Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 168 of 328
Found at i:49382620 original size:172 final size:172
Alignment explanation
Indices: 49382334--49382671 Score: 622
Period size: 172 Copynumber: 2.0 Consensus size: 172
49382324 GTACAAGTCA
* * *
49382334 GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTGTGACTTAGCTGTGTTGCATAAGTC
1 GTATACCCCCTAATTGGCACACGACCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
*
49382399 AGTATACCTTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
66 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
*
49382464 CGAAGGGTACACGGGCTAGACACACGGGTGTGTCGTTGAAGG
131 CGAAGGGTACACGGGCTAGACACACGGGTGTATCGTTGAAGG
49382506 GTATACCCCCTAATTGGCACACGACCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
1 GTATACCCCCTAATTGGCACACGACCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
*
49382571 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGGCTTGGCACACGGACGTGTGTGGCCACTT
66 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
49382636 CGAAGGGTACACGGGCTAGACACACGGGTGTATCGT
131 CGAAGGGTACACGGGCTAGACACACGGGTGTATCGT
49382672 CGACTGTGTG
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 160 1.00
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (172 bp):
GTATACCCCCTAATTGGCACACGACCTAGCACACGGGCTTGTGACTTAGCCGTATTGCATAAGTC
AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
CGAAGGGTACACGGGCTAGACACACGGGTGTATCGTTGAAGG
Found at i:49399244 original size:13 final size:13
Alignment explanation
Indices: 49399226--49399250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49399216 GAGAGGAGAC
49399226 ACGGTCGTGTGAT
1 ACGGTCGTGTGAT
49399239 ACGGTCGTGTGA
1 ACGGTCGTGTGA
49399251 AAATAGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (13 bp):
ACGGTCGTGTGAT
Found at i:49403968 original size:14 final size:15
Alignment explanation
Indices: 49403949--49403978 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
49403939 ATATTTGACT
49403949 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
49403963 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
49403978 T
1 T
49403979 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:49405776 original size:46 final size:46
Alignment explanation
Indices: 49405680--49405803 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
49405670 AACCCGCCCC
* * *
49405680 TAAGTGAACT-GGACTCAACTCAACGAGCT-GGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
49405724 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
49405770 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49405804 TGCTCAACCA
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
44 10 0.14
45 18 0.24
46 46 0.62
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:49412794 original size:93 final size:93
Alignment explanation
Indices: 49412682--49412852 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
49412672 GCCCCTAAGT
* *
49412682 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
49412747 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
49412775 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
49412840 CGAGTTCGGATGC
66 CGAGTTCGGATGC
49412853 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49412849 original size:46 final size:46
Alignment explanation
Indices: 49412677--49412849 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
49412667 AACCCGCCCC
* * *
49412677 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
49412723 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
49412771 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
49412816 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49412850 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 8, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:49415768 original size:29 final size:28
Alignment explanation
Indices: 49415711--49415834 Score: 131
Period size: 29 Copynumber: 4.4 Consensus size: 28
49415701 GTGAGCATGA
* * *
49415711 ATATAAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
*
49415739 ATATAAATGTGATTTGGGCCTAATGAGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
49415768 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
49415797 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* *
49415825 AGATACATGT
1 ATATAAATGT
49415835 ATGTGAAATT
Statistics
Matches: 79, Mismatches: 16, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
28 33 0.42
29 46 0.58
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:49418614 original size:17 final size:17
Alignment explanation
Indices: 49418592--49418626 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
49418582 ATACGTATGC
49418592 GGTGTGGTCCTGCACAG
1 GGTGTGGTCCTGCACAG
*
49418609 GGTGTGGTCCTGTACAG
1 GGTGTGGTCCTGCACAG
49418626 G
1 G
49418627 AAGTTTAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.20, G:0.43, T:0.26
Consensus pattern (17 bp):
GGTGTGGTCCTGCACAG
Found at i:49434656 original size:34 final size:33
Alignment explanation
Indices: 49434606--49434678 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
49434596 TTAGTCGCAA
*
49434606 TATCAGTATGGACCTTAGCCTAATACAGTAGCAG
1 TATCAGTATGGACCTTAGCCCAATACAGTA-CAG
* * *
49434640 TATCAGTGTGGGCCTTAGCCCAATTCAGTACAG
1 TATCAGTATGGACCTTAGCCCAATACAGTACAG
49434673 TATCAG
1 TATCAG
49434679 GAATGCATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 9 0.26
34 26 0.74
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (33 bp):
TATCAGTATGGACCTTAGCCCAATACAGTACAG
Found at i:49440576 original size:79 final size:80
Alignment explanation
Indices: 49440433--49440640 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
49440423 ACCTTCGGAG
* * ** * * * *
49440433 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
49440497 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
49440512 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
49440574 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
49440591 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
49440641 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:49440585 original size:40 final size:40
Alignment explanation
Indices: 49440533--49440640 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
49440523 TATCACGATT
** *
49440533 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
49440573 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
49440613 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
49440641 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:49447843 original size:71 final size:71
Alignment explanation
Indices: 49447759--49447922 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49447749 CGATTTGTCT
49447759 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49447824 CTTTCA
66 CTTTCA
49447830 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49447895 CTTTCA
66 CTTTCA
49447901 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49447923 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49447960 original size:71 final size:70
Alignment explanation
Indices: 49447759--49447956 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49447749 CGATTTGTCT
* * * *
49447759 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49447824 CTTTCA
65 CTTTCA
* * * *
49447830 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49447895 CTTTCA
65 CTTTCA
* *
49447901 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49447957 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49454943 original size:71 final size:71
Alignment explanation
Indices: 49454859--49455022 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49454849 CGATTTGTCT
49454859 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49454924 CTTTCA
66 CTTTCA
49454930 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49454995 CTTTCA
66 CTTTCA
49455001 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49455023 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49455060 original size:71 final size:70
Alignment explanation
Indices: 49454859--49455056 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49454849 CGATTTGTCT
* * * *
49454859 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49454924 CTTTCA
65 CTTTCA
* * * *
49454930 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49454995 CTTTCA
65 CTTTCA
* *
49455001 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49455057 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49456505 original size:2 final size:2
Alignment explanation
Indices: 49456498--49456539 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
49456488 TTCGGAAGTG
*
49456498 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
49456540 CATAAGTATG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:49457057 original size:28 final size:28
Alignment explanation
Indices: 49456992--49457090 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
49456982 CATGAGATTG
* * *
49456992 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
49457021 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
49457049 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
49457077 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
49457091 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:49459301 original size:15 final size:15
Alignment explanation
Indices: 49459258--49459301 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 15
49459248 ATTTATGCAT
49459258 ATGA-TGAAGTTTTC
1 ATGATTGAAGTTTTC
49459272 ATGGATGTGGAAGTTTTC
1 AT-GAT-T-GAAGTTTTC
49459290 ATGATTGAAGTT
1 ATGATTGAAGTT
49459302 GATAAGTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 2 0.08
15 8 0.31
16 1 0.04
17 4 0.15
18 11 0.42
ACGTcount: A:0.27, C:0.05, G:0.27, T:0.41
Consensus pattern (15 bp):
ATGATTGAAGTTTTC
Found at i:49463577 original size:45 final size:45
Alignment explanation
Indices: 49463518--49463608 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
49463508 CCAAAACATG
*
49463518 TGTCACATACATCATGAACTCGGACCACAACTCAATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
* * * *
49463563 TGTCATATATATCATGAACTCAGACCACAATTCGATGAGTTCAGA
1 TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
49463608 T
1 T
49463609 CCCATAGTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.26
Consensus pattern (45 bp):
TGTCACATACATCATGAACTCAGACCACAACTCAATGAGTTCAGA
Found at i:49474460 original size:93 final size:93
Alignment explanation
Indices: 49474348--49474519 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49474338 GCCCATAAGT
* *
49474348 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49474413 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
49474441 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49474506 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
49474520 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49474515 original size:46 final size:46
Alignment explanation
Indices: 49474340--49474515 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49474330 TGTAACCCGC
* * *
49474340 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
49474386 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
49474436 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
49474479 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49474516 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:49476935 original size:29 final size:29
Alignment explanation
Indices: 49476896--49476983 Score: 97
Period size: 29 Copynumber: 3.0 Consensus size: 29
49476886 CAAAGATAAC
*
49476896 AAGAAAACCGAATAAAGAAATCCAAGATA
1 AAGAAACCCGAATAAAGAAATCCAAGATA
*
49476925 GAGAAACCCGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGAATAAAGAAATCCAAG-ATA
* * * *
49476954 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGA-AACCCGAATAAAGAAATCCAAGATA
49476984 CGATACTATG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
28 2 0.04
29 27 0.55
30 18 0.37
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (29 bp):
AAGAAACCCGAATAAAGAAATCCAAGATA
Found at i:49476954 original size:15 final size:15
Alignment explanation
Indices: 49476896--49476974 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
49476886 CAAAGATAAC
*
49476896 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
49476910 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
49476925 GAGAAA-CCCGAATA
1 AAGAAATCCAGAATA
49476939 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
49476954 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
49476969 AAGAAA
1 AAGAAA
49476975 CCCAAGATAC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
14 19 0.36
15 34 0.64
ACGTcount: A:0.58, C:0.14, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:49476983 original size:15 final size:15
Alignment explanation
Indices: 49476907--49476983 Score: 77
Period size: 15 Copynumber: 5.2 Consensus size: 15
49476897 AGAAAACCGA
49476907 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* * *
49476922 ATAGAGAAACCCGA-
1 ATAAAGAAATCCAAG
49476936 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
49476950 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
49476966 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
49476981 ATA
1 ATA
49476984 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
13 1 0.02
14 10 0.20
15 37 0.76
16 1 0.02
ACGTcount: A:0.56, C:0.16, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:49480044 original size:93 final size:93
Alignment explanation
Indices: 49479932--49480103 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49479922 GCCCATAAGT
* *
49479932 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49479997 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
49480025 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
49480090 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
49480104 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:49480099 original size:46 final size:46
Alignment explanation
Indices: 49479924--49480099 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49479914 TGTAACCCGC
* * *
49479924 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
49479970 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
49480020 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
49480063 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
49480100 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:49483845 original size:18 final size:19
Alignment explanation
Indices: 49483812--49483847 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
49483802 TATTATAATC
49483812 TATATGATAATAATATTTA
1 TATATGATAATAATATTTA
*
49483831 TATATG-TATTAATATTT
1 TATATGATAATAATATTT
49483848 TTAGTAATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (19 bp):
TATATGATAATAATATTTA
Found at i:49492490 original size:42 final size:41
Alignment explanation
Indices: 49492437--49492550 Score: 106
Period size: 43 Copynumber: 2.7 Consensus size: 41
49492427 CAATATTGAT
* * *
49492437 GCCTCTGTCCCAGACAGGGTCTTACACGAAA-TCAGATACAAT
1 GCCTGTGTCCCAGACACGGTCTTACACGAAACTCA-AT-CAAG
* * * *
49492479 GCC-GATGTCCCAAACATGGTCTTATACGTAAATCTCAATCGAG
1 GCCTG-TGTCCCAGACACGGTCTTACACG-AAA-CTCAATCAAG
49492522 GCCTGTGTCCCAGACACGGTCTTACACGA
1 GCCTGTGTCCCAGACACGGTCTTACACGA
49492551 TATCTCAGAT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
42 24 0.41
43 28 0.48
44 3 0.05
45 3 0.05
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (41 bp):
GCCTGTGTCCCAGACACGGTCTTACACGAAACTCAATCAAG
Found at i:49498279 original size:40 final size:39
Alignment explanation
Indices: 49498129--49498281 Score: 243
Period size: 39 Copynumber: 3.9 Consensus size: 39
49498119 AAATGTTCGA
* *
49498129 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
49498168 GTGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
*
49498207 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
* *
49498246 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GTGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
49498282 GGTTACCATA
Statistics
Matches: 105, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 88 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
Found at i:49498297 original size:40 final size:39
Alignment explanation
Indices: 49498130--49498312 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
49498120 AATGTTCGAG
* * *
49498130 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
49498169 TGACATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
49498208 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
49498247 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
49498287 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
49498313 GTTTGAACGA
Statistics
Matches: 128, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 87 0.68
40 41 0.32
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:49498348 original size:79 final size:79
Alignment explanation
Indices: 49498136--49498350 Score: 177
Period size: 78 Copynumber: 2.7 Consensus size: 79
49498126 CGAGTGATAT
** * * * * * *
49498136 CCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGACATCCGGGCT-AA-GCCCGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCC-GGATAAACTCCCGAAGGCAATTG
** *
49498199 TGCGAGTTATGATAT
65 TGCGAGTTACCATAA
** * * * * *
49498214 CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
*
49498279 GCGGGTTACCATAA
66 GCGAGTTACCATAA
* **
49498293 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCCGGATAAACT-CCGAAGG
1 CCGGGCTAAG-CCCGAAGGCAATTGAACGAGTAG-TGATATCCGGATAAACTCCCGAAGG
49498351 TATGTGATTC
Statistics
Matches: 114, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.03
78 40 0.35
79 40 0.35
80 30 0.26
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCAATTGAACGAGTAGTGATATCCGGATAAACTCCCGAAGGCAATTGT
GCGAGTTACCATAA
Found at i:49506213 original size:27 final size:28
Alignment explanation
Indices: 49506157--49506226 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
49506147 AAACTTGTAC
49506157 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
49506185 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
49506212 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49506227 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:49506237 original size:27 final size:27
Alignment explanation
Indices: 49506157--49506238 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
49506147 AAACTTGTAC
* *
49506157 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
49506185 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
49506212 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
49506239 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:49512787 original size:39 final size:38
Alignment explanation
Indices: 49512732--49512878 Score: 158
Period size: 39 Copynumber: 3.8 Consensus size: 38
49512722 GGATATAACG
* * *
49512732 ACTCGCTCAAA-GCCTTCGGGACATAGCCCGGTTTAAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGT
* *
49512769 AGCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTGGT
1 A-CTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGT
49512808 AACTCGCACAAATGCCTTC-GGA-TTA-CCCGGATTTAGT
1 -ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTTAGT
* *
49512845 CACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 -AC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
49512879 ATACATTCGA
Statistics
Matches: 93, Mismatches: 9, Indels: 12
0.82 0.08 0.11
Matches are distributed among these distances:
36 5 0.05
37 11 0.12
38 26 0.28
39 42 0.45
40 4 0.04
41 5 0.05
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.24
Consensus pattern (38 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTTAGT
Found at i:49520735 original size:40 final size:40
Alignment explanation
Indices: 49520679--49520779 Score: 132
Period size: 40 Copynumber: 2.5 Consensus size: 40
49520669 GGATATAGCG
* *
49520679 ACTCGCTCAAA-GCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGTTATAATA
* * * **
49520718 GCTCGCACAAATGCCTTCGGGACTTAACCCGGTTTTGGTA
1 ACTCGCACAAATGCCTTCGGGACATAACCCGGTTATAATA
49520758 ACTCGCACAAATGCCTTCGGGA
1 ACTCGCACAAATGCCTTCGGGA
49520780 TTACCCGGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 9 0.17
40 44 0.83
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACATAACCCGGTTATAATA
Found at i:49520787 original size:78 final size:79
Alignment explanation
Indices: 49520679--49520827 Score: 180
Period size: 78 Copynumber: 1.9 Consensus size: 79
49520669 GGATATAGCG
* * * *
49520679 ACTCGCTCAAAGCCTTCGGGACATAGCCCGGTTATAAT-AGC-TCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAAGCCTTCGGGACATAGCCCGGAT-TAATCA-CTTAGCACAAAAGCCTTCGGGACT
49520742 TAACCCGGTTTTGGTA
64 TAACCCGGTTTTGGTA
* *
49520758 ACTCGCACAAATGCCTTCGGGA-TTA-CCCGGATTAGTCACTTAGCACAAAAGCCTTCGGGACTT
1 ACTCGCACAAA-GCCTTCGGGACATAGCCCGGATTAATCACTTAGCACAAAAGCCTTCGGGACTT
*
49520821 AGCCCGG
65 AACCCGG
49520828 ATACCATTCG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
77 4 0.07
78 34 0.57
79 12 0.20
80 10 0.17
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (79 bp):
ACTCGCACAAAGCCTTCGGGACATAGCCCGGATTAATCACTTAGCACAAAAGCCTTCGGGACTTA
ACCCGGTTTTGGTA
Found at i:49520804 original size:38 final size:38
Alignment explanation
Indices: 49520686--49520829 Score: 130
Period size: 40 Copynumber: 3.7 Consensus size: 38
49520676 GCGACTCGCT
* * * * *
49520686 CAAA-GCCTTCGGGACATAGCCCGGTTATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTA-CCCGGAT-TAGTAACTAGCA
* * *
49520725 CAAATGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCA
1 CAAATGCCTTCGGGACTT-ACCCGG-ATTAGTAACTAGCA
*
49520765 CAAATGCCTTCGGGA-TTACCCGGATTAGTCACTTAGCA
1 CAAATGCCTTCGGGACTTACCCGGATTAGTAAC-TAGCA
*
49520803 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTA-CCCGGAT
49520830 ACCATTCGAA
Statistics
Matches: 90, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
37 6 0.07
38 24 0.27
39 9 0.10
40 48 0.53
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (38 bp):
CAAATGCCTTCGGGACTTACCCGGATTAGTAACTAGCA
Found at i:49529707 original size:39 final size:39
Alignment explanation
Indices: 49529664--49529789 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
49529654 AGACTTTAGC
* * * *
49529664 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
*
49529703 CCGGATATAATTCCAGCACACAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
49529742 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
49529781 CCGGATATA
1 CCGGATATA
49529790 CATCACTGAA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:49532216 original size:20 final size:20
Alignment explanation
Indices: 49532191--49532238 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
49532181 CCGGTAAGGG
*
49532191 ACACGGGTGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
49532211 ACACGGGCGTGTCCCAAAGC
1 ACACGGGCGTGTCCCAAAGC
49532231 ACACGGGC
1 ACACGGGC
49532239 ATGTACATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.31, T:0.10
Consensus pattern (20 bp):
ACACGGGCGTGTCCCAAAGC
Found at i:49535423 original size:24 final size:24
Alignment explanation
Indices: 49535396--49535626 Score: 417
Period size: 24 Copynumber: 9.6 Consensus size: 24
49535386 CTTATTATGT
* * *
49535396 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
49535420 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49535444 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49535468 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49535492 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49535516 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
49535540 TCGCACACATAGTTCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49535564 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
49535588 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
49535612 TCGCACACATAGTGC
1 TCGCACACATAGTGC
49535627 ATTTGAGATA
Statistics
Matches: 201, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 201 1.00
ACGTcount: A:0.37, C:0.26, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:49543351 original size:24 final size:24
Alignment explanation
Indices: 49543324--49543578 Score: 465
Period size: 24 Copynumber: 10.6 Consensus size: 24
49543314 CTTATTATGT
* * *
49543324 TCGCACACATAGAGCTATAGCAAA
1 TCGCACACATAGTGCCATAGTAAA
*
49543348 TCGCACACATAGTGCTATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543372 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543396 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543420 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543444 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543468 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543492 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
49543516 TCGCACACATAGTGCCATAGTAAA
1 TCGCACACATAGTGCCATAGTAAA
*
49543540 TCGCACACATAGTGCCATAGTGAA
1 TCGCACACATAGTGCCATAGTAAA
49543564 TCGCACACATAGTGC
1 TCGCACACATAGTGC
49543579 ATTTGAGATA
Statistics
Matches: 227, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 227 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCCATAGTAAA
Found at i:49547329 original size:49 final size:50
Alignment explanation
Indices: 49547234--49547474 Score: 256
Period size: 49 Copynumber: 4.9 Consensus size: 50
49547224 ATCTATTATG
* * * **
49547234 AGGTCAC-TATGTAGTACTAAGTGCAGGCTACTACGTGTTCTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * * *
49547283 -GGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-TT
* * * * * * **
49547333 CGATCACGTGTGTAGTACTAAGTGCAGGTTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
49547383 AGGTCA-AGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
1 AGGTCACA-TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
* * *
49547433 -GGTCACAGGTTTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
49547475 AATAGCTTTG
Statistics
Matches: 157, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
48 5 0.03
49 70 0.45
50 46 0.29
51 36 0.23
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT
Found at i:49547424 original size:101 final size:98
Alignment explanation
Indices: 49547243--49547465 Score: 281
Period size: 101 Copynumber: 2.2 Consensus size: 98
49547233 GAGGTCACTA
* *
49547243 TGTAGTACTAAGTGCAGGCTACTACGTGTTCTGGATAATTGGTCGCATGTGTAGTACTAAGTGCA
1 TGTAGTACTAAGTGCAGGCTACTACGTGTTCTAGATAATTGGTCGAATGTGTAGTACTAAGTGCA
* *
49547308 GGCTATTATGCGTACCCGATAACTTCGATCAC-GTG
66 GGCTACTATGCGTACCAGATAA-TT-GATCACAG-G
* **
49547343 TGTAGTACTAAGTGCAGGTTACTACGTGTATC-AGATGGTTAGGTC-AAGTGTGTAGTACTAAGT
1 TGTAGTACTAAGTGCAGGCTACTACGTGT-TCTAGATAATT-GGTCGAA-TGTGTAGTACTAAGT
* *
49547406 GCAGGCTACTATGTGTACCAGATAATTGGTCACAGG
63 GCAGGCTACTATGCGTACCAGATAATTGATCACAGG
*
49547442 TTTAGTACTAAGTGCAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
49547466 TGCGTACCAA
Statistics
Matches: 108, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
99 28 0.26
100 37 0.34
101 43 0.40
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (98 bp):
TGTAGTACTAAGTGCAGGCTACTACGTGTTCTAGATAATTGGTCGAATGTGTAGTACTAAGTGCA
GGCTACTATGCGTACCAGATAATTGATCACAGG
Found at i:49557359 original size:31 final size:31
Alignment explanation
Indices: 49557293--49557364 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
49557283 GGCCAAGTTG
**
49557293 GGCATGTGGGCCCAAACGGGTAGTCCACACA
1 GGCATGTGGGCCCAAACGGAAAGTCCACACA
* * **
49557324 GGCATGTGGGCCCACACGGAAAGTTCACATT
1 GGCATGTGGGCCCAAACGGAAAGTCCACACA
49557355 GGCATGTGGG
1 GGCATGTGGG
49557365 TTTTTTGGCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.24, C:0.25, G:0.35, T:0.17
Consensus pattern (31 bp):
GGCATGTGGGCCCAAACGGAAAGTCCACACA
Found at i:49573694 original size:49 final size:47
Alignment explanation
Indices: 49573583--49573700 Score: 130
Period size: 47 Copynumber: 2.5 Consensus size: 47
49573573 AATGTCGATG
* * * **
49573583 CCATGTCCCAGACATGGACTTACACTGCCTCATGTCTAAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGACTCATGTCTAAAGCCGACA
* * *
49573630 CCATGTCCCAAACATGGTCTTACACTGACT-ATCGTCATTGAGGCCGACA
1 CCATGTCCCAGACATGGTCTTACACTGACTCAT-GTC--TAAAGCCGACA
49573679 CCATGTCCCAGACATGGTCTTA
1 CCATGTCCCAGACATGGTCTTA
49573701 AACTAGCTCT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 2 0.03
47 30 0.51
49 27 0.46
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACTGACTCATGTCTAAAGCCGACA
Found at i:49575141 original size:17 final size:16
Alignment explanation
Indices: 49575112--49575145 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
49575102 GCACTAAGAT
*
49575112 TAACATGCGATGACAA
1 TAACATGCAATGACAA
49575128 TAACAATGCAATGACAA
1 TAAC-ATGCAATGACAA
49575145 T
1 T
49575146 GTTCACTAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.21
Consensus pattern (16 bp):
TAACATGCAATGACAA
Found at i:49576846 original size:46 final size:46
Alignment explanation
Indices: 49576793--49576968 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49576783 TATTTGGGCA
49576793 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
49576839 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
49576886 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
49576932 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49576969 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:49576948 original size:93 final size:93
Alignment explanation
Indices: 49576789--49576960 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49576779 AGGATATTTG
* *
49576789 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49576854 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
49576882 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49576947 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49576961 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49579958 original size:15 final size:15
Alignment explanation
Indices: 49579919--49579998 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
49579909 GTATCTTGGG
*
49579919 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
49579934 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
49579949 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
49579964 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
49579979 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
49579993 TTTCTT
1 TTTCTT
49579999 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:49579988 original size:30 final size:30
Alignment explanation
Indices: 49579910--49579997 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
49579900 CATAGTATCG
* * *
49579910 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
49579940 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
49579970 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
49579998 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:49582412 original size:46 final size:46
Alignment explanation
Indices: 49582359--49582534 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
49582349 TATTTGGGCA
49582359 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
49582405 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
49582452 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
49582498 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49582535 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:49582514 original size:93 final size:93
Alignment explanation
Indices: 49582355--49582526 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
49582345 GGGATATTTG
* *
49582355 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49582420 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
49582448 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
49582513 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49582527 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:49584826 original size:39 final size:39
Alignment explanation
Indices: 49584724--49584833 Score: 134
Period size: 39 Copynumber: 2.8 Consensus size: 39
49584714 TGAAAATTAT
* * *
49584724 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGCTAA
* *
49584764 ATCCGGGCTAAGACCCGAA-GCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAGCTAA
49584803 ATCC-GGCTAAGACCCGAAGGCATTTGTGCAA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCAA
49584834 ATCGTGATAT
Statistics
Matches: 62, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
38 17 0.27
39 25 0.40
40 20 0.32
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGCTAA
Found at i:49584846 original size:39 final size:38
Alignment explanation
Indices: 49584678--49584863 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
49584668 TGAGAAATTG
* * *
49584678 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
49584718 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
49584755 AGTAGCTATATCCGGGCTAAGACCCGAA-GCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
49584794 AGTTGTTAAATCC-GGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
49584833 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
49584864 CTTGGTGCGG
Statistics
Matches: 117, Mismatches: 20, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
37 4 0.03
38 18 0.15
39 35 0.30
40 60 0.51
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:49586789 original size:50 final size:50
Alignment explanation
Indices: 49586710--49587043 Score: 328
Period size: 50 Copynumber: 6.8 Consensus size: 50
49586700 TGATGCTAGG
* * *
49586710 GAGATATAAGAGCTAGTGTAAGAACATGTCTAGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* *
49586760 GAGATATGAGAGCTAGTGTAAGACTATGTCTGGGCCATGGCATC-AGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCTC
* * *
49586810 GAGATATGAGAGCTAGTGTAAGATCATGTTTGGGACATGACATCGA-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * **
49586858 -TGATATGTG-TC-AGTGTAAGACCATGTCTCAGACATGGCATCGACACT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTC
* * *
49586905 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* ** * * *
49586955 GATATACAAGAGTTAGTGTAAGCCCATGTCTGCGACATGGCATCGA-C-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * * *
49587003 -ATGATGTGTGAGCCAGTGTAAAACCATGTTTGGGACATGGC
1 GA-GATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
49587044 GTCGGCACCT
Statistics
Matches: 231, Mismatches: 44, Indels: 20
0.78 0.15 0.07
Matches are distributed among these distances:
45 27 0.12
46 1 0.00
47 10 0.04
48 34 0.15
49 7 0.03
50 151 0.65
51 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
Found at i:49586992 original size:145 final size:145
Alignment explanation
Indices: 49586724--49587001 Score: 389
Period size: 145 Copynumber: 1.9 Consensus size: 145
49586714 TATAAGAGCT
* *
49586724 AGTGTAAGAACATGTCTAGGACATGGCATCGACCTCGAGATATGAGAGCTAGTGTAAGACTATGT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACCTCGAGAGATGAGAGCTAGTGTAAGACCATGT
* ** * * *
49586789 CTGGGCCATGGCATCAGCCTCGAGATATGAGAGCTAGTGTAAGATCATGTTTGGGACATGACATC
66 CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTCTGCGACATGACATC
49586854 GACTTGATATGTGTC
131 GACTTGATATGTGTC
* *
49586869 AGTGTAAGACCATGTCTCA-GACATGGCATCGACACT-GATAGATGAGAGCTAGTGTAAGACCAT
1 AGTGTAAGAACATGTCT-AGGACATGGCATCGAC-CTCGAGAGATGAGAGCTAGTGTAAGACCAT
* * * * *
49586932 GTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGCCCATGTCTGCGACATGGCA
64 GTCTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTCTGCGACATGACA
49586997 TCGAC
129 TCGAC
49587002 CATGATGTGT
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
145 113 0.97
146 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (145 bp):
AGTGTAAGAACATGTCTAGGACATGGCATCGACCTCGAGAGATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTCTGCGACATGACATC
GACTTGATATGTGTC
Found at i:49587049 original size:98 final size:100
Alignment explanation
Indices: 49586718--49587049 Score: 283
Period size: 95 Copynumber: 3.4 Consensus size: 100
49586708 GGGAGATATA
* * * * ** *
49586718 AGAGCTAGTGTAAGAA-CATGTCTAGGACATGGCATCGACCTCGAGATATGAGAGCTAGTGTAAG
1 AGAGCCAGTGTAA-AACCATGTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAG
* ** * * *
49586782 ACTATGTCTGGGCCATGGCATC-AGC-CTCGAGATATG
65 ACCATGTCTCAGACATGGCATCGA-CACT-GATAGATG
* * * * * * * * *
49586818 AGAGCTAGTGTAAGATCATGTTTGGGACATGACATC-GACTTGATAT----GTGTCAGTGTAAGA
1 AGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGA
49586878 CCATGTCTCAGACATGGCATCGACACTGATAGATG
66 CCATGTCTCAGACATGGCATCGACACTGATAGATG
* * *
49586913 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGC
1 AGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGA
49586978 CCATGTCTGC-GACATGGCATCGAC-CATGAT-G-TG
66 CCATGTCT-CAGACATGGCATCGACAC-TGATAGATG
* * *
49587011 TGAGCCAGTGTAAAACCATGTTTGGGACATGGCGTCGGC
1 AGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGC
49587050 ACCTTACCCT
Statistics
Matches: 192, Mismatches: 30, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
95 68 0.35
96 11 0.06
98 36 0.19
99 9 0.05
100 67 0.35
101 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (100 bp):
AGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGA
CCATGTCTCAGACATGGCATCGACACTGATAGATG
Found at i:49589128 original size:20 final size:20
Alignment explanation
Indices: 49589103--49589142 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
49589093 ATTATATGTT
49589103 TGAATTA-AATGTTTTATATG
1 TGAATTAGAAT-TTTTATATG
49589123 TGAATTATGAATTTTTATAT
1 TGAATTA-GAATTTTTATAT
49589143 AAATGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 8 0.44
22 3 0.17
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (20 bp):
TGAATTAGAATTTTTATATG
Found at i:49590635 original size:22 final size:22
Alignment explanation
Indices: 49590599--49590663 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
49590589 GCAAATACGT
49590599 TTGGCACACAA-CCATAATCAGG
1 TTGGCACA-AAGCCATAATCAGG
* * *
49590621 TTGGCATAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
49590643 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
49590664 AATAATTGGC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
21 3 0.09
22 28 0.85
23 2 0.06
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:49593697 original size:41 final size:41
Alignment explanation
Indices: 49593647--49593752 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
49593637 TAGAAGGTCA
* *
49593647 TCAAGCAACCATGCGATCCTTAATCGGTGGATCCACGATTG
1 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
*
49593688 TCAATCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
1 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
*
49593729 TCAAGCGACCATGCGATCCTCAAT
1 TCAAGCAACCATGCGATCCTCAAT
49593753 TTCTTCCTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (41 bp):
TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
Found at i:49594041 original size:27 final size:27
Alignment explanation
Indices: 49594010--49594064 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
49594000 TTGGTAAATC
49594010 TACAAACCAAAGGTATTTCAGTAATTT
1 TACAAACCAAAGGTATTTCAGTAATTT
* **
49594037 TACAAACCAATGGTATTTTTGTAATTT
1 TACAAACCAAAGGTATTTCAGTAATTT
49594064 T
1 T
49594065 TGAAAGTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (27 bp):
TACAAACCAAAGGTATTTCAGTAATTT
Found at i:49597488 original size:40 final size:40
Alignment explanation
Indices: 49597420--49597597 Score: 175
Period size: 40 Copynumber: 4.5 Consensus size: 40
49597410 CCAAGGCCAA
* * * *
49597420 CGGGACTTA-CCCGGATATCACGATTTGCACAAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
49597459 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * *
49597499 CGGGTCTTAGCCCGGATATAGCTACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * *
49597539 CGGGTCTTAACCCGGATAT-A-AA-TTTCAGCATAATTGTCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCA-CA-AA-TGCCTT
*
49597579 CGGGGCTTAGCCCGGATAT
1 CGGGTCTTAGCCCGGATAT
49597598 CATTCAATTT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 9 0.08
40 99 0.87
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:49604707 original size:40 final size:40
Alignment explanation
Indices: 49604648--49604816 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
49604638 CGGGACTTTA
* * *
49604648 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
49604688 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
49604728 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
49604768 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
49604808 CCCGGATAT
1 CCCGGATAT
49604817 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:49618334 original size:29 final size:29
Alignment explanation
Indices: 49618240--49618312 Score: 146
Period size: 29 Copynumber: 2.5 Consensus size: 29
49618230 GTGACGAGAT
49618240 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
49618269 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
49618298 TGGCACTAAGTGTGC
1 TGGCACTAAGTGTGC
49618313 GAGCTCGAAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:49618408 original size:2 final size:2
Alignment explanation
Indices: 49618403--49618439 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
49618393 GTGTGCGTAC
49618403 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
49618440 CTCCTATCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:49620866 original size:21 final size:21
Alignment explanation
Indices: 49620840--49620880 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
49620830 TGAGTTAACT
49620840 TGACCGAGTACTCAAAGTCAA
1 TGACCGAGTACTCAAAGTCAA
49620861 TGACCGAGTACTCAAAGTCA
1 TGACCGAGTACTCAAAGTCA
49620881 GTTATACCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.24, G:0.20, T:0.20
Consensus pattern (21 bp):
TGACCGAGTACTCAAAGTCAA
Found at i:49621646 original size:79 final size:81
Alignment explanation
Indices: 49621496--49621651 Score: 185
Period size: 79 Copynumber: 2.0 Consensus size: 81
49621486 CCTTGTCTCA
* * *
49621496 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTTATTTATTCAAACACACATGC
1 ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCC
49621561 AGCACATTATATTTCT
66 AGCACATTATATTTCT
* * * * *
49621577 ATGTCTATTTCAGATT-AATAA-TTTAGCCACATT-GGCTCTAA-TCATTTCTCCAAACATATAT
1 ATGTCTATTTCA-ATTCAAAAAGTATAGCCACATTCGGCTC-AATTCATTTATCCAAACACACAT
*
49621638 CCATCACATTATAT
64 CCAGCACATTATAT
49621652 ATATACATCT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
79 32 0.50
80 13 0.20
81 16 0.25
82 3 0.05
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
ATGTCTATTTCAATTCAAAAAGTATAGCCACATTCGGCTCAATTCATTTATCCAAACACACATCC
AGCACATTATATTTCT
Found at i:49627157 original size:55 final size:55
Alignment explanation
Indices: 49627023--49627159 Score: 141
Period size: 55 Copynumber: 2.5 Consensus size: 55
49627013 TACATAGGTC
* * *
49627023 CACGCCCGTGTTTGTTTTGACAGTGTCAACCATGGGTGGATGGCACGGGCGTGTCG
1 CACGCCCGTG-TTGTTTTGACAGTTTCAACCACGGGTAGATGGCACGGGCGTGTCG
*** ** ** *
49627079 CACGCCCGTGTTACATTCTCAGTTTCAACCACGATTTAGA-GGCACGGGCGTGTCT
1 CACGCCCGTGTTGTTTTGACAGTTTCAACCACG-GGTAGATGGCACGGGCGTGTCG
*
49627134 CACGCCCGTGTTGTTTTGGCAGTTTC
1 CACGCCCGTGTTGTTTTGACAGTTTC
49627160 GCCCATAGCC
Statistics
Matches: 64, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
55 51 0.80
56 13 0.20
ACGTcount: A:0.15, C:0.26, G:0.29, T:0.29
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGACAGTTTCAACCACGGGTAGATGGCACGGGCGTGTCG
Found at i:49629496 original size:40 final size:40
Alignment explanation
Indices: 49629426--49629633 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
49629416 CGGGATTTAA
** * *
49629426 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
49629465 CCGGATAT-GATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
49629505 CCGGATATAGTCGCTAGCACAAATGCCTTCGGGTTTTGGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
49629545 CCGGATATAGTAACTCGCATAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
49629585 CCGGATATAGTCACTTAACACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAGC
49629626 CCGGATAT
1 CCGGATAT
49629634 CATTCGAATA
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
39 15 0.11
40 95 0.69
41 28 0.20
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:49635071 original size:43 final size:43
Alignment explanation
Indices: 49635020--49635165 Score: 174
Period size: 43 Copynumber: 3.4 Consensus size: 43
49635010 TATCCCAGAT
* * *
49635020 TGGTCTTACATGTTATCACATATCGATGCCATTGTCCTAGATA
1 TGGTCTTACATGTAATCACATATCGATGCCAATGTCCTAGACA
*
49635063 -GCGTCTTACACGTAATCA-ATTAAT-GATGCCAATGTCCTAGACA
1 TG-GTCTTACATGTAATCACA-T-ATCGATGCCAATGTCCTAGACA
* *
49635106 TGGTCTTACATGTAATCACA-ATACAATGCCAATGTCCCAGACA
1 TGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCTAGACA
49635149 TGGTCTTACATGTAATC
1 TGGTCTTACATGTAATC
49635166 TCATCTCCAT
Statistics
Matches: 89, Mismatches: 7, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
41 2 0.02
42 2 0.02
43 81 0.91
44 4 0.04
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (43 bp):
TGGTCTTACATGTAATCACATATCGATGCCAATGTCCTAGACA
Found at i:49637009 original size:24 final size:24
Alignment explanation
Indices: 49636982--49637029 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
49636972 TCAAGTGCGC
*
49636982 ATGTCTTAATGTAAAGACCATAAT
1 ATGTCTTAATATAAAGACCATAAT
*
49637006 ATGTCTTAATATAAATACCATAAT
1 ATGTCTTAATATAAAGACCATAAT
49637030 TCATATTAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.44, C:0.12, G:0.08, T:0.35
Consensus pattern (24 bp):
ATGTCTTAATATAAAGACCATAAT
Found at i:49640898 original size:40 final size:40
Alignment explanation
Indices: 49640777--49640905 Score: 149
Period size: 40 Copynumber: 3.3 Consensus size: 40
49640767 GGACTAGGAT
* * *
49640777 CCGAAGGCATTCGTGCGAGTTAATAAATCCGGGCTAAG-C
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAGTC
*
49640816 CCGAAGGCATT-GTGCAAGTTACTAAACCCGGG-TTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTT-AGTC
** *
49640855 CCGAAGGCATTCGTGCGAGTCGCTATAA-CCGGGCTTCGTC
1 CCGAAGGCATTCGTGCGAGTTACTA-AACCCGGGCTTAGTC
49640895 CCGAAGGCATT
1 CCGAAGGCATT
49640906 TGAGCGATTC
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
37 1 0.01
38 20 0.26
39 23 0.30
40 29 0.38
41 4 0.05
ACGTcount: A:0.25, C:0.26, G:0.28, T:0.22
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAACCCGGGCTTAGTC
Found at i:49643143 original size:65 final size:65
Alignment explanation
Indices: 49643039--49643166 Score: 238
Period size: 65 Copynumber: 2.0 Consensus size: 65
49643029 CCCCTAAGGT
*
49643039 TAAGGTTGACCTGAATGCATGTTTAACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTCAACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
*
49643104 TAAGGTTGACCTGAATGCATGTTCGACTGTTACTATTTACTGCATGCCATGTTATTATTATCT
1 TAAGGTTGACCTGAATGCATGTTCAACTGTTACTATTTACTGCATGCCATGTTATTATTATCT
49643167 AATGCATGGG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.41
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTCAACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:49647602 original size:28 final size:28
Alignment explanation
Indices: 49647541--49647638 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
49647531 TCACAAATTG
** * *
49647541 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
49647570 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
49647598 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
49647626 GCACTAAGTGTGC
1 GCACTAAGTGTGC
49647639 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:49655286 original size:28 final size:28
Alignment explanation
Indices: 49655225--49655322 Score: 108
Period size: 28 Copynumber: 3.5 Consensus size: 28
49655215 TCACAAATTG
** * *
49655225 GCACTAAGTGTGCGGGTTCAAATTATACA
1 GCACTAAGTGTGCAAGTTC-GATTATATA
*
49655254 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCAAGTTCGATTATATA
* *
49655282 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCAAGTTCGATTATAT-A
49655310 GCACTAAGTGTGC
1 GCACTAAGTGTGC
49655323 GGGCTTATTG
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.72
29 16 0.27
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTCGATTATATA
Found at i:49658755 original size:34 final size:35
Alignment explanation
Indices: 49658704--49658775 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
49658694 ATTCTGTAGT
*
49658704 TAGGGTAATACTGAAACTGTAGAA-ACTAAGACAG
1 TAGGGTAAAACTGAAACTGTAGAAGACTAAGACAG
* * *
49658738 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGACTG
1 TAGGGTAAAACTG-AAACTGTAGAAGACTAAGACAG
49658773 TAG
1 TAG
49658776 CTAGTATACG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.19
34 15 0.47
35 11 0.34
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (35 bp):
TAGGGTAAAACTGAAACTGTAGAAGACTAAGACAG
Found at i:49661503 original size:65 final size:65
Alignment explanation
Indices: 49661394--49661521 Score: 247
Period size: 65 Copynumber: 2.0 Consensus size: 65
49661384 CCCCTAGGGT
*
49661394 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTATTGCATGCCATGTTATTATTATCTGA
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
49661459 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCT
1 TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCT
49661522 AATGCATGGG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.43
Consensus pattern (65 bp):
TAAGGTTGACCTGAATGCATGTTTGACTGTTACTATTTACTGCATGCCATGTTATTATTATCTGA
Found at i:49665163 original size:21 final size:21
Alignment explanation
Indices: 49665137--49665179 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
49665127 ATCGGCACTT
49665137 GGCCTACTAGGTATAAAACCC
1 GGCCTACTAGGTATAAAACCC
49665158 GGCCTACTAGGTATAAAACCC
1 GGCCTACTAGGTATAAAACCC
49665179 G
1 G
49665180 AAATTATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.28, G:0.21, T:0.19
Consensus pattern (21 bp):
GGCCTACTAGGTATAAAACCC
Found at i:49665235 original size:39 final size:39
Alignment explanation
Indices: 49665191--49665467 Score: 437
Period size: 39 Copynumber: 7.1 Consensus size: 39
49665181 AATTATATTA
* * * *
49665191 CCAGCACAAAGCCTACGGGACTTTAACCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
49665230 CCAGCACGAAGCCTGCGAGACTTTGGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
49665269 CCAGCATGAAGCCTGCGGGACTTTAGCCCGGATATATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
49665308 CTAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
49665347 CCAGCACGAAGCCTGCGGGACTTTGGCCCGGATATATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
49665386 CCAGCACGAAGCCTGCAGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
49665425 CCAGCACGAAGCCTGTGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
49665464 CCAG
1 CCAG
49665468 TGTCTTGCAT
Statistics
Matches: 217, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 217 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:49669667 original size:29 final size:29
Alignment explanation
Indices: 49669635--49669707 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
49669625 CTTCGAGCTC
* *
49669635 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
49669664 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
49669693 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
49669708 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:49670922 original size:24 final size:24
Alignment explanation
Indices: 49670881--49670936 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
49670871 TTTTTTTCCT
49670881 TTTCTTTGTTTTTCTTCATATTCTC
1 TTTCTTTGTTTTTCTTCAT-TTCTC
* *
49670906 TTTCTTT-TTTTTTTTCATTTCTT
1 TTTCTTTGTTTTTCTTCATTTCTC
49670929 TATTCTTT
1 T-TTCTTT
49670937 CTACATAATC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 5 0.18
24 16 0.57
25 7 0.25
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (24 bp):
TTTCTTTGTTTTTCTTCATTTCTC
Found at i:49684180 original size:46 final size:46
Alignment explanation
Indices: 49684108--49684366 Score: 294
Period size: 46 Copynumber: 5.7 Consensus size: 46
49684098 ATTGTGAGAT
*
49684108 AGTGCAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
*
49684154 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
* * ** *
49684200 AGTGTAAGACATGTCTGGGACATGCATCGG-TTAGAGAGGT--GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
* * * *
49684243 AGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACGAGT--GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAC-A-TAAGCC
* * * * *
49684291 AGTGTAAGAAATGTTTGGGACATGCATCGGCCTTGAGACGTAAGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
*
49684337 AGTGTAAGACATGTTTGGGACATGCATCGG
1 AGTGTAAGACATGTCTGGGACATGCATCGG
49684367 GTACGAGAGG
Statistics
Matches: 183, Mismatches: 23, Indels: 14
0.83 0.10 0.06
Matches are distributed among these distances:
43 11 0.06
44 15 0.08
45 11 0.06
46 123 0.67
47 12 0.07
48 11 0.06
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCC
Found at i:49684316 original size:91 final size:89
Alignment explanation
Indices: 49684108--49684364 Score: 268
Period size: 91 Copynumber: 2.8 Consensus size: 89
49684098 ATTGTGAGAT
* * * * *
49684108 AGTGCAAGACATGTCTGGGACATGCATCGGCCTCGAGACATAAGCCAGTGTAAGACATGTCTGGG
1 AGTGTAAGAAATGTCTGGGACATGCATCGG-CTTGAGACGT-AGGCAGTGTAAGACATGTCTGGG
* *
49684173 ACATGCATCGGCCTCAAGACATAAGCC
64 ACATGCATCAGCATCAAGACAT-AGCC
* * *
49684200 AGTGTAAGACATGTCTGGGACATGCATCGG-TTAGAGAGGT-GTCAGTGTAAGACCATGTCTGGG
1 AGTGTAAGAAATGTCTGGGACATGCATCGGCTT-GAGACGTAGGCAGTGTAAGA-CATGTCTGGG
** *
49684263 ACATGGCATCAGCATTGAGACGAGT-GCT
64 ACAT-GCATCAGCATCAAGAC-A-TAGCC
* *
49684291 AGTGTAAGAAATGTTTGGGACATGCATCGGCCTTGAGACGTAAGGCAGTGTAAGACATGTTTGGG
1 AGTGTAAGAAATGTCTGGGACATGCATCGG-CTTGAGACGT-AGGCAGTGTAAGACATGTCTGGG
49684356 ACATGCATC
64 ACATGCATC
49684365 GGGTACGAGA
Statistics
Matches: 141, Mismatches: 15, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
89 11 0.08
90 15 0.11
91 47 0.33
92 41 0.29
93 16 0.11
94 11 0.08
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (89 bp):
AGTGTAAGAAATGTCTGGGACATGCATCGGCTTGAGACGTAGGCAGTGTAAGACATGTCTGGGAC
ATGCATCAGCATCAAGACATAGCC
Found at i:49684410 original size:46 final size:44
Alignment explanation
Indices: 49684108--49684410 Score: 211
Period size: 46 Copynumber: 6.6 Consensus size: 44
49684098 ATTGTGAGAT
* * * ** *
49684108 AGTGCAAGACATGTCTGGGACATGCATCGGCCT-CGAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-GTATGAGAGGT--GGC
* * * *** *
49684154 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-GT-ATGAGAGGTGGC
* *
49684200 AGTGTAAGACATGTCTGGGACATGCATCGGTTA-GAGAGGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGGTATGAGAGGTGGC
* *
49684243 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGACGAGT-GC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGGTA-TGAGA-G-GTGGC
* * * *
49684290 TAGTGTAAGAAATGTTTGGGACATGCATCGGCCT-TGAGACGTAAGGC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-GTATGAGAGGT--GGC
* *
49684337 AGTGTAAGACATGTTTGGGACATGCATCGGGTACGAGAGGTGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGGTATGAGAGGTGGC
*
49684381 AGTGTAAGACCATGTCTAGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
49684411 AACACAAATA
Statistics
Matches: 213, Mismatches: 27, Indels: 34
0.78 0.10 0.12
Matches are distributed among these distances:
43 14 0.07
44 30 0.14
45 19 0.09
46 119 0.56
47 16 0.08
48 15 0.07
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGGTATGAGAGGTGGC
Found at i:49684511 original size:50 final size:50
Alignment explanation
Indices: 49684382--49684557 Score: 225
Period size: 50 Copynumber: 3.6 Consensus size: 50
49684372 AGAGGTGGCA
* * *
49684382 GTGTAAGACCATGTCTAGGACATGGCATCAACACAAATATGCTAGAGCTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCTAGAGCTT
49684432 GTGTAAGACCATGT-TCGGGACATGGCATCGACACAGATATGCTAGAGCTT
1 GTGTAAGACCATGTCT-GGGACATGGCATCGACACAGATATGCTAGAGCTT
* ** * * *
49684482 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG--AGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCTAGAGCTT
*
49684530 GTGTAAGA-CATGTCTGGGATATGGCATC
1 GTGTAAGACCATGTCTGGGACATGGCATC
49684558 AGCACCTGCA
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
47 19 0.17
48 13 0.11
49 1 0.01
50 80 0.70
51 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACACAGATATGCTAGAGCTT
Found at i:49688070 original size:41 final size:40
Alignment explanation
Indices: 49687903--49688082 Score: 200
Period size: 40 Copynumber: 4.5 Consensus size: 40
49687893 GCTCGATTGT
* * * * *
49687903 CTTCGGGACATT-TCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGAC-TTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * *
49687943 CTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
*
49687983 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
1 CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
* * * *
49688023 CTTCGGGACTTAACCAGGTTTTAGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTAGTAAC-TCGCACAAATGC
*
49688064 CTTCGGGACTTAGCCCGGT
1 CTTCGGGACTTAACCCGGT
49688083 ACCATTCGAA
Statistics
Matches: 118, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
39 2 0.02
40 89 0.75
41 27 0.23
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTAGTAACTCGCACAAATGC
Found at i:49689840 original size:39 final size:39
Alignment explanation
Indices: 49689782--49689925 Score: 128
Period size: 40 Copynumber: 3.6 Consensus size: 39
49689772 CCGCACCAAG
* * *
49689782 GCCTACGGGACTTAACCCGGATATCACGA-TTGCACAAAT
1 GCCTTCGGGTCTTAACCCGGATAT-ACGACTAGCACAAAT
* * * * *
49689821 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAACCCGGATA-TACGACTAGCACAAAT
* * * * *
49689861 GCCTTTGGGTCTTAGCCCGGATATAGCCACTAGCACCATT
1 GCCTTCGGGTCTTAACCCGGATATA-CGACTAGCACAAAT
*
49689901 GCCTTCGGGTCTTAACCCGGTTATA
1 GCCTTCGGGTCTTAACCCGGATATA
49689926 ATTTCCAGCA
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
39 24 0.28
40 61 0.72
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
GCCTTCGGGTCTTAACCCGGATATACGACTAGCACAAAT
Found at i:49692005 original size:71 final size:71
Alignment explanation
Indices: 49691919--49692082 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49691909 CGATTTGTCT
49691919 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49691984 CTTTCA
66 CTTTCA
49691990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
49692055 CTTTCA
66 CTTTCA
49692061 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
49692083 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:49692120 original size:71 final size:70
Alignment explanation
Indices: 49691919--49692116 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
49691909 CGATTTGTCT
* * * *
49691919 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49691984 CTTTCA
65 CTTTCA
* * * *
49691990 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
49692055 CTTTCA
65 CTTTCA
* *
49692061 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
49692117 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:49712160 original size:56 final size:56
Alignment explanation
Indices: 49712097--49712236 Score: 190
Period size: 56 Copynumber: 2.5 Consensus size: 56
49712087 CATGGCATCA
* *
49712097 ATATATGTGTGCAAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTCCG
1 ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCG
* * * *
49712153 ATATATGTGTGCGAGTAAGACCACGTTTCATATGTTGGCATCAATATGTGATTCTG
1 ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCG
* *
49712209 ATATATGTGATTACACGTAAGACCACGT
1 ATATATGTG--TGCAAGTAAGACCACGT
49712237 CTGGGAGGTT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
56 59 0.81
58 14 0.19
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (56 bp):
ATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTCCG
Found at i:49712443 original size:17 final size:16
Alignment explanation
Indices: 49712404--49712434 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49712394 TGGTTGTTTG
*
49712404 GTATGTGATACAAATT
1 GTATATGATACAAATT
49712420 GTATATGATACAAAT
1 GTATATGATACAAAT
49712435 GAATATATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (16 bp):
GTATATGATACAAATT
Found at i:49716143 original size:27 final size:26
Alignment explanation
Indices: 49716081--49716173 Score: 123
Period size: 27 Copynumber: 3.5 Consensus size: 26
49716071 CATGGCTGCT
* *
49716081 AGAACAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
*
49716107 AGATATAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAAT-GTGGCAGAGCCACC
49716135 AGAACAGATATATGTGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
*
49716162 AGATCAGATAAT
1 AGAACAGATAAT
49716174 TATGGTGTAG
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.08
27 37 0.63
28 17 0.29
ACGTcount: A:0.40, C:0.19, G:0.24, T:0.17
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:49718029 original size:39 final size:39
Alignment explanation
Indices: 49717975--49718087 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
49717965 AATGTTCGAG
49717975 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
49718014 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* **
49718053 TGATATCCGGGTTAAGTCCCGAAGGCGTTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
49718088 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 52 0.76
40 16 0.24
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:49726912 original size:79 final size:77
Alignment explanation
Indices: 49726802--49727024 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 77
49726792 GCTACTCGTT
* * * *
49726802 CAAATGCCTTCGGGACATAGCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGG-CTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
49726867 TTTAGTAACTCGCA
65 -TTAGTAACTCGCA
*
49726881 CAAATGCCTTCGGGCTTAGCCCAGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAG-CC-GGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
49726944 GATTAGTAACTTGCA
63 GATTAGTAACTCGCA
* * *
49726959 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAG-CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
49727023 GA
63 GA
49727025 CATCATTCGA
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
78 36 0.29
79 76 0.60
80 14 0.11
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TAGTAACTCGCA
Found at i:49726922 original size:39 final size:39
Alignment explanation
Indices: 49726802--49727024 Score: 267
Period size: 39 Copynumber: 5.7 Consensus size: 39
49726792 GCTACTCGTT
* *
49726802 CAAATGCCTTCGGGACATAG-CCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGTAACTCGCA
* *
49726841 TAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTAACTCGCA
49726881 CAAATGCCTTCGGG-CTTAGCCCAGGATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTAGTAACTCGCA
* *
49726920 CAAATGCCTTC-GGATCTTAGTCCGGATTAGTAACTTGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTAGTAACTCGCA
* * *
49726959 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TAGTAAC-TCGCA
49727000 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49727025 CATCATTCGA
Statistics
Matches: 165, Mismatches: 11, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
38 2 0.01
39 90 0.55
40 61 0.37
41 12 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTAACTCGCA
Found at i:49726984 original size:118 final size:119
Alignment explanation
Indices: 49726802--49727021 Score: 288
Period size: 118 Copynumber: 1.9 Consensus size: 119
49726792 GCTACTCGTT
* *
49726802 CAAATGCCTTCGGGACATAGCCGGTTATAGTAACTCGCATAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
* *
49726867 TTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCAGGATTAGTAACTCGCA
66 TATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCAGGATTAGTAACTCGCA
* * **
49726920 CAAATGCCTTC-GGATCTTAGTCCGGAT-TAGTAACTTGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGA-CATAG-CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
*
49726982 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
63 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCC
49727022 GGACATCATT
Statistics
Matches: 88, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
117 6 0.07
118 61 0.69
119 21 0.24
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAGCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCAGGATTAGTAACTCGCA
Found at i:49737016 original size:48 final size:47
Alignment explanation
Indices: 49736945--49737072 Score: 166
Period size: 48 Copynumber: 2.7 Consensus size: 47
49736935 ATGGAAAAAT
49736945 GTGGTGCTAAGTGGATATACCATGATTAAACATATTGATACATGTAAC
1 GTGGTGCTAAGTGGATATACCATGATTAAACATATTGATACAT-TAAC
* * * * **
49736993 GTGGTGCTAAGTGGATATGCCATGGTTACATATATTGATTTATTAAC
1 GTGGTGCTAAGTGGATATACCATGATTAAACATATTGATACATTAAC
* * *
49737040 ATGGTGCTAAGTGGATATACCACGTTTAAACAT
1 GTGGTGCTAAGTGGATATACCATGATTAAACAT
49737073 GTAACGTGGT
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 31 0.46
48 37 0.54
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.34
Consensus pattern (47 bp):
GTGGTGCTAAGTGGATATACCATGATTAAACATATTGATACATTAAC
Found at i:49737092 original size:38 final size:38
Alignment explanation
Indices: 49737036--49737110 Score: 114
Period size: 38 Copynumber: 2.0 Consensus size: 38
49737026 ATTGATTTAT
*
49737036 TAACATGGTGCTAAGTGGATATACCACGTTTAAACATG
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
* * *
49737074 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACAT
1 TAACATGGTGCTAAGTGGATATACCACGGTTAAACAT
49737111 ATTAATTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATACCACGGTTAAACATG
Found at i:49741316 original size:21 final size:21
Alignment explanation
Indices: 49741292--49741351 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
49741282 TCTACTGCCA
*
49741292 TCGCAGCTGCCTCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
49741313 TCGCTGCTGCCGT-TGCCTCCC
1 TCGCTGCTGCC-TCTGCCTCCC
49741334 TCGCTGCTG-CTGCTGCCT
1 TCGCTGCTGCCT-CTGCCT
49741352 TCACTCTAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
19 1 0.03
20 1 0.03
21 32 0.91
22 1 0.03
ACGTcount: A:0.02, C:0.47, G:0.23, T:0.28
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:49741792 original size:13 final size:14
Alignment explanation
Indices: 49741765--49741793 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
49741755 TGATGAATTG
49741765 AATTAAACAATTAT
1 AATTAAACAATTAT
49741779 AATTAAACAA-TAT
1 AATTAAACAATTAT
49741792 AA
1 AA
49741794 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:49741982 original size:17 final size:16
Alignment explanation
Indices: 49741960--49741998 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
49741950 AAAATATTAT
49741960 TTAATAGTAGAAAGTAA
1 TTAATAGTAGAAAG-AA
* *
49741977 TTAATATTTGAAAGAA
1 TTAATAGTAGAAAGAA
49741993 TTAATA
1 TTAATA
49741999 AATTCATAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (16 bp):
TTAATAGTAGAAAGAA
Found at i:49746920 original size:9 final size:9
Alignment explanation
Indices: 49746889--49747012 Score: 60
Period size: 9 Copynumber: 14.0 Consensus size: 9
49746879 TATGTATTAC
*
49746889 GTAAGTTAA
1 GTAAGTTAT
49746898 GTAAGCTT-T
1 GTAAG-TTAT
*
49746907 ATAAGTTAT
1 GTAAGTTAT
49746916 GTAAGTTAT
1 GTAAGTTAT
* *
49746925 GTTA-TGAT
1 GTAAGTTAT
* *
49746933 ATACATTTAT
1 GTA-AGTTAT
*
49746943 GTAAGGTAT
1 GTAAGTTAT
49746952 GTAAGTTAT
1 GTAAGTTAT
* *
49746961 GATATGATAT
1 G-TAAGTTAT
* *
49746971 AT-ATTTAT
1 GTAAGTTAT
*
49746979 GT-A-TTTT
1 GTAAGTTAT
*
49746986 GTAAGGTAT
1 GTAAGTTAT
*
49746995 ATAAGTTAT
1 GTAAGTTAT
49747004 GTAAGTTAT
1 GTAAGTTAT
49747013 TATATGATAT
Statistics
Matches: 83, Mismatches: 25, Indels: 14
0.68 0.20 0.11
Matches are distributed among these distances:
7 5 0.06
8 12 0.14
9 53 0.64
10 13 0.16
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:49746953 original size:36 final size:36
Alignment explanation
Indices: 49746908--49746981 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
49746898 GTAAGCTTTA
* *
49746908 TAAGTTATGTAAGTTATGTTATGATATACATTTATG
1 TAAGGTATGTAAGTTATGATATGATATACATTTATG
*
49746944 TAAGGTATGTAAGTTATGATATGATATATATTTATG
1 TAAGGTATGTAAGTTATGATATGATATACATTTATG
49746980 TA
1 TA
49746982 TTTTGTAAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.35, C:0.01, G:0.18, T:0.46
Consensus pattern (36 bp):
TAAGGTATGTAAGTTATGATATGATATACATTTATG
Found at i:49747033 original size:13 final size:13
Alignment explanation
Indices: 49747010--49747044 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
49747000 TTATGTAAGT
*
49747010 TATTATATGATATA
1 TATT-TATGATACA
49747024 TATTTATGATACA
1 TATTTATGATACA
49747037 TATTTATG
1 TATTTATG
49747045 TATTATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (13 bp):
TATTTATGATACA
Found at i:49747072 original size:56 final size:52
Alignment explanation
Indices: 49746939--49747085 Score: 172
Period size: 52 Copynumber: 2.8 Consensus size: 52
49746929 TGATATACAT
* *
49746939 TTATGTAAGGTATGTAAGTTATGATATGATATATATTTATGTATTTTGTAAG
1 TTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTTTGTAAG
* *
49746991 GTATATAAGTTATGTAAGTTATTATATGATATATATTTATGATACATATTTATGT-A-
1 TTATGTAAGTTATGTAAGTTATTATATGATATATATTTATG-----TATTT-TGTAAG
* *
49747047 TTATGTAAGTTTTGTAAGTTTTTATATGATATATATTTA
1 TTATGTAAGTTATGTAAGTTATTATATGATATATATTTA
49747086 ACATTAAGAT
Statistics
Matches: 81, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
52 37 0.46
56 35 0.43
57 6 0.07
58 3 0.04
ACGTcount: A:0.34, C:0.01, G:0.15, T:0.50
Consensus pattern (52 bp):
TTATGTAAGTTATGTAAGTTATTATATGATATATATTTATGTATTTTGTAAG
Found at i:49748166 original size:19 final size:19
Alignment explanation
Indices: 49748142--49748181 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
49748132 TACAAAGCTC
49748142 GTTGGTATATCAAATTATA
1 GTTGGTATATCAAATTATA
49748161 GTTGGTATATCAAATTATA
1 GTTGGTATATCAAATTATA
49748180 GT
1 GT
49748182 CAAATCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.05, G:0.17, T:0.42
Consensus pattern (19 bp):
GTTGGTATATCAAATTATA
Found at i:49751133 original size:16 final size:16
Alignment explanation
Indices: 49751091--49751137 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
49751081 ACCTCCATTT
49751091 TATATTCATTTTTTTTG
1 TATA-TCATTTTTTTTG
* *
49751108 TATTTAATTTTTATTTG
1 TATATCATTTTT-TTTG
49751125 T-TATCATTTTTTT
1 TATATCATTTTTTT
49751138 AAATCTAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 2 0.08
16 15 0.60
17 8 0.32
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.72
Consensus pattern (16 bp):
TATATCATTTTTTTTG
Found at i:49751214 original size:14 final size:14
Alignment explanation
Indices: 49751179--49751215 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
49751169 TATTATCTCT
49751179 TAAATAATTTAATC
1 TAAATAATTTAATC
49751193 TAAA-AATTTAATC
1 TAAATAATTTAATC
49751206 TAAATAATTT
1 TAAATAATTT
49751216 CATTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:49751355 original size:7 final size:7
Alignment explanation
Indices: 49751330--49751401 Score: 56
Period size: 7 Copynumber: 10.1 Consensus size: 7
49751320 ACTAATTTAT
49751330 CTAAACC
1 CTAAACC
*
49751337 CTAATCC
1 CTAAACC
*
49751344 TCTAATCC
1 -CTAAACC
49751352 CTAAACC
1 CTAAACC
*
49751359 CTAAAATC
1 CT-AAACC
*
49751367 ATAAACC
1 CTAAACC
**
49751374 CTTTA-C
1 CTAAACC
*
49751380 ATAAACC
1 CTAAACC
49751387 CTAAACC
1 CTAAACC
49751394 CTAAACC
1 CTAAACC
49751401 C
1 C
49751402 GTAACATGTA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
6 3 0.06
7 35 0.70
8 12 0.24
ACGTcount: A:0.40, C:0.38, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:49751408 original size:27 final size:28
Alignment explanation
Indices: 49751353--49751408 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
49751343 CTCTAATCCC
* * *
49751353 TAAACCCTAAAATCATAAACCCTTTACA
1 TAAACCCTAAAACCATAAACCCGTAACA
*
49751381 TAAACCCT-AAACCCTAAACCCGTAACA
1 TAAACCCTAAAACCATAAACCCGTAACA
49751408 T
1 T
49751409 GTAACCATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 16 0.67
28 8 0.33
ACGTcount: A:0.45, C:0.32, G:0.02, T:0.21
Consensus pattern (28 bp):
TAAACCCTAAAACCATAAACCCGTAACA
Found at i:49751480 original size:15 final size:15
Alignment explanation
Indices: 49751460--49751492 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
49751450 TATTAACCAT
*
49751460 AAACCCTAAACTCTA
1 AAACCCTAAACCCTA
49751475 AAACCCTAAACCCTA
1 AAACCCTAAACCCTA
49751490 AAA
1 AAA
49751493 AACATAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:49751675 original size:21 final size:21
Alignment explanation
Indices: 49751630--49751675 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
49751620 CCTAAAACCC
* ** *
49751630 TAAACCATATACCCTAATTTG
1 TAAACCATAAACCCTAAACTA
49751651 TAAACCATAAACCCTAAACTA
1 TAAACCATAAACCCTAAACTA
49751672 TAAA
1 TAAA
49751676 GATAATTAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.24, G:0.02, T:0.26
Consensus pattern (21 bp):
TAAACCATAAACCCTAAACTA
Found at i:49751929 original size:21 final size:22
Alignment explanation
Indices: 49751900--49751940 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
49751890 CTTAAAATAA
*
49751900 TAACTCATAAACCTTAAACCCT
1 TAACTCATAAACCCTAAACCCT
*
49751922 TAAC-CATATACCCTAAACC
1 TAACTCATAAACCCTAAACC
49751941 GTAAAGTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.24
Consensus pattern (22 bp):
TAACTCATAAACCCTAAACCCT
Found at i:49755459 original size:40 final size:40
Alignment explanation
Indices: 49755400--49755501 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 40
49755390 AAATTGAATG
* * *
49755400 ATATCCGGGCTAAGCCCCGAAGAAAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGAAAATTATGCTAGAAACT
** * ***
49755440 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGAAAATTATGCTAGAAACT
49755480 ATATCCGGGCTAAGACCCGAAG
1 ATATCCGGGCTAAGACCCGAAG
49755502 GCATTCGTGC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGAAAATTATGCTAGAAACT
Found at i:49755502 original size:40 final size:40
Alignment explanation
Indices: 49755439--49755567 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
49755429 TGCTGGAAAT
* *
49755439 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* *
49755479 TATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
49755519 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
49755559 TATATCCGG
1 TATATCCGG
49755568 TTATATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.92
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:49774883 original size:40 final size:39
Alignment explanation
Indices: 49774702--49774853 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
49774692 AATGTTCGAG
49774702 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
49774741 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
49774780 TGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
49774819 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
49774854 GGTTACCATA
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.24, C:0.22, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:49783005 original size:40 final size:39
Alignment explanation
Indices: 49782961--49783142 Score: 247
Period size: 39 Copynumber: 4.6 Consensus size: 39
49782951 GTTCAAAACA
* * ** * *
49782961 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
49783001 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
49783041 CCTTCGGGCTTAGCCCGGGTATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
49783080 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
49783119 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
49783143 CTCGAACATT
Statistics
Matches: 129, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 89 0.69
40 40 0.31
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:49783072 original size:39 final size:39
Alignment explanation
Indices: 49782991--49783142 Score: 250
Period size: 39 Copynumber: 3.9 Consensus size: 39
49782981 TATGGTAACC
* * * *
49782991 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCT
*
49783031 CGCACAATTGCCTTCGGGCTTAGCCCGGGTATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
49783070 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
49783109 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCA
49783143 CTCGAACATT
Statistics
Matches: 106, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 89 0.84
40 17 0.16
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
Found at i:49791002 original size:43 final size:43
Alignment explanation
Indices: 49790951--49791037 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
49790941 TGAGGTATGT
* *
49790951 AGCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCA
1 AGCATCCGAGCTCGTTGAGAGGTCCAAGCTCATAATGGATGCA
*
49790994 AGCATCCGAGCTCGTTGAGAGGTCCGAGCTCATAATGGATGCA
1 AGCATCCGAGCTCGTTGAGAGGTCCAAGCTCATAATGGATGCA
49791037 A
1 A
49791038 TACATGTAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTCCAAGCTCATAATGGATGCA
Found at i:49796541 original size:51 final size:49
Alignment explanation
Indices: 49796463--49796658 Score: 205
Period size: 50 Copynumber: 3.9 Consensus size: 49
49796453 TCTATTGTGA
* * *
49796463 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * ** **
49796513 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* *
49796563 AGGTCACATGTGTAGTACTAAGTGCAGGGTACTACGTGTACC-GAATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAG-ATAATT
* * * *
49796613 GGTCGCATGTGTAGTACTAAGTGCAAGCTACGATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
49796659 GCTTTGGCTA
Statistics
Matches: 121, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
49 39 0.32
50 43 0.36
51 39 0.32
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Done.