Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 165 of 328
Found at i:48489228 original size:21 final size:20
Alignment explanation
Indices: 48489162--48489221 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 20
48489152 GACACGACCA
*
48489162 TGTGGCTGAAAGACATGCCCG
1 TGTGGCTGAGAGACATG-CCG
*
48489183 TGTAGCTGAG-GCACATGACCG
1 TGTGGCTGAGAG-ACATG-CCG
48489204 TGTGGCTGAGAGACATGC
1 TGTGGCTGAGAGACATGC
48489222 TTGTGTGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
20 2 0.06
21 30 0.91
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.35, T:0.20
Consensus pattern (20 bp):
TGTGGCTGAGAGACATGCCG
Found at i:48496091 original size:17 final size:16
Alignment explanation
Indices: 48496069--48496102 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
48496059 AGGGATCGCA
48496069 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
48496086 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
48496102 T
1 T
48496103 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:48517583 original size:40 final size:40
Alignment explanation
Indices: 48517521--48517738 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
48517511 AAGCCAAGTA
* * * *
48517521 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
48517560 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48517600 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48517640 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48517680 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
48517720 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48517739 TTATCATCCA
Statistics
Matches: 166, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
39 13 0.08
40 153 0.92
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48519517 original size:93 final size:93
Alignment explanation
Indices: 48519405--48519576 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
48519395 CGCCCATAAG
* *
48519405 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
48519470 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
48519498 TGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
48519563 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
48519577 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGACGCTCACATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:48519592 original size:46 final size:46
Alignment explanation
Indices: 48519398--48519579 Score: 235
Period size: 46 Copynumber: 3.9 Consensus size: 46
48519388 TGTAACCCGC
* * *
48519398 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCACAT
* *
48519444 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-C---TCACAT
* *
48519494 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCACAT
*
48519537 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCA
48519580 ACCATCCTAG
Statistics
Matches: 117, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.03
44 1 0.01
45 2 0.02
46 71 0.61
47 31 0.26
48 2 0.02
49 1 0.01
50 5 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCACAT
Found at i:48528533 original size:40 final size:40
Alignment explanation
Indices: 48528474--48528691 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
48528464 AAGCCAAGTA
* * * *
48528474 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
48528513 CCTTCGAGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48528553 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48528593 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48528633 CCTTCGAGACTTAGCCCGGA-ACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
48528673 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48528692 TTATCATCCA
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 12 0.08
40 147 0.92
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48536571 original size:18 final size:18
Alignment explanation
Indices: 48536548--48536582 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
48536538 ATCACATCGG
48536548 CCATTAGGCCTTATCACC
1 CCATTAGGCCTTATCACC
48536566 CCATTAGGCCTTATCAC
1 CCATTAGGCCTTATCAC
48536583 ATATATACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.37, G:0.11, T:0.29
Consensus pattern (18 bp):
CCATTAGGCCTTATCACC
Found at i:48536576 original size:67 final size:67
Alignment explanation
Indices: 48536499--48536631 Score: 257
Period size: 67 Copynumber: 2.0 Consensus size: 67
48536489 TTCACATCGG
48536499 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
48536564 CC
66 CC
*
48536566 CCATTAGGCCTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCA
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
48536631 C
66 C
48536632 ATATATACAC
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (67 bp):
CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CC
Found at i:48536584 original size:49 final size:49
Alignment explanation
Indices: 48536314--48536564 Score: 443
Period size: 49 Copynumber: 5.2 Consensus size: 49
48536304 CCCTTCGGGA
*
48536314 CTTATCACAT-T-TATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
48536361 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
*
48536410 CTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
48536459 CTTATCACATGTATACACACTTTCACATTCTTCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
48536508 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
48536557 CTTATCAC
1 CTTATCAC
48536565 CCCATTAGGC
Statistics
Matches: 197, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
47 10 0.05
48 1 0.01
49 186 0.94
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:48536594 original size:116 final size:116
Alignment explanation
Indices: 48536450--48536680 Score: 453
Period size: 116 Copynumber: 2.0 Consensus size: 116
48536440 TTCACATCGG
*
48536450 CCATTAGGCCTTATCACATGTATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCA
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCA
48536515 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACC
66 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACC
48536566 CCATTAGGCCTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCA
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCA
48536631 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
66 CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
48536681 ATATATATAT
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 114 1.00
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.31
Consensus pattern (116 bp):
CCATTAGGCCTTATCACATATATACACACTTTCACATTCTTCACATCGGCCATTAGGCCTTATCA
CATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACC
Found at i:48536622 original size:49 final size:49
Alignment explanation
Indices: 48536566--48536687 Score: 235
Period size: 49 Copynumber: 2.5 Consensus size: 49
48536556 CCTTATCACC
*
48536566 CCATTAGGCCTTATCACATATATACACACTTTCACATTCTTCACATCGG
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
48536615 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
48536664 CCATTAGGCCTTATCACATATATA
1 CCATTAGGCCTTATCACATATATA
48536688 TATCTCATAC
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 72 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
Found at i:48542510 original size:48 final size:48
Alignment explanation
Indices: 48542458--48542637 Score: 211
Period size: 48 Copynumber: 3.8 Consensus size: 48
48542448 TATGTGTGCC
*
48542458 AGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGACAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGACAGCT
* * * * * * * * *
48542506 AGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAACC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGACAGCT
* * *
48542554 AGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGATATGTGC-GCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATG-ACAGCT
48542602 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC
48542638 ATTGTAACGC
Statistics
Matches: 108, Mismatches: 21, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
47 1 0.01
48 106 0.98
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGACAGCT
Found at i:48542626 original size:96 final size:96
Alignment explanation
Indices: 48542456--48542634 Score: 272
Period size: 96 Copynumber: 1.9 Consensus size: 96
48542446 TATATGTGTG
48542456 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGACAGCTAGTGTAAGACCATGT
1 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGACAGCTAGTGTAAGACCATGT
*
48542521 TTGGAACATGGCATCGGCGATGTTGTGAGAA
66 CTGGAACATGGCATCGGCGATGTTGTGAGAA
* * * *
48542552 CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-TATTGATATGTGC-GCTAGTGTAAGACCAT
1 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCA-CGATATG-ACAGCTAGTGTAAGACCAT
*
48542615 GTCTGGGACATGGCATCGGC
64 GTCTGGAACATGGCATCGGC
48542635 CACATTGTAA
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
95 1 0.01
96 73 0.97
97 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (96 bp):
CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCCACGATATGACAGCTAGTGTAAGACCATGT
CTGGAACATGGCATCGGCGATGTTGTGAGAA
Found at i:48544543 original size:28 final size:27
Alignment explanation
Indices: 48544478--48544562 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
48544468 AGGAAGCGTC
* *
48544478 CTGGTGGCTATGCCACAATTATCT-AAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
48544505 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
48544533 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
48544559 CTGG
1 CTGG
48544563 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.10
27 31 0.60
28 16 0.31
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:48551832 original size:40 final size:40
Alignment explanation
Indices: 48551787--48551954 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
48551777 CGGAATATAA
48551787 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48551827 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
48551867 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
48551907 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
48551947 CCGGATAT
1 CCGGATAT
48551955 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:48551937 original size:80 final size:80
Alignment explanation
Indices: 48551803--48551952 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
48551793 ATAATCACGT
*
48551803 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
48551867 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
48551883 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
48551946 CCCGGAT
64 CCCGGAT
48551953 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:48559997 original size:40 final size:40
Alignment explanation
Indices: 48559953--48560162 Score: 248
Period size: 40 Copynumber: 5.2 Consensus size: 40
48559943 CTATGTCCCA
* *
48559953 AAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCG
1 AAGGCATTTGTGC-AAGTTACTAAATCCGGACTAAGATCCG
*
48559993 AAGGCATTCGTGCAAGTTACTAAATCCGGACTAAGATCCG
1 AAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCG
* *
48560033 AAGGCATTCGTGCGAGTTACTAAATCCGGACTAAGATCCG
1 AAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCG
* * **
48560073 AAGGTATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCG
1 AAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGAT-CCG
* * *
48560113 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCG
1 AAGGCATTTGTGCAAGTTACTA-AATCCGGACTAAGAT-CCG
48560153 AAGGCATTTG
1 AAGGCATTTG
48560163 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
39 1 0.01
40 147 0.94
41 8 0.05
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCAAGTTACTAAATCCGGACTAAGATCCG
Found at i:48560180 original size:80 final size:79
Alignment explanation
Indices: 48559971--48560185 Score: 231
Period size: 80 Copynumber: 2.7 Consensus size: 79
48559961 GTGCTAAGTG
* * ** * *
48559971 ACTATATCCGGACTAAGATCCGAAGGCATTCGTGCAAGTTACTAAATCCGGACTAAGAT-CCGAA
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGG-TTAAG-TCCCGAA
48560035 GGCATTCGTGCGAGTT
64 GGCATTCGTGCGAGTT
* **
48560051 ACTAAATCCGGACTAAGATCCGAAGGTATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAG
1 ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCC-GGTTAAGTCCCGAAG
*
48560116 GCATTTGTGCGAGTT
65 GCATTCGTGCGAGTT
* * *
48560131 ACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA
1 ACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGTTAA
48560186 ACTCCGAAGG
Statistics
Matches: 118, Mismatches: 12, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
79 10 0.08
80 104 0.88
81 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (79 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAATCCGGTTAAGTCCCGAAGG
CATTCGTGCGAGTT
Found at i:48566154 original size:40 final size:40
Alignment explanation
Indices: 48566092--48566309 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
48566082 AAGCCAAGTA
* * * *
48566092 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
48566131 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
48566171 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48566211 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48566251 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
48566291 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48566310 TTATCATCCA
Statistics
Matches: 163, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 150 0.92
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48567582 original size:6 final size:6
Alignment explanation
Indices: 48567564--48567601 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
48567554 CATGAGAGCC
* *
48567564 TTTCTT TTT-TT TTTCTT TTTCTT TCTCTT TTCCTT TTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTT
48567602 TTATCATCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:48574187 original size:40 final size:40
Alignment explanation
Indices: 48574125--48574342 Score: 262
Period size: 40 Copynumber: 5.5 Consensus size: 40
48574115 AAGCCAAGTA
* * * *
48574125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
48574164 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
48574204 CCTTCGGGACTTAGCCCAGATATAGTAACTCGTAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
48574244 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
48574284 CCTTCGGGACTTAGCTCGGA-ACTAATCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
48574324 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
48574343 TTATCATCCA
Statistics
Matches: 156, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
39 13 0.08
40 143 0.92
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:48580583 original size:13 final size:13
Alignment explanation
Indices: 48580565--48580591 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
48580555 AGCACATGAG
48580565 TTGTTAGTACCTA
1 TTGTTAGTACCTA
48580578 TTGTTAGTACCTA
1 TTGTTAGTACCTA
48580591 T
1 T
48580592 GATGCCTACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48
Consensus pattern (13 bp):
TTGTTAGTACCTA
Found at i:48586279 original size:40 final size:39
Alignment explanation
Indices: 48586224--48586427 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 39
48586214 TGAATGATAC
* * *
48586224 CCGGGCTAAGCCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
48586264 CCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
48586304 CCGGGTTAAGACCCGAAGGCATTTGTG-TGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCT-AG-TGTTATAT
* * * *
48586344 CCGGGTTAAGACCCGAACGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* *
48586384 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
48586424 CCGG
1 CCGG
48586428 CTAAATTCCG
Statistics
Matches: 147, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.01
40 143 0.97
41 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:48593205 original size:48 final size:48
Alignment explanation
Indices: 48593128--48593402 Score: 246
Period size: 48 Copynumber: 5.7 Consensus size: 48
48593118 AGGCTGAGTT
* * * * * * *
48593128 GCCGATGCCATGTTCCAAACATAGACTTACACTGGCTCACATGTTAAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTATG
* * * ** * *
48593176 GCCGATACCATGTCCCAGACATGGTCTTACTCTAGCTCTTGTCTCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT-TATG
* * * * * *
48593224 GTCGATGCCATGTCCCAGACATGGTCTTATATTGACTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTATG
* ** *
48593272 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTATG
* * * **
48593320 GCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTATG
* * *
48593368 ACCGATGCCATGTCCAAGACGTGGTCTTACACTGG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG
48593403 TACACATATC
Statistics
Matches: 178, Mismatches: 47, Indels: 4
0.78 0.21 0.02
Matches are distributed among these distances:
47 1 0.01
48 176 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATTATG
Found at i:48593401 original size:96 final size:93
Alignment explanation
Indices: 48593127--48593402 Score: 286
Period size: 96 Copynumber: 2.9 Consensus size: 93
48593117 GAGGCTGAGT
* * * * * *
48593127 TGCCGATGCCATGTTCCAAACATAGACTTACACTGGCTCACATGT-TAAGGCCGATACCATGTCC
1 TGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATGT--GGCCGATGCCATGTCC
* * *
48593191 CAGACATGGTCTTACTCTAGCTCTTGTCTCAA
64 CAGACATGGTCTTACACTGGCTC-T-TCACAA
* * * * * * *
48593223 TGTCGATGCCATGTCCCAGACATGGTCTTATATTGACTCTCATAATGTGGCCGATGCCATGTCCC
1 TGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAT-ATGTGGCCGATGCCATGTCCC
48593288 AGACATGGTCTTACACTGGCTC-TCACAACA
65 AGACATGGTCTTACACTGGCTCTTCAC-A-A
*
48593318 TCGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGACCGATGCCATGTCC
1 T-GCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-GTGGCCGATGCCATGTCC
* *
48593383 AAGACGTGGTCTTACACTGG
64 CAGACATGGTCTTACACTGG
48593403 TACACATATC
Statistics
Matches: 150, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
93 3 0.02
94 1 0.01
95 4 0.03
96 140 0.93
97 1 0.01
98 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (93 bp):
TGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATGTGGCCGATGCCATGTCCCA
GACATGGTCTTACACTGGCTCTTCACAA
Found at i:48593902 original size:48 final size:48
Alignment explanation
Indices: 48593831--48594010 Score: 207
Period size: 48 Copynumber: 3.8 Consensus size: 48
48593821 CACATGTTAA
* * * * *
48593831 GGCCGATACCATGTCCCAGACATGGTCTTATACTGACCCTCATAATGT
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGT
* * *
48593879 GGCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCTCACAACAT
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGT
* * * * *
48593927 CGCCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATACCGT
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGT
* * **
48593975 GACCGATGCCATGTCCAAGATGTGGTCTTACACTGG
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
48594011 TACACATATC
Statistics
Matches: 108, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 108 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (48 bp):
GGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACGT
Found at i:48594385 original size:608 final size:608
Alignment explanation
Indices: 48593226--48594417 Score: 2285
Period size: 608 Copynumber: 2.0 Consensus size: 608
48593216 GTCTCAATGT
* * *
48593226 CGATGCCATGTCCCAGACATGGTCTTATATTGACTCTCATAATGTGGCCGATGCCATGTCCCAGA
1 CGATACCATGTCCCAGACATGGTCTTATACTGACCCTCATAATGTGGCCGATGCCATGTCCCAGA
48593291 CATGGTCTTACACTGGCTCTCACAACATCGCCAATGCCATGTTCCAAACATGGTCTTACACTGGC
66 CATGGTCTTACACTGGCTCTCACAACATCGCCAATGCCATGTTCCAAACATGGTCTTACACTGGC
*
48593356 TCTCATATCGTGACCGATGCCATGTCCAAGACGTGGTCTTACACTGGTACACATATCACCCAAAT
131 TCTCATACCGTGACCGATGCCATGTCCAAGACGTGGTCTTACACTGGTACACATATCACCCAAAT
48593421 GTCATGTCATGGATATCCAATCTATTCCTAAGCTCAACTAGGAATTTACCGCATTAATTTCATCA
196 GTCATGTCATGGATATCCAATCTATTCCTAAGCTCAACTAGGAATTTACCGCATTAATTTCATCA
48593486 TACATTATTCATGATTATATTATGCAAAATAAATCATTGAACACATAATAACGATAAAGTTACCT
261 TACATTATTCATGATTATATTATGCAAAATAAATCATTGAACACATAATAACGATAAAGTTACCT
48593551 TACTTACGTACAACTTACCTCGGTATACAAAAAGTGGACGACTAATTGGCTTTAGTTTACTAGCT
326 TACTTACGTACAACTTACCTCGGTATACAAAAAGTGGACGACTAATTGGCTTTAGTTTACTAGCT
48593616 TGGCCTTTCCCCAGTCTAGCTCCAGATTTCGTATTTCTTAATCTGAAATGATAAAAATTCACTAA
391 TGGCCTTTCCCCAGTCTAGCTCCAGATTTCGTATTTCTTAATCTGAAATGATAAAAATTCACTAA
48593681 TTTAATCATCATATTAATTAATGCATTTCATAAATCATATTTTGGCAAAATAACCATTTTTCCCC
456 TTTAATCATCATATTAATTAATGCATTTCATAAATCATATTTTGGCAAAATAACCATTTTTCCCC
48593746 TAGACTTTCATAAAATTAAGATTTTACCCCTAGCTGAATTCTTCTAATACTAGAAGCAGTAGACT
521 TAGACTTTCATAAAATTAAGATTTTACCCCTAGCTGAATTCTTCTAATACTAGAAGCAGTAGACT
48593811 TACACTGGCTCACATGTTAAGGC
586 TACACTGGCTCACATGTTAAGGC
*
48593834 CGATACCATGTCCCAGACATGGTCTTATACTGACCCTCATAATGTGGCCGATGCTATGTCCCAGA
1 CGATACCATGTCCCAGACATGGTCTTATACTGACCCTCATAATGTGGCCGATGCCATGTCCCAGA
48593899 CATGGTCTTACACTGGCTCTCACAACATCGCCAATGCCATGTTCCAAACATGGTCTTACACTGGC
66 CATGGTCTTACACTGGCTCTCACAACATCGCCAATGCCATGTTCCAAACATGGTCTTACACTGGC
*
48593964 TCTCATACCGTGACCGATGCCATGTCCAAGATGTGGTCTTACACTGGTACACATATCACCCAAAT
131 TCTCATACCGTGACCGATGCCATGTCCAAGACGTGGTCTTACACTGGTACACATATCACCCAAAT
*
48594029 GTCATGTCATGGATATCCAATCTATTCCTAAGTTCAACTAGGAATTTACCGCATTAATTTCATCA
196 GTCATGTCATGGATATCCAATCTATTCCTAAGCTCAACTAGGAATTTACCGCATTAATTTCATCA
48594094 TACATTATTCATGATTATATTATGCAAAATAAATCATTGAACACATAATAACGATAAAGTTACCT
261 TACATTATTCATGATTATATTATGCAAAATAAATCATTGAACACATAATAACGATAAAGTTACCT
48594159 TACTTACGTACAACTTACCTCGGTATACAAAAAGTGGACGACTAATTGGCTTTAGTTTACTAGCT
326 TACTTACGTACAACTTACCTCGGTATACAAAAAGTGGACGACTAATTGGCTTTAGTTTACTAGCT
* * *
48594224 TGGCCTTTCCCTAGTTTAGCTCCGGATTTCGTATTTCTTAATCTGAAATGATAAAAATTCACTAA
391 TGGCCTTTCCCCAGTCTAGCTCCAGATTTCGTATTTCTTAATCTGAAATGATAAAAATTCACTAA
48594289 TTTAATCATCATATTAATTAATGCATTTCATAAATCATATTTTGGCAAAATAACCATTTTTCCCC
456 TTTAATCATCATATTAATTAATGCATTTCATAAATCATATTTTGGCAAAATAACCATTTTTCCCC
*
48594354 TGGACTTTCATAAAATTAAGATTTTACCCCTAGCTGAATTCTTCTAATACTAGAAGCAGTAGAC
521 TAGACTTTCATAAAATTAAGATTTTACCCCTAGCTGAATTCTTCTAATACTAGAAGCAGTAGAC
48594418 AATTCCCATC
Statistics
Matches: 573, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
608 573 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (608 bp):
CGATACCATGTCCCAGACATGGTCTTATACTGACCCTCATAATGTGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTGGCTCTCACAACATCGCCAATGCCATGTTCCAAACATGGTCTTACACTGGC
TCTCATACCGTGACCGATGCCATGTCCAAGACGTGGTCTTACACTGGTACACATATCACCCAAAT
GTCATGTCATGGATATCCAATCTATTCCTAAGCTCAACTAGGAATTTACCGCATTAATTTCATCA
TACATTATTCATGATTATATTATGCAAAATAAATCATTGAACACATAATAACGATAAAGTTACCT
TACTTACGTACAACTTACCTCGGTATACAAAAAGTGGACGACTAATTGGCTTTAGTTTACTAGCT
TGGCCTTTCCCCAGTCTAGCTCCAGATTTCGTATTTCTTAATCTGAAATGATAAAAATTCACTAA
TTTAATCATCATATTAATTAATGCATTTCATAAATCATATTTTGGCAAAATAACCATTTTTCCCC
TAGACTTTCATAAAATTAAGATTTTACCCCTAGCTGAATTCTTCTAATACTAGAAGCAGTAGACT
TACACTGGCTCACATGTTAAGGC
Found at i:48602672 original size:63 final size:63
Alignment explanation
Indices: 48602569--48602693 Score: 205
Period size: 63 Copynumber: 2.0 Consensus size: 63
48602559 ACAGACAACC
* * *
48602569 ACTGTGTACCTCATGAAGAACTTTCTGAATCAAGTTAGTATCTTTTAGTACACGAATCCTACT
1 ACTGTGTACCTCATGAAAAACTTTCTGAATCAACTCAGTATCTTTTAGTACACGAATCCTACT
* *
48602632 ACTGTGTGCCTCATGAAAAATTTTCTGAATCAACTCAGTATCTTTTAGTACACGAATCCTAC
1 ACTGTGTACCTCATGAAAAACTTTCTGAATCAACTCAGTATCTTTTAGTACACGAATCCTAC
48602694 CTCGAAACAT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (63 bp):
ACTGTGTACCTCATGAAAAACTTTCTGAATCAACTCAGTATCTTTTAGTACACGAATCCTACT
Found at i:48609787 original size:46 final size:46
Alignment explanation
Indices: 48609737--48609912 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
48609727 TGGTTGAGCA
*
48609737 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * *
48609783 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
*
48609828 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * *
48609876 CCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48609913 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 5 0.05
45 4 0.04
46 63 0.57
47 29 0.26
48 4 0.04
50 6 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:48609893 original size:93 final size:93
Alignment explanation
Indices: 48609734--48609904 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
48609724 GGATGGTTGA
* * *
48609734 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
48609799 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
48609827 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
48609892 TGAGTTCGAGTTC
66 TGAGTCCGAGTTC
48609905 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48614457 original size:47 final size:47
Alignment explanation
Indices: 48614387--48614681 Score: 491
Period size: 47 Copynumber: 6.3 Consensus size: 47
48614377 CCCTTCGGGA
* * * *
48614387 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
48614434 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48614481 CGTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
*
48614528 CTTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48614575 CTTATCACATATATACATATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
48614622 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48614669 TTTACCACATATA
1 CTTATCACATATA
48614682 CATATCTTAT
Statistics
Matches: 236, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 236 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
Found at i:48614535 original size:22 final size:22
Alignment explanation
Indices: 48614415--48614584 Score: 67
Period size: 22 Copynumber: 7.3 Consensus size: 22
48614405 TTTCACATCC
*
48614415 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * *
48614437 ATCACATATATACACATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
48614461 CATCACATTGGCCATTCGGCCGT
1 -ATCACATTGGCCATTCGGCCTT
** * *
48614484 ATCACATATATACACATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
48614508 CGTCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
** * *
48614531 ATCACATATATACACATTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
*
48614555 CGTCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
48614578 ATCACAT
1 ATCACAT
48614585 ATATACATAT
Statistics
Matches: 102, Mismatches: 31, Indels: 30
0.63 0.19 0.18
Matches are distributed among these distances:
22 41 0.40
23 14 0.14
24 14 0.14
25 33 0.32
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:48618414 original size:40 final size:40
Alignment explanation
Indices: 48618315--48618660 Score: 536
Period size: 40 Copynumber: 8.7 Consensus size: 40
48618305 CCAGCATGAT
* * *
48618315 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
* **
48618355 TACT-TTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
* *
48618394 TGCCCTTCGGGGCTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
**
48618434 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
*
48618474 TGCCCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
**
48618514 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
48618554 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
**
48618594 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
48618634 TGCTCTTC-GGGCTTAGCCCGGAT-CATC
1 TGCTCTTCGGGGCTTAGCCCGGATACATC
48618661 GTCGAGACCT
Statistics
Matches: 278, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
38 4 0.01
39 45 0.16
40 229 0.82
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGGCTTAGCCCGGATACATCACTAGCACGAA
Found at i:48618473 original size:80 final size:80
Alignment explanation
Indices: 48618319--48618660 Score: 600
Period size: 80 Copynumber: 4.3 Consensus size: 80
48618309 CATGATTGCT
* * * *
48618319 CTTCGGGGTTTAGCACGGATATATCACTAGCACGAATACT-TTCGGAACTTAGCCCGGATACATC
1 CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
48618383 ACTAGCACGAATGCC
66 ACTAGCACGAATGCC
*
48618398 CTTCGGGGCTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
1 CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
48618463 ACTAGCACGAATGCC
66 ACTAGCACGAATGCC
48618478 CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
1 CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
*
48618543 ACTAGCACGAATGCT
66 ACTAGCACGAATGCC
48618558 CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
1 CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
*
48618623 ACTAGCACGAATGCT
66 ACTAGCACGAATGCC
48618638 CTTC-GGGCTTAGCCCGGAT-CATC
1 CTTCGGGGCTTAGCCCGGATACATC
48618661 GTCGAGACCT
Statistics
Matches: 257, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
78 4 0.02
79 52 0.20
80 201 0.78
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.23
Consensus pattern (80 bp):
CTTCGGGGCTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATC
ACTAGCACGAATGCC
Found at i:48618783 original size:38 final size:38
Alignment explanation
Indices: 48618714--48618788 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
48618704 GAATTTTAAT
*
48618714 CCGGACATAATCTCTGTACATAGCCATCGGGTCTTTAC
1 CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
* *
48618752 CCGGACATAATCTCT-TCATATAGTCAGCGGGTCTTTA
1 CCGGACATAATCTCTGT-ACATAGCCAGCGGGTCTTTA
48618789 AACTCGGATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (38 bp):
CCGGACATAATCTCTGTACATAGCCAGCGGGTCTTTAC
Found at i:48621279 original size:47 final size:47
Alignment explanation
Indices: 48621209--48621501 Score: 464
Period size: 47 Copynumber: 6.3 Consensus size: 47
48621199 CCCTTCGGGA
* * * *
48621209 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
48621256 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48621303 CGTATCACATATATACACATTCACATTCGTCACATTGGCCATTCGG-
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48621349 -TTATCACATATATACACATTCACATTCGTCACATTGGCCATTTGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48621395 CTTATCACATATATACATATTCACATTCGTCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
48621442 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
* *
48621489 TTTACCACATATA
1 CTTATCACATATA
48621502 CATATCTTAT
Statistics
Matches: 230, Mismatches: 14, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
45 43 0.19
47 187 0.81
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACATTCACATTCATCACATTGGCCATTCGGC
Found at i:48621390 original size:92 final size:93
Alignment explanation
Indices: 48621211--48621488 Score: 450
Period size: 92 Copynumber: 3.0 Consensus size: 93
48621201 CTTCGGGACT
* * * * *
48621211 TATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACACAT
1 TATCACATATATACACATTCACATTCGTCACATTGGCCATTCGG-CTTATCACATATATACACAT
48621276 TCACATTCATCACATTGGCCATTCGGCCG
65 TCACATTCATCACATTGGCCATTCGGCCG
48621305 TATCACATATATACACATTCACATTCGTCACATTGGCCATTCGG-TTATCACATATATACACATT
1 TATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGCTTATCACATATATACACATT
* * *
48621369 CACATTCGTCACATTGGCCATTTGGCCT
66 CACATTCATCACATTGGCCATTCGGCCG
*
48621397 TATCACATATATACATATTCACATTCGTCACATTGGCCATTCGGCCTTATCACATATATACACAT
1 TATCACATATATACACATTCACATTCGTCACATTGGCCATTCGG-CTTATCACATATATACACAT
48621462 TCACATTCATCACATTGGCCATTCGGC
65 TCACATTCATCACATTGGCCATTCGGC
48621489 TTTACCACAT
Statistics
Matches: 171, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
92 88 0.51
94 83 0.49
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (93 bp):
TATCACATATATACACATTCACATTCGTCACATTGGCCATTCGGCTTATCACATATATACACATT
CACATTCATCACATTGGCCATTCGGCCG
Found at i:48621460 original size:139 final size:140
Alignment explanation
Indices: 48621209--48621501 Score: 489
Period size: 139 Copynumber: 2.1 Consensus size: 140
48621199 CCCTTCGGGA
* *
48621209 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
1 CTTATCACATATATACACATTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
*
48621274 ATTCACATTCATCACATTGGCCATTCGGCCGTATCACATATATACACATTCACATTCGTCACATT
66 ATTCACATTCATCACATTGGCCATTCGGCCGTATCACATATATACACATTCACATTCATCACATT
48621339 GGCCATTCGG
131 GGCCATTCGG
* * *
48621349 -TTATCACATATATACACATTCACATTCGTCACATTGGCCATTTGGCCTTATCACATATATACAT
1 CTTATCACATATATACACATTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
* *
48621413 ATTCACATTCGTCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATT
66 ATTCACATTCATCACATTGGCCATTCGGCCGTATCACATATATACACATTCACATTCATCACATT
48621478 GGCCATTCGG
131 GGCCATTCGG
*
48621488 CTTTACCACATATA
1 C-TTATCACATATA
48621502 CATATCTTAT
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
139 131 0.92
141 11 0.08
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (140 bp):
CTTATCACATATATACACATTCACATCCATCACATTGGCCATTTGGCCTTATCACATATATACAC
ATTCACATTCATCACATTGGCCATTCGGCCGTATCACATATATACACATTCACATTCATCACATT
GGCCATTCGG
Found at i:48624358 original size:15 final size:15
Alignment explanation
Indices: 48624338--48624404 Score: 80
Period size: 15 Copynumber: 4.5 Consensus size: 15
48624328 GTATCTTGGG
48624338 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
48624353 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
48624368 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
48624383 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
48624398 TTTCTTT
1 TTTCTTT
48624405 TTTTGGTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 43 1.00
ACGTcount: A:0.10, C:0.18, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:48624374 original size:30 final size:30
Alignment explanation
Indices: 48624329--48624404 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
48624319 CATAGTATCG
* *
48624329 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATCCTGGATCTCTC
* * *
48624359 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATCCTGGATCTCTC
48624389 TATCTTGGATTTCTTT
1 TATCTTGGATTTCTTT
48624405 TTTTGGTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
29 1 0.03
30 37 0.95
31 1 0.03
ACGTcount: A:0.11, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATCCTGGATCTCTC
Found at i:48626957 original size:93 final size:93
Alignment explanation
Indices: 48626798--48626968 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
48626788 GGATGGTTGA
* * *
48626798 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATAGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
48626863 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
48626891 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGATCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
48626956 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
48626969 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:48626975 original size:46 final size:46
Alignment explanation
Indices: 48626802--48626976 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
48626792 GGTTGAGCAT
* * * *
48626802 CCGAACTCGTTGAGTTGAGTCCGAGTTCAGTTATAGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
48626848 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
48626893 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
48626941 CCGATCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
48626977 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 4 0.04
46 63 0.56
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:48630602 original size:27 final size:27
Alignment explanation
Indices: 48630558--48630631 Score: 67
Period size: 27 Copynumber: 2.7 Consensus size: 27
48630548 TACAGAAATG
* * *
48630558 CCCTCGACTTGTAAAATTACCAAAGTA
1 CCCTCGATTTATAGAATTACCAAAGTA
*****
48630585 CCCTCGATTTATAGAATTACTGTTTTA
1 CCCTCGATTTATAGAATTACCAAAGTA
*
48630612 CCCTCGATTTACAGAATTAC
1 CCCTCGATTTATAGAATTAC
48630632 TATTTTACCC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTACCAAAGTA
Found at i:48630630 original size:54 final size:54
Alignment explanation
Indices: 48630572--48630674 Score: 134
Period size: 54 Copynumber: 1.9 Consensus size: 54
48630562 CGACTTGTAA
* * * *
48630572 AATTACCAAAGTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAG
* ***
48630626 AATTACTATTTTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
1 AATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATT
48630675 GTGAAATTAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 41 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCAATTTACAAAATTACCGTTTTACCCTCGATTTACAG
Found at i:48630632 original size:27 final size:27
Alignment explanation
Indices: 48630583--48630674 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
48630573 ATTACCAAAG
*
48630583 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
48630610 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
48630637 TACCCTCAATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
48630664 TACCCTCGATT
1 TACCCTCGATT
48630675 GTGAAATTAC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:48630736 original size:27 final size:27
Alignment explanation
Indices: 48630706--48630828 Score: 131
Period size: 27 Copynumber: 4.6 Consensus size: 27
48630696 TATAGGGTAG
48630706 AATTACCAAAATACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
48630733 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
48630760 AATTACCGAAATA-CCTTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
* **
48630787 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
48630814 AATTTCAAAAATACC
1 AATTACCAAAATACC
48630829 GTTGACTTTC
Statistics
Matches: 77, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.03
27 72 0.94
28 3 0.04
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:48630745 original size:54 final size:53
Alignment explanation
Indices: 48630664--48630807 Score: 125
Period size: 54 Copynumber: 2.7 Consensus size: 53
48630654 ATTACCGTTT
* * **
48630664 TACCCTCGA-TTGTGAAATTACTGAAATATCCCT-ATAGGGT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATA-CCCTGAT-GGGTGA-AATTACCAAAA
* ** *
48630717 TACCC-CTAATTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACC-CTGATGGGTGAAATTACCAAAA
*
48630771 TACCTTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACCCTCAATTTGTAAAATTACCAAAATA-CCCTGAT
48630808 TTACAAAATT
Statistics
Matches: 74, Mismatches: 10, Indels: 13
0.76 0.10 0.13
Matches are distributed among these distances:
52 1 0.01
53 8 0.11
54 60 0.81
55 5 0.07
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCTGATGGGTGAAATTACCAAAA
Found at i:48630817 original size:54 final size:54
Alignment explanation
Indices: 48630706--48630907 Score: 149
Period size: 54 Copynumber: 3.7 Consensus size: 54
48630696 TATAGGGTAG
* ***
48630706 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * *
48630760 AATTACCGAAATA-CCTTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCACTGATTTACAA
* * ** * * * *
48630814 AATTTCAAAAATACCGTTGACTTTCTAAAAATTA-TAGAAATACCATTTG-TTTACAA
1 AATTACCAAAATACCCCT-AATTTGT-AAAATTACCA-AAATACCA-CTGATTTACAA
** * ** *
48630870 AATTACTGAAATACCCTTGGTTTGTAAATTTACCAAAA
1 AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAA
48630908 CACCCTTGTA
Statistics
Matches: 116, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
53 3 0.03
54 62 0.53
55 14 0.12
56 35 0.30
57 2 0.02
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (54 bp):
AATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGATTTACAA
Found at i:48630892 original size:27 final size:27
Alignment explanation
Indices: 48630841--48630892 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
48630831 TGACTTTCTA
*
48630841 AAAATTATAGAAATACCATTTGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
48630868 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
48630893 GTAAATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:48630988 original size:27 final size:27
Alignment explanation
Indices: 48630909--48631010 Score: 73
Period size: 27 Copynumber: 3.8 Consensus size: 27
48630899 TTACCAAAAC
* * * **
48630909 ACCCTTGTAGGTTGAAATGACTAAAAT
1 ACCCCTGTAGGGTAAAATGACTGTAAT
* * *
48630936 ACCCCTAATA-GGTAAAAAGACCGTAA-
1 ACCCCT-GTAGGGTAAAATGACTGTAAT
*
48630962 AGCCCCTGTAGGGTAAAGTGACTGTAAT
1 A-CCCCTGTAGGGTAAAATGACTGTAAT
* *
48630990 ACCCTTGTATGGTAAAATGAC
1 ACCCCTGTAGGGTAAAATGAC
48631011 GAATATGCCC
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
26 3 0.05
27 50 0.89
28 3 0.05
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
ACCCCTGTAGGGTAAAATGACTGTAAT
Found at i:48631901 original size:24 final size:25
Alignment explanation
Indices: 48631820--48631888 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
48631810 GTAAGTGCTA
* * *
48631820 AAAGGACTCTGCCCCAGTTTA-CCG
1 AAAGGGCTTTGCCCCAGTTTATCAG
48631844 AGAAGGGCTTTGCCCCAGTTTATCAG
1 A-AAGGGCTTTGCCCCAGTTTATCAG
*
48631870 AAAGGGCTTTGCCCTAGTT
1 AAAGGGCTTTGCCCCAGTT
48631889 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 1 0.03
25 35 0.90
26 3 0.08
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTATCAG
Found at i:48632095 original size:42 final size:42
Alignment explanation
Indices: 48632036--48632127 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
48632026 TAGTCTCCCC
*
48632036 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
*
48632078 AAATGGGTTTGCATACATCCATTGACATTACACGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
48632120 AAATGGGC
1 AAATGGGC
48632128 CTAAGGGCCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACACGTGATATTG
Found at i:48632187 original size:31 final size:31
Alignment explanation
Indices: 48632151--48632297 Score: 231
Period size: 31 Copynumber: 4.7 Consensus size: 31
48632141 CGTTTACAGT
* *
48632151 AAAGGCTTCGGCCTAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
48632182 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
**
48632213 AAAGGCTTTAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
**
48632244 AAAGGCTTTAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
48632275 AAAGGCTTCGGCCCAGTGATATG
1 AAAGGCTTCGGCCCAGTGATATG
48632298 TCAAGACTAA
Statistics
Matches: 108, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 108 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:48635548 original size:40 final size:40
Alignment explanation
Indices: 48635469--48635626 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
48635459 TTCGAATGAT
* * * *
48635469 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
48635509 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
48635549 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
48635589 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
48635627 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:48635647 original size:80 final size:80
Alignment explanation
Indices: 48635469--48635656 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
48635459 TTCGAATGAT
* *
48635469 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
48635534 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
48635549 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
48635610 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
48635630 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
48635657 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:48643623 original size:40 final size:40
Alignment explanation
Indices: 48643544--48643701 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
48643534 TTCGAATGAT
* * * *
48643544 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
48643584 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
48643624 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
48643664 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
48643702 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:48643722 original size:80 final size:80
Alignment explanation
Indices: 48643544--48643731 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
48643534 TTCGAATGAT
* *
48643544 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
48643609 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
48643624 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
48643685 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
48643705 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
48643732 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:48648945 original size:42 final size:43
Alignment explanation
Indices: 48648836--48648946 Score: 111
Period size: 44 Copynumber: 2.6 Consensus size: 43
48648826 CCGATATGTT
**
48648836 TTTTGTGTAAGACCAC-ATCTGGGACGTTGGCATCGACTTATGA
1 TTTTGTGTAAGACC-CTATCTGGGACGTTCACATCGACTTATGA
* * * * *
48648879 TTTACGTGTAAGACCATGTTTGGGATGTTCACATCGTAC-T-TGA
1 TTT-TGTGTAAGACCCTATCTGGGACGTTCACATCG-ACTTATGA
48648922 TTTTGTGTAAGACCCTATCTGGGAC
1 TTTTGTGTAAGACCCTATCTGGGAC
48648947 AGTGGCATCA
Statistics
Matches: 53, Mismatches: 12, Indels: 7
0.74 0.17 0.10
Matches are distributed among these distances:
42 17 0.32
43 9 0.17
44 25 0.47
45 2 0.04
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (43 bp):
TTTTGTGTAAGACCCTATCTGGGACGTTCACATCGACTTATGA
Found at i:48655780 original size:46 final size:46
Alignment explanation
Indices: 48655727--48655849 Score: 210
Period size: 46 Copynumber: 2.7 Consensus size: 46
48655717 TTGGGCATCT
* *
48655727 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
48655773 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
* *
48655819 GAGCTCGTTGAGTTGAGTTCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
48655850 GGGGCGGGTT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
Found at i:48657604 original size:45 final size:43
Alignment explanation
Indices: 48657481--48657639 Score: 169
Period size: 45 Copynumber: 3.6 Consensus size: 43
48657471 CGCACAGTAT
* *
48657481 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATG-CCGATAAGATAA
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGTCAG-TGAGAT-A
* *
48657526 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGTAAGTGAGATA
1 TATTC-GGGCTTTGAGCCTAGCAGGCTATAATGTCAGTGAGATA
* * *
48657570 CTATTCGGGCTTTCGAGCCTAGTAGGCTATAATGTCGGTGAAATGA
1 -TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGTCAGTGAGAT-A
*
48657616 TA-TCGGGCTTCGAGCCTAGCAGGC
1 TATTCGGGCTTTGAGCCTAGCAGGC
48657640 GAAATGCCGG
Statistics
Matches: 98, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
43 12 0.12
44 15 0.15
45 67 0.68
46 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
TATTCGGGCTTTGAGCCTAGCAGGCTATAATGTCAGTGAGATA
Found at i:48658070 original size:20 final size:19
Alignment explanation
Indices: 48658047--48658091 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
48658037 ATGAAATTTT
48658047 AATTATTATTATGAGATAAA
1 AATTATTATTATGAGA-AAA
*
48658067 AATTATTATTATTAGAAAA
1 AATTATTATTATGAGAAAA
48658086 ATATTA
1 A-ATTA
48658092 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (19 bp):
AATTATTATTATGAGAAAA
Found at i:48658226 original size:2 final size:2
Alignment explanation
Indices: 48658219--48658249 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
48658209 AGATAGGAAA
*
48658219 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48658250 AAAGTATTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:48659538 original size:40 final size:40
Alignment explanation
Indices: 48659493--48659671 Score: 259
Period size: 40 Copynumber: 4.5 Consensus size: 40
48659483 ACAACCCAAT
* * ** *
48659493 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCATAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
* *
48659533 TGCCTTCGGGACTTAACCCGAAAATAGCAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
*
48659573 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
* *
48659613 TGCTTTCGAGACTTAACCCGGAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
*
48659653 TGCCTTCTGGACTTAACCC
1 TGCCTTCGGGACTTAACCC
48659672 AGATATAATC
Statistics
Matches: 123, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 123 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
Found at i:48661021 original size:40 final size:40
Alignment explanation
Indices: 48660976--48661202 Score: 348
Period size: 40 Copynumber: 5.7 Consensus size: 40
48660966 ACAACCTAAT
* * * *
48660976 TGCCTTCGGGATTTAGCCCGGATGA-AACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGA-AATAACAACCAGCACGAA
*
48661016 TGCCTTCGGGACTTAACCCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
48661056 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
48661096 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGTATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* *
48661136 TGCTTTCGGGACTTAACCCGGAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
48661176 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
48661203 TCCTCAATTG
Statistics
Matches: 174, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 1 0.01
40 173 0.99
ACGTcount: A:0.33, C:0.27, G:0.21, T:0.19
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:48663508 original size:46 final size:46
Alignment explanation
Indices: 48663335--48663508 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
48663325 TGTAACCCGC
* * *
48663335 CCATAAGTGAACTC--ACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
48663379 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
48663429 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
48663472 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
48663509 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 3 0.03
44 15 0.14
45 2 0.02
46 52 0.47
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:48663527 original size:46 final size:45
Alignment explanation
Indices: 48663384--48663527 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
48663374 CGCATCCATA
* *
48663384 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
48663432 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
48663477 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
48663523 AGTGA
1 AGTGA
48663528 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:48671721 original size:40 final size:40
Alignment explanation
Indices: 48671640--48671865 Score: 355
Period size: 40 Copynumber: 5.7 Consensus size: 40
48671630 TTCAACCAAT
* * ** *
48671640 TGCCTTCGGGATTTAGCCC-GATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
48671679 TGCCTTCGGGACTTAACCCGGAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
48671719 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
48671759 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
* **
48671799 TGCTTTCGGGACTTAACCCGGAAATAACAACCAGCATAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
*
48671839 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
48671866 TCCTCAATTG
Statistics
Matches: 174, Mismatches: 12, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 17 0.10
40 157 0.90
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAA
Found at i:48674988 original size:32 final size:32
Alignment explanation
Indices: 48674947--48675011 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
48674937 TAAGGGTGGC
48674947 TAACGTTGGGACTAAGGGCATTTTTGCCTCTT
1 TAACGTTGGGACTAAGGGCATTTTTGCCTCTT
48674979 TAACGTTGGGACTAAGGGCATTTTTGCCTCTT
1 TAACGTTGGGACTAAGGGCATTTTTGCCTCTT
48675011 T
1 T
48675012 CTTTTGGCTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.38
Consensus pattern (32 bp):
TAACGTTGGGACTAAGGGCATTTTTGCCTCTT
Found at i:48677012 original size:22 final size:22
Alignment explanation
Indices: 48676986--48677029 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
48676976 TTGAGTTTAT
48676986 TTGTTGCATTGCTTAAAACTTA
1 TTGTTGCATTGCTTAAAACTTA
48677008 TTGTTGCATTGCTTAAAACTTA
1 TTGTTGCATTGCTTAAAACTTA
48677030 CTAAGCTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (22 bp):
TTGTTGCATTGCTTAAAACTTA
Found at i:48679603 original size:28 final size:27
Alignment explanation
Indices: 48679551--48679603 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
48679541 CTATTCAGAA
* *
48679551 ATCAGTGTTAACTAGGCCTTAGCCCAT
1 ATCAGTATTAACTAGGCCATAGCCCAT
*
48679578 ATCAGTATTAATCTGGGCCATAGCCC
1 ATCAGTATTAA-CTAGGCCATAGCCC
48679604 CTTACAGTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 10 0.45
28 12 0.55
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
ATCAGTATTAACTAGGCCATAGCCCAT
Found at i:48679688 original size:60 final size:59
Alignment explanation
Indices: 48679565--48679699 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 59
48679555 GTGTTAACTA
* *
48679565 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTATACTG
1 GGCC-TAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTATACTG
* * *
48679626 GGCCTAGCCCATATCAGTATCAATCTGGGTCGTAGCCCTATTACAAGT-C-GAGATATATTG
1 GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TATACTG
*
48679686 GGCCTTGCCCATAT
1 GGCCTAGCCCATAT
48679700 TAACACAGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
59 3 0.05
60 51 0.78
61 8 0.12
62 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (59 bp):
GGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCATTACAGTACAGAGTATACTG
Found at i:48679735 original size:19 final size:20
Alignment explanation
Indices: 48679692--48679737 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
48679682 ATTGGGCCTT
48679692 GCCCATATTAACACAGTTGG
1 GCCCATATTAACACAGTTGG
* *
48679712 GCCCATTTTAATACAGTT-G
1 GCCCATATTAACACAGTTGG
48679731 GCCCATA
1 GCCCATA
48679738 ATAAAATAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (20 bp):
GCCCATATTAACACAGTTGG
Found at i:48684993 original size:27 final size:26
Alignment explanation
Indices: 48684949--48685024 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 26
48684939 TGTATCTGGC
* *
48684949 TTGTAAAATTACCAAAATACTCCTGAT
1 TTGT-AAATTATCGAAATACTCCTGAT
48684976 TTGTGAAATTATCGAAATACT-C-GAT
1 TTGT-AAATTATCGAAATACTCCTGAT
* *
48685001 TTGTAAAATATCGAAATACCCCTG
1 TTGTAAATTATCGAAATACTCCTG
48685025 TAGGGTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
24 14 0.33
25 8 0.19
26 2 0.05
27 18 0.43
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (26 bp):
TTGTAAATTATCGAAATACTCCTGAT
Found at i:48685017 original size:24 final size:26
Alignment explanation
Indices: 48684949--48685024 Score: 84
Period size: 24 Copynumber: 2.9 Consensus size: 26
48684939 TGTATCTGGC
* *
48684949 TTGTAAAATTACCAAAATACTCCTGAT
1 TTGTAAAA-TATCGAAATACTCCTGAT
*
48684976 TTGTGAAATTATCGAAATACT-C-GAT
1 TTGT-AAAATATCGAAATACTCCTGAT
*
48685001 TTGTAAAATATCGAAATACCCCTG
1 TTGTAAAATATCGAAATACTCCTG
48685025 TAGGGTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
24 14 0.34
25 8 0.20
26 2 0.05
27 14 0.34
28 3 0.07
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (26 bp):
TTGTAAAATATCGAAATACTCCTGAT
Found at i:48685047 original size:27 final size:27
Alignment explanation
Indices: 48685012--48685309 Score: 364
Period size: 27 Copynumber: 11.0 Consensus size: 27
48685002 TGTAAAATAT
*
48685012 CGAAATACCCCTGTAGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
** *
48685039 TAAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
48685066 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
48685093 CGAAATACCCCTATAGGGCAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
48685120 TGAAATAACCCTGTAGGGTAGACTTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
48685147 CGAAATACCTCTGTAGGGTAGAATGAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
48685174 TGAAATACCTCTGTAGGGTGGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
48685201 CGAAATACCCTTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
48685228 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
48685255 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
48685282 CGAGATACCCTTGT-GTGGTAAAATTAC
1 CGAAATACCCCTGTAG-GGTAGAATTAC
48685309 C
1 C
48685310 ATTTTGCCCC
Statistics
Matches: 230, Mismatches: 40, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
26 1 0.00
27 229 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:48685548 original size:25 final size:25
Alignment explanation
Indices: 48685514--48685683 Score: 250
Period size: 25 Copynumber: 6.8 Consensus size: 25
48685504 AGGAAATGCT
*
48685514 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
48685539 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* * *
48685564 AAAAGGGCTTTGCCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCG
* *
48685589 AAAAGGGCTTTGCCCTAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACCG
48685614 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCG
* ***
48685639 AAAAGGGCTTTGCCCCAATTTATAA
1 AAAAGGGCTTTGCCCCAGTTTACCG
48685664 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
48685684 ATTAAAAGAG
Statistics
Matches: 129, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 129 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCG
Found at i:48685637 original size:75 final size:75
Alignment explanation
Indices: 48685514--48685683 Score: 313
Period size: 75 Copynumber: 2.3 Consensus size: 75
48685504 AGGAAATGCT
48685514 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCC
*
48685579 CAATTTATCA
66 CAATTTATAA
*
48685589 AAAAGGGCTTTGCCCTAGTTTACTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCC
1 AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCC
48685654 CAATTTATAA
66 CAATTTATAA
*
48685664 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
48685684 ATTAAAAGAG
Statistics
Matches: 92, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 92 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (75 bp):
AAAAGGGCTTTGCCCTAGTTTACCGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCC
CAATTTATAA
Found at i:48686658 original size:45 final size:44
Alignment explanation
Indices: 48686594--48686765 Score: 215
Period size: 45 Copynumber: 3.9 Consensus size: 44
48686584 CGCACTGTAT
48686594 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
48686639 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAC
1 TATTCGGG-CTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* * *
48686684 TATTCAGGCTTTCGAGACTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * * *
48686729 TA-TCGGGCTTCGAGCCTAGTAGGCGA-AATACCGGTGA
1 TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
48686766 ATGAATTCAG
Statistics
Matches: 114, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
42 10 0.09
43 12 0.11
44 11 0.10
45 80 0.70
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (44 bp):
TATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:48687677 original size:20 final size:21
Alignment explanation
Indices: 48687643--48687696 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
48687633 TGATGATATT
*
48687643 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
48687664 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
48687684 TTTTATTATTTTA
1 TTATATTATTTTA
48687697 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:48687702 original size:11 final size:11
Alignment explanation
Indices: 48687686--48687724 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
48687676 ATGAGATATT
48687686 TTATTATTTTA
1 TTATTATTTTA
*
48687697 TTATTATTTCA
1 TTATTATTTTA
*
48687708 TTATTATTTTT
1 TTATTATTTTA
48687719 TTATTA
1 TTATTA
48687725 ATTATTTAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:48689920 original size:46 final size:46
Alignment explanation
Indices: 48689867--48690006 Score: 192
Period size: 46 Copynumber: 3.0 Consensus size: 46
48689857 GTGTGCTCTC
* *
48689867 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAACT
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
48689913 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
48689959 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
48690005 TG
1 TG
48690007 TCAAAGATAA
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 84 0.99
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.24
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:48697349 original size:43 final size:43
Alignment explanation
Indices: 48697300--48697455 Score: 179
Period size: 43 Copynumber: 3.6 Consensus size: 43
48697290 TATCCCAAAT
* * *
48697300 ATGGTCTTACATGTTATCACATATTGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATTGATGCCAATGTCCCAGAC
* * * ** *
48697343 AAGGTCTTACACGAAATCATATAAAGATGTCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATATTGATGCCAATGTCCCAGAC
**
48697386 ATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCACATAT-TGATGCCAATGTCCCAGAC
* *
48697429 ATGGTCTTACATGTAATCACATCTTGA
1 ATGGTCTTACACGTAATCACATATTGA
48697456 CAACCTAACG
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
42 1 0.01
43 89 0.98
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCACATATTGATGCCAATGTCCCAGAC
Found at i:48703677 original size:13 final size:13
Alignment explanation
Indices: 48703659--48703689 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
48703649 TAGTTTCAAG
48703659 GCACGGGCGTGTC
1 GCACGGGCGTGTC
48703672 GCACGGGCGTGTC
1 GCACGGGCGTGTC
48703685 GCACG
1 GCACG
48703690 CCCGTGTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.10, C:0.32, G:0.45, T:0.13
Consensus pattern (13 bp):
GCACGGGCGTGTC
Found at i:48709866 original size:14 final size:13
Alignment explanation
Indices: 48709835--48709879 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
48709825 AAGTGAAATT
*
48709835 AATAAAAACATAA
1 AATAAAAAAATAA
*
48709848 TATAAAAAAATAA
1 AATAAAAAAATAA
*
48709861 AA-ATAAAAATAA
1 AATAAAAAAATAA
48709873 AATAAAA
1 AATAAAA
48709880 TTAAACATCA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (13 bp):
AATAAAAAAATAA
Found at i:48710835 original size:71 final size:71
Alignment explanation
Indices: 48710747--48710910 Score: 310
Period size: 71 Copynumber: 2.3 Consensus size: 71
48710737 GAGATGTATC
48710747 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
48710812 AGGACA
66 AGGACA
*
48710818 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
48710883 CGGACA
66 AGGACA
48710889 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
48710911 AGACAAATCG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:48727300 original size:28 final size:28
Alignment explanation
Indices: 48727268--48727337 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
48727258 ATAGTAAGTC
48727268 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
48727296 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
48727324 CGCACACTTAGTGC
1 CGCACACTTAGTGC
48727338 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:48728588 original size:30 final size:30
Alignment explanation
Indices: 48728554--48728615 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
48728544 CCTTTTCATA
48728554 TTTCATA-TTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACT-GGCCGAAGCCT
**
48728584 TTTCATATTTCATATTACTGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGCCGAAGCCT
48728614 TT
1 TT
48728616 ACTGTGAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGCCGAAGCCT
Found at i:48728879 original size:22 final size:23
Alignment explanation
Indices: 48728823--48728940 Score: 177
Period size: 23 Copynumber: 5.1 Consensus size: 23
48728813 CCTAGCCTCT
*
48728823 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
48728846 TTTCAATAACTGGGGCATAAGCCC
1 TTT-AATAACTGGGGCATAAGCCC
48728870 TTT-ATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
48728892 TTTTGATAACT-GGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
48728915 TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
48728938 TTT
1 TTT
48728941 TTCACTTCCT
Statistics
Matches: 90, Mismatches: 1, Indels: 8
0.91 0.01 0.08
Matches are distributed among these distances:
22 29 0.32
23 33 0.37
24 28 0.31
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:48728910 original size:23 final size:24
Alignment explanation
Indices: 48728802--48728941 Score: 182
Period size: 24 Copynumber: 6.0 Consensus size: 24
48728792 GCTTTATCAT
*
48728802 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
48728827 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
48728851 ATAACTGGGGCATAAGCCC-TTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
48728873 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
48728897 ATAACT-GGGCATAAGCCC-TTTG
1 ATAACTGGGGCATAAGCCCTTTTA
48728919 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
48728942 TCACTTCCTC
Statistics
Matches: 105, Mismatches: 5, Indels: 11
0.87 0.04 0.09
Matches are distributed among these distances:
22 29 0.28
23 29 0.28
24 35 0.33
25 12 0.11
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:48729016 original size:20 final size:20
Alignment explanation
Indices: 48728991--48729051 Score: 113
Period size: 20 Copynumber: 3.0 Consensus size: 20
48728981 TTATGATTAC
48728991 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
48729011 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
48729031 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
48729051 A
1 A
48729052 CCATATTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:48729022 original size:11 final size:11
Alignment explanation
Indices: 48728991--48729046 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
48728981 TTATGATTAC
48728991 ATCATGTGCAT
1 ATCATGTGCAT
*
48729002 ATCA--TACAT
1 ATCATGTGCAT
48729011 ATCATGTGCAT
1 ATCATGTGCAT
*
48729022 ATCA--TACAT
1 ATCATGTGCAT
*
48729031 GTCATGTGCAT
1 ATCATGTGCAT
48729042 ATCAT
1 ATCAT
48729047 ACATACCATA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:48729126 original size:25 final size:25
Alignment explanation
Indices: 48729094--48729141 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48729084 ATACATAAAC
* * *
48729094 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
48729119 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
48729142 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:48730387 original size:27 final size:27
Alignment explanation
Indices: 48730366--48730775 Score: 195
Period size: 27 Copynumber: 14.9 Consensus size: 27
48730356 AAGGGTATTT
*
48730366 TAGTAATTTTGTAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
48730393 TAGTAATTTTGTAAATCAAGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
* *
48730420 TAGTAATTCTATAAATCGTAAAAGGGTAAATCGA
1 TAGTAATTTTGTAAATC----AAGGGTAAA---A
* * * *
48730454 GGGTGGTAATTCTGTAAATCGAGGGTGAAA
1 ---TAGTAATTTTGTAAATCAAGGGTAAAA
* * *
48730484 -CGATAATTCTGTAAATCGAGGGTAAAA
1 TAG-TAATTTTGTAAATCAAGGGTAAAA
* * *
48730511 -CGATAATTATGTAAATC-GGGGTAAAA
1 TAG-TAATTTTGTAAATCAAGGGTAAAA
* * * *
48730537 TGGTAATTCTGTAAATCGAGGGTGAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
** * * *
48730564 CGGTAATTCTATAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
* * *
48730591 -CGATAATTATGTAAATC-GGGGT-AAA
1 TAG-TAATTTTGTAAATCAAGGGTAAAA
** * * *
48730616 CGGTAATTATGTAAATTAGGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
** * *
48730643 CGGTAATTATGTAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
*
48730670 TAGTAATTCTGTAAA-CTAAGAGGTAAAA
1 TAGTAATTTTGTAAATC-AAG-GGTAAAA
** * *
48730698 CGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
** ** *
48730725 CGGTAATTTTACAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCAAGGGTAAAA
** * * *
48730752 CGGTAATTCTATAAATCGAGGGTA
1 TAGTAATTTTGTAAATCAAGGGTA
48730776 CTTTGGTAAT
Statistics
Matches: 324, Mismatches: 39, Indels: 40
0.80 0.10 0.10
Matches are distributed among these distances:
25 16 0.05
26 34 0.10
27 218 0.67
28 22 0.07
29 1 0.00
30 1 0.00
31 9 0.03
33 7 0.02
34 1 0.00
37 15 0.05
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
TAGTAATTTTGTAAATCAAGGGTAAAA
Found at i:48730424 original size:54 final size:54
Alignment explanation
Indices: 48730368--48730775 Score: 401
Period size: 54 Copynumber: 7.4 Consensus size: 54
48730358 GGGTATTTTA
* ** * **
48730368 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * * *
48730422 GTAATTCTATAAATCGTAAAAGGGTAAATCGAGGGTGGTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTGTAAATCG----AGGGTAAA---A---CGGTAATTCTGTAAATCAAGGGTAAAACG
* * * * *
48730486 ATAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATC-GGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * *
48730539 GTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* * * * *
48730593 ATAATTATGTAAATCG-GGGT-AAACGGTAATTATGTAAATTAGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
* **
48730645 GTAATTATGTAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTAAGAGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATC-AAG-GGTAAAACG
* ** *
48730700 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
*
48730754 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTA
48730776 CTTTGGTAAT
Statistics
Matches: 294, Mismatches: 44, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
52 42 0.14
53 53 0.18
54 98 0.33
55 45 0.15
56 1 0.00
57 1 0.00
58 8 0.03
60 8 0.03
61 1 0.00
64 37 0.13
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAAGGGTAAAACG
Found at i:48730526 original size:91 final size:94
Alignment explanation
Indices: 48730368--48730631 Score: 236
Period size: 91 Copynumber: 2.7 Consensus size: 94
48730358 GGGTATTTTA
* ** * * * * *
48730368 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAA-TAGTAATTCTAT
1 GTAATTCTGTAAATCGAGGGTAAACGA-TAATTATGTAAATCGAGGGTAAAACGA-TAATTATGT
48730432 AAATC-GTAAAA-GG-GTAAATCGAGGGT-G
64 AAATCGGTAAAATGGTGTAAATCGAGGGTAG
*
48730459 GTAATTCTGTAAATCGAGGGTGAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGT-AAACGATAATTATGTAAATCGAGGGTAAAACGATAATTATGTA
48730524 AATCGGGGTAAAATGGTAATTCTGTAAATCGAGGGTGAAACG
65 AATC--GGTAAAATGG------TGTAAATCGAGGGT---A-G
* *
48730566 GTAATTCTATAAATCGAGGGTAAAACGATAATTATGTAAATCG-GGGT-AAACGGTAATTATGTA
1 GTAATTCTGTAAATCGAGGGT-AAACGATAATTATGTAAATCGAGGGTAAAACGATAATTATGTA
48730629 AAT
65 AAT
48730632 TAGGGGTAAA
Statistics
Matches: 143, Mismatches: 12, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
91 54 0.38
92 5 0.03
94 6 0.04
95 2 0.01
102 13 0.09
105 18 0.13
106 4 0.03
107 41 0.29
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (94 bp):
GTAATTCTGTAAATCGAGGGTAAACGATAATTATGTAAATCGAGGGTAAAACGATAATTATGTAA
ATCGGTAAAATGGTGTAAATCGAGGGTAG
Found at i:48730543 original size:80 final size:80
Alignment explanation
Indices: 48730458--48730775 Score: 408
Period size: 80 Copynumber: 4.0 Consensus size: 80
48730448 AATCGAGGGT
* * *
48730458 GGTAATTCTGTAAATCGAGGGTGAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTATGT
1 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGT
*
48730523 AAATCGGGGTAAAAT
66 AAATCGGGGTAAAAC
*
48730538 GGTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGT
1 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGT
48730603 AAATCGGGGT-AAAC
66 AAATCGGGGTAAAAC
* * * * * *
48730617 GGTAATTATGTAAAT-TAGGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAA-TAGTAATTCT
1 GGTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGA-TAATTAT
* *
48730680 GTAAACTAAGAGGTAAAAC
64 GTAAA-T-CGGGGTAAAAC
* * * * *
48730699 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTAT
1 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGT
48730764 AAATCGAGGGTA
66 AAATCG-GGGTA
48730776 CTTTGGTAAT
Statistics
Matches: 208, Mismatches: 22, Indels: 15
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.01
79 60 0.29
80 75 0.36
81 9 0.04
82 61 0.29
83 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (80 bp):
GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGT
AAATCGGGGTAAAAC
Found at i:48730783 original size:27 final size:27
Alignment explanation
Indices: 48730726--48730973 Score: 234
Period size: 27 Copynumber: 9.3 Consensus size: 27
48730716 AGGGTAAAAC
****
48730726 GGTAATTTTACAAATCGAGGGTAAAAC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
48730753 GGTAATTCTATAAATCGAGGGTACTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
48730780 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
** ** *
48730807 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
48730834 AGTAATTTCACAAAT-TAGGGGTATTTT
1 GGTAATTTTACAAATCGA-GGGTATTTT
*
48730861 GGTAATTTTACAAA-CTAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
48730887 GATAATTTTACAAA-CTAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* * *
48730913 GGTAATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
* *
48730940 AGTAATTTTACAAAGC-AGGGTATTTT
1 GGTAATTTTACAAATCGAGGGTATTTT
48730966 GGTAATTT
1 GGTAATTT
48730974 GTAAACCAAA
Statistics
Matches: 188, Mismatches: 30, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
26 64 0.34
27 124 0.66
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAATCGAGGGTATTTT
Found at i:48730900 original size:53 final size:53
Alignment explanation
Indices: 48730770--48730973 Score: 207
Period size: 53 Copynumber: 3.8 Consensus size: 53
48730760 CTATAAATCG
* * * * *** *** *
48730770 AGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTAGTAATTTTACAA-ACTAGGGTATTTTGGTAATTTTACAAACCA
* * * *
48730824 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTTTAGTAATTTTACAAACTA-GGGTATTTTGGTAATTTTACAAACCA
*
48730877 AGGGTATTTT-GATAATTTTACAAACTAGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTTAG-TAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCA
48730930 AGGGTATTTTAGTAATTTTACAAAGC-AGGGTATTTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAA-CTAGGGTATTTTGGTAATTT
48730974 GTAAACCAAA
Statistics
Matches: 127, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 23 0.18
53 65 0.51
54 39 0.31
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAACTAGGGTATTTTGGTAATTTTACAAACCA
Found at i:48733807 original size:31 final size:31
Alignment explanation
Indices: 48733772--48733835 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
48733762 TCATAAATCA
48733772 TTTCATATTCCATAACACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
* **
48733803 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAACACTGGGCCGAAGCCT
48733834 TT
1 TT
48733836 ACTGTAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATATTCCATAACACTGGGCCGAAGCCT
Found at i:48734072 original size:24 final size:24
Alignment explanation
Indices: 48734045--48734166 Score: 187
Period size: 24 Copynumber: 5.2 Consensus size: 24
48734035 AGGCCTACCT
*
48734045 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
48734069 CTTTCAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
48734093 CTTTT-ATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
48734116 C-TTTGATAACT-GGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
48734138 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
48734162 CTTTT
1 CTTTT
48734167 TCACTTCCTC
Statistics
Matches: 92, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
22 15 0.16
23 35 0.38
24 42 0.46
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:48734148 original size:46 final size:47
Alignment explanation
Indices: 48734045--48734165 Score: 192
Period size: 46 Copynumber: 2.6 Consensus size: 47
48734035 AGGCCTACCT
*
48734045 CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAGCC
1 CTTTT-ATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCC
*
48734093 CTTTTATAACTGGGGCATAAGCCCTTT-GATAACT-GGGCATAAGCC
1 CTTTTATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCC
48734138 CTTTTGATAACTGGGGCATAAGCCCTTT
1 CTTTT-ATAACTGGGGCATAAGCCCTTT
48734166 TTCACTTCCT
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
45 16 0.23
46 28 0.40
47 21 0.30
48 5 0.07
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (47 bp):
CTTTTATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCC
Found at i:48734250 original size:19 final size:20
Alignment explanation
Indices: 48734216--48734275 Score: 95
Period size: 19 Copynumber: 3.0 Consensus size: 20
48734206 TTATGATTAC
48734216 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
48734236 ATCATGTGC-TATCATACAT
1 ATCATGTGCATATCATACAT
* *
48734255 GTCATGTGCATCTCATACAT
1 ATCATGTGCATATCATACAT
48734275 A
1 A
48734276 CCATATTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 18 0.50
20 18 0.50
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:48734350 original size:25 final size:25
Alignment explanation
Indices: 48734318--48734365 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
48734308 ATACATAAAC
* * *
48734318 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
48734343 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
48734366 CATGGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:48736011 original size:27 final size:27
Alignment explanation
Indices: 48735604--48736030 Score: 426
Period size: 27 Copynumber: 15.8 Consensus size: 27
48735594 GGGTATTTTA
* * *
48735604 GTAATTTTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
48735631 GTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
48735658 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48735685 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48735712 ATAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
48735739 ATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48735766 GTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
*
48735793 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * * *
48735820 ATAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * * *
48735847 GTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTATAAATCGA-GGGTAAAATG
*
48735874 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48735901 GTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTATAAATC-GAGGGTAAAATG
*
48735928 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48735955 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAATG
***
48735982 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTCTATAAATCGAGGGTAAAATG
* * *
48736009 GTAATTTTACAAGTCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
48736031 TTTCAATAAT
Statistics
Matches: 345, Mismatches: 51, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.00
27 342 0.99
28 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAATG
Found at i:48736011 original size:54 final size:54
Alignment explanation
Indices: 48735604--48736030 Score: 471
Period size: 54 Copynumber: 7.9 Consensus size: 54
48735594 GGGTATTTTA
* * * * **
48735604 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
* * * *
48735658 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTGAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
* * * * * * *
48735712 ATAATTCTGTAAATCGAGGGTAAAACGATAATTATGTAAATCGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
* * *
48735766 GTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
* * * * * * *
48735820 ATAATTATGTAAATCGGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGA-GGGTAAAACG
* * * * *
48735874 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAA-CTAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATC-GAGGGTAAAACG
*
48735928 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
* *** * *
48735982 GTAATTCTATAAATCGAGGGTACTTTGGTAATTTTACAAGTCGAGGGTA
1 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTA
48736031 TTTCAATAAT
Statistics
Matches: 320, Mismatches: 49, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.00
54 317 0.99
55 2 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACG
Found at i:48736030 original size:81 final size:81
Alignment explanation
Indices: 48735604--48736003 Score: 489
Period size: 81 Copynumber: 4.9 Consensus size: 81
48735594 GGGTATTTTA
* ** * * * **
48735604 GTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
48735669 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * * * *
48735685 GTAATTCTGTAAATCGAGGGTGAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
*
48735750 AATCGGGGGTAAAATG
66 AATCGAGGGTAAAATG
* * * *
48735766 GTAATTCTGTAAATCGAGGGTGAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTATGTA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
* *
48735831 AATCGGGGGTAAAACG
66 AATCGAGGGTAAAATG
* * ** *
48735847 GTAATTATGTAAAT-TAGGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGA-GGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
* *
48735911 AAA-CTAAGGGTAAAACG
65 AAATC-GAGGGTAAAATG
* * *
48735928 GTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
48735993 AATCGAGGGTA
66 AATCGAGGGTA
48736004 CTTTGGTAAT
Statistics
Matches: 281, Mismatches: 34, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
80 2 0.01
81 277 0.99
82 2 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATA
AATCGAGGGTAAAATG
Found at i:48736128 original size:53 final size:53
Alignment explanation
Indices: 48736052--48736201 Score: 207
Period size: 53 Copynumber: 2.8 Consensus size: 53
48736042 TTACAGGTCG
* * *
48736052 AGGGTATTTCAGTAATTTCACAAATTAGGGGTATTTTGGTAATTTTACAAA-CT
1 AGGGTATTT-AGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
* *
48736105 AGGGTATTTTGATAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACCA
1 AGGGTATTTAG-TAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
48736159 AGGGTATTTAGTAATTTTACAAAGC-A-GGGTATTTTGGTAATTT
1 AGGGTATTTAGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTT
48736202 GTAAACCAAA
Statistics
Matches: 88, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
52 18 0.20
53 58 0.66
54 12 0.14
ACGTcount: A:0.32, C:0.07, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCA
Found at i:48736147 original size:27 final size:26
Alignment explanation
Indices: 48735953--48736201 Score: 187
Period size: 27 Copynumber: 9.3 Consensus size: 26
48735943 GAGGGTAAAA
* ***
48735953 TGGTAATTTTACAAATCGAGGGTAAAA
1 TGGTAATTTTACAAA-CTAGGGTATTT
* * * * *
48735980 CGGTAATTCTATAAATCGAGGGTACTT
1 TGGTAATTTTACAAA-CTAGGGTATTT
* *
48736007 TGGTAATTTTACAAGTCGAGGGTATTT
1 TGGTAATTTTACAA-ACTAGGGTATTT
*** ** *
48736034 CAATAATTTTACAGGTCGAGGGTATTT
1 TGGTAATTTTACA-AACTAGGGTATTT
** * *
48736061 CAGTAATTTCACAAATTAGGGGTATTT
1 TGGTAATTTTACAAACTA-GGGTATTT
48736088 TGGTAATTTTACAAACTAGGGTATTT
1 TGGTAATTTTACAAACTAGGGTATTT
*
48736114 TGATAATTTTACAAACTAGGGGTATTT
1 TGGTAATTTTACAAACTA-GGGTATTT
* *
48736141 TGGTAATTTTATAAACCAAGGGTA-TT
1 TGGTAATTTTACAAA-CTAGGGTATTT
*
48736167 TAGTAATTTTACAAAGC-AGGGTATTT
1 TGGTAATTTTACAAA-CTAGGGTATTT
48736193 TGGTAATTT
1 TGGTAATTT
48736202 GTAAACCAAA
Statistics
Matches: 183, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
25 6 0.03
26 52 0.28
27 123 0.67
28 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (26 bp):
TGGTAATTTTACAAACTAGGGTATTT
Found at i:48736215 original size:25 final size:24
Alignment explanation
Indices: 48736081--48736218 Score: 89
Period size: 26 Copynumber: 5.3 Consensus size: 24
48736071 ACAAATTAGG
* *
48736081 GGTATTTTGGTAATTTTACAAACTAG
1 GGTATTTTGGTAATTTT--AAACCAA
* * *
48736107 GGTATTTTGATAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTT--AAACCA-A
48736134 GGTATTTTGGTAATTTTATAAACCAA
1 GGTATTTTGGTAA-TTT-TAAACCAA
* * *
48736160 GGGTA-TTTAGTAATTTTACAAAGCAG
1 -GGTATTTTGGTAATTTT--AAACCAA
48736186 GGTATTTTGGTAATTTGTAAACCAA
1 GGTATTTTGGTAATTT-TAAACCAA
*
48736211 AGTATTTT
1 GGTATTTT
48736219 AAGTAGGGAT
Statistics
Matches: 93, Mismatches: 11, Indels: 17
0.77 0.09 0.14
Matches are distributed among these distances:
24 1 0.01
25 19 0.20
26 46 0.49
27 23 0.25
28 3 0.03
29 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (24 bp):
GGTATTTTGGTAATTTTAAACCAA
Found at i:48746866 original size:24 final size:25
Alignment explanation
Indices: 48746801--48746869 Score: 70
Period size: 24 Copynumber: 2.8 Consensus size: 25
48746791 TCATGTACAT
*
48746801 GTATGCTCAT-ACAAGCTTTGAATAG
1 GTATGCTC-TCACAAGCTGTGAATAG
* * * *
48746826 GTATGCTCACTCGAGCTGT-AATCG
1 GTATGCTCTCACAAGCTGTGAATAG
48746850 GTATGCTCTCACAAGCTGTG
1 GTATGCTCTCACAAGCTGTG
48746870 GGTCGAAATG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
24 20 0.59
25 14 0.41
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (25 bp):
GTATGCTCTCACAAGCTGTGAATAG
Found at i:48752851 original size:24 final size:24
Alignment explanation
Indices: 48752819--48752911 Score: 186
Period size: 24 Copynumber: 3.9 Consensus size: 24
48752809 TAGTGTAGCG
48752819 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48752843 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48752867 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48752891 AATCGCACACATAGTGCCATA
1 AATCGCACACATAGTGCCATA
48752912 TATTTCCAGC
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.20
Consensus pattern (24 bp):
AATCGCACACATAGTGCCATAGTA
Found at i:48760057 original size:24 final size:24
Alignment explanation
Indices: 48760025--48760141 Score: 234
Period size: 24 Copynumber: 4.9 Consensus size: 24
48760015 TAGTGTAGCG
48760025 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48760049 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48760073 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48760097 AATCGCACACATAGTGCCATAGTA
1 AATCGCACACATAGTGCCATAGTA
48760121 AATCGCACACATAGTGCCATA
1 AATCGCACACATAGTGCCATA
48760142 TATTTCCAGC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 93 1.00
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.21
Consensus pattern (24 bp):
AATCGCACACATAGTGCCATAGTA
Found at i:48763013 original size:14 final size:14
Alignment explanation
Indices: 48762994--48763020 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48762984 AGACACGGTC
48762994 GTGTGGTGGTGTGA
1 GTGTGGTGGTGTGA
48763008 GTGTGGTGGTGTG
1 GTGTGGTGGTGTG
48763021 GGCCAAACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.00, G:0.59, T:0.37
Consensus pattern (14 bp):
GTGTGGTGGTGTGA
Found at i:48765828 original size:42 final size:43
Alignment explanation
Indices: 48765731--48765831 Score: 105
Period size: 42 Copynumber: 2.4 Consensus size: 43
48765721 GCCAACGTCT
* ** * * *
48765731 CAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTATCC
1 CAGACATGGTCTTACGCGAAATCAAATATCGATGACAATATCC
* * * *
48765774 CAAACAGGGTCTTACGCGAAATCAAATA-CGATGACAATGTTC
1 CAGACATGGTCTTACGCGAAATCAAATATCGATGACAATATCC
48765816 CAGACATGGTCTTACG
1 CAGACATGGTCTTACG
48765832 AGTAAATCGT
Statistics
Matches: 46, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
42 24 0.52
43 22 0.48
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (43 bp):
CAGACATGGTCTTACGCGAAATCAAATATCGATGACAATATCC
Found at i:48765839 original size:43 final size:44
Alignment explanation
Indices: 48765731--48765839 Score: 109
Period size: 43 Copynumber: 2.5 Consensus size: 44
48765721 GCCAACGTCT
* * *
48765731 CAGACGTGGTCTTAC-ATGT-AATCAAATATCGATGCCACTATCC
1 CAGACATGGTCTTACGA-GTAAATCAAATATCGATGACAATATCC
* * * * *
48765774 CAAACAGGGTCTTACGCG-AAATCAAATA-CGATGACAATGTTC
1 CAGACATGGTCTTACGAGTAAATCAAATATCGATGACAATATCC
48765816 CAGACATGGTCTTACGAGTAAATC
1 CAGACATGGTCTTACGAGTAAATC
48765840 GTAAGTTGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
42 25 0.48
43 27 0.52
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (44 bp):
CAGACATGGTCTTACGAGTAAATCAAATATCGATGACAATATCC
Found at i:48769479 original size:40 final size:40
Alignment explanation
Indices: 48769424--48769598 Score: 323
Period size: 40 Copynumber: 4.4 Consensus size: 40
48769414 CGGATGTAAC
48769424 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
48769464 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
48769504 AACCTGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
48769544 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
48769584 AACCCGCACGAATGC
1 AACCAGCACGAATGC
48769599 TATGCACATA
Statistics
Matches: 133, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:48777991 original size:40 final size:40
Alignment explanation
Indices: 48777922--48778056 Score: 216
Period size: 40 Copynumber: 3.4 Consensus size: 40
48777912 CGGATGTAAC
* * **
48777922 AACCAGCATGAATGCCTTCGGGACTTAACCAAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
48777962 AACCCGCACGAATTCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
48778002 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
48778042 AACCCGCACAAATGC
1 AACCCGCACGAATGC
48778057 TATGCACATA
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 88 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:48778573 original size:45 final size:45
Alignment explanation
Indices: 48778522--48778611 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
48778512 TTATTATAAT
48778522 TTATCATTTCCACAATTTATTTTAAACTTACAAATTTCATAAATA
1 TTATCATTTCCACAATTTATTTTAAACTTACAAATTTCATAAATA
48778567 TTATCATTTCCACAATTTATTTTAAACTTACAAATTTCATAAATA
1 TTATCATTTCCACAATTTATTTTAAACTTACAAATTTCATAAATA
48778612 ATACAATTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (45 bp):
TTATCATTTCCACAATTTATTTTAAACTTACAAATTTCATAAATA
Found at i:48789389 original size:19 final size:19
Alignment explanation
Indices: 48789360--48789397 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
48789350 CATAATGCTA
48789360 ATTTGGTATCAA-ATTTTT
1 ATTTGGTATCAATATTTTT
48789378 ATTTGAGTATCAATATTTTT
1 ATTTG-GTATCAATATTTTT
48789398 CATAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (19 bp):
ATTTGGTATCAATATTTTT
Found at i:48790546 original size:14 final size:14
Alignment explanation
Indices: 48790521--48790560 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
48790511 ATTTAATAAA
* *
48790521 TAAAAATAAAAATCC
1 TAAAACTAAAAGT-C
48790536 TAAAACTAAAAGTC
1 TAAAACTAAAAGTC
48790550 TAAAACTAAAA
1 TAAAACTAAAA
48790561 CACACGACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.65, C:0.12, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAAACTAAAAGTC
Done.