Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 169 of 328
Found at i:49806621 original size:22 final size:21
Alignment explanation
Indices: 49806580--49806623 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
49806570 ATATGTGCAT
49806580 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
49806602 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
49806624 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:49814148 original size:22 final size:22
Alignment explanation
Indices: 49814123--49814166 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
49814113 ATATGTGCAT
*
49814123 ATATGAA-GTTATCCATTTAGCC
1 ATATGAATGTTATACA-TTAGCC
49814145 ATATGAATGTTATACATTAGCC
1 ATATGAATGTTATACATTAGCC
49814167 GAAACTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (22 bp):
ATATGAATGTTATACATTAGCC
Found at i:49817632 original size:16 final size:16
Alignment explanation
Indices: 49817611--49817655 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
49817601 TAAATAAATT
*
49817611 ATAAAAAATCATAAAA
1 ATAAAAAATCAAAAAA
49817627 ATAAAAAAT-AAAAAA
1 ATAAAAAATCAAAAAA
49817642 ATAGAGAAAATCAA
1 ATA-A-AAAATCAA
49817656 TTCAACTAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 10 0.40
17 5 0.20
18 2 0.08
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (16 bp):
ATAAAAAATCAAAAAA
Found at i:49823719 original size:6 final size:6
Alignment explanation
Indices: 49823708--49823788 Score: 78
Period size: 6 Copynumber: 13.7 Consensus size: 6
49823698 AAGAAAATTG
* * * *
49823708 AAAAAT AAAAAT CAAAAG AAAAAT AAGAAT -AAAAT AAATAAA ATAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A-AAAAT
*
49823757 AAAAAT AAGAAT --AAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
49823789 TAAGAGGATT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
4 3 0.05
5 4 0.07
6 45 0.75
7 6 0.10
8 2 0.03
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:49823748 original size:4 final size:5
Alignment explanation
Indices: 49823727--49823791 Score: 71
Period size: 5 Copynumber: 12.4 Consensus size: 5
49823717 AATCAAAAGA
49823727 AAAAT AAGAAT AAAAT -AAAT AAAAT AAAAT AAAAAT AAGAAT -AAAT
1 AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT -AAAAT AA-AAT AAAAT
49823773 AAAAAT AAAAAT AAAAT AA
1 -AAAAT -AAAAT AAAAT AA
49823792 GAGGATTCAA
Statistics
Matches: 54, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
4 7 0.13
5 24 0.44
6 23 0.43
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:49831086 original size:13 final size:15
Alignment explanation
Indices: 49831058--49831090 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
49831048 AAGTTTGTAA
49831058 TATTTTATATTATGT
1 TATTTTATATTATGT
49831073 TATTTT-TA-TATGT
1 TATTTTATATTATGT
49831086 TATTT
1 TATTT
49831091 AATTTAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 2 0.11
15 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (15 bp):
TATTTTATATTATGT
Found at i:49831194 original size:26 final size:25
Alignment explanation
Indices: 49831165--49831224 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
49831155 TAAAATGACT
* *
49831165 ATATATAAAATTTTTCAATAAATAAA
1 ATATATAAAATTATTAAAT-AATAAA
* *
49831191 ATATATATAATTATTAAATATTAAA
1 ATATATAAAATTATTAAATAATAAA
49831216 ATAATATAA
1 AT-ATATAA
49831225 TATAGATTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATATATAAAATTATTAAATAATAAA
Found at i:49831779 original size:2 final size:2
Alignment explanation
Indices: 49831766--49831801 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
49831756 TAATAATTAA
*
49831766 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
49831802 GTGTGTGTGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:49832558 original size:9 final size:9
Alignment explanation
Indices: 49832544--49832574 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
49832534 AAAATTTAGT
*
49832544 AATTAACAG
1 AATTAACTG
49832553 AATTAACTG
1 AATTAACTG
49832562 AATTAACTG
1 AATTAACTG
49832571 AATT
1 AATT
49832575 TATATGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.48, C:0.10, G:0.10, T:0.32
Consensus pattern (9 bp):
AATTAACTG
Found at i:49837565 original size:27 final size:28
Alignment explanation
Indices: 49837508--49837577 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
49837498 AAATTTGTAC
**
49837508 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
49837536 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
49837563 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49837578 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:49837586 original size:27 final size:27
Alignment explanation
Indices: 49837508--49837589 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
49837498 AAATTTGTAC
* *
49837508 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
49837536 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
49837563 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
49837590 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:49845498 original size:27 final size:28
Alignment explanation
Indices: 49845441--49845510 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
49845431 AAATTTGTAC
**
49845441 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
49845469 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
49845496 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49845511 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:49845519 original size:27 final size:27
Alignment explanation
Indices: 49845441--49845522 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
49845431 AAATTTGTAC
* *
49845441 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
49845469 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
49845496 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
49845523 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:49853088 original size:47 final size:47
Alignment explanation
Indices: 49853028--49853157 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
49853018 TCAATCTATA
* * * *
49853028 AATACTTATACCATAGCCCGTAGCCAAATCAAGGTAACTTATCCTGG
1 AATACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTGG
* * * *
49853075 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCCTCTTTG
1 AATACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTGG
*
49853122 AATACCTATACCATGGCCCACAGCCAAATCAAGGTA
1 AATACCTATACCATGGCCCATAGCCAAATCAAGGTA
49853158 TTATTCGCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (47 bp):
AATACCTATACCATGGCCCATAGCCAAATCAAGGTAACTCATCCTGG
Found at i:49857267 original size:14 final size:14
Alignment explanation
Indices: 49857248--49857275 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
49857238 TTTGGAAGTG
49857248 TATATATATACATA
1 TATATATATACATA
49857262 TATATATATACATA
1 TATATATATACATA
49857276 AGTATGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATATATATACATA
Found at i:49857806 original size:27 final size:28
Alignment explanation
Indices: 49857750--49857819 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
49857740 AAATTGGTAC
49857750 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
49857778 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
49857805 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
49857820 GAATCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:49862617 original size:18 final size:19
Alignment explanation
Indices: 49862594--49862636 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
49862584 CTGAAGCAAC
49862594 TGTAGATC-ACATTCCTTT
1 TGTAGATCAACATTCCTTT
49862612 TGTAGATCAACATTCCTTT
1 TGTAGATCAACATTCCTTT
49862631 TGTAGA
1 TGTAGA
49862637 CCTCTTGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.26, C:0.19, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTAGATCAACATTCCTTT
Found at i:49864631 original size:68 final size:70
Alignment explanation
Indices: 49864559--49864756 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
49864549 ACACCCTGTA
* * * *
49864559 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
49864621 ATAAAT
65 ATAAAT
*
49864627 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
49864692 ATAAAT
65 ATAAAT
*
49864698 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
49864757 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:49864670 original size:41 final size:41
Alignment explanation
Indices: 49864625--49864742 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
49864615 TGAAAGATAA
49864625 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
49864666 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
49864696 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
49864737 ATGTAG
1 ATGTAG
49864743 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:49864682 original size:71 final size:71
Alignment explanation
Indices: 49864593--49864756 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
49864583 GAGATGTATC
49864593 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49864658 AGGACA
66 AGGACA
49864664 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
49864729 AGGACA
66 AGGACA
49864735 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
49864757 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:49868319 original size:56 final size:56
Alignment explanation
Indices: 49868199--49868321 Score: 201
Period size: 56 Copynumber: 2.2 Consensus size: 56
49868189 ACCATGACAT
*
49868199 CAATATATGTGTGCAAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
1 CAATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
* *
49868255 CAACATATGTGTGCGAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
1 CAATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
**
49868311 TGATATATGTG
1 CAATATATGTG
49868322 ATTACATGTA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (56 bp):
CAATATATGTGTGCAAGTAAGACCACGTTTAATACATTGGCATCGATATGTGATTC
Found at i:49868547 original size:17 final size:16
Alignment explanation
Indices: 49868508--49868538 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49868498 TGATTGTTTG
*
49868508 GTATGTGATACAAATT
1 GTATATGATACAAATT
49868524 GTATATGATACAAAT
1 GTATATGATACAAAT
49868539 GAATATATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.35
Consensus pattern (16 bp):
GTATATGATACAAATT
Found at i:49874159 original size:46 final size:46
Alignment explanation
Indices: 49874106--49874278 Score: 186
Period size: 46 Copynumber: 3.7 Consensus size: 46
49874096 TTGGGCATCC
* *
49874106 GAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*** * * ** * *
49874152 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACGTCT
* * *
49874199 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
*
49874245 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
49874279 GCGGGTTACA
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
46 67 0.66
47 34 0.34
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCT
Found at i:49874258 original size:93 final size:93
Alignment explanation
Indices: 49874099--49874270 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
49874089 AGAATATTTG
* * *
49874099 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAG
49874164 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
49874192 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAG
49874257 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
49874271 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCTGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:49874833 original size:15 final size:15
Alignment explanation
Indices: 49874815--49874843 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
49874805 AATTCTTGGT
49874815 AATAATTAGCCATTC
1 AATAATTAGCCATTC
49874830 AATAATTAGCCATT
1 AATAATTAGCCATT
49874844 GGAATGGCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.34
Consensus pattern (15 bp):
AATAATTAGCCATTC
Found at i:49883754 original size:27 final size:26
Alignment explanation
Indices: 49883724--49883831 Score: 108
Period size: 27 Copynumber: 4.0 Consensus size: 26
49883714 ATTCTGTTAA
* *
49883724 GTGGCTTTGCCACATTATCTGGTTCTG
1 GTGGCTATGCCACAATATCT-GTTCTG
* *
49883751 GTGGCTATGCCATAAATATCTGTTCTA
1 GTGGCTATGCCA-CAATATCTGTTCTG
*
49883778 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTATGCCACAATATCTGT-TCTG
* * **
49883805 GTGACTCTATCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
49883831 G
1 G
49883832 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.20
27 49 0.71
28 6 0.09
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:49883958 original size:6 final size:6
Alignment explanation
Indices: 49883949--49883992 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
49883939 TTGCATTCAC
* *
49883949 ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
49883993 AATGTTTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 1 0.03
6 30 0.94
7 1 0.03
ACGTcount: A:0.18, C:0.16, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:49885158 original size:42 final size:42
Alignment explanation
Indices: 49885105--49885227 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
49885095 GATTTGTGAT
49885105 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTACATGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTACATGA
*** * * * **
49885147 TTTTGTGTAAGACCCTGTTTGGGACAGTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCG-TACATGA
** * *
49885190 TTACATGTAAGACCACATCTGGGACGTTGGCATTGTAC
1 TTACATGTAAGACCATGTCTGGGACATTGGCATCGTAC
49885228 GAGCTTATGA
Statistics
Matches: 61, Mismatches: 19, Indels: 2
0.74 0.23 0.02
Matches are distributed among these distances:
42 31 0.51
43 30 0.49
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATCGTACATGA
Found at i:49885213 original size:43 final size:43
Alignment explanation
Indices: 49885066--49885222 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
49885056 TGTGTTATCG
* * *
49885066 TGTAAAACCACGTCTAGGACGTTGGCATTGAT-TTGTGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * ** ***
49885110 TGTAAGACCATGTCTGGGACATTGGCATCG-TACATGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
*
49885152 TGTAAGACC-CTGTTTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
*
49885195 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
49885223 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 20, Indels: 13
0.73 0.17 0.11
Matches are distributed among these distances:
42 28 0.32
43 33 0.38
44 26 0.30
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:49905555 original size:30 final size:30
Alignment explanation
Indices: 49905521--49905580 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
49905511 GATGTATGTA
49905521 AGGAAATGTTTTGGTATGATATTATCTTAT
1 AGGAAATGTTTTGGTATGATATTATCTTAT
49905551 AGGAAATGTTTTGGTATGATATTATCTTAT
1 AGGAAATGTTTTGGTATGATATTATCTTAT
49905581 GTTGGCATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.30, C:0.03, G:0.20, T:0.47
Consensus pattern (30 bp):
AGGAAATGTTTTGGTATGATATTATCTTAT
Found at i:49907937 original size:50 final size:49
Alignment explanation
Indices: 49907824--49907999 Score: 167
Period size: 50 Copynumber: 3.5 Consensus size: 49
49907814 CTGGTACGCA
* * **
49907824 TAGTAGCCTGCACTTAGTACTACACATGCGACTAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAACAGTCTAATACACG
* * *
49907873 TAGTAGCTTGCACTTAGAACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CT-AACAGTCTAATACACG
* * *** * *
49907923 TAGTAGCCTACACTTAGTACTACACACGTGA-TCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACTAACAG---TCTAATACACG
49907974 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
49908000 TGCGACCTCA
Statistics
Matches: 103, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 27 0.26
50 39 0.38
51 34 0.33
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACTAACAGTCTAATACACG
Found at i:49907997 original size:101 final size:99
Alignment explanation
Indices: 49907824--49908010 Score: 241
Period size: 101 Copynumber: 1.9 Consensus size: 99
49907814 CTGGTACGCA
* * * * *
49907824 TAGTAGCCTGCACTTAGTACTACACATGCGACTAACAGTCTGGTACACGTAGTAGCTTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACACGCGACTAACAGTCGGGTACACATAGTAGCCTGCACTTA
*
49907889 GAACTACACACGTGACCTCACCATCTAATACACG
66 GAACTACACACGCGACCTCACCATCTAATACACG
* * *
49907923 TAGTAGCCTACACTTAGTACTACACACGTGA-TCACAGTTTTCGGGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTACACTTAGTACTACACACGCGACTAACAG---TCGGGTACACATAGTAGCCTGCAC
* *
49907987 TTAGTACTACACATGCGACCTCAC
63 TTAGAACTACACACGCGACCTCAC
49908011 AATAGATCAT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
98 5 0.07
99 28 0.38
101 41 0.55
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACTAACAGTCGGGTACACATAGTAGCCTGCACTTA
GAACTACACACGCGACCTCACCATCTAATACACG
Found at i:49915407 original size:55 final size:53
Alignment explanation
Indices: 49915282--49915470 Score: 227
Period size: 55 Copynumber: 3.5 Consensus size: 53
49915272 AACTTACCAT
* * *
49915282 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTAT-GAACTCACCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTA-CCTTACCTTATAGAACTCATCAA
* * ** *
49915335 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGTCTTATAGTATCTCATCAA
1 TGCCATGCCTTGACATGGTCTTACATGGTACC-TTACCTTATAG-AACTCATCAA
* * *
49915390 TGCCATGCCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAA
1 TGCCATGCCTTGACATGGTCTTACATG-GTACCTTACCTTATAGAACTCATCAA
*
49915444 TGCCATGCCTTGGCATGGTCTTACATG
1 TGCCATGCCTTGACATGGTCTTACATG
49915471 ATATCCTCAT
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.02
53 33 0.29
54 35 0.30
55 43 0.37
56 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (53 bp):
TGCCATGCCTTGACATGGTCTTACATGGTACCTTACCTTATAGAACTCATCAA
Found at i:49915484 original size:109 final size:108
Alignment explanation
Indices: 49915282--49915484 Score: 291
Period size: 109 Copynumber: 1.9 Consensus size: 108
49915272 AACTTACCAT
* * *
49915282 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTACCTTATGAACTCACCAATGCCATGCCTTG
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATGAACTCACCAATGCCATGCCTTG
* **
49915347 GCATGGTCTTACATGGGACCTTTGTCTTATAGTATCTCATCAA
66 GCATGGTCTTACATGAGACCTTCATCTTATAGTATCTCATCAA
* * *
49915390 TGCCATGCCTTGACATGGTCTTACATGATTTCCTTACCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTAT-GAACTCACCAATGCCATGCCTT
*
49915455 GGCATGGTCTTACATGATATCC-TCATCTTA
65 GGCATGGTCTTACATGAGA-CCTTCATCTTA
49915485 CCAAATGCCA
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
108 38 0.46
109 43 0.52
110 2 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (108 bp):
TGCCATGCCTTGACATGGTCTTACATGATATCCTTACCTTATGAACTCACCAATGCCATGCCTTG
GCATGGTCTTACATGAGACCTTCATCTTATAGTATCTCATCAA
Found at i:49915572 original size:47 final size:46
Alignment explanation
Indices: 49915457--49915578 Score: 181
Period size: 47 Copynumber: 2.6 Consensus size: 46
49915447 CATGCCTTGG
** *
49915457 CATGGTCTTACATGATATCCTCATCTTACCAAATGCCATGTTATAAA
1 CATGGTCTTACATG-TATCCTTGTCTTACCAAATGCCATGTTACAAA
*
49915504 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACAT-GTATCCTTGTCTTACCAAATGCCATGTTACAAA
49915551 CATGGTCTTACATAGTATCCTTGTCTTA
1 CATGGTCTTACAT-GTATCCTTGTCTTA
49915579 GTGCCAATGC
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
47 68 0.99
48 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (46 bp):
CATGGTCTTACATGTATCCTTGTCTTACCAAATGCCATGTTACAAA
Found at i:49916291 original size:30 final size:31
Alignment explanation
Indices: 49916248--49916305 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
49916238 CTAACTCGAA
*
49916248 CTTTGTCAAAATTACAATTTTTCCCCTAAAC
1 CTTTGTCAAAATTACAATTTTGCCCCTAAAC
*
49916279 CTTTG-CAGAATTACAATTTTGCCCCTA
1 CTTTGTCAAAATTACAATTTTGCCCCTA
49916306 GACTCGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.29, C:0.26, G:0.07, T:0.38
Consensus pattern (31 bp):
CTTTGTCAAAATTACAATTTTGCCCCTAAAC
Found at i:49923460 original size:43 final size:43
Alignment explanation
Indices: 49923412--49923494 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
49923402 TGAGGTATGT
*
49923412 AGCATCCAAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCG
1 AGCATCCAAGCTCGTTGAGAGGTCCAAGTTCATAATGGATGCG
* * * * *
49923455 AGCATCCGAGCTTGTTGATAGGTTCGAGTTCATAATGGAT
1 AGCATCCAAGCTCGTTGAGAGGTCCAAGTTCATAATGGAT
49923495 ACGATTCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (43 bp):
AGCATCCAAGCTCGTTGAGAGGTCCAAGTTCATAATGGATGCG
Found at i:49925658 original size:38 final size:38
Alignment explanation
Indices: 49925552--49925669 Score: 166
Period size: 37 Copynumber: 3.1 Consensus size: 38
49925542 CCGGACATAT
* * *
49925552 TCCAGCACGTAGCCTGCGGGACCTTAAGTCCGGATATAA
1 TCCAGCACATAGCCTGC-GGACCCTAAGTCCGGATATCA
*
49925591 TTCCAGCACACAGCCTGCGGACCCT-AGTCCGGATATCA
1 -TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATCA
49925629 TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATACA
1 TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATAT-CA
49925668 TC
1 TC
49925670 ACTGNAATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
37 23 0.32
38 23 0.32
39 10 0.14
40 15 0.21
ACGTcount: A:0.25, C:0.33, G:0.22, T:0.19
Consensus pattern (38 bp):
TCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATCA
Found at i:49929105 original size:40 final size:40
Alignment explanation
Indices: 49929043--49929160 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
49929033 TGGAAAAAAA
*
49929043 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
49929083 TATGACCGGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
49929123 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
49929161 GTTACATCCG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.31
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:49936053 original size:28 final size:28
Alignment explanation
Indices: 49936007--49936075 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
49935997 TTTAAAACCC
*
49936007 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49936034 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
49936062 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
49936076 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:49937726 original size:20 final size:20
Alignment explanation
Indices: 49937703--49937740 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
49937693 CACATCCAAA
*
49937703 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
49937723 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
49937741 GCAAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:49938479 original size:25 final size:25
Alignment explanation
Indices: 49938430--49938482 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
49938420 CCAAATCGGC
*
49938430 TAAAATCTATCTCCTTCTCAATCCT
1 TAAAATCTATCTCCTTATCAATCCT
* **
49938455 TAAAATCTCTCTCCTTATCCCTCCT
1 TAAAATCTATCTCCTTATCAATCCT
49938480 TAA
1 TAA
49938483 TCCATGCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (25 bp):
TAAAATCTATCTCCTTATCAATCCT
Found at i:49943835 original size:27 final size:26
Alignment explanation
Indices: 49943786--49943836 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
49943776 CTATTTGATG
* *
49943786 AGCTATATGTACATATATATATATTC
1 AGCTATATGTAAAAATATATATATTC
49943812 AGCTATATGGTAAAAATATATATAT
1 AGCTATAT-GTAAAAATATATATAT
49943837 GAAAATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (26 bp):
AGCTATATGTAAAAATATATATATTC
Found at i:49944418 original size:19 final size:19
Alignment explanation
Indices: 49944396--49944434 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
49944386 ATAATGTCGG
49944396 TGAGATACTATTCGGGCCT
1 TGAGATACTATTCGGGCCT
49944415 TGAGATACTATTCGGGCCT
1 TGAGATACTATTCGGGCCT
49944434 T
1 T
49944435 CGAGCCTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.33
Consensus pattern (19 bp):
TGAGATACTATTCGGGCCT
Found at i:49946322 original size:21 final size:21
Alignment explanation
Indices: 49946296--49946345 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
49946286 TATAGCAAGG
* *
49946296 GCGTGTCCTAAAGTTACACGG
1 GCGTGTCCTAAAGTCACACGA
*
49946317 GTGTGTCCTAAAGTCACACGA
1 GCGTGTCCTAAAGTCACACGA
49946338 GCGTGTCC
1 GCGTGTCC
49946346 CTTAGACTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.22, C:0.26, G:0.28, T:0.24
Consensus pattern (21 bp):
GCGTGTCCTAAAGTCACACGA
Found at i:49947165 original size:25 final size:24
Alignment explanation
Indices: 49947129--49947180 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
49947119 CTCAAACACA
*
49947129 GCTCTTTATGAGCGTCTTGATATAG
1 GCTCTTTATGAGCGTCCTGATAT-G
*
49947154 GCTCTTCT-TGAGCTTCCTGATATG
1 GCTCTT-TATGAGCGTCCTGATATG
49947178 GCT
1 GCT
49947181 TGCTTGAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 4 0.17
25 19 0.79
26 1 0.04
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGATATG
Found at i:49952836 original size:46 final size:47
Alignment explanation
Indices: 49952767--49952899 Score: 175
Period size: 46 Copynumber: 2.9 Consensus size: 47
49952757 ATAATCTCAC
*
49952767 CCATAATGAACTCGGAACGCAACTCAACGAGCTCAGG-TG-TTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCAGGATGCTT-GCAT
* *
49952813 CCATAATGAACTCGAAACACAACTCAACGAGTTC-GGATGCTTGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCAGGATGCTTGCAT
* *
49952859 CCATAGGTGAACTTGGAACGCAACTCAACGAGTTCA-GATGC
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTCAGGATGC
49952900 CTCATAATTC
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
45 2 0.03
46 42 0.55
47 32 0.42
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.20
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCAGGATGCTTGCAT
Found at i:49952888 original size:47 final size:47
Alignment explanation
Indices: 49952767--49952944 Score: 175
Period size: 47 Copynumber: 3.8 Consensus size: 47
49952757 ATAATCTCAC
*
49952767 CCATAATGAACTCGGAACGCAACTCAACGAGCTCAGG-TG-TTCGCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTC-GGATGCTTCGCAT
* *
49952813 CCATAATGAACTCGAAACACAACTCAACGAGTTCGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
* * * * **
49952859 CCATAGGTGAACTTGGAACGCAACTCAACGAGTTCAGATGCCTCATAAT
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTC-GCAT
* * * * *
49952908 TC-TCACGAACTCGGACCACAACTCAACGAGTTCGGAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGAT
49952945 CTTAATTTCC
Statistics
Matches: 108, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 42 0.39
47 60 0.56
48 1 0.01
49 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.21
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTCGGATGCTTCGCAT
Found at i:49956982 original size:27 final size:27
Alignment explanation
Indices: 49956944--49957154 Score: 271
Period size: 27 Copynumber: 7.8 Consensus size: 27
49956934 GCTAACATAG
* * *
49956944 AATTACCATTTTACCGTTGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* *
49956971 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
* *
49956998 AATTACCGTTTCACCCTCGATTTATAA
1 AATTACCATTTTACCCTCGATTTATAA
*
49957025 AATTACCATTTTACCCTCGATTTATAG
1 AATTACCATTTTACCCTCGATTTATAA
**
49957052 AATTACCATTTTACCCTCGATTTCCAA
1 AATTACCATTTTACCCTCGATTTATAA
* *
49957079 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCATTTTACCCTCGATTTATAA
*
49957106 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCATTTTACCCTCGA-TTTATAA
* *
49957133 AATTACCGTTTTACCCTTGATT
1 AATTACCATTTTACCCTCGATT
49957155 GTGAAATTAC
Statistics
Matches: 166, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 164 0.99
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTTATAA
Found at i:49957022 original size:54 final size:54
Alignment explanation
Indices: 49956940--49957154 Score: 306
Period size: 54 Copynumber: 4.0 Consensus size: 54
49956930 CGAAGCTAAC
* * * *
49956940 ATAGAATTACCATTTTACCGTTGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
* * * *
49956994 ATAGAATTACCGTTTCACCCTCGATTTATAAAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
*
49957048 ATAGAATTACCATTTTACCCTCGATTTCCAAAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
* * *
49957102 ACAAAATTACCATTTTACCCTC-AGTTTACAAAATTACCGTTTTACCCTTGATT
1 ATAGAATTACCATTTTACCCTCGA-TTTACAAAATTACCGTTTTACCCTCGATT
49957155 GTGAAATTAC
Statistics
Matches: 145, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.01
54 144 0.99
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTT
Found at i:49957083 original size:81 final size:81
Alignment explanation
Indices: 49956944--49957154 Score: 307
Period size: 81 Copynumber: 2.6 Consensus size: 81
49956934 GCTAACATAG
* * * *
49956944 AATTACCATTTTACCGTTGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTT
*
49957009 CACCCTCGATTTATAA
66 CACCCTCGATTTACAA
* *
49957025 AATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTCCAAAATTACCGTTT
1 AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTT
*
49957090 TACCCTCGATTTACAA
66 CACCCTCGATTTACAA
* * *
49957106 AATTACCATTTTACCCTC-AGTTTACAAAATTACCGTTTTACCCTTGATT
1 AATTACCATTTTACCCTCGA-TTTATAGAATTACCGTTTTACCCTCGATT
49957155 GTGAAATTAC
Statistics
Matches: 117, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 1 0.01
81 116 0.99
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.40
Consensus pattern (81 bp):
AATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTT
CACCCTCGATTTACAA
Found at i:49957188 original size:27 final size:27
Alignment explanation
Indices: 49957153--49957363 Score: 302
Period size: 27 Copynumber: 7.8 Consensus size: 27
49957143 TTACCCTTGA
* *
49957153 TTGTGAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
49957180 TTGTAAAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
49957207 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
49957234 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
*
49957261 TTGTAAAATTACTAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* *
49957288 TTGTAAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
49957315 TTGTAAAATTACCAAAATACCCCT-GA
1 TTGTAAAATTACCAAAATACCCCTAGT
*
49957341 TT-TACAAAGTTACAAAAATACCC
1 TTGTA-AAA-TTACCAAAATACCC
49957364 TTGACTTTCA
Statistics
Matches: 168, Mismatches: 12, Indels: 8
0.89 0.06 0.04
Matches are distributed among these distances:
25 2 0.01
26 9 0.05
27 153 0.91
28 4 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:49957414 original size:27 final size:27
Alignment explanation
Indices: 49957375--49957426 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
49957365 TGACTTTCAA
49957375 AAAATTATAGAAACACCATTAGTTTAC
1 AAAATTATAGAAACACCATTAGTTTAC
* *
49957402 AAAATTACT-GAAATACCATTGGTTT
1 AAAATTA-TAGAAACACCATTAGTTT
49957427 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (27 bp):
AAAATTATAGAAACACCATTAGTTTAC
Found at i:49958176 original size:25 final size:25
Alignment explanation
Indices: 49958147--49958194 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
49958137 TTATAATGTG
* * *
49958147 AAAATGACTATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
49958172 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
49958195 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:49958384 original size:52 final size:51
Alignment explanation
Indices: 49958306--49958428 Score: 196
Period size: 52 Copynumber: 2.4 Consensus size: 51
49958296 GAGGAAGTGC
*
49958306 AAAAGGGCTTATGCCCTAGTTTATTGAAAAGGGCTTAT-CCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCC-CAGTTTACCG
*
49958358 AAAAGAGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
49958409 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
49958429 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
50 10 0.15
51 20 0.30
52 37 0.55
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:49958403 original size:25 final size:26
Alignment explanation
Indices: 49958306--49958428 Score: 162
Period size: 26 Copynumber: 4.8 Consensus size: 26
49958296 GAGGAAGTGC
* **
49958306 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
49958332 AAAAGGGCTTAT-CCCTCAGTTTACCG
1 AAAAGGGCTTATGCCC-CAGTTTACCG
* **
49958358 AAAAGAGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
49958384 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
49958409 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
49958429 ATTAAAGAGG
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
25 36 0.42
26 47 0.55
27 3 0.03
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:49958632 original size:42 final size:42
Alignment explanation
Indices: 49958573--49958664 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
49958563 TAGTCTCCCT
* *
49958573 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATATGATATTG
*
49958615 AAATGGGCTTGCATACATTCATTGATATTTCATATGTTATTG
1 AAATGGGCTTGCATACATTCATTGATATTTCATATGATATTG
*
49958657 ATATGGGC
1 AAATGGGC
49958665 CTGTGGGCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGATATTTCATATGATATTG
Found at i:49958723 original size:31 final size:31
Alignment explanation
Indices: 49958688--49958797 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
49958678 CGTTTACAAT
*
49958688 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
49958719 AAAGGCTTCGGCCCAGTGATATTATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
49958750 AAAGGCTTCAGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
49958781 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
49958798 AACTGTTAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:49963629 original size:17 final size:18
Alignment explanation
Indices: 49963607--49963648 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
49963597 CATGTTTACA
49963607 TGGTTGAGTA-AATGA-TG
1 TGGTTGA-TATAATGATTG
*
49963624 TGGTTGATATATTGATTG
1 TGGTTGATATAATGATTG
49963642 TGGTTGA
1 TGGTTGA
49963649 CATATTCAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 11 0.50
18 9 0.41
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (18 bp):
TGGTTGATATAATGATTG
Found at i:49967289 original size:78 final size:81
Alignment explanation
Indices: 49967169--49967350 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
49967159 TACTCGTTCA
* *
49967169 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
49967232 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
49967248 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
49967311 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
49967327 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
49967351 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:49967350 original size:40 final size:40
Alignment explanation
Indices: 49967167--49967350 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
49967157 GCTACTCGTT
*
49967167 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
49967207 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
49967247 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
49967285 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49967326 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49967351 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49969642 original size:41 final size:41
Alignment explanation
Indices: 49969585--49969667 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
49969575 TTTCGGGACC
49969585 GCTAAACTGAGTCACCGAAATGTTTGAACGTAATATTTATT
1 GCTAAACTGAGTCACCGAAATGTTTGAACGTAATATTTATT
49969626 GCTAAACTGAGTCACCGAAATGTTTGAACGTAATATTTATT
1 GCTAAACTGAGTCACCGAAATGTTTGAACGTAATATTTATT
49969667 G
1 G
49969668 TCTAGAATAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34
Consensus pattern (41 bp):
GCTAAACTGAGTCACCGAAATGTTTGAACGTAATATTTATT
Found at i:49971241 original size:29 final size:28
Alignment explanation
Indices: 49971208--49971310 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
49971198 GGGACGAGAT
* *
49971208 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
49971237 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
49971266 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
49971295 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
49971311 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:49978499 original size:78 final size:81
Alignment explanation
Indices: 49978379--49978560 Score: 257
Period size: 78 Copynumber: 2.3 Consensus size: 81
49978369 TACTCGTTCA
* *
49978379 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
*
49978442 ATTTAGTAAC-TCGCAC
65 ATTTAGTAACTTAGCAC
**
49978458 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
49978521 TTTAGTCACTTAGCAC
66 TTTAGTAACTTAGCAC
*
49978537 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
49978561 CATCATTCGA
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
77 3 0.03
78 49 0.53
79 29 0.32
80 11 0.12
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TTTAGTAACTTAGCAC
Found at i:49978560 original size:40 final size:40
Alignment explanation
Indices: 49978377--49978560 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
49978367 GCTACTCGTT
*
49978377 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
49978417 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
49978457 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
49978495 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
49978536 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
49978561 CATCATTCGA
Statistics
Matches: 129, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
38 26 0.20
39 21 0.16
40 69 0.53
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:49979846 original size:20 final size:20
Alignment explanation
Indices: 49979823--49979861 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
49979813 GTTTTCATCA
*
49979823 TTTTCTTTCTCC-TTTCTTT
1 TTTTTTTTCTCCATTTCTTT
*
49979842 TTTTTTTTTTCCATTTCTTT
1 TTTTTTTTCTCCATTTCTTT
49979862 ATTACTACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCTCCATTTCTTT
Found at i:49982512 original size:7 final size:6
Alignment explanation
Indices: 49982491--49982548 Score: 53
Period size: 6 Copynumber: 9.5 Consensus size: 6
49982481 CATTAGCTTC
* * * * *
49982491 TTTTAT TTTTAT TTTTAC TTTTAT GTTTAT GTTTCT TTTTCT TCTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT T-TTTAT
*
49982540 TTCTAT TTT
1 TTTTAT TTT
49982549 CTTTTTGATT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.12, C:0.09, G:0.03, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:49982542 original size:17 final size:17
Alignment explanation
Indices: 49982522--49982565 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
49982512 TATGTTTATG
49982522 TTTCTTTTTCTTCTTT-A
1 TTTCTTTTTCTT-TTTGA
49982539 TTTCTATTTTCTTTTTGA
1 TTTCT-TTTTCTTTTTGA
49982557 TTCTCTTTT
1 TT-TCTTTT
49982566 ACTGTGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 8 0.33
18 13 0.54
19 3 0.12
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (17 bp):
TTTCTTTTTCTTTTTGA
Found at i:49983386 original size:103 final size:103
Alignment explanation
Indices: 49983190--49983434 Score: 271
Period size: 103 Copynumber: 2.4 Consensus size: 103
49983180 CACGGCTAAG
* * * * *
49983190 AACATGGGTATGTG-CCTAGGCCGTGTAACTCACTGTTTGTGGCACAAGACCATACGGATAAGGA
1 AACACGGG-ATGTGTCC-AGGCCGTGTAATTCATTGTTTGTGGCACAAGACAACACGGATAAGGA
* * *
49983254 CACGGGGATGTGTCCAGGTCGTATGAGTCACATGGGCAGA
64 CACGGGCATGTGTCCAGGTCGTATGAGTCACACGAGCAGA
* * **
49983294 AACACGGTG-TGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGGCAACACGGCTTGGGAC
1 AACACGG-GATGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGACAACACGGATAAGGAC
* * *
49983358 ACGGGCTTGTGTCTAGGTCGTGTGAGTCACACGAGCAGA
65 ACGGGCATGTGTCCAGGTCGTATGAGTCACACGAGCAGA
* *
49983397 AACATGGGCATGTGTCCAGGCCGTATAACTT-ATTGTTT
1 AACACGGG-ATGTGTCCAGGCCGTGTAA-TTCATTGTTT
49983435 ATGCTTCGAA
Statistics
Matches: 119, Mismatches: 17, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
102 1 0.01
103 83 0.70
104 32 0.27
105 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (103 bp):
AACACGGGATGTGTCCAGGCCGTGTAATTCATTGTTTGTGGCACAAGACAACACGGATAAGGACA
CGGGCATGTGTCCAGGTCGTATGAGTCACACGAGCAGA
Found at i:49985122 original size:70 final size:66
Alignment explanation
Indices: 49985001--49985132 Score: 167
Period size: 70 Copynumber: 1.9 Consensus size: 66
49984991 ATAAACAATA
* * ** *
49985001 TAATGGTTTTGCTTTTAACTTAATGGATAAACATTTATCGAAATGATGTAGTTTTGCCTTTTATC
1 TAATGGTTTTGCTTTTAACTTAAAGGATAAACATTTATCAAAACAACGTAGTTTTGCCTTTTATC
49985066 T
66 T
49985067 TAATGGTTTTGACTTTTAACTTTACAAAAGG-TAAACATTTATCAAAACAACGTAGTTTTGCCTT
1 TAATGGTTTTG-CTTTTAAC-TT---AAAGGATAAACATTTATCAAAACAACGTAGTTTTGCCTT
49985131 TT
61 TT
49985133 CTTATTCAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
66 11 0.20
67 8 0.14
68 2 0.04
70 31 0.55
71 4 0.07
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (66 bp):
TAATGGTTTTGCTTTTAACTTAAAGGATAAACATTTATCAAAACAACGTAGTTTTGCCTTTTATC
T
Found at i:49993435 original size:27 final size:26
Alignment explanation
Indices: 49993398--49993509 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
49993388 AGCATGGTTG
* *
49993398 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
49993424 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
49993452 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
49993479 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
49993506 CCAG
1 CCAG
49993510 GAAGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:49993490 original size:54 final size:54
Alignment explanation
Indices: 49993398--49993509 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
49993388 AGCATGGTTG
* *
49993398 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
49993452 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
49993506 CCAG
1 CCAG
49993510 GAAGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:49998842 original size:44 final size:44
Alignment explanation
Indices: 49998777--49998861 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
49998767 TTGATATCTC
* *
49998777 AAAGTCCATGGTTGTACCATGGCAATTAAAGAAGAATTGACCGA
1 AAAGTCCATGGTTATAACATGGCAATTAAAGAAGAATTGACCGA
* * *
49998821 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGAC
1 AAAGTCCATGGTT-ATAACATGGCAATTAAAGAAGAATTGAC
49998862 AGTTAAGGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAAGAAGAATTGACCGA
Found at i:49999062 original size:44 final size:47
Alignment explanation
Indices: 49999000--49999118 Score: 199
Period size: 44 Copynumber: 2.6 Consensus size: 47
49998990 GCATTGGCAC
*
49999000 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
49999047 T-A-A-AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
49999091 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
49999119 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
44 42 0.62
45 2 0.03
46 2 0.03
47 22 0.32
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:49999163 original size:54 final size:54
Alignment explanation
Indices: 49999097--49999304 Score: 249
Period size: 54 Copynumber: 3.9 Consensus size: 54
49999087 TTGGTAAGAT
* * *
49999097 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * *
49999151 AAGGAAACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGG-C
* * ** *
49999207 AAGG-TCCCATGTAAGGCCATGCCAAGGGATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * * *
49999259 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTGAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC
49999305 AAAAAGGAAA
Statistics
Matches: 130, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
52 4 0.03
53 40 0.31
54 41 0.32
55 41 0.32
56 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:49999302 original size:108 final size:108
Alignment explanation
Indices: 49999105--49999318 Score: 322
Period size: 108 Copynumber: 2.0 Consensus size: 108
49999095 ATAAGGATAT
*
49999105 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
* * *
49999170 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
66 ATGTCAAGACATGGCAATGATGAGTT-CAAAAAGGAAAAGGTCC
* * * * *
49999214 CATGTAAGGCCATGCCAAGGGATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
*
49999278 ATGTCAAGACATGGCAATGGTGAGTTCAAAAAGGAAAAGGT
66 ATGTCAAGACATGGCAATGATGAGTTCAAAAAGGAAAAGGT
49999319 TCCTGAGTAA
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
107 13 0.14
108 48 0.51
109 34 0.36
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.21
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGGCAATGATGAGTTCAAAAAGGAAAAGGTCC
Found at i:49999428 original size:16 final size:17
Alignment explanation
Indices: 49999407--49999439 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
49999397 CTTATTTAAT
49999407 ATTGAGATTGT-AAGTA
1 ATTGAGATTGTCAAGTA
49999423 ATTGAGATTGTCAAGTA
1 ATTGAGATTGTCAAGTA
49999440 CTAAGTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.36, C:0.03, G:0.24, T:0.36
Consensus pattern (17 bp):
ATTGAGATTGTCAAGTA
Found at i:50002715 original size:38 final size:38
Alignment explanation
Indices: 50002673--50002851 Score: 223
Period size: 38 Copynumber: 4.7 Consensus size: 38
50002663 CCAACACTAG
* * *
50002673 GCCTGCGGGATTTATCCCGAATATAATACCAGCATGAA
1 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
** *
50002711 GCCTGCGGGATTTAACCCGGATATTTTACCAGTACGAA
1 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
* * *
50002749 GCCTACGGGTCTTTAAGCCCGGATATAATACCAGCATGAA
1 GCCTGCGGG-ATTTAA-CCCGGATATAATACCAGCACGAA
* *
50002789 GCCTGCGGGATTTAATCTGGATATAATACCAGCACGAA
1 GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
* *
50002827 TCCTGCGAGATTTAACCCGGATATA
1 GCCTGCGGGATTTAACCCGGATATA
50002852 CATCGAATAT
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
38 81 0.69
39 10 0.08
40 27 0.23
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (38 bp):
GCCTGCGGGATTTAACCCGGATATAATACCAGCACGAA
Found at i:50002789 original size:78 final size:76
Alignment explanation
Indices: 50002681--50002851 Score: 225
Period size: 78 Copynumber: 2.2 Consensus size: 76
50002671 AGGCCTGCGG
* * ** *
50002681 GATTTATCCCGAATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATTTTACCAGTAC
1 GATTTAACCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCAC
*
50002746 GAAGCCTACGG
66 GAAGCCTACGA
* * *
50002757 GTCTTTAAGCCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAATCTGGATATAATACCAGC
1 G-ATTTAA-CCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATAATACCAGC
* *
50002822 ACGAATCCTGCGA
64 ACGAAGCCTACGA
50002835 GATTTAACCCGGATATA
1 GATTTAACCCGGATATA
50002852 CATCGAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
76 11 0.14
77 9 0.11
78 61 0.75
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (76 bp):
GATTTAACCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAACCCGGATATAATACCAGCAC
GAAGCCTACGA
Found at i:50007445 original size:17 final size:16
Alignment explanation
Indices: 50007419--50007450 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
50007409 CACGAAAAAG
50007419 TAAACTTAGTAAGCTA
1 TAAACTTAGTAAGCTA
50007435 TAAAGCTTAGTAAGCT
1 TAAA-CTTAGTAAGCT
50007451 CTTATAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (16 bp):
TAAACTTAGTAAGCTA
Found at i:50011394 original size:47 final size:47
Alignment explanation
Indices: 50011325--50011648 Score: 522
Period size: 47 Copynumber: 6.9 Consensus size: 47
50011315 AAATTTTTAA
50011325 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
50011372 AATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
50011419 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* * * *
50011466 AATGGCCCATGTGATGAATGTGGAAGCGTATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
50011513 AATGGCCGATGTGATGAATGTGAAAGTGTATATAAGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
50011560 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGGTAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* * * * *
50011607 AGTGGCCGACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
50011649 ATTCCGAAGG
Statistics
Matches: 255, Mismatches: 22, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 255 1.00
ACGTcount: A:0.33, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
Found at i:50013170 original size:40 final size:40
Alignment explanation
Indices: 50013063--50013225 Score: 238
Period size: 40 Copynumber: 4.1 Consensus size: 40
50013053 GAGAATTGAG
* *
50013063 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
50013103 AGTGATGTA-CCCGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
50013142 AGTGATGTATCTGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
50013182 AGTAATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
50013222 AGTG
1 AGTG
50013226 TCGTGTATTC
Statistics
Matches: 110, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
39 38 0.35
40 72 0.65
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:50015890 original size:47 final size:47
Alignment explanation
Indices: 50015821--50016192 Score: 600
Period size: 47 Copynumber: 7.9 Consensus size: 47
50015811 AAATTTTTAA
50015821 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
50015868 AATGGCCCATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
50015915 AATGGCCAATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCC
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
50015962 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* * * *
50016009 AATGGCCCATGTGATGAATGTGGAAGCGTATATATGTGATAAGGCCT
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
*
50016056 AATGGCCAATGTGATGAATGTGAAAGTGTATATAAGTGATAAGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* *
50016103 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGGTAGGGCCG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
* * * * *
50016150 AGTGGCCGACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50016193 TTCCGAAGGG
Statistics
Matches: 299, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 299 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCG
Found at i:50018794 original size:22 final size:21
Alignment explanation
Indices: 50018769--50018815 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
50018759 TAGAAAGAAT
50018769 AAAATAATGAAAAAAAAAAAGG
1 AAAAT-ATGAAAAAAAAAAAGG
** *
50018791 AAAATATGATGAAAACAAAGG
1 AAAATATGAAAAAAAAAAAGG
50018812 AAAA
1 AAAA
50018816 AAAAAAGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (21 bp):
AAAATATGAAAAAAAAAAAGG
Found at i:50019058 original size:7 final size:7
Alignment explanation
Indices: 50019046--50019070 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
50019036 GTTGTCTTCT
50019046 TGTTTGA
1 TGTTTGA
50019053 TGTTTGA
1 TGTTTGA
50019060 TGTTTGA
1 TGTTTGA
50019067 TGTT
1 TGTT
50019071 GTGGTGATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.60
Consensus pattern (7 bp):
TGTTTGA
Found at i:50020000 original size:27 final size:28
Alignment explanation
Indices: 50019944--50020013 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
50019934 AAATTTGTAC
50019944 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
* *
50019972 AGCACTAGGTGTGCGAG-TTGATTTTAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
50019999 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
50020014 GACTCACTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:50023100 original size:40 final size:40
Alignment explanation
Indices: 50023045--50023209 Score: 208
Period size: 40 Copynumber: 4.2 Consensus size: 40
50023035 ATGATGCCCA
*
50023045 GGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
50023085 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
* * *** *
50023125 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
* ** *
50023165 GGTTAAGACCCGAAGGCAATT-GTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCG
50023204 GGCTAA
1 GGCTAA
50023210 ATTCCGAAGA
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 5 0.05
40 100 0.93
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATATCCG
Found at i:50026605 original size:19 final size:20
Alignment explanation
Indices: 50026571--50026611 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
50026561 CTAGACAGGT
* *
50026571 AACTTAGGAAATTTTTAGAA
1 AACTTAGGAAAATTTTACAA
50026591 AACTTA-GAAAATTTTACAA
1 AACTTAGGAAAATTTTACAA
50026610 AA
1 AA
50026612 TATAGGGGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (20 bp):
AACTTAGGAAAATTTTACAA
Found at i:50031684 original size:71 final size:72
Alignment explanation
Indices: 50031602--50031763 Score: 238
Period size: 71 Copynumber: 2.3 Consensus size: 72
50031592 CATCATGTGT
* * * **
50031602 ACAAGAAAGCTACGAGACACCCTGTA-GTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
50031666 CATGTAG
66 CATGTAG
* * *
50031673 ACAAGAGAGCTACGTGA-AAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACAC
1 ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
50031737 CATGTAG
66 CATGTAG
50031744 ACAAGAGAGCTACGAGACAA
1 ACAAGAGAGCTACGAGACAA
50031764 ATCGGTTAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
70 3 0.04
71 75 0.94
72 2 0.03
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.17
Consensus pattern (72 bp):
ACAAGAGAGCTACGAGACAACATAAATGTAGCTAGGTCACATGCGTGATTCCAAGTGAAGGACAC
CATGTAG
Found at i:50036465 original size:12 final size:12
Alignment explanation
Indices: 50036370--50036466 Score: 50
Period size: 12 Copynumber: 8.4 Consensus size: 12
50036360 CATTATTTTA
50036370 ATTTAATATTAA-
1 ATTTAAT-TTAAT
50036382 ATTTAATTTAAT
1 ATTTAATTTAAT
*
50036394 ACTT-ATCTTAAT
1 ATTTAAT-TTAAT
*
50036406 A-GT-ATTT--T
1 ATTTAATTTAAT
50036414 A-TTAATTTAAT
1 ATTTAATTTAAT
* *
50036425 ATTCAA-GTAAT
1 ATTTAATTTAAT
50036436 AATCTTAATATTAA-
1 -AT-TTAAT-TTAAT
50036450 ATTTAATTTAAT
1 ATTTAATTTAAT
50036462 ATTTA
1 ATTTA
50036467 TCTTGAAAAC
Statistics
Matches: 67, Mismatches: 7, Indels: 22
0.70 0.07 0.23
Matches are distributed among these distances:
8 3 0.04
9 4 0.06
10 2 0.03
11 19 0.28
12 31 0.46
13 5 0.07
15 3 0.04
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (12 bp):
ATTTAATTTAAT
Found at i:50044049 original size:40 final size:40
Alignment explanation
Indices: 50043905--50044032 Score: 159
Period size: 40 Copynumber: 3.2 Consensus size: 40
50043895 AGCCTTCAAG
* * * * *
50043905 GCATTAGTGGCACTTTTTCAAGAAACGCCGCTATAGATCAA
1 GCATTAGCGGCGCTTTTTGAA-AAACACCGCTATAGATCGA
* *
50043946 G-ATTTAGCTGCGCTTTTTGAAAAACACTGCTATAGATCGA
1 GCA-TTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
*
50043986 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGGTCGA
1 GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
50044026 GCATTAG
1 GCATTAG
50044033 TGGTGTTTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
40 59 0.79
41 16 0.21
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTGAAAAACACCGCTATAGATCGA
Found at i:50044455 original size:7 final size:7
Alignment explanation
Indices: 50044434--50044633 Score: 78
Period size: 7 Copynumber: 27.4 Consensus size: 7
50044424 TTAATTATCA
*
50044434 TTATAGT
1 TTATGGT
*
50044441 TTAAGGT
1 TTATGGT
50044448 TTATGGT
1 TTATGGT
*
50044455 TTAGGGT
1 TTATGGT
*
50044462 TTAGGGTTT
1 TTATGG--T
50044471 ATTATGAGT
1 -TTATG-GT
* **
50044480 TAATATT
1 TTATGGT
*
50044487 TTAAGGT
1 TTATGGT
*
50044494 TTATGGA
1 TTATGGT
50044501 TTATGGGT
1 TTAT-GGT
* *
50044509 TTAAGAT
1 TTATGGT
*
50044516 TTAAGGT
1 TTATGGT
* *
50044523 TAAGGAGT
1 TTATG-GT
50044531 TTATGGT
1 TTATGGT
50044538 TTATGAGT
1 TTATG-GT
* **
50044546 TAATATT
1 TTATGGT
*
50044553 TTAAGGT
1 TTATGGT
*
50044560 TTATGGA
1 TTATGGT
50044567 TTATGGAT
1 TTATGG-T
* *
50044575 TTAGGGG
1 TTATGGT
50044582 TTATGGT
1 TTATGGT
50044589 TTATGGT
1 TTATGGT
**
50044596 TTAAAGT
1 TTATGGT
*
50044603 TGA-GGT
1 TTATGGT
*
50044609 TTAAGGTT
1 TTATGG-T
*
50044617 TTAGGGT
1 TTATGGT
50044624 TTATGGT
1 TTATGGT
50044631 TTA
1 TTA
50044634 GAGGTTATGG
Statistics
Matches: 140, Mismatches: 43, Indels: 20
0.69 0.21 0.10
Matches are distributed among these distances:
6 4 0.03
7 100 0.71
8 29 0.21
9 2 0.01
10 4 0.03
11 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:50044505 original size:29 final size:29
Alignment explanation
Indices: 50044471--50044571 Score: 103
Period size: 29 Copynumber: 3.2 Consensus size: 29
50044461 TTTAGGGTTT
50044471 ATTATGAGTTAATATTTTAAGGTTTATGG
1 ATTATGAGTTAATATTTTAAGGTTTATGG
* *
50044500 ATTATGGGTTTAAGATTTAAGGTTAAGGAGTTTATGG
1 ATTATGAG-TTAATA-TT----TTAA-G-GTTTATGG
*
50044537 TTTATGAGTTAATATTTTAAGGTTTATGG
1 ATTATGAGTTAATATTTTAAGGTTTATGG
50044566 ATTATG
1 ATTATG
50044572 GATTTAGGGG
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
29 20 0.34
30 6 0.10
31 6 0.10
35 6 0.10
36 6 0.10
37 14 0.24
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.47
Consensus pattern (29 bp):
ATTATGAGTTAATATTTTAAGGTTTATGG
Found at i:50044632 original size:22 final size:22
Alignment explanation
Indices: 50044440--50044639 Score: 97
Period size: 22 Copynumber: 9.0 Consensus size: 22
50044430 ATCATTATAG
*
50044440 TTTAAGGTTTATGGTTT-AGGG
1 TTTAAGGTTTATGGTTTAAGGT
* **
50044461 TTTAGGGTTTATTATGAG-TTAATAT
1 TTTAAGG--T-TTATG-GTTTAAGGT
* * *
50044486 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGTTTATGGTTTAAGGT
* * *
50044508 TTTAAGATTTAAGG-TTAAGGAG
1 TTTAAGGTTTATGGTTTAAGG-T
* **
50044530 TTTATGGTTTATGAG-TTAATAT
1 TTTAAGGTTTATG-GTTTAAGGT
* * *
50044552 TTTAAGGTTTATGGATTATGGA
1 TTTAAGGTTTATGGTTTAAGGT
* * *
50044574 TTTAGGGGTTATGGTTTATGG-
1 TTTAAGGTTTATGGTTTAAGGT
* *
50044595 TTTAAAGTTGA-GGTTTAAGGT
1 TTTAAGGTTTATGGTTTAAGGT
*
50044616 TTTAGGGTTTATGGTTTAGAGGT
1 TTTAAGGTTTATGGTTTA-AGGT
50044639 T
1 T
50044640 ATGGGTTAGG
Statistics
Matches: 133, Mismatches: 34, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
20 8 0.06
21 28 0.21
22 70 0.53
23 12 0.09
24 7 0.05
25 8 0.06
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.47
Consensus pattern (22 bp):
TTTAAGGTTTATGGTTTAAGGT
Found at i:50044645 original size:22 final size:22
Alignment explanation
Indices: 50044606--50044680 Score: 84
Period size: 22 Copynumber: 3.4 Consensus size: 22
50044596 TTAAAGTTGA
* *
50044606 GGTTTAAGGTTTTAGGGTTTA-T
1 GGTTTAAGGTTAT-GGGTTTAGG
50044628 GGTTTAGAGGTTATGGG-TTAGG
1 GGTTTA-AGGTTATGGGTTTAGG
50044650 GGTTTAAGGGTTATGGG-TTAGG
1 GGTTTAA-GGTTATGGGTTTAGG
50044672 GGTTTAAGG
1 GGTTTAAGG
50044681 GTTAAGGGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.12
22 36 0.75
23 6 0.12
ACGTcount: A:0.19, C:0.00, G:0.41, T:0.40
Consensus pattern (22 bp):
GGTTTAAGGTTATGGGTTTAGG
Found at i:50044646 original size:7 final size:7
Alignment explanation
Indices: 50044617--50044692 Score: 53
Period size: 7 Copynumber: 10.4 Consensus size: 7
50044607 GTTTAAGGTT
*
50044617 TTAGGGT
1 TTAGGGG
* *
50044624 TTATGGT
1 TTAGGGG
*
50044631 TTAGAGG
1 TTAGGGG
*
50044638 TTATGGG
1 TTAGGGG
50044645 TTAGGGG
1 TTAGGGG
*
50044652 TTTAAGGG
1 -TTAGGGG
*
50044660 TTATGGG
1 TTAGGGG
50044667 TTAGGGG
1 TTAGGGG
*
50044674 TTTAAGGG
1 -TTAGGGG
50044682 TTAAGGGG
1 TT-AGGGG
50044690 TTA
1 TTA
50044693 AGGCATTAAG
Statistics
Matches: 54, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
7 36 0.67
8 18 0.33
ACGTcount: A:0.20, C:0.00, G:0.42, T:0.38
Consensus pattern (7 bp):
TTAGGGG
Found at i:50044681 original size:22 final size:22
Alignment explanation
Indices: 50044628--50044728 Score: 98
Period size: 22 Copynumber: 4.5 Consensus size: 22
50044618 TAGGGTTTAT
50044628 GGTTT-AGAGGTTATGGGTTAGG
1 GGTTTAAG-GGTTATGGGTTAGG
50044650 GGTTTAAGGGTTATGGGTTAGG
1 GGTTTAAGGGTTATGGGTTAGG
* *
50044672 GGTTTAAGGGTTAAGGGGTTAAG
1 GGTTTAAGGGTT-ATGGGTTAGG
** ** *
50044695 GCATTAAGGGGACAAGGGTTAGG
1 GGTTTAA-GGGTTATGGGTTAGG
50044718 GGTTT-AGGGTT
1 GGTTTAAGGGTT
50044729 TAGGATAATT
Statistics
Matches: 64, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
21 3 0.05
22 32 0.50
23 26 0.41
24 3 0.05
ACGTcount: A:0.22, C:0.02, G:0.45, T:0.32
Consensus pattern (22 bp):
GGTTTAAGGGTTATGGGTTAGG
Found at i:50048835 original size:18 final size:18
Alignment explanation
Indices: 50048788--50048836 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
50048778 GTTTAAATTT
*
50048788 CATAACTTACAAAACTCA
1 CATAACTTACATAACTCA
* * *
50048806 CATACCTCACATAACTTA
1 CATAACTTACATAACTCA
*
50048824 GATAACTTACATA
1 CATAACTTACATA
50048837 TATAATACAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.45, C:0.27, G:0.02, T:0.27
Consensus pattern (18 bp):
CATAACTTACATAACTCA
Found at i:50054356 original size:21 final size:21
Alignment explanation
Indices: 50054330--50054369 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
50054320 AAATTGCTCA
*
50054330 ACTTAAAGTGGAGGCAACATC
1 ACTTAAAGAGGAGGCAACATC
50054351 ACTTAAAGAGGAGGCAACA
1 ACTTAAAGAGGAGGCAACA
50054370 GCGAAGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.17, G:0.25, T:0.15
Consensus pattern (21 bp):
ACTTAAAGAGGAGGCAACATC
Found at i:50054809 original size:43 final size:43
Alignment explanation
Indices: 50054754--50055024 Score: 228
Period size: 43 Copynumber: 6.3 Consensus size: 43
50054744 AGAACGTGAC
* * * * *
50054754 CTTTAGCAGCGTTTTCCAAAAAAGTGCCACTAAATGTCAAGTT
1 CTTTAGCGGCGTTTGCCCAAAAAGCGCCGCTAAATGTCAAGTT
* * * *
50054797 CTTTAACGGCGTTTTCCCAAAACGCGCCGCTAAA-GATCACGTT
1 CTTTAGCGGCGTTTGCCCAAAAAGCGCCGCTAAATG-TCAAGTT
* *
50054840 CTTTAGCGACGTTTGCCCAAAAAGCGTCGCTAAATGTCAAGTT
1 CTTTAGCGGCGTTTGCCCAAAAAGCGCCGCTAAATGTCAAGTT
* *
50054883 CTTTAGCGGCGTTTGCCCAAAAAGTGCCGCTAAAGGTCACA-TT
1 CTTTAGCGGCGTTTGCCCAAAAAGCGCCGCTAAATGTCA-AGTT
** * * **
50054926 CTTTAGCGGTAATTTTCCC-AAATGCGCCGCTAAAAATCACA-TT
1 CTTTAGCGG-CGTTTGCCCAAAAAGCGCCGCTAAATGTCA-AGTT
* ** ** * *
50054969 CTTTAGCGGCATTT-TTCTGAAAGCGCCGCTAAAAGTCATGTT
1 CTTTAGCGGCGTTTGCCCAAAAAGCGCCGCTAAATGTCAAGTT
*
50055011 CTTTAGCGACGTTT
1 CTTTAGCGGCGTTT
50055025 TTTTACATAA
Statistics
Matches: 189, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.01
42 36 0.19
43 144 0.76
44 8 0.04
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGCCCAAAAAGCGCCGCTAAATGTCAAGTT
Found at i:50054830 original size:86 final size:85
Alignment explanation
Indices: 50054730--50054917 Score: 227
Period size: 86 Copynumber: 2.2 Consensus size: 85
50054720 CATTTGAGAT
* * *
50054730 AAAATCGCCGCTAAAGA-ACGTGACCTTTAGC-AGCGTTTTCCAAAAAAGTGCCACTAAATGTCA
1 AAAAGCGCCGCTAAAGACACGT--CCTTTAGCGA-CGTTTGCCAAAAAAGCGCCACTAAATGTCA
*
50054793 AGTTCTTTAACGGCGTTTTCCCA
63 AGTTCTTTAACGGCGTTTGCCCA
* * * * *
50054816 AAACGCGCCGCTAAAGATCACGTTCTTTAGCGACGTTTGCCCAAAAAGCGTCGCTAAATGTCAAG
1 AAAAGCGCCGCTAAAGA-CACGTCCTTTAGCGACGTTTGCCAAAAAAGCGCCACTAAATGTCAAG
*
50054881 TTCTTTAGCGGCGTTTGCCCA
65 TTCTTTAACGGCGTTTGCCCA
*
50054902 AAAAGTGCCGCTAAAG
1 AAAAGCGCCGCTAAAG
50054918 GTCACATTCT
Statistics
Matches: 87, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
86 82 0.94
87 1 0.01
88 4 0.05
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (85 bp):
AAAAGCGCCGCTAAAGACACGTCCTTTAGCGACGTTTGCCAAAAAAGCGCCACTAAATGTCAAGT
TCTTTAACGGCGTTTGCCCA
Found at i:50055522 original size:30 final size:30
Alignment explanation
Indices: 50055487--50055547 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
50055477 AGACATACAA
50055487 AAAACAAACAAACAATTTGTTAATTTTTTC
1 AAAACAAACAAACAATTTGTTAATTTTTTC
50055517 AAAACAAACAAACAATTTGTTAATTTTTTC
1 AAAACAAACAAACAATTTGTTAATTTTTTC
50055547 A
1 A
50055548 TTGCTTCTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.48, C:0.13, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAACAAACAAACAATTTGTTAATTTTTTC
Found at i:50058603 original size:24 final size:25
Alignment explanation
Indices: 50058576--50058627 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
50058566 ACCTAGCCTC
50058576 TTTTAAT-AACTGGAGAAAAGCCCT
1 TTTTAATAAACTGGAGAAAAGCCCT
* * *
50058600 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGAGAAAAGCCCT
50058625 TTT
1 TTT
50058628 CGGTAAACTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 6 0.25
25 18 0.75
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGAGAAAAGCCCT
Found at i:50058639 original size:25 final size:25
Alignment explanation
Indices: 50058583--50058652 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
50058573 CTCTTTTAAT
* * *
50058583 AACTGGAGAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
50058608 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
50058633 AACTGGGGCATATCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50058653 AGCACTTCCT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:50059098 original size:27 final size:27
Alignment explanation
Indices: 50058863--50059101 Score: 354
Period size: 27 Copynumber: 8.9 Consensus size: 27
50058853 ATGGTAGTTT
* *
50058863 TACCCCACAAGGGTATTTC-GATAATTC
1 TACCCTACAGGGGTATTTCAG-TAATTC
* *
50058890 TACCCTACAGGGGTATTTCGGTTATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
50058917 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
50058944 TACCCTACAGGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* * *
50058971 TACCTTACAGGGGTATTTCGGTATTTC
1 TACCCTACAGGGGTATTTCAGTAATTC
* *
50058998 TACCCTACAAGGGTATTTCAGTAGTTC
1 TACCCTACAGGGGTATTTCAGTAATTC
50059025 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
50059052 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCAGTAATTC
*
50059079 TACCCTACAAGGGTATTTCAGTA
1 TACCCTACAGGGGTATTTCAGTA
50059102 TTTTACAATT
Statistics
Matches: 198, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 197 0.99
28 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCAGTAATTC
Found at i:50059131 original size:27 final size:27
Alignment explanation
Indices: 50059101--50059293 Score: 155
Period size: 27 Copynumber: 7.2 Consensus size: 27
50059091 GTATTTCAGT
*
50059101 ATTTTACAATTCGAGGGCT-TTTTGATA
1 ATTTTACAAATC-AGGGCTATTTTGATA
* * *
50059128 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGGCTATTTTGATA
* *
50059155 ATTTTACAAACCAGGG-TATTTTGGTA
1 ATTTTACAAATCAGGGCTATTTTGATA
* * * *
50059181 ATTTTATAAACCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGGCTATTTTGATA
* *
50059208 ATTTTATAAACCAAGGG-TATTTT-AGTA
1 ATTTTACAAATC-AGGGCTATTTTGA-TA
* *
50059235 ATTTTACAAACCAAGGG-TATTTTGGTA
1 ATTTTACAAATC-AGGGCTATTTTGATA
* *
50059262 ATTTTACAAA-CTAGGGGTATTTTGGTA
1 ATTTTACAAATC-AGGGCTATTTTGATA
50059289 ATTTT
1 ATTTT
50059294 GTAAACCAAG
Statistics
Matches: 149, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
26 35 0.23
27 110 0.74
28 4 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTTTACAAATCAGGGCTATTTTGATA
Found at i:50059253 original size:54 final size:54
Alignment explanation
Indices: 50059086--50059320 Score: 278
Period size: 54 Copynumber: 4.4 Consensus size: 54
50059076 TTCTACCCTA
** ** * * * *
50059086 CAAGGGTATTTCAGT-ATTTTACAATTCGAGGGCT-TTTTGATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGG-TATTTTGGTAATTTTACAAAC
* *
50059139 CAGGGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * *
50059192 CAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
* * **
50059246 CAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
*
50059300 CAAGGGTATTTCGGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
50059321 GTAAATCGAG
Statistics
Matches: 159, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
52 1 0.01
53 58 0.36
54 100 0.63
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAAC
Found at i:50059284 original size:81 final size:80
Alignment explanation
Indices: 50059142--50059320 Score: 304
Period size: 81 Copynumber: 2.2 Consensus size: 80
50059132 CACAAATCAG
*
50059142 GGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGT
50059207 AATTTTATAAACCAA
66 AATTTTATAAACCAA
* *
50059222 GGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
*
50059287 TAATTTTGTAAACCAA
65 TAATTTTATAAACCAA
*
50059303 GGGTATTTCGGTAATTTT
1 GGGTATTTTGGTAATTTT
50059321 GTAAATCGAG
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
80 24 0.26
81 68 0.74
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (80 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGT
AATTTTATAAACCAA
Found at i:50059299 original size:27 final size:27
Alignment explanation
Indices: 50059142--50059334 Score: 271
Period size: 27 Copynumber: 7.2 Consensus size: 27
50059132 CACAAATCAG
*
50059142 GGGTATTTTGGTAATTTTACAAACC-A
1 GGGTATTTTGGTAATTTTATAAACCAA
*
50059168 GGGTATTTTGGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAA
50059195 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* *
50059222 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * *
50059249 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAA
*
50059276 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* * * *
50059303 GGGTATTTCGGTAATTTTGTAAATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
50059330 GGGTA
1 GGGTA
50059335 AAACAGTAAT
Statistics
Matches: 151, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 24 0.16
27 127 0.84
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:50059334 original size:81 final size:80
Alignment explanation
Indices: 50059085--50059320 Score: 296
Period size: 81 Copynumber: 3.0 Consensus size: 80
50059075 ATTCTACCCT
** * * * * * * * *
50059085 ACAAGGGTATTTCAGT-ATTTTACAATTCGAGGGCT-TTTTGATAATTTCACAAATCAGGGGTAT
1 ACAAGGGTATTTTGGTAATTTTACAA-ACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTAT
50059148 TTTGGTAATTTTACAA
65 TTTGGTAATTTTACAA
* *
50059164 ACCAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
1 ACAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
*
50059229 TTAGTAATTTTACAA
66 TTGGTAATTTTACAA
* *
50059244 ACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTAT
1 A-CAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTAT
*
50059309 TTCGGTAATTTT
65 TTTGGTAATTTT
50059321 GTAAATCGAG
Statistics
Matches: 135, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
79 19 0.14
80 47 0.35
81 69 0.51
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (80 bp):
ACAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
TTGGTAATTTTACAA
Found at i:50059343 original size:27 final size:27
Alignment explanation
Indices: 50059311--50059535 Score: 315
Period size: 27 Copynumber: 8.3 Consensus size: 27
50059301 AAGGGTATTT
* *
50059311 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
50059338 CAGTAATTTTGTAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
50059365 CAGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* *
50059392 TGGTAATTCTATAAATAGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
* * *
50059419 CGATAATTCTGTAAATCAAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
50059446 CGATAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
50059473 TGGTAATTCTATAAATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
50059500 CGGTAATTCTATAGATCGAGGGTAAAA
1 CGGTAATTCTATAAATCGAGGGTAAAA
*
50059527 TGGTAATTC
1 CGGTAATTC
50059536 GAGGGTTAAA
Statistics
Matches: 180, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 180 1.00
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
CGGTAATTCTATAAATCGAGGGTAAAA
Found at i:50059344 original size:54 final size:54
Alignment explanation
Indices: 50059285--50059535 Score: 220
Period size: 54 Copynumber: 4.6 Consensus size: 54
50059275 GGGGTATTTT
* ** * *
50059285 GGTAATTTTGTAAACCAAGGGTATTTCGGTAATTTTGTAAATCGAGGGTAAAAC
1 GGTAATTTTATAAACCAAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * * *
50059339 AGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAT
1 GGTAATTTTATAAACCAAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * * * *
50059393 GGTAATTCTATAAA-TAGAGGGTAAAACGATAATTCTGTAAATCAAGGGTAAAAC
1 GGTAATTTTATAAACCA-AGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
50059447 GATAATTCTATAAATCGAGGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAAC
1 GGTAATTTTATAAACCAAGGGT-AAATCGGTAATTCTATAAATCGAGGGTAAAAC
* * * *
50059501 GGTAATTCTATAGATCGAGGGTAAAAT-GGTAATTC
1 GGTAATTTTATAAACCAAGGGT-AAATCGGTAATTC
50059536 GAGGGTTAAA
Statistics
Matches: 165, Mismatches: 29, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
54 162 0.98
55 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (54 bp):
GGTAATTTTATAAACCAAGGGTAAATCGGTAATTCTATAAATCGAGGGTAAAAC
Found at i:50059552 original size:19 final size:19
Alignment explanation
Indices: 50059515--50059554 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
50059505 ATTCTATAGA
* *
50059515 TCGAGGGTAAAATGGTAAT
1 TCGAGGGTAAAACGATAAT
*
50059534 TCGAGGGTTAAACGATAAT
1 TCGAGGGTAAAACGATAAT
50059553 TC
1 TC
50059555 TATAAATCGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.28
Consensus pattern (19 bp):
TCGAGGGTAAAACGATAAT
Found at i:50059626 original size:26 final size:26
Alignment explanation
Indices: 50059549--50059720 Score: 123
Period size: 27 Copynumber: 6.4 Consensus size: 26
50059539 GGTTAAACGA
* * *
50059549 TAATTCTATAAATCGGGGGTACTTT-GA
1 TAATTTTAT-AATCGAGGGTA-TTTCGG
* * * *
50059576 TAATTTTACAAGTCCATGGTATTTCAG
1 TAATTTTATAA-TCGAGGGTATTTCGG
*
50059603 TAATTTTATAATCGACGGTATTTCGG
1 TAATTTTATAATCGAGGGTATTTCGG
* *
50059629 TAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTAT-AATCGAGGGTA-TTTCGG
* * * *
50059656 TAATTTTTTAAGTCAAAGGTATTTCAG
1 TAATTTTATAA-TCGAGGGTATTTCGG
*
50059683 TAATTTTACAAATCGAGGGTATTTCGG
1 TAATTTTA-TAATCGAGGGTATTTCGG
*
50059710 TAATTTAATAA
1 TAATTTTATAA
50059721 ACTAAAGTAT
Statistics
Matches: 111, Mismatches: 27, Indels: 15
0.73 0.18 0.10
Matches are distributed among these distances:
26 33 0.30
27 73 0.66
28 5 0.05
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (26 bp):
TAATTTTATAATCGAGGGTATTTCGG
Found at i:50059682 original size:80 final size:81
Alignment explanation
Indices: 50059549--50059722 Score: 251
Period size: 80 Copynumber: 2.2 Consensus size: 81
50059539 GGTTAAACGA
* * * * *
50059549 TAATTCTATAAATCGGGGGTACTTTGATAATTTTACAAGTCCATGGTATTTCAGTAATTTTA-TA
1 TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAA
50059613 ATCGACGGTATTTCGG
66 ATCGACGGTATTTCGG
* **
50059629 TAATTTTATAAACCGGGGGTACTTTGGTAATTTTTTAAGTCAAAGGTATTTCAGTAATTTTACAA
1 TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAA
*
50059694 ATCGAGGGTATTTCGG
66 ATCGACGGTATTTCGG
*
50059710 TAATTTAATAAAC
1 TAATTTTATAAAC
50059723 TAAAGTATTC
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
80 55 0.66
81 28 0.34
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (81 bp):
TAATTTTATAAACCGGGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAA
ATCGACGGTATTTCGG
Found at i:50059689 original size:54 final size:53
Alignment explanation
Indices: 50059576--50059720 Score: 150
Period size: 54 Copynumber: 2.7 Consensus size: 53
50059566 GGTACTTTGA
* * * * * *
50059576 TAATTTTACAAGTCC-ATGGTATTTCAGTAATTTTATAATCGACGGTATTTCGG
1 TAATTTTACAA-ACCGAGGGTATTTCGGTAATTTTATAATCAAAGGTATTTCAG
* * *
50059629 TAATTTTATAAACCGGGGGTACTTT-GGTAATTTTTTAAGTCAAAGGTATTTCAG
1 TAATTTTACAAACCGAGGGTA-TTTCGGTAATTTTATAA-TCAAAGGTATTTCAG
* *
50059683 TAATTTTACAAATCGAGGGTATTTCGGTAATTTAATAA
1 TAATTTTACAAACCGAGGGTATTTCGGTAATTTTATAA
50059721 ACTAAAGTAT
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
52 2 0.03
53 28 0.38
54 44 0.59
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (53 bp):
TAATTTTACAAACCGAGGGTATTTCGGTAATTTTATAATCAAAGGTATTTCAG
Found at i:50062139 original size:25 final size:25
Alignment explanation
Indices: 50062111--50062179 Score: 95
Period size: 24 Copynumber: 2.8 Consensus size: 25
50062101 CTCTTTTAAT
*
50062111 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
50062136 AACTCGGGCAAAG-CCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
50062160 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
50062180 AGTACTTCCT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
24 20 0.53
25 18 0.47
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:50062474 original size:81 final size:81
Alignment explanation
Indices: 50062381--50062653 Score: 377
Period size: 81 Copynumber: 3.4 Consensus size: 81
50062371 GGGACAAAAT
* * * * *
50062381 GGTAATTTTACCCCACAAGGGTATCTCAATAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
*
50062446 CCTACAAGGGTATTTC
66 CCTACAGGGGTATTTC
*
50062462 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
50062527 CCTACAGGGGTATTTC
66 CCTACAGGGGTATTTC
* * * ** * * *
50062543 GGTAGTTCTATCCTACAAGGTTATTTTGGTAGTTCTA-CCTACAAGGGTATTTCGATAATTCTAC
1 GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
* *
50062607 CATACAGGGGTATTTT
66 CCTACAGGGGTATTTC
*
50062623 AGTAATTCTACCCTACAAGGGTATTTCAGTA
1 GGTAATTCTACCCTACAAGGGTATTTCAGTA
50062654 TTTTACGAAT
Statistics
Matches: 168, Mismatches: 24, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
80 64 0.38
81 104 0.62
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
CCTACAGGGGTATTTC
Found at i:50062653 original size:27 final size:27
Alignment explanation
Indices: 50062381--50062649 Score: 342
Period size: 27 Copynumber: 10.0 Consensus size: 27
50062371 GGGACAAAAT
* * *
50062381 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
50062408 AATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
50062435 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50062462 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
50062489 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50062516 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50062543 GGTAGTTCTATCCTACAAGGTTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50062570 GGTAGTTCTA-CCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
50062596 GATAATTCTACCATACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
50062623 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
50062650 AGTATTTTAC
Statistics
Matches: 210, Mismatches: 31, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.10
27 188 0.90
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:50062846 original size:27 final size:27
Alignment explanation
Indices: 50062638--50062845 Score: 222
Period size: 27 Copynumber: 7.8 Consensus size: 27
50062628 TTCTACCCTA
** * *
50062638 CAAGGGTATTTCAGT-ATTTTACGAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * * * *
50062664 CGAGGGTTTTTTGATAATTTCATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
50062691 CAA-GGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
50062717 CAGGGGTATTTTTGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
50062744 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
50062771 GAAGGGTAATTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
50062798 CAGGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
**
50062825 CAAGGGTATTTCAGTAATTTT
1 CAAGGGTATTTTGGTAATTTT
50062846 GTGAATCGAG
Statistics
Matches: 150, Mismatches: 30, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
26 30 0.20
27 120 0.80
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Done.