Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 164 of 328
Found at i:48119215 original size:18 final size:18
Alignment explanation
Indices: 48119195--48119228 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
48119185 CAAAAGAACA
48119195 AAAAAAAAGT-GAAAAAG
1 AAAAAAAAGTGGAAAAAG
*
48119212 AAAAGAAAGTGGAAAAA
1 AAAAAAAAGTGGAAAAA
48119229 AAGAGAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.06
Consensus pattern (18 bp):
AAAAAAAAGTGGAAAAAG
Found at i:48120697 original size:99 final size:100
Alignment explanation
Indices: 48120492--48120715 Score: 285
Period size: 99 Copynumber: 2.3 Consensus size: 100
48120482 TGAGGTCCCG
* * * * *
48120492 TGTGTAGTACTAAGTGCA-GCTACTATGTGTACCAGATTATTGGTCGCATGTGTAGTACTAATTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGATTGGTCACATGTGTAGTACTAAGTG
* *
48120556 CAGGATACTATGCGTACCCGATAACTTCGATCACG
66 CAGGATACTACGCGTACCCGATAACTTCGATCACA
* * *
48120591 TGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGATT-GGTCACATGTGTAGTACTAAGT
* * *
48120656 GCAGGCTACTACGTGTA-CCGAATAA-TT-GGTCACA
65 GCAGGATACTACGCGTACCCG-ATAACTTCGATCACA
48120690 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
48120716 TGCGTTCCAA
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
99 49 0.45
100 23 0.21
101 37 0.34
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATGATTGGTCACATGTGTAGTACTAAGTG
CAGGATACTACGCGTACCCGATAACTTCGATCACA
Found at i:48120706 original size:49 final size:50
Alignment explanation
Indices: 48120492--48120715 Score: 258
Period size: 49 Copynumber: 4.5 Consensus size: 50
48120482 TGAGGTCCCG
* * *
48120492 TGTGTAGTACTAAGTGCA-GCTACTATGTGTACCAGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * * * * *
48120540 TGTGTAGTACTAATTGCAGGATACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * ** *
48120591 TGTGTAGTACTAAGTGCAGGCTACTACGTATATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
48120641 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATTAGGTCACA
48120690 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
48120716 TGCGTTCCAA
Statistics
Matches: 148, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 17 0.11
49 50 0.34
50 46 0.31
51 35 0.24
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Found at i:48130605 original size:40 final size:39
Alignment explanation
Indices: 48130437--48130607 Score: 159
Period size: 40 Copynumber: 4.3 Consensus size: 39
48130427 AGAAATTGAA
* *
48130437 TGATATCCGGGCTAAGCCCCGAAGACAATTATGCTG-AAAT-
1 TGATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATG
* * * * *
48130477 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
* *
48130517 CT-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG
1 -TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-ATG
* *
48130557 TTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG
1 TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAAT-G
48130597 TGATATCCGGG
1 TGATATCCGGG
48130608 TAAAGTCCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.02
38 4 0.04
39 4 0.04
40 95 0.89
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATG
Found at i:48143199 original size:27 final size:28
Alignment explanation
Indices: 48143142--48143211 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
48143132 AAATTTGTAC
**
48143142 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
48143170 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
48143197 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48143212 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:48143220 original size:27 final size:27
Alignment explanation
Indices: 48143142--48143223 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
48143132 AAATTTGTAC
* *
48143142 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
48143170 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
48143197 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
48143224 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:48146244 original size:96 final size:94
Alignment explanation
Indices: 48146131--48146328 Score: 306
Period size: 96 Copynumber: 2.1 Consensus size: 94
48146121 AGGCAAGGCA
* * * *
48146131 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
* *
48146196 ATGCACATATGTGTGATAAGGCCGAATGGCC
66 ATG--CATATATGTGATAAGGCAGAATGGCC
* *
48146227 AATGTGATAAATGTGAACATGCACATATGTGATAAGGTCGAATGGTCAATGTGATAAATGTGAAC
1 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
48146292 ATGCATATATGTGATAAGGCAGAATGGCC
66 ATGCATATATGTGATAAGGCAGAATGGCC
48146321 AATGTGAT
1 AATGTGAT
48146329 GAACGTGGAA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
94 32 0.34
96 62 0.66
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (94 bp):
AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
ATGCATATATGTGATAAGGCAGAATGGCC
Found at i:48146281 original size:22 final size:22
Alignment explanation
Indices: 48146158--48146283 Score: 67
Period size: 22 Copynumber: 5.4 Consensus size: 22
48146148 CATGCATATG
* *
48146158 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGTCGAATGGACAA
* *
48146180 TGTGATGAATGT-GAACATGCACATA
1 TGTGAT-AAGGTCG-A-ATGGACA-A
* *
48146205 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGTCGAATGGACAA
* *
48146229 TGTGATAAATGT-GAACATGCACATA
1 TGTGAT-AAGGTCG-A-ATGGACA-A
*
48146254 TGTGATAAGGTCGAATGGTCAA
1 TGTGATAAGGTCGAATGGACAA
48146276 TGTGATAA
1 TGTGATAA
48146284 ATGTGAACAT
Statistics
Matches: 77, Mismatches: 15, Indels: 24
0.66 0.13 0.21
Matches are distributed among these distances:
22 23 0.30
23 13 0.17
24 16 0.21
25 14 0.18
26 4 0.05
27 7 0.09
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGTCGAATGGACAA
Found at i:48146348 original size:47 final size:47
Alignment explanation
Indices: 48146131--48146331 Score: 312
Period size: 47 Copynumber: 4.2 Consensus size: 47
48146121 AGGCAAGGCA
*
48146131 AATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
48146178 AATGTGATGAATGTGAACATGCACATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATG--CATATATGTGATAAGGCCGAATGGCC
* * * *
48146227 AATGTGATAAATGTGAACATGCACATATGTGATAAGGTCGAATGGTC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
48146274 AATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
48146321 AATGTGATGAA
1 AATGTGATGAA
48146332 CGTGGAAGTG
Statistics
Matches: 142, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
47 96 0.68
49 46 0.32
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:48146402 original size:46 final size:46
Alignment explanation
Indices: 48146347--48146437 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
48146337 AAGTGTATAT
* *
48146347 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
48146393 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
48146438 TGTATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:48148196 original size:40 final size:40
Alignment explanation
Indices: 48148141--48148295 Score: 251
Period size: 40 Copynumber: 3.9 Consensus size: 40
48148131 GATTATTCGA
*
48148141 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
48148181 ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
*
48148221 ATGTATCTGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
* *
48148261 ATATATCCGGGCTAA-ACCTCAAAG-GCATTCGTGCT
1 ATGTATCCGGGCTAAGTCC-CAAAGAGCATTCGTGCT
48148296 GGAATCATGA
Statistics
Matches: 109, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 13 0.12
40 96 0.88
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
Found at i:48148393 original size:57 final size:57
Alignment explanation
Indices: 48148303--48148413 Score: 159
Period size: 57 Copynumber: 1.9 Consensus size: 57
48148293 GCTGGAATCA
* *
48148303 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTAGT
** * * *
48148360 TGAGGCACTATGTGTGTGAGTTCTTTAATCGAGCACTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGT
48148414 CAGTGGGCAC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTATGTGTGCCAAATCAGTAGT
Found at i:48152374 original size:22 final size:22
Alignment explanation
Indices: 48152347--48152423 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
48152337 TGCACATATG
48152347 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
48152369 TGTGATAAATG-TGAACAT-GCACATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
48152394 TGTGATAAGGCCGAATGGTCAA
1 TGTGATAAGGCCGAATGGCCAA
48152416 TGTGATAA
1 TGTGATAA
48152424 ATGTGAACAT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.37
23 10 0.23
24 9 0.21
25 8 0.19
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:48152403 original size:96 final size:94
Alignment explanation
Indices: 48152271--48152468 Score: 306
Period size: 96 Copynumber: 2.1 Consensus size: 94
48152261 AGCCAAGGCA
* * * * *
48152271 AATGTGATGAATGTGAACATGCATATGTGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
* *
48152336 ATGCACATATGTGTGATAAGGCCGAATGGCC
66 ATG--CATATATGTGATAAGGCAGAATGGCC
*
48152367 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGTCAATGTGATAAATGTGAAC
1 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
48152432 ATGCATATATGTGATAAGGCAGAATGGCC
66 ATGCATATATGTGATAAGGCAGAATGGCC
48152461 AATGTGAT
1 AATGTGAT
48152469 GAACGTGGAA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
94 32 0.34
96 62 0.66
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (94 bp):
AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAAATGTGAAC
ATGCATATATGTGATAAGGCAGAATGGCC
Found at i:48152468 original size:22 final size:22
Alignment explanation
Indices: 48152347--48152468 Score: 58
Period size: 22 Copynumber: 5.3 Consensus size: 22
48152337 TGCACATATG
*
48152347 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
48152369 TGTGATAAATGTG-A-ACAT-GCACATA
1 TGTGAT-AA-G-GCAGA-ATGGC-CA-A
* *
48152394 TGTGATAAGGCCGAATGGTCAA
1 TGTGATAAGGCAGAATGGCCAA
*
48152416 TGTGATAAATGTG-A-ACAT-GCATATA
1 TGTGAT-AA-G-GCAGA-ATGGC-CA-A
48152441 TGTGATAAGGCAGAATGGCCAA
1 TGTGATAAGGCAGAATGGCCAA
48152463 TGTGAT
1 TGTGAT
48152469 GAACGTGGAA
Statistics
Matches: 75, Mismatches: 7, Indels: 36
0.64 0.06 0.31
Matches are distributed among these distances:
22 22 0.29
23 19 0.25
24 18 0.24
25 16 0.21
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCAGAATGGCCAA
Found at i:48152488 original size:47 final size:47
Alignment explanation
Indices: 48152271--48152471 Score: 312
Period size: 47 Copynumber: 4.2 Consensus size: 47
48152261 AGCCAAGGCA
* *
48152271 AATGTGATGAATGTGAACATGCATATGTGTGGTAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
*
48152318 AATGTGATGAATGTGAACATGCACATATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATG--CATATATGTGATAAGGCCGAATGGCC
* * *
48152367 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGTC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
* *
48152414 AATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCC
1 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
48152461 AATGTGATGAA
1 AATGTGATGAA
48152472 CGTGGAAGTG
Statistics
Matches: 143, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
47 98 0.69
49 45 0.31
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
Found at i:48152491 original size:96 final size:95
Alignment explanation
Indices: 48152271--48152513 Score: 301
Period size: 96 Copynumber: 2.5 Consensus size: 95
48152261 AGCCAAGGCA
* * * *
48152271 AATGTGATGAATGTGAACATGCATATGTGTGGTAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 AATGTGATAAACGTGAACATGCATATATGTGGTAAGGCCGAATGGCCAATGTGATAAATGTGAAC
* *
48152336 ATGCACATATGTGTGATAAGGCCGAATGGCC
66 ATG-ACATATATGTGATAAGGCAGAATGGCC
* * * *
48152367 AATGTGATAAATGTGAACATGCACATATGTGATAAGGCCGAATGGTCAATGTGATAAATGTGAAC
1 AATGTGATAAACGTGAACATGCATATATGTGGTAAGGCCGAATGGCCAATGTGATAAATGTGAAC
48152432 ATG-CATATATGTGATAAGGCAGAATGGCC
66 ATGACATATATGTGATAAGGCAGAATGGCC
* * * * *
48152461 AATGTGATGAACGTGGAA-GTGTATATATATGTGGTAAAGCCGAATGGCTAATG
1 AATGTGATAAACGT-GAACATG--CATATATGTGGTAAGGCCGAATGGCCAATG
48152514 CGAAATGTGT
Statistics
Matches: 127, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
94 38 0.30
95 3 0.02
96 86 0.68
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.26
Consensus pattern (95 bp):
AATGTGATAAACGTGAACATGCATATATGTGGTAAGGCCGAATGGCCAATGTGATAAATGTGAAC
ATGACATATATGTGATAAGGCAGAATGGCC
Found at i:48152542 original size:46 final size:46
Alignment explanation
Indices: 48152487--48152577 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
48152477 AAGTGTATAT
* *
48152487 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
48152533 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
48152578 TGTATATATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.34, C:0.08, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:48154713 original size:30 final size:30
Alignment explanation
Indices: 48154679--48154739 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
48154669 TCCTTAACTC
48154679 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
48154709 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
48154739 A
1 A
48154740 GGCTAGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:48163487 original size:22 final size:22
Alignment explanation
Indices: 48163462--48163503 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
48163452 GAAGAAGGAA
* * *
48163462 GAAAGGAAAAGGAAAGAGAATG
1 GAAAAGAAAAAGAAAAAGAATG
48163484 GAAAAGAAAAAGAAAAAGAA
1 GAAAAGAAAAAGAAAAAGAA
48163504 GAACTAACAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (22 bp):
GAAAAGAAAAAGAAAAAGAATG
Found at i:48178125 original size:23 final size:23
Alignment explanation
Indices: 48178099--48178170 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 23
48178089 ATAGAATTCA
*
48178099 AAAAAT-AAAGACAAAATAAACAT
1 AAAAATAAAAGA-AAAATAAAAAT
* *
48178122 AAAAAGAAAAGGAAAATAAAAAT
1 AAAAATAAAAGAAAAATAAAAAT
*
48178145 -AAAATAAAAATAAAAATAAAAAT
1 AAAAAT-AAAAGAAAAATAAAAAT
48178168 AAA
1 AAA
48178171 CCTAAAGATA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 4 0.10
23 30 0.75
24 6 0.15
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (23 bp):
AAAAATAAAAGAAAAATAAAAAT
Found at i:48178176 original size:12 final size:11
Alignment explanation
Indices: 48178100--48178170 Score: 72
Period size: 11 Copynumber: 6.3 Consensus size: 11
48178090 TAGAATTCAA
* *
48178100 AAAATAAAGAC
1 AAAATAAAAAT
*
48178111 AAAATAAACAT
1 AAAATAAAAAT
*
48178122 AAAA-AGAAAAGG
1 AAAATA-AAAA-T
48178134 AAAATAAAAAT
1 AAAATAAAAAT
48178145 AAAATAAAAAT
1 AAAATAAAAAT
48178156 AAAAATAAAAAT
1 -AAAATAAAAAT
48178168 AAA
1 AAA
48178171 CCTAAAGATA
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
10 1 0.02
11 30 0.59
12 19 0.37
13 1 0.02
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.13
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:48178182 original size:6 final size:6
Alignment explanation
Indices: 48178111--48178170 Score: 70
Period size: 6 Copynumber: 10.3 Consensus size: 6
48178101 AAATAAAGAC
* * **
48178111 AAAATA AACATA AAAA-G AAAAGG AAAATA AAAAT- AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
48178157 AAAATA AAAATA AA
1 AAAATA AAAATA AA
48178171 CCTAAAGATA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
5 9 0.19
6 38 0.81
ACGTcount: A:0.80, C:0.02, G:0.05, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:48182931 original size:68 final size:68
Alignment explanation
Indices: 48182784--48182939 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
48182774 CTAGCCATTT
* * * * *
48182784 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
48182849 TATC
65 TATA
* *
48182853 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
48182915 ATATAGTA
62 ATATA-TA
48182923 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
48182940 TCACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:48188776 original size:40 final size:40
Alignment explanation
Indices: 48188566--48188768 Score: 352
Period size: 40 Copynumber: 5.1 Consensus size: 40
48188556 CAATTAAGGA
* *
48188566 TTATATCCGGGTTAAGTCCCGAAGGCATTCATGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
48188606 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
48188646 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
*
48188686 TTATTTCTGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
* *
48188726 CTATTTCCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTTG
1 TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
48188766 TTA
1 TTA
48188769 CATCCGGGCT
Statistics
Matches: 156, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 156 1.00
ACGTcount: A:0.16, C:0.19, G:0.29, T:0.36
Consensus pattern (40 bp):
TTATTTCCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTG
Found at i:48193645 original size:68 final size:68
Alignment explanation
Indices: 48193498--48193653 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
48193488 AGCCGATTTG
* * * * *
48193498 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
48193563 TATC
65 TATA
* *
48193567 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
48193629 ATATAGTA
62 ATATA-TA
48193637 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
48193654 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:48200820 original size:68 final size:68
Alignment explanation
Indices: 48200673--48200828 Score: 149
Period size: 68 Copynumber: 2.2 Consensus size: 68
48200663 AGCCGATTTG
* * * * *
48200673 TCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATT
1 TCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACATA
*
48200738 TATC
65 TATA
* *
48200742 TCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTACT
1 TCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTAC-
48200804 ATATAGTA
62 ATATA-TA
48200812 TCTCGTAGC-CTTCTTGT
1 TCTCGTAGCTC-TCTTGT
48200829 ACACATGATG
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 7 0.10
70 6 0.08
71 26 0.36
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.35
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACATAT
ATA
Found at i:48219272 original size:15 final size:15
Alignment explanation
Indices: 48219252--48219282 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
48219242 TTACATTGGG
48219252 TACCGTTATCGATTA
1 TACCGTTATCGATTA
48219267 TACCGTTATCGATTA
1 TACCGTTATCGATTA
48219282 T
1 T
48219283 TTCAGACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.42
Consensus pattern (15 bp):
TACCGTTATCGATTA
Found at i:48221919 original size:40 final size:40
Alignment explanation
Indices: 48221860--48222027 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
48221850 CGGGACTTTA
* * *
48221860 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
48221900 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
48221940 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
48221980 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGG-CTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
48222019 CCCGGATAT
1 CCCGGATAT
48222028 CATTCAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 14 0.13
40 86 0.81
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:48229938 original size:40 final size:40
Alignment explanation
Indices: 48229879--48230047 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
48229869 CGGGACTTTA
* * *
48229879 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
48229919 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
48229959 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
48229999 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
48230039 CCCGGATAT
1 CCCGGATAT
48230048 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:48233227 original size:40 final size:40
Alignment explanation
Indices: 48233182--48233348 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
48233172 CGGAATATAA
48233182 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
48233222 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
48233262 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48233302 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
48233341 CCGGATAT
1 CCGGATAT
48233349 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48241163 original size:40 final size:40
Alignment explanation
Indices: 48241118--48241285 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
48241108 CGGAATATAA
48241118 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48241158 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48241198 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48241238 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
48241278 CCGGATAT
1 CCGGATAT
48241286 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48241268 original size:80 final size:80
Alignment explanation
Indices: 48241134--48241283 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48241124 ATAATCACGT
*
48241134 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48241198 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48241214 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48241277 CCCGGAT
64 CCCGGAT
48241284 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48244367 original size:40 final size:40
Alignment explanation
Indices: 48244312--48244493 Score: 219
Period size: 40 Copynumber: 4.6 Consensus size: 40
48244302 TATTCGGATG
*
48244312 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTG-CT
*
48244352 ATATCCGAGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCGAGTTGCT
** *
48244392 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAG-TGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTG-CT
* * *
48244432 ATATCCGGGCTAAGACCCGAAGGCATTTGTGGGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTGCT
* *
48244472 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
48244494 TACTTGGGTT
Statistics
Matches: 125, Mismatches: 12, Indels: 11
0.84 0.08 0.07
Matches are distributed among these distances:
39 16 0.13
40 104 0.83
41 5 0.04
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCGAGTTGCT
Found at i:48244445 original size:80 final size:80
Alignment explanation
Indices: 48244312--48244493 Score: 276
Period size: 80 Copynumber: 2.3 Consensus size: 80
48244302 TATTCGGATG
* * *
48244312 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACTATATCCGAGCTAAGTCCCGAAGGCG
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
48244377 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
** *
48244392 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
*
48244457 TTTGTGGGAGTTGCT
66 TTTGTGCGAGTTGCT
* *
48244472 ATATCC-GGCTAAATCTCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
48244494 TACTTGGGTT
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 14 0.15
80 79 0.85
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTAGTGACTATATCCGAGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:48248215 original size:40 final size:40
Alignment explanation
Indices: 48248121--48248345 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 40
48248111 TATTCGAATG
* *
48248121 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GCGACT
* * * * *
48248162 ATAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-CGACT
* * *
48248202 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
48248242 ATATCTGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
* * *
48248282 ATATCCGGGCTAAG-TCTCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATC-CGAAGGCATTTGTGCTAGCGACT
* *
48248322 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
48248346 CTTGTGCAAG
Statistics
Matches: 154, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
39 2 0.01
40 121 0.79
41 30 0.19
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGCGACT
Found at i:48248303 original size:80 final size:80
Alignment explanation
Indices: 48248121--48248381 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
48248111 TATTCGAATG
* * * *
48248121 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGACCCGAAGGC
*
48248186 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * * * *
48248202 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCTGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* *
48248267 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * * *
48248282 ATATCCGGGCTAAGTCTCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
* * *
48248347 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
48248361 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
48248382 ATTACTTGAG
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
78 13 0.09
79 14 0.09
80 91 0.61
81 31 0.21
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:48248335 original size:120 final size:121
Alignment explanation
Indices: 48248121--48248381 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 121
48248111 TATTCGAATG
** * *
48248121 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
* * * *
48248186 ATTCGTGCGAGTTGCTATATTCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * *
48248242 ATATCTGGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCTCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATC-CGAAGG
* * * * *
48248305 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-TAGTT
65 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
*
48248361 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAAACCCGAAG
48248382 ATTACTTGAG
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 15 0.13
119 19 0.16
120 55 0.46
121 30 0.25
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:48251764 original size:27 final size:27
Alignment explanation
Indices: 48251724--48251835 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
48251714 AGGAAGCGTC
*
48251724 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
* *
48251751 CTGGTGGCTCTGCCATATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
48251778 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
48251806 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
48251832 CTGG
1 CTGG
48251836 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.64
28 18 0.25
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:48251830 original size:54 final size:54
Alignment explanation
Indices: 48251724--48251835 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
48251714 AGGAAGCGTC
* * *
48251724 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
48251778 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
48251832 CTGG
1 CTGG
48251836 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 34 0.67
55 17 0.33
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:48258837 original size:51 final size:52
Alignment explanation
Indices: 48258777--48258885 Score: 166
Period size: 51 Copynumber: 2.1 Consensus size: 52
48258767 CGTGTATTGG
*
48258777 GGTGTTAGCATAGTGAAACTTTGGAACGTTGTGTCTGTGATGAT-AGTGTTTT
1 GGTG-TAGCATAGTGAAACTTTAGAACGTTGTGTCTGTGATGATAAGTGTTTT
* * *
48258829 GGTGTAGCATAGTGACATTTTAGAATGTTGTGTCTGTGATGATAAGTGTTTT
1 GGTGTAGCATAGTGAAACTTTAGAACGTTGTGTCTGTGATGATAAGTGTTTT
48258881 GGTGT
1 GGTGT
48258886 CGACCCATTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 35 0.67
52 17 0.33
ACGTcount: A:0.21, C:0.06, G:0.31, T:0.41
Consensus pattern (52 bp):
GGTGTAGCATAGTGAAACTTTAGAACGTTGTGTCTGTGATGATAAGTGTTTT
Found at i:48260241 original size:46 final size:46
Alignment explanation
Indices: 48260148--48260299 Score: 151
Period size: 47 Copynumber: 3.2 Consensus size: 46
48260138 ATAGTAAAAC
* * * ** * *
48260148 TATGGTCTTGCACATAATCACATATTACACACTGAAGTTATAGCCCAGC
1 TATGGTCTTACACA-GATCACATA-T-CACACTGATGCCATATCCCAGA
*
48260197 TATGGTCTTCCACAGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGATCACATATCACACTGATGCCATATCCCAGA
* ** *
48260243 TATGGTCTTATACAGAAGAACATATCACACTGATGCCATATCTCAGA
1 TATGGTCTTACACAG-ATCACATATCACACTGATGCCATATCCCAGA
*
48260290 TATAGTCTTA
1 TATGGTCTTA
48260300 TACGAAAGCA
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
46 30 0.34
47 38 0.43
48 8 0.09
49 13 0.15
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (46 bp):
TATGGTCTTACACAGATCACATATCACACTGATGCCATATCCCAGA
Found at i:48260280 original size:47 final size:47
Alignment explanation
Indices: 48260215--48260354 Score: 165
Period size: 47 Copynumber: 2.9 Consensus size: 47
48260205 TCCACAGATC
48260215 ACATATCACACTGATGCCATATCCCAGATATGGTCTTATAC-AGAAGA
1 ACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGA-AAGA
* * *
48260262 ACATATCACACTGATGCCATATCTCAGATATAGTCTTATACGAAAGC
1 ACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGAAAGA
* *
48260309 ACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATA
1 ACAT-ATCACA---CT--GATGCCATATCCCAGATATGGTCTTATA
48260355 TGGAAATCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
47 46 0.58
48 7 0.09
51 2 0.03
53 24 0.30
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.27
Consensus pattern (47 bp):
ACATATCACACTGATGCCATATCCCAGATATGGTCTTATACGAAAGA
Found at i:48260351 original size:53 final size:53
Alignment explanation
Indices: 48260219--48260413 Score: 177
Period size: 54 Copynumber: 3.8 Consensus size: 53
48260209 CAGATCACAT
* * * *
48260219 ATCACACTGATGCCATATCCCAGATATGGTCTTATAC---AG-A-AGAA-CAT
1 ATCACACCGATGCCATATCCCAGCTATGGTCTTATACGAAAGCACATAATCAC
* * * *
48260266 ATCACACTGATGCCATATCTCAGATATAGTCTTATACGAAAGCACATAATCAC
1 ATCACACCGATGCCATATCCCAGCTATGGTCTTATACGAAAGCACATAATCAC
* * * * * *
48260319 ATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATATGGAAATCACATGATCAC
1 ATCACACCGATGCCATATCCCAGCTATGGTCTTATA-CGAAAGCACATAATCAC
* * **
48260373 ATCACACTGATTCCATATCCTGGCTATGGTCTTATACGAAA
1 ATCACACCGATGCCATATCCCAGCTATGGTCTTATACGAAA
48260414 ATTACATATC
Statistics
Matches: 119, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
47 35 0.29
50 2 0.02
51 1 0.01
52 3 0.03
53 35 0.29
54 43 0.36
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (53 bp):
ATCACACCGATGCCATATCCCAGCTATGGTCTTATACGAAAGCACATAATCAC
Found at i:48265795 original size:25 final size:26
Alignment explanation
Indices: 48265748--48265805 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
48265738 CACTTTTATC
48265748 TTTA-TTTATCTTCTTTAAGTACT-T
1 TTTATTTTATCTTCTTTAAGTACTAT
*
48265772 TTTATTTTATTTTCATTTAA-TACTAT
1 TTTATTTTATCTTC-TTTAAGTACTAT
*
48265798 TTCATTTT
1 TTTATTTT
48265806 TAGGTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 12 0.41
26 13 0.45
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTATTTTATCTTCTTTAAGTACTAT
Found at i:48273568 original size:21 final size:21
Alignment explanation
Indices: 48273538--48273577 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
48273528 CTGTGCTCAG
* *
48273538 AGGTTCGACATTATTGATGCA
1 AGGTTCGACAGTATCGATGCA
*
48273559 AGGTTTGACAGTATCGATG
1 AGGTTCGACAGTATCGATG
48273578 AGACTTTACG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (21 bp):
AGGTTCGACAGTATCGATGCA
Found at i:48273688 original size:6 final size:6
Alignment explanation
Indices: 48273666--48273708 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
48273656 TTTGAGTCTA
*
48273666 TTTA-T TTTATT TCTATT TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
48273709 CCTTCATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
5 4 0.11
6 31 0.89
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:48275200 original size:17 final size:18
Alignment explanation
Indices: 48275178--48275211 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
48275168 CACATTGAAG
48275178 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
48275195 TGTTTTCATCGAAAACC
1 TGTTTTCATCGAAAACC
48275212 CTTCTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:48276511 original size:28 final size:28
Alignment explanation
Indices: 48276467--48276569 Score: 143
Period size: 28 Copynumber: 3.7 Consensus size: 28
48276457 TGGCCCCTTT
*
48276467 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
48276495 GGGCCCAATCACTTTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* * *
48276523 AGGCTCAATCACTTTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
48276551 AGGCCCACTCACATTCATA
1 AGGCCCAATCACATTCATA
48276570 GTCATGCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 66 1.00
ACGTcount: A:0.24, C:0.35, G:0.16, T:0.25
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:48276806 original size:16 final size:16
Alignment explanation
Indices: 48276785--48276832 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
48276775 GCCAAACTTC
*
48276785 TGGCTTTTCAGCATTT
1 TGGCTTTTCGGCATTT
*
48276801 TGGCTTTTCGGTATTT
1 TGGCTTTTCGGCATTT
* *
48276817 TTGCTCTTCGGCATTT
1 TGGCTTTTCGGCATTT
48276833 CGGGATTTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.08, C:0.19, G:0.21, T:0.52
Consensus pattern (16 bp):
TGGCTTTTCGGCATTT
Found at i:48281193 original size:28 final size:28
Alignment explanation
Indices: 48281157--48281259 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 28
48281147 TGTCCTCTTT
* *
48281157 AGGCCCAATCTCATTCATATGGCCCACC
1 AGGCCCAATCACTTTCATATGGCCCACC
*
48281185 -GAGCCCAATCACTTTCATATGGCCCATC
1 AG-GCCCAATCACTTTCATATGGCCCACC
* **
48281213 AGGCCCAATCACTTTCACATGGCCCGTC
1 AGGCCCAATCACTTTCATATGGCCCACC
* *
48281241 AGGCCCATTCACATTCATA
1 AGGCCCAATCACTTTCATA
48281260 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
27 1 0.02
28 63 0.97
29 1 0.02
ACGTcount: A:0.25, C:0.37, G:0.15, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACTTTCATATGGCCCACC
Found at i:48281497 original size:16 final size:16
Alignment explanation
Indices: 48281477--48281539 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
48281467 AAACTTTTGG
48281477 CTTTTCAGCATTTC-A
1 CTTTTCAGCATTTCGA
*
48281492 GCTTTTC-GACATTTTGA
1 -CTTTTCAG-CATTTCGA
* *
48281509 CTTTTTAGCATTTCGT
1 CTTTTCAGCATTTCGA
*
48281525 CTTTTCGGCATTTCG
1 CTTTTCAGCATTTCG
48281540 GGATTTGCCG
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
15 1 0.03
16 35 0.92
17 2 0.05
ACGTcount: A:0.14, C:0.22, G:0.14, T:0.49
Consensus pattern (16 bp):
CTTTTCAGCATTTCGA
Found at i:48281513 original size:32 final size:32
Alignment explanation
Indices: 48281471--48281537 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
48281461 GTAGACAAAC
*
48281471 TTTTGGCTTTTCAGCATTTCAG-CTTTTCGACA
1 TTTTGACTTTTCAGCATTTC-GTCTTTTCGACA
* *
48281503 TTTTGACTTTTTAGCATTTCGTCTTTTCGGCA
1 TTTTGACTTTTCAGCATTTCGTCTTTTCGACA
48281535 TTT
1 TTT
48281538 CGGGATTTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.13, C:0.19, G:0.15, T:0.52
Consensus pattern (32 bp):
TTTTGACTTTTCAGCATTTCGTCTTTTCGACA
Found at i:48285800 original size:41 final size:41
Alignment explanation
Indices: 48285755--48285872 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
48285745 TGAAAGATAA
48285755 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
48285796 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48285826 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
48285867 ATGTAG
1 ATGTAG
48285873 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:48285811 original size:71 final size:71
Alignment explanation
Indices: 48285723--48285886 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
48285713 GAGATGTATC
48285723 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48285788 AGGACA
66 AGGACA
48285794 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48285859 AGGACA
66 AGGACA
48285865 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48285887 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48287624 original size:8 final size:8
Alignment explanation
Indices: 48287611--48287636 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
48287601 TATGCATACG
48287611 TTTTCTTC
1 TTTTCTTC
48287619 TTTTCTTC
1 TTTTCTTC
48287627 TTTTCTTC
1 TTTTCTTC
48287635 TT
1 TT
48287637 CTCCCACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTCTTC
Found at i:48289971 original size:62 final size:61
Alignment explanation
Indices: 48289905--48290092 Score: 191
Period size: 62 Copynumber: 3.0 Consensus size: 61
48289895 AATGAGTCAT
* *
48289905 ACAGCTTGGGCACACGCCTGTGTCCTTGGTCGTGTGGTTTTATACCATTAACAGTGAGTTAC
1 ACAGCCTGGGCACACGCCTGTGTCCTTGG-CGTGTGGTTTTATACCATGAACAGTGAGTTAC
* * * *
48289967 ACAGCCTGGACACACG-CTCGTGTCCCTGGCCGTGTGGTTTTATACCATGAATAGTGAGATAC
1 ACAGCCTGGGCACACGCCT-GTGTCCTTGG-CGTGTGGTTTTATACCATGAACAGTGAGTTAC
** ** * * * *
48290029 ATGGCCTAAGCACACGCCCGTGTCCTTGGCTGTATGGATTTACT-CCATGAACAATGAGTTAC
1 ACAGCCTGGGCACACGCCTGTGTCCTTGGC-GTGTGGTTTTA-TACCATGAACAGTGAGTTAC
48290091 AC
1 AC
48290093 GGCCATTCGT
Statistics
Matches: 102, Mismatches: 20, Indels: 8
0.78 0.15 0.06
Matches are distributed among these distances:
61 3 0.03
62 97 0.95
63 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.28
Consensus pattern (61 bp):
ACAGCCTGGGCACACGCCTGTGTCCTTGGCGTGTGGTTTTATACCATGAACAGTGAGTTAC
Found at i:48295126 original size:40 final size:40
Alignment explanation
Indices: 48295059--48295138 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
48295049 ATATATTGAG
*
48295059 ATCTTGATTCAATCATTTAAATATCAAATTGAAATTACAA
1 ATCTTGATTCAATCATTTAAATATCAAATTGAAATAACAA
48295099 ATCTTGATTCAATCATTTAAATATCAAATTGAAATAACAA
1 ATCTTGATTCAATCATTTAAATATCAAATTGAAATAACAA
48295139 CTCACTTAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.36
Consensus pattern (40 bp):
ATCTTGATTCAATCATTTAAATATCAAATTGAAATAACAA
Found at i:48298224 original size:18 final size:18
Alignment explanation
Indices: 48298181--48298231 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
48298171 AAATAATAAG
48298181 TAATT-AAATTAATTAAAA
1 TAATTCAAATT-ATTAAAA
* *
48298199 TAA-GCAAATTATTTAAA
1 TAATTCAAATTATTAAAA
48298216 TAATTCAAATATATTA
1 TAATTCAAAT-TATTA
48298232 CTAATAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 9 0.35
18 13 0.50
19 4 0.15
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (18 bp):
TAATTCAAATTATTAAAA
Found at i:48299555 original size:17 final size:18
Alignment explanation
Indices: 48299525--48299559 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
48299515 ATGTGGCCTG
48299525 CCCGTGTGGGCCCACACT
1 CCCGTGTGGGCCCACACT
48299543 CCCGTGT-GGCCCACACT
1 CCCGTGTGGGCCCACACT
48299560 GCCCCAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.11, C:0.46, G:0.26, T:0.17
Consensus pattern (18 bp):
CCCGTGTGGGCCCACACT
Found at i:48303712 original size:144 final size:144
Alignment explanation
Indices: 48303527--48303858 Score: 418
Period size: 144 Copynumber: 2.3 Consensus size: 144
48303517 GACATTTGGG
* * *
48303527 TGATATGTGTGCCAGTATAAGACCACGTCTGGGACATGGCATCGACCACGA-TATGAGAGCCAGT
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC-ATTATGAGAGCCAGT
* * * * *
48303591 GTAAGACCATGT-TTGGAACATGGCATCAGCAATGTTG-TGAGAGCCAGTGTAAGACCATGTCTG
65 GTAAGACCATATCTAGG-ACATCGCATCAGCAATG-AGACGAGAGCCAGTGTAAGACCATGTCTG
*
48303654 GGACATGGCATCGTCAT
128 GGACATGGCATCGGCAT
* * * * *
48303671 TGATATGTGCGCTAGTGTAAGATCATGTCTGGGTCATGGCATCGGCCACATTATGAGAGCCAGTG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
* * *
48303736 TAAGACCATATCTAGGACATCGCATCAGTATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
66 TAAGACCATATCTAGGACATCGCATCAGCAATGAGACGAGAGCCAGTGTAAGACCATGTCTGGGA
*
48303801 TATGGCATCGGCAT
131 CATGGCATCGGCAT
* * * *
48303815 CGACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
1 TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
48303859 GTAACTCACC
Statistics
Matches: 160, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
143 2 0.01
144 155 0.97
145 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (144 bp):
TGATATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACATTATGAGAGCCAGTG
TAAGACCATATCTAGGACATCGCATCAGCAATGAGACGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCAT
Found at i:48303859 original size:48 final size:48
Alignment explanation
Indices: 48303528--48303859 Score: 321
Period size: 48 Copynumber: 6.9 Consensus size: 48
48303518 ACATTTGGGT
* * * * *
48303528 GATATGTGTGCCAGTATAAGACCACGTCTGGGACATGGCATCGACCA-C
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATC
* * *
48303576 GATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAGCAAT-
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATC
* * * *
48303624 GTTGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGTCATT
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
* * * * *
48303672 GATATGTGCGCTAGTGTAAGATCATGTCTGGGTCATGGCATCGGCCA-C
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATC
* * * * * *
48303720 -ATTATGAGAGCCAGTGTAAGACCATATCTAGGACATCGCATCAGTATT
1 GA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
* * * *
48303768 GAGACGAGAGCTAGTGTAAGACCATGTCTGGGATATGGCATCGGCATC
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
* * * *
48303816 GACATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG
1 GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
48303860 TAACTCACCC
Statistics
Matches: 226, Mismatches: 51, Indels: 14
0.78 0.18 0.05
Matches are distributed among these distances:
47 5 0.02
48 218 0.96
49 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
GATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC
Found at i:48305826 original size:21 final size:22
Alignment explanation
Indices: 48305800--48305855 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
48305790 GCACCTTCAG
*
48305800 ATGCATCCACAACAA-AGTCAA
1 ATGCATCCACAACAAGAATCAA
*
48305821 ATGCATCCAC-ACAAGAATCAG
1 ATGCATCCACAACAAGAATCAA
*
48305842 ATGCAACCACAACA
1 ATGCATCCACAACA
48305856 CTTTTCAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.13
21 23 0.77
22 3 0.10
ACGTcount: A:0.46, C:0.30, G:0.11, T:0.12
Consensus pattern (22 bp):
ATGCATCCACAACAAGAATCAA
Found at i:48311854 original size:48 final size:48
Alignment explanation
Indices: 48311798--48312087 Score: 420
Period size: 48 Copynumber: 6.0 Consensus size: 48
48311788 CACAAGATAA
*
48311798 AGATATGTATATGTGGTAAAGCCGAATGGCT-GATGAGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAG-TGTGAAATATGTATG
*
48311846 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* *
48311894 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGATATATATATATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG--A-A-ATATGTATG
*
48311946 AGATATGTATATGTGGTAGAGCCGAATGGCTAGTGTGAAATATGTATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
**
48311994 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGCCTG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
* * * * *
48312042 AGATACGTTTATGCGGTAAAGCTGAAGGGCTAGTGTGAAATATGTA
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
48312088 GGAGGTGTGG
Statistics
Matches: 221, Mismatches: 16, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
48 174 0.79
49 1 0.00
50 2 0.01
51 1 0.00
52 43 0.19
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATG
Found at i:48311973 original size:100 final size:100
Alignment explanation
Indices: 48311798--48312036 Score: 387
Period size: 100 Copynumber: 2.4 Consensus size: 100
48311788 CACAAGATAA
* * *
48311798 AGATATGTATATGTGGTAAAGCCGAATGGCTGA--TGAGA-A-ATATGTATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
48311859 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
66 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
48311894 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGATATATATATATATGAGATATGTATATG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
* *
48311959 TGGTAGAGCCGAATGGCTAGTGTGAAATATGTATG
66 TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
*
48311994 AGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
48312037 GCCTGAGATA
Statistics
Matches: 132, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
96 32 0.24
98 4 0.03
99 1 0.01
100 95 0.72
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (100 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATATGAGATATGTATATG
TGGTAAAGCCGAATGGCTAATGTGAAATATGTATG
Found at i:48312001 original size:148 final size:148
Alignment explanation
Indices: 48311798--48312084 Score: 450
Period size: 148 Copynumber: 1.9 Consensus size: 148
48311788 CACAAGATAA
48311798 AGATATGTATATGTGGTAAAGCCGAATGGCTGATGAGAAATATGTATGAGATATGTATATGTGGT
1 AGATATGTATATGTGGTAAAGCCGAATGGCTGATGAGAAATATGTATGAGATATGTATATGTGGT
* * * *
48311863 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
66 AAAGCCGAATGGCTAATGTGAAATATGCATGAGATACGTATATGCGGTAAAGCCGAAGGGCTAAT
*
48311928 GTGATATATATATATATG
131 GTGAAATATATATATATG
* *
48311946 AGATATGTATATGTGGTAGAGCCGAATGGCT-AGTGTGAAATATGTATGAGATATGTATATGTGG
1 AGATATGTATATGTGGTAAAGCCGAATGGCTGA-TGAGAAATATGTATGAGATATGTATATGTGG
* * * * *
48312010 TAAAGCCGAATGGCTAGTGTGAAATATGCCTGAGATACGTTTATGCGGTAAAGCTGAAGGGCTAG
65 TAAAGCCGAATGGCTAATGTGAAATATGCATGAGATACGTATATGCGGTAAAGCCGAAGGGCTAA
48312075 TGTGAAATAT
130 TGTGAAATAT
48312085 GTAGGAGGTG
Statistics
Matches: 126, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
147 1 0.01
148 125 0.99
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (148 bp):
AGATATGTATATGTGGTAAAGCCGAATGGCTGATGAGAAATATGTATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATGCATGAGATACGTATATGCGGTAAAGCCGAAGGGCTAAT
GTGAAATATATATATATG
Found at i:48312312 original size:74 final size:74
Alignment explanation
Indices: 48312223--48312374 Score: 277
Period size: 74 Copynumber: 2.1 Consensus size: 74
48312213 ACATGAAACT
48312223 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGAT
*
48312288 GACTACGTG
66 AACTACGTG
*
48312297 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGAT
1 TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGAT
*
48312362 AACTTCGTG
66 AACTACGTG
48312371 TGGA
1 TGGA
48312375 GATTTCATCT
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 75 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (74 bp):
TGGAAATATATTCCGGGTAAGACCCGATGACTACGTGTGGAGATTATGTCCGGGTAAGACCCGAT
AACTACGTG
Found at i:48312379 original size:37 final size:37
Alignment explanation
Indices: 48312234--48312378 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
48312224 GGAAATATAT
48312234 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
48312271 TCCGGGTAAGACCCGATGACTACGTGTGGAAATATAT-
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGAT-TATG
*
48312308 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
48312345 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
48312379 TCATCTGAGC
Statistics
Matches: 101, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
36 2 0.02
37 96 0.95
38 3 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:48315314 original size:40 final size:40
Alignment explanation
Indices: 48315092--48315305 Score: 367
Period size: 40 Copynumber: 5.4 Consensus size: 40
48315082 GATTATTCGA
* *
48315092 ATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTACTG
1 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
48315132 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48315172 ATGTATCCCGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48315212 ATGTATCCGGGCTAAGTCTCGAAGAGCATTC-TGCTAGTG
1 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48315251 ATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCTAGTG
1 ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
48315291 ATATATCCGGGCTAA
1 ATGTATCCGGGCTAA
48315306 ACCTCAAAGG
Statistics
Matches: 165, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 37 0.22
40 128 0.78
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:48315423 original size:57 final size:57
Alignment explanation
Indices: 48315333--48315443 Score: 150
Period size: 57 Copynumber: 1.9 Consensus size: 57
48315323 GCTGGAATCA
* *
48315333 TGAGGCACTGTGTGTGCAAGTTCTTCAACCGAGCACTACGTGTGCCAGATCAGTAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTACGTGTGCCAAATCAGTAGT
** * * * *
48315390 TGAGGCACTATGTGTGTGAGTTCTTTAATCGAGCACTATGTGTGCGAAATCAGT
1 TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTACGTGTGCCAAATCAGT
48315444 CAGTGGGCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 46 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCAAGTTCTTCAACCGAGCACTACGTGTGCCAAATCAGTAGT
Found at i:48316182 original size:2 final size:2
Alignment explanation
Indices: 48316177--48316204 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
48316167 AAAAAAAGAA
48316177 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
48316205 TCACAAGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48319509 original size:27 final size:28
Alignment explanation
Indices: 48319452--48319521 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
48319442 AAATTTGTAC
**
48319452 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
48319480 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
48319507 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
48319522 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:48319530 original size:27 final size:27
Alignment explanation
Indices: 48319452--48319533 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
48319442 AAATTTGTAC
* *
48319452 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
48319480 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
48319507 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
48319534 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:48322212 original size:40 final size:40
Alignment explanation
Indices: 48322157--48322374 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
48322147 TGGATGATAA
* * *
48322157 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
48322197 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
48322237 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48322277 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48322317 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
48322357 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48322375 TACTTGGCTT
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 150 0.90
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48328906 original size:6 final size:6
Alignment explanation
Indices: 48328868--48328911 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
48328858 AAATGATGAT
* * *
48328868 AAAAA- AAAAAG GAAAAG AGAAAG AAAAAG AAAAAA AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
48328912 GGCTCTCATG
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:48330234 original size:40 final size:40
Alignment explanation
Indices: 48330170--48330387 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
48330160 TGGATGATAA
* * * *
48330170 CCGGGCTAAGTCCCAAAGGTATTTGTGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
48330210 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48330250 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
48330290 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
48330330 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
48330370 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
48330388 TACTTGGCTT
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:48336507 original size:39 final size:40
Alignment explanation
Indices: 48336336--48336559 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
48336326 GCTACTCGTT
* *
48336336 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCGCA
**
48336376 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
*
48336416 CAAATACCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
*
48336456 CGAATGCCTTCGGATCTTAGTCCGGATTTAGTAACT-GCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
* * * *
48336495 CGAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAAC-TCGCA
* *
48336536 CAAA-GCCTTGGGA-CTTAGCCCGGA
1 CAAATGCCTTCGGATCTTAGTCCGGA
48336560 CATCATTCGA
Statistics
Matches: 168, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
39 49 0.29
40 111 0.66
41 8 0.05
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTAACTCGCA
Found at i:48340676 original size:93 final size:93
Alignment explanation
Indices: 48340550--48340720 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
48340540 GCCCATAAGT
*
48340550 GAACTCGGACTCAACTCAATGAGCTCAGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
48340615 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
48340643 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCGAACTCAACTCA
*
48340707 ACGAGTTCGGATGC
65 ACGAGCTCGGATGC
48340721 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCGAACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:48340717 original size:46 final size:45
Alignment explanation
Indices: 48340542--48340716 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 45
48340532 TGTAACCCGC
*
48340542 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCAT
* *
48340588 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--T
* *** *
48340634 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCAT
*
48340681 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
48340717 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 65 0.60
47 31 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCAT
Found at i:48343104 original size:15 final size:15
Alignment explanation
Indices: 48343084--48343122 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
48343074 CAAGAAAACC
48343084 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
48343099 GAATAAAGAGATCCA
1 GAATAAAGAGATCCA
*
48343114 GGATAAAGA
1 GAATAAAGA
48343123 AACCCAAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.10, G:0.23, T:0.13
Consensus pattern (15 bp):
GAATAAAGAGATCCA
Found at i:48346197 original size:93 final size:93
Alignment explanation
Indices: 48346070--48346239 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
48346060 CCCATAAGTG
** *
48346070 AACTCGGACTCAACTCAATGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
48346135 GAGCTCGGATGCCTAGTTACATCTCTCA
66 GAGCTCGGATGCCTAGTTACATCTCTCA
*
48346163 AACTCGGACTCAACTCAACAAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACAAGCTCAGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
48346227 CGAGTTCGGATGC
65 CGAGCTCGGATGC
48346240 TCAACCATCC
Statistics
Matches: 71, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACAAGCTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:48346233 original size:46 final size:46
Alignment explanation
Indices: 48346061--48346236 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
48346051 TGTAACCCGC
* *
48346061 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCAT
*
48346107 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
48346157 CTC-TCA---AACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
48346200 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
48346237 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 2 0.02
46 60 0.55
47 26 0.24
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:48346255 original size:46 final size:45
Alignment explanation
Indices: 48346112--48346255 Score: 113
Period size: 46 Copynumber: 3.1 Consensus size: 45
48346102 CGCATCCATA
*
48346112 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATC-CT
* *
48346161 CA---AACTCGGACTCAACTCAACAAGTTCGGA---CATTCGCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-AC-CATCC-T
48346204 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATCCT
48346251 AGTGA
1 AGTGA
48346256 CATGTCACTT
Statistics
Matches: 78, Mismatches: 6, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 7 0.09
44 1 0.01
46 32 0.41
47 27 0.35
48 5 0.06
49 1 0.01
50 3 0.04
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCCT
Found at i:48352176 original size:32 final size:32
Alignment explanation
Indices: 48352132--48352223 Score: 98
Period size: 32 Copynumber: 2.8 Consensus size: 32
48352122 TCAAGTCCAT
*
48352132 TGGGCCTAAGCCC-ATTCAGTTAACAATGAAAC
1 TGGGCCTAAGCCCTATTCAGATAACAAT-AAAC
* *
48352164 TGGGCC-AGAGCCCTTTTCAGATCACAATAAAC
1 TGGGCCTA-AGCCCTATTCAGATAACAATAAAC
*
48352196 TGGGCCTTAGCCCCTTATTCAGATAACA
1 TGGGCCTAAG-CCC-TATTCAGATAACA
48352224 GTACGGCCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 8
0.78 0.10 0.13
Matches are distributed among these distances:
31 1 0.02
32 23 0.47
33 14 0.29
34 11 0.22
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.24
Consensus pattern (32 bp):
TGGGCCTAAGCCCTATTCAGATAACAATAAAC
Found at i:48352191 original size:33 final size:34
Alignment explanation
Indices: 48352145--48352219 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 34
48352135 GCCTAAGCCC
* *
48352145 ATTCAGTTAACAATGAAACTGGGCCAGAG-CCCTT
1 ATTCAGATCACAAT-AAACTGGGCCAGAGCCCCTT
**
48352179 -TTCAGATCACAATAAACTGGGCCTTAGCCCCTT
1 ATTCAGATCACAATAAACTGGGCCAGAGCCCCTT
48352212 ATTCAGAT
1 ATTCAGAT
48352220 AACAGTACGG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
32 12 0.34
33 16 0.46
34 7 0.20
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (34 bp):
ATTCAGATCACAATAAACTGGGCCAGAGCCCCTT
Found at i:48352565 original size:26 final size:26
Alignment explanation
Indices: 48352536--48352588 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
48352526 TCAAACGTGC
48352536 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* *
48352562 ATTTCGGTACTTTATCTCCTAGGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
48352588 A
1 A
48352589 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 19 0.79
ACGTcount: A:0.21, C:0.17, G:0.23, T:0.40
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:48353859 original size:12 final size:12
Alignment explanation
Indices: 48353842--48353936 Score: 50
Period size: 12 Copynumber: 7.9 Consensus size: 12
48353832 GCCAACTCCT
*
48353842 GCTCCTTGATCA
1 GCTCCTTAATCA
* *
48353854 GCTCCTAAATCT
1 GCTCCTTAATCA
* *
48353866 TCTCCTTTATCA
1 GCTCCTTAATCA
* *
48353878 GCTCCTAAATCC
1 GCTCCTTAATCA
*
48353890 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
* *
48353902 GCTCCTAAATCC
1 GCTCCTTAATCA
*
48353914 TCTCCCTT-ATCA
1 GCT-CCTTAATCA
*
48353926 GCTCCTAAATC
1 GCTCCTTAATC
48353937 TTCTCCTGAC
Statistics
Matches: 57, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.11
12 45 0.79
13 6 0.11
ACGTcount: A:0.21, C:0.38, G:0.06, T:0.35
Consensus pattern (12 bp):
GCTCCTTAATCA
Found at i:48353877 original size:24 final size:24
Alignment explanation
Indices: 48353838--48353943 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 24
48353828 GCCGGCCAAC
*
48353838 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
48353863 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
48353887 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
48353911 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
48353935 TCTTCTCCT
1 TCCTCTCCT
48353944 GACAGCCTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
24 72 0.96
25 3 0.04
ACGTcount: A:0.19, C:0.39, G:0.06, T:0.37
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:48356949 original size:29 final size:28
Alignment explanation
Indices: 48356879--48356953 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
48356869 ATACTCGATT
* *
48356879 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
48356907 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
48356936 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
48356954 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:48356970 original size:29 final size:29
Alignment explanation
Indices: 48356937--48357010 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48356927 CCTTCGAGCT
48356937 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48356966 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48356995 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48357011 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48364822 original size:29 final size:28
Alignment explanation
Indices: 48364752--48364826 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
48364742 ATACTCGATT
* *
48364752 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
48364780 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
48364809 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
48364827 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:48364843 original size:29 final size:29
Alignment explanation
Indices: 48364810--48364883 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
48364800 CCTTCGAGCT
48364810 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
48364839 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
48364868 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
48364884 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:48371392 original size:28 final size:27
Alignment explanation
Indices: 48371329--48371398 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
48371319 ATAGTGAGTC
48371329 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
48371356 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
48371384 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48371399 GTACAAATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:48379261 original size:28 final size:27
Alignment explanation
Indices: 48379195--48379264 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
48379185 ATAGTGAGTC
*
48379195 CGCACACTTAGTGTTATATAATCAACA
1 CGCACACTTAGTGCTATATAATCAACA
*
48379222 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACA
48379250 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
48379265 GTACAAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACA
Found at i:48381079 original size:6 final size:6
Alignment explanation
Indices: 48381022--48381066 Score: 83
Period size: 6 Copynumber: 7.7 Consensus size: 6
48381012 CTATATTTTC
48381022 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA -TTTAA TTTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTT
48381067 TAGTTTTAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.13
6 33 0.87
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTAA
Found at i:48391000 original size:23 final size:23
Alignment explanation
Indices: 48390969--48391014 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
48390959 ATAAAATAGG
* *
48390969 CAATTCCATCAAAATTAACAACT
1 CAATACCATCAAAACTAACAACT
*
48390992 CAATACCATCAACACTAACAACT
1 CAATACCATCAAAACTAACAACT
48391015 ATATATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (23 bp):
CAATACCATCAAAACTAACAACT
Found at i:48395947 original size:46 final size:46
Alignment explanation
Indices: 48395897--48396068 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
48395887 TGGTTGAGCA
48395897 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
48395943 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T-G
* *
48395987 GCATCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TC--CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
48396035 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48396069 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 87 0.82
47 2 0.02
48 2 0.02
49 3 0.03
50 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:48396056 original size:92 final size:93
Alignment explanation
Indices: 48395894--48396063 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
48395884 GGATGGTTGA
* *
48395894 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48395959 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
48395987 GCAT-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
48396051 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
48396064 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 70 0.95
93 4 0.05
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:48410761 original size:8 final size:8
Alignment explanation
Indices: 48410748--48410782 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
48410738 AATGCCGATG
48410748 TTTCAGCT
1 TTTCAGCT
48410756 TTTCAGCT
1 TTTCAGCT
*
48410764 TTTCGGCT
1 TTTCAGCT
*
48410772 TTTCGGCT
1 TTTCAGCT
48410780 TTT
1 TTT
48410783 GCCGATTCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.06, C:0.23, G:0.17, T:0.54
Consensus pattern (8 bp):
TTTCAGCT
Found at i:48415249 original size:27 final size:27
Alignment explanation
Indices: 48415219--48415295 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 27
48415209 ATCATCATTC
48415219 TACCATACAGGGGTATTACGGTAATTT
1 TACCATACAGGGGTATTACGGTAATTT
* ** *
48415246 TACCCTACAGGGGTATTATAGTCATTT
1 TACCATACAGGGGTATTACGGTAATTT
* * * *
48415273 TACAAGACGGGGGTATTTCGGTA
1 TACCATACAGGGGTATTACGGTA
48415296 CTTATTATGA
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (27 bp):
TACCATACAGGGGTATTACGGTAATTT
Found at i:48425924 original size:21 final size:21
Alignment explanation
Indices: 48425900--48425940 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
48425890 TAAGGCACAC
48425900 GCCTATGTGGAAGGGCAACAG
1 GCCTATGTGGAAGGGCAACAG
* * *
48425921 GCCTGTGTTGAAGGGTAACA
1 GCCTATGTGGAAGGGCAACA
48425941 CGCCCGTGCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.17, G:0.37, T:0.20
Consensus pattern (21 bp):
GCCTATGTGGAAGGGCAACAG
Found at i:48431600 original size:40 final size:40
Alignment explanation
Indices: 48431503--48431678 Score: 176
Period size: 40 Copynumber: 4.4 Consensus size: 40
48431493 TCGAATGGTG
* * *
48431503 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
48431544 TCCGGG-TCAACTCCCGAAGGCATTTGTGCGAGTTACCAAA
1 TCCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
48431584 ACCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * * *
48431624 TCCGGGCTAATTCCCAAAGGCAATTGTGCGAATCACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
48431665 -CCGGGCTATGTCCC
1 TCCGGGCTAAGTCCC
48431679 AAAGACAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
40 83 0.75
41 28 0.25
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:48431651 original size:80 final size:81
Alignment explanation
Indices: 48431504--48431678 Score: 201
Period size: 80 Copynumber: 2.2 Consensus size: 81
48431494 CGAATGGTGT
* * * *
48431504 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAAATCCGGGTCAACTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCAATT
48431569 GTGCGAGTTACCAAAA
66 GTGCGAGTTACCAAAA
* * * * *
48431585 CCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGG-CTAATTCCCAAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTC-AACTCCCAAAGGCAAT
* * * *
48431648 TGTGCGAATCACTATAA
65 TGTGCGAGTTACCAAAA
*
48431665 CCGGGCTATGTCCC
1 CCGGGCTAAGTCCC
48431679 AAAGACAATC
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.01
80 52 0.67
81 25 0.32
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGACTAAATCCGGGTCAACTCCCAAAGGCAATT
GTGCGAGTTACCAAAA
Found at i:48431679 original size:40 final size:39
Alignment explanation
Indices: 48431555--48431696 Score: 117
Period size: 40 Copynumber: 3.6 Consensus size: 39
48431545 CCGGGTCAAC
* * * * *
48431555 TCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAG
1 TCCCAAAGGCAATTGTGCGAGTTA-CTAAACCGGGCTATG
* *
48431595 TCCCGAAGGC-ATTCGTGCGAGTTATTAAATCCGGGCTAAT-
1 TCCCAAAGGCAATT-GTGCGAGTTACTAAA-CCGGGCT-ATG
* *
48431635 TCCCAAAGGCAATTGTGCGAATCACTATAACCGGGCTATG
1 TCCCAAAGGCAATTGTGCGAGTTACTA-AACCGGGCTATG
* * *
48431675 TCCCAAAGACAATCGAGCGAGT
1 TCCCAAAGGCAATTGTGCGAGT
48431697 CGCTATATCC
Statistics
Matches: 83, Mismatches: 13, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
39 7 0.08
40 70 0.84
41 6 0.07
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23
Consensus pattern (39 bp):
TCCCAAAGGCAATTGTGCGAGTTACTAAACCGGGCTATG
Found at i:48431695 original size:80 final size:80
Alignment explanation
Indices: 48431540--48431696 Score: 181
Period size: 80 Copynumber: 2.0 Consensus size: 80
48431530 GCTAAGTGAC
* * * * * * *
48431540 TAAATCCGGGTCAACTCCCGAAGGCATTTGTGCGAGTTACCAAAACCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTCAACTCCCAAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCAAAGAC
* *
48431605 ATTCGTGCGAGTTAT
66 AATCGAGCGAGTTAT
* * * *
48431620 TAAATCCGGG-CTAATTCCCAAAGGCAATTGTGCGAATCACTATAACCGGGCTATGTCCCAAAGA
1 TAAATCCGGGTC-AACTCCCAAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCAAAGA
48431684 CAATCGAGCGAGT
65 CAATCGAGCGAGT
48431697 CGCTATATCC
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
79 1 0.02
80 62 0.98
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (80 bp):
TAAATCCGGGTCAACTCCCAAAGGCAATTGTGCGAATCACCAAAACCGGGCTAAGTCCCAAAGAC
AATCGAGCGAGTTAT
Found at i:48431703 original size:40 final size:40
Alignment explanation
Indices: 48431625--48431708 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
48431615 GTTATTAAAT
* * *
48431625 CCGGGCTAATTCCCAAAGGCAATTGTGCGAATCACTATAA
1 CCGGGCTAATTCCCAAAGACAATCGAGCGAATCACTATAA
* * *
48431665 CCGGGCT-ATGTCCCAAAGACAATCGAGCGAGTCGCTATAT
1 CCGGGCTAAT-TCCCAAAGACAATCGAGCGAATCACTATAA
48431705 CCGG
1 CCGG
48431709 TTAAATTCCA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 35 0.95
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.20
Consensus pattern (40 bp):
CCGGGCTAATTCCCAAAGACAATCGAGCGAATCACTATAA
Found at i:48436872 original size:43 final size:43
Alignment explanation
Indices: 48436716--48436871 Score: 206
Period size: 43 Copynumber: 3.6 Consensus size: 43
48436706 TATCGAAATG
*
48436716 TGATATTCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
48436760 TGATATTGGGCTTCGGGCCTAGTAGGCTATAATGCCGGTGAGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA-AA
* * * *
48436804 -AATATCGAGCGTCGGGCCTAGCAGGTTATAATGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
**
48436846 TGATATCGGGCTTCAAGCCTAGCAGG
1 TGATATCGGGCTTCGGGCCTAGCAGG
48436872 TGAAATGCCA
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
42 2 0.02
43 87 0.91
44 7 0.07
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:48440144 original size:26 final size:26
Alignment explanation
Indices: 48440115--48440164 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
48440105 TGGGGCATTC
48440115 TATGTGTAC-ATTT-ATCTTCAGAAGTA
1 TATGTG-ACGATTTAAT-TTCAGAAGTA
48440141 TATGTGACGATTTAATTTCAGAAG
1 TATGTGACGATTTAATTTCAGAAG
48440165 GAATTTTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 18 0.82
27 2 0.09
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (26 bp):
TATGTGACGATTTAATTTCAGAAGTA
Found at i:48443459 original size:43 final size:43
Alignment explanation
Indices: 48443397--48443567 Score: 220
Period size: 43 Copynumber: 4.0 Consensus size: 43
48443387 TATCGAAATG
*
48443397 TGATATTCGGGCTTTGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATA-TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
48443441 TGATATTGGGCTTCGGGCCTAGTAGGCTATAATGCCGGTGAGA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* * * *
48443484 TAATATCGAGCGTCGGGCCTAGCAGGTTATAATGCCGGTGAAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
**
48443527 TGATATCGGGCTTCAAGCCTAGCAGG-TGA-AATGCCGGTGAA
1 TGATATCGGGCTTCGGGCCTAGCAGGCT-ATAATGCCGGTGAA
48443568 TTAGTTCAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
42 13 0.12
43 92 0.84
44 5 0.05
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.25
Consensus pattern (43 bp):
TGATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:48447502 original size:21 final size:21
Alignment explanation
Indices: 48447476--48447526 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
48447466 CCTTTAAAAC
48447476 CGCCCATGTGGAAGGGTAACA
1 CGCCCATGTGGAAGGGTAACA
*
48447497 CGCCCATGTTGAAGGGTAACA
1 CGCCCATGTGGAAGGGTAACA
48447518 CGCCCATGT
1 CGCCCATGT
48447527 CCCATGCCCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.27, G:0.29, T:0.18
Consensus pattern (21 bp):
CGCCCATGTGGAAGGGTAACA
Found at i:48448799 original size:46 final size:44
Alignment explanation
Indices: 48448706--48448824 Score: 148
Period size: 46 Copynumber: 2.6 Consensus size: 44
48448696 GTGCCGATGC
* * *
48448706 CATGTCCCAAACATTGTCTTACACTGACACATCTCGTAGCCAATG
1 CATGTCCCAAACA-TGTCTTACACTGGCACATCTCGAAGACAATG
** *
48448751 CATGTCCCAAACACATCTTACACTGGCTAACTTCTCGAAGACAATG
1 CATGTCCCAAACATGTCTTACACTGGC--ACATCTCGAAGACAATG
*
48448797 CATGTCCCAAACATGTCTTACGCTGGCA
1 CATGTCCCAAACATGTCTTACACTGGCA
48448825 TTCATCTCAA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
44 12 0.19
45 13 0.21
46 38 0.60
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.25
Consensus pattern (44 bp):
CATGTCCCAAACATGTCTTACACTGGCACATCTCGAAGACAATG
Found at i:48451450 original size:9 final size:9
Alignment explanation
Indices: 48451436--48451460 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
48451426 TATTATATTA
48451436 TATATTAAC
1 TATATTAAC
48451445 TATATTAAC
1 TATATTAAC
48451454 TATATTA
1 TATATTA
48451461 TATTTATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (9 bp):
TATATTAAC
Found at i:48455188 original size:17 final size:17
Alignment explanation
Indices: 48455166--48455198 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
48455156 GTACTATTTG
48455166 ACTAAA-AAACACTTGTA
1 ACTAAAGAAAC-CTTGTA
48455183 ACTAAAGAAACCTTGT
1 ACTAAAGAAACCTTGT
48455199 GTGATGGGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.24
Consensus pattern (17 bp):
ACTAAAGAAACCTTGTA
Found at i:48459581 original size:40 final size:39
Alignment explanation
Indices: 48459532--48459739 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 39
48459522 TCTTCGGAAT
* *
48459532 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCACAA-TGCCTTCGGGTC
* * *** * *
48459571 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGAGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
48459611 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
*
48459651 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTAGCAC-AATGCCTTCGGGTC
* * *
48459691 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTTGGGAC
1 TTAGCCCGGATATAA-CAACTAGCA-CAATGCCTTCGGGTC
48459731 TTAGCCCGG
1 TTAGCCCGG
48459740 GTATCATTCA
Statistics
Matches: 144, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.02
40 138 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACAACTAGCACAATGCCTTCGGGTC
Found at i:48462574 original size:48 final size:48
Alignment explanation
Indices: 48462453--48462778 Score: 225
Period size: 48 Copynumber: 6.8 Consensus size: 48
48462443 ACAAAAGGGT
* *** * *
48462453 ATAATGCCGATGCCATGTCCTGGACATGGTCTTATACTGGCTC-TCATA
1 ATAATGCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCAT-ATA
* * * *
48462501 CATCGATACCGATGCCATGTCCCAAACATGGTCTTACACTGACACATATA
1 -AT-AATGCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATA
* * * * *
48462551 AAAATGCTGATGCCATGTTCCAAACATGGTCTTACATTGGCTCACATA
1 ATAATGCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATA
* * * * **
48462599 TTGAGGCTGATGCCATGTCCCAAACATAGTCTTACACT-AGCTTTTATA
1 ATAATGCTGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCATATA
* * *
48462647 ATAATG-TCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCAAATA
1 ATAATGCT-GATGCCATGTCCCAAACATGGTCTTACACTGACTCATATA
* * * *
48462695 TTGA-GGTCAATGCCATGTCCCAGAA-ATGGTCTTACACT-AGCTC-TCATA
1 ATAATGCT-GATGCCATGTCCCA-AACATGGTCTTACACTGA-CTCAT-ATA
* * * **
48462743 ACAATGCCGATGTCATGTTGCAAACATGGTCTTACA
1 ATAATGCTGATGCCATGTCCCAAACATGGTCTTACA
48462779 TTGGCTCACA
Statistics
Matches: 214, Mismatches: 52, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
47 4 0.02
48 167 0.78
49 6 0.03
50 36 0.17
51 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (48 bp):
ATAATGCTGATGCCATGTCCCAAACATGGTCTTACACTGACTCATATA
Found at i:48462647 original size:96 final size:96
Alignment explanation
Indices: 48462510--48462789 Score: 379
Period size: 96 Copynumber: 2.9 Consensus size: 96
48462500 ACATCGATAC
* *
48462510 CGATGCCATGTCCCAAACATGGTCTTACACT-GACACATATAAAAATGCTGATGCCATGTTCCAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTCTTATAAAAATGCTGATGCCATGTTCCAA
48462574 ACATGGTCTTACATTGGCTCACATATTGAGG-
65 ACATGGTCTTACATTGGCTCACATATTGAGGT
* * *
48462605 CTGATGCCATGTCCCAAACATAGTCTTACACTAGCTTTTATAATAATG-TCGATGCCATGTTCCA
1 C-GATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAAAAATGCT-GATGCCATGTTCCA
* *
48462669 AACATGGTCTTACACTGGCTCAAATATTGAGGT
64 AACATGGTCTTACATTGGCTCACATATTGAGGT
* * * * * *
48462702 CAATGCCATGTCCCAGAA-ATGGTCTTACACTAGCTCTCATAACAATGCCGATGTCATGTTGCAA
1 CGATGCCATGTCCCA-AACATGGTCTTACACTAGCTCTTATAAAAATGCTGATGCCATGTTCCAA
48462766 ACATGGTCTTACATTGGCTCACAT
65 ACATGGTCTTACATTGGCTCACAT
48462790 GTACCCTAAC
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
95 2 0.01
96 156 0.96
97 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTTATAAAAATGCTGATGCCATGTTCCAAA
CATGGTCTTACATTGGCTCACATATTGAGGT
Found at i:48474488 original size:27 final size:28
Alignment explanation
Indices: 48474429--48474494 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
48474419 CCATCACAGA
* * * * *
48474429 AACAGTATCAGGTGGGGCTTAGCCTAAT
1 AACAGAATCAAGTGGGCCTAAGCCCAAT
48474457 AACAGAATCAAGTGGGCCTAAGCCCAAT
1 AACAGAATCAAGTGGGCCTAAGCCCAAT
48474485 -ACAGAATCAA
1 AACAGAATCAA
48474495 TATCAGATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
27 10 0.30
28 23 0.70
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (28 bp):
AACAGAATCAAGTGGGCCTAAGCCCAAT
Found at i:48477356 original size:27 final size:27
Alignment explanation
Indices: 48477312--48477370 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
48477302 CAGAAACATT
*
48477312 ATCAGGTGAGGCTTAGCCCAATA-AAGA
1 ATCAGGTGAGGCTAAGCCCAATACAA-A
48477339 ATCAGGTG-GGCCTAAGCCCAATACAAA
1 ATCAGGTGAGG-CTAAGCCCAATACAAA
48477366 ATCAG
1 ATCAG
48477371 TATCAGATGT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
ATCAGGTGAGGCTAAGCCCAATACAAA
Found at i:48487092 original size:48 final size:47
Alignment explanation
Indices: 48487040--48487213 Score: 179
Period size: 48 Copynumber: 3.6 Consensus size: 47
48487030 CATTGAGTTT
* * *
48487040 GATGCCATGTGCTAGACATGGTGTTACACTAGCTATCATAACAATGTC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTATCATAACAATGCC
* * * ** *
48487088 GATGCCATGCTTCAAACATGGTCTTACACTGGCTCA-CATATTAAGGCC
1 GATGCCATG-TCCAGACATGGTCTTACACTAGCT-ATCATAACAATGCC
* *
48487136 GATGCCATGTCCCAGACATGGTCTAACACTAGCTCTCATAACAATGCC
1 GATGCCATGT-CCAGACATGGTCTTACACTAGCTATCATAACAATGCC
* *
48487184 GATGCCATGTTCCAAACATGATCTTACACT
1 GATGCCATG-TCCAGACATGGTCTTACACT
48487214 GGCTCACATG
Statistics
Matches: 101, Mismatches: 20, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
47 1 0.01
48 97 0.96
49 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCAGACATGGTCTTACACTAGCTATCATAACAATGCC
Found at i:48487155 original size:96 final size:96
Alignment explanation
Indices: 48487040--48487222 Score: 287
Period size: 96 Copynumber: 1.9 Consensus size: 96
48487030 CATTGAGTTT
* * * * *
48487040 GATGCCATGTGCTAGACATGGTGTTACACTAGCTATCATAACAATGTCGATGCCATGCTT-CAAA
1 GATGCCATGTCCCAGACATGGTCTAACACTAGCTATCATAACAATGCCGATGCCATG-TTCCAAA
*
48487104 CATGGTCTTACACTGGCTCACATATTAAGGCC
65 CATGATCTTACACTGGCTCACATATTAAGGCC
*
48487136 GATGCCATGTCCCAGACATGGTCTAACACTAGCTCTCATAACAATGCCGATGCCATGTTCCAAAC
1 GATGCCATGTCCCAGACATGGTCTAACACTAGCTATCATAACAATGCCGATGCCATGTTCCAAAC
48487201 ATGATCTTACACTGGCTCACAT
66 ATGATCTTACACTGGCTCACAT
48487223 GTACCCTAAT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
95 2 0.03
96 77 0.97
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (96 bp):
GATGCCATGTCCCAGACATGGTCTAACACTAGCTATCATAACAATGCCGATGCCATGTTCCAAAC
ATGATCTTACACTGGCTCACATATTAAGGCC
Done.