGTAAA-CA-AA-TACGATGCCAATGTCCCA
48094153 AATGTGGTCT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 28 0.41
43 22 0.32
44 17 0.25
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAAACAAATACGATGCCAATGTCCCAGACAC
Found at i:48094152 original size:44 final size:43
Alignment explanation
Indices: 48094010--48094166 Score: 160
Period size: 44 Copynumber: 3.7 Consensus size: 43
48094000 AGCTCGTACA
* * *
48094010 ATGCCAACGTCTCAGATGTGGTCTTACATGTAAA-CAAATATCG
1 ATGCCAATGTCCCAGATGTGGTCTTACACGTAAATCAAATAT-G
* * *** *
48094053 ATTCCACTGTCCCAGACACGGTCTT--ACGTGAAATCAAATACG
1 ATGCCAATGTCCCAGATGTGGTCTTACACGT-AAATCAAATATG
48094095 ATGCCAATGTCCCAGATGTGGTCTTACACGTAAATCATAAGT-TG
1 ATGCCAATGTCCCAGATGTGGTCTTACACGTAAATCA-AA-TATG
*
48094139 ATGCCAATGTCCCAAATGTGGTCTTACA
1 ATGCCAATGTCCCAGATGTGGTCTTACA
48094167 TGAAAACACA
Statistics
Matches: 92, Mismatches: 16, Indels: 11
0.77 0.13 0.09
Matches are distributed among these distances:
41 3 0.03
42 24 0.26
43 30 0.33
44 34 0.37
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGATGTGGTCTTACACGTAAATCAAATATG
Found at i:48097648 original size:21 final size:21
Alignment explanation
Indices: 48097624--48097663 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
48097614 TACAATCCTA
48097624 TTAAAAATAAT-TTATTAAATC
1 TTAAAAA-AATCTTATTAAATC
*
48097645 TTAATAAAATCTTATTAAA
1 TTAAAAAAATCTTATTAAA
48097664 CCAAACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAAAATCTTATTAAATC
Found at i:48097652 original size:24 final size:26
Alignment explanation
Indices: 48097606--48097653 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
48097596 AGTTCATATA
*
48097606 AATTTATTTACAATCCTATTAAAAAT
1 AATTTATTTACAATCCTAATAAAAAT
*
48097632 AATTTA-TTA-AATCTTAATAAAA
1 AATTTATTTACAATCCTAATAAAA
48097654 TCTTATTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 3 0.15
26 6 0.30
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (26 bp):
AATTTATTTACAATCCTAATAAAAAT
Found at i:48098321 original size:23 final size:23
Alignment explanation
Indices: 48098290--48098335 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
48098280 GAAATTATAA
*
48098290 TAATTCCATCAAAATTAGCAACT
1 TAATACCATCAAAATTAGCAACT
*
48098313 TAATACCATCAACATTAGCAACT
1 TAATACCATCAAAATTAGCAACT
48098336 ATATATTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.24, G:0.04, T:0.28
Consensus pattern (23 bp):
TAATACCATCAAAATTAGCAACT
Found at i:48102227 original size:6 final size:6
Alignment explanation
Indices: 48102175--48102208 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
48102165 ATAGATTTAG
*
48102175 ATTCAC ATTCAC ATTCAC ATTCAC ATTCAG ATTC
1 ATTCAC ATTCAC ATTCAC ATTCAC ATTCAC ATTC
48102209 TGATTCAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.35
Consensus pattern (6 bp):
ATTCAC
Found at i:48105611 original size:43 final size:42
Alignment explanation
Indices: 48105537--48105641 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 42
48105527 GAGATTACGC
* *
48105537 GTAAGACCATATCTGGGATATGGCATCGATATTAGACTT-CGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCCAT
* * *
48105579 GTAAGACTATAGCTGGGCTATTGGCATCGATATGAGATTCCAT
1 GTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTCCAT
48105622 GTAAGACCATATCTGGGATA
1 GTAAGACCATATCTGGGATA
48105642 CGACATTGGT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 19 0.36
43 34 0.64
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGATTCCAT
Found at i:48112537 original size:46 final size:46
Alignment explanation
Indices: 48112431--48112644 Score: 188
Period size: 46 Copynumber: 4.6 Consensus size: 46
48112421 GTAAGGTGCT
* * * *
48112431 GATGCCATGTCCCAGACATGGTTTTACACT-G-ATACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCCCG-AGGCC
*
48112477 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCC
* * * * * *
48112523 GATGCATGTCCCAGACATGTCTTACTCTAGCTTTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCC
* * *
48112569 AATGCTATGTCCCAGACATGGTCTTACACTGGC-T-C-TCACAATGTGGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-C--CGAGGCC
48112617 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
48112645 AGCTCGCATA
Statistics
Matches: 139, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 9 0.06
45 18 0.13
46 67 0.48
47 27 0.19
48 18 0.13
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCC
Found at i:48112621 original size:94 final size:92
Alignment explanation
Indices: 48112478--48112648 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 92
48112468 CTCGTAGCCG
*
48112478 ATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCTGATGCATGTCCCAGACATGT
1 ATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCCGATGCATGTCCCAGACATGT
*
48112543 CTTACTCTAGCTTTCGTCTCAATGCCA
66 CTTACACTAGCTTTCGTCTCAATGCCA
* *
48112570 ATGCTATGTCCCAGACATGGTCTTACACTGGC-T-C-TCACAATGTGGCCGATGCATGTCCCAGA
1 ATGC-ATGTCCCAGACAT-GTCTTACACTGGCTTACGTC-C--CGAGGCCGATGCATGTCCCAGA
48112632 CATGTCTTACACTAGCT
61 CATGTCTTACACTAGCT
48112649 CGCATACATG
Statistics
Matches: 70, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
91 2 0.03
92 6 0.09
93 14 0.20
94 48 0.69
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.29
Consensus pattern (92 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCCGATGCATGTCCCAGACATGT
CTTACACTAGCTTTCGTCTCAATGCCA
Found at i:48113029 original size:30 final size:30
Alignment explanation
Indices: 48112988--48113045 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
48112978 AAATTCACAT
* *
48112988 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
48113018 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
48113046 TATTTGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:48114454 original size:11 final size:10
Alignment explanation
Indices: 48114428--48114453 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
48114418 ATATTAGCAT
48114428 AAAAAATTCA
1 AAAAAATTCA
48114438 AAAAAATTCA
1 AAAAAATTCA
48114448 AAAAAA
1 AAAAAA
48114454 AAGGAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATTCA
Done.