Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 171 of 328
Found at i:50418230 original size:66 final size:68
Alignment explanation
Indices: 50418152--50418338 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
50418142 TAGTACCACT
*
50418152 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
50418214 CACG
65 CACG
50418218 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
50418283 ATCACG
63 ATCACG
50418289 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
50418339 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:50418263 original size:71 final size:71
Alignment explanation
Indices: 50418175--50418338 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50418165 CGATTTGTCT
50418175 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50418240 CTTTCA
66 CTTTCA
50418246 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
50418311 CTTTCA
66 CTTTCA
50418317 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
50418339 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:50418376 original size:71 final size:70
Alignment explanation
Indices: 50418175--50418372 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
50418165 CGATTTGTCT
* * * *
50418175 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50418240 CTTTCA
65 CTTTCA
* * * *
50418246 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
50418311 CTTTCA
65 CTTTCA
* *
50418317 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
50418373 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:50421392 original size:30 final size:30
Alignment explanation
Indices: 50421358--50421425 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
50421348 TAGGGCAGAC
50421358 CGTGTGCCACACACGACCTAGACACACGAT
1 CGTGTGCCACACACGACCTAGACACACGAT
*
50421388 CGTGTGCCACACACGACCTAGACACACGCT
1 CGTGTGCCACACACGACCTAGACACACGAT
50421418 CGTGTGCC
1 CGTGTGCC
50421426 TATCCGTGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.25, C:0.38, G:0.22, T:0.15
Consensus pattern (30 bp):
CGTGTGCCACACACGACCTAGACACACGAT
Found at i:50422161 original size:58 final size:58
Alignment explanation
Indices: 50422068--50422182 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 58
50422058 TATTATACAC
50422068 ATAACACAATAATATTTATCACAATGTCATCAAGTATCATAGGTACATTTTAAGTCAT
1 ATAACACAATAATATTTATCACAATGTCATCAAGTATCATAGGTACATTTTAAGTCAT
* *
50422126 ATAACACAATAATATTTATCACAATGTCATTAAGTATCATAGGTACATTTTCAGTCA
1 ATAACACAATAATATTTATCACAATGTCATCAAGTATCATAGGTACATTTTAAGTCA
50422183 CGCATTTACA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.35
Consensus pattern (58 bp):
ATAACACAATAATATTTATCACAATGTCATCAAGTATCATAGGTACATTTTAAGTCAT
Found at i:50422474 original size:48 final size:48
Alignment explanation
Indices: 50422399--50422583 Score: 264
Period size: 48 Copynumber: 3.9 Consensus size: 48
50422389 CACATGGCAG
* * * *
50422399 GATGGCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
* **
50422447 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCATAGGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
50422495 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAGT-
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATA-TC
* * *
50422543 GATGCCAAAGGCATGTCTCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
50422584 GTACATTACC
Statistics
Matches: 123, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
48 122 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATC
Found at i:50422565 original size:96 final size:96
Alignment explanation
Indices: 50422399--50422583 Score: 291
Period size: 96 Copynumber: 1.9 Consensus size: 96
50422389 CACATGGCAG
* * * *
50422399 GATGGCAATGCCATATCCCGGATATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTC
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAAGCCATGTC
50422464 CCAGACATGGTCTTACATGGGATCATAGGTC
66 CCAGACATGGTCTTACATGGGATCATAGGTC
* *
50422495 GATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATAGT-GATGCCAAAGGCATGT
1 GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATA-TCGATGCCAAAGCCATGT
*
50422559 CTCAGACATGGTCTTACATGGGATC
65 CCCAGACATGGTCTTACATGGGATC
50422584 GTACATTACC
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 80 0.99
97 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (96 bp):
GATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAAGCCATGTC
CCAGACATGGTCTTACATGGGATCATAGGTC
Found at i:50422935 original size:29 final size:29
Alignment explanation
Indices: 50422896--50422955 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
50422886 TTATTTAATT
50422896 ATCACATTGTTAAAAATAGTCCATAAATC
1 ATCACATTGTTAAAAATAGTCCATAAATC
50422925 ATCACATTGTTAAAAATAGTCCATAAATC
1 ATCACATTGTTAAAAATAGTCCATAAATC
50422954 AT
1 AT
50422956 ACTTTGGCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.17, G:0.07, T:0.32
Consensus pattern (29 bp):
ATCACATTGTTAAAAATAGTCCATAAATC
Found at i:50425566 original size:41 final size:41
Alignment explanation
Indices: 50425507--50425586 Score: 142
Period size: 41 Copynumber: 2.0 Consensus size: 41
50425497 ACTAGTTTAA
* *
50425507 AGAGTCACATGCCTATATGGGTAGGCCATGTGGTCACACGG
1 AGAGTCACACGCCCATATGGGTAGGCCATGTGGTCACACGG
50425548 AGAGTCACACGCCCATATGGGTAGGCCATGTGGTCACAC
1 AGAGTCACACGCCCATATGGGTAGGCCATGTGGTCACAC
50425587 ACACTCGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (41 bp):
AGAGTCACACGCCCATATGGGTAGGCCATGTGGTCACACGG
Found at i:50430663 original size:15 final size:15
Alignment explanation
Indices: 50430615--50430664 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
50430605 ATGAAAATCG
*
50430615 AGATAAAGAAGTCCA
1 AGATAAAGAAATCCA
* *
50430630 GGACAAAGAAATCCA
1 AGATAAAGAAATCCA
50430645 AGATAAAGAAATCCA
1 AGATAAAGAAATCCA
50430660 AGATA
1 AGATA
50430665 CAATATCATA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.18, T:0.12
Consensus pattern (15 bp):
AGATAAAGAAATCCA
Found at i:50434105 original size:39 final size:40
Alignment explanation
Indices: 50433963--50434123 Score: 182
Period size: 40 Copynumber: 4.0 Consensus size: 40
50433953 GAATTTAGCT
* * * *
50433963 GGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCC
1 GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
* ** * *
50434003 GGATTTGGTAACTTGCACAAATGCCTTCGGGTCTTAGCCC
1 GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
* *
50434043 GGATATAA-CAACTCGCACGAATGCCTTCGGGTCTTAGCCC
1 GGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCC
* *
50434083 -GATATAATCACTAGCATAAATGCCTTCGGGACTTAGCCC
1 GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
50434122 GG
1 GG
50434124 GTATCATTCA
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 33 0.33
40 66 0.67
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGCCC
Found at i:50439507 original size:40 final size:40
Alignment explanation
Indices: 50439413--50439557 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
50439403 TACTCGAATG
*
50439413 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
50439454 ACATTCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
50439494 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
*
50439534 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
50439558 CTTGTGGGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:50443059 original size:31 final size:31
Alignment explanation
Indices: 50443021--50443114 Score: 170
Period size: 31 Copynumber: 3.0 Consensus size: 31
50443011 CTTTTCACAC
**
50443021 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATATTACTGGGCCGAAGCCTT
50443052 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATATTACTGGGCCGAAGCCTT
50443083 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATATTACTGGGCCGAAGCCTT
50443114 T
1 T
50443115 ACTATAAACG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATATTACTGGGCCGAAGCCTT
Found at i:50443389 original size:25 final size:24
Alignment explanation
Indices: 50443308--50443404 Score: 108
Period size: 25 Copynumber: 4.0 Consensus size: 24
50443298 GCTTTATCAT
*
50443308 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
50443333 GTAGCTAGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
50443356 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
50443381 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
50443405 CACTTCCTCC
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
23 15 0.25
24 17 0.28
25 28 0.47
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:50443478 original size:20 final size:20
Alignment explanation
Indices: 50443453--50443519 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
50443443 TTATGAATAC
50443453 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
50443473 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
50443493 TTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
50443513 ACCATGT
1 ATCATGT
50443520 TTATTAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:50445627 original size:40 final size:40
Alignment explanation
Indices: 50445572--50445779 Score: 240
Period size: 40 Copynumber: 5.2 Consensus size: 40
50445562 TGAATGATAC
* *
50445572 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
50445612 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
50445652 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * * ** *
50445692 CCGGGCTAACACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
50445732 CCGGGTTAAGACCCGAAGGTAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
50445772 CC-GGCTAA
1 CCGGGCTAA
50445780 ATTCCGAAGA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 6 0.04
40 135 0.94
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:50448245 original size:40 final size:39
Alignment explanation
Indices: 50448085--50448247 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
50448075 TGTGTATGAA
*
50448085 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
50448124 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
50448163 GGTGCGAGCTATGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
50448202 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
50448242 TGTGCG
1 TGTGCG
50448248 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:50448263 original size:40 final size:39
Alignment explanation
Indices: 50448085--50448278 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
50448075 TGTGTATGAA
* *
50448085 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
50448124 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
50448163 GGTGCGAGCTATGATATTCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
50448202 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
50448242 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGC
50448279 GTTTGAATGA
Statistics
Matches: 136, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 95 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:50451080 original size:3 final size:3
Alignment explanation
Indices: 50451072--50451109 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
50451062 ACCAGACTTA
50451072 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
50451110 TTATGTGTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:50457591 original size:16 final size:16
Alignment explanation
Indices: 50457566--50457597 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
50457556 TCCCTCCAGG
50457566 ATGCACAGCACACAGA
1 ATGCACAGCACACAGA
*
50457582 ATGCATAGCACACAGA
1 ATGCACAGCACACAGA
50457598 CCACCATGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.28, G:0.19, T:0.09
Consensus pattern (16 bp):
ATGCACAGCACACAGA
Found at i:50459710 original size:29 final size:29
Alignment explanation
Indices: 50459575--50459709 Score: 209
Period size: 29 Copynumber: 4.7 Consensus size: 29
50459565 GCTTGGAAGG
50459575 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
50459604 TATGGCACTAAGTGTGCGAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
*
50459633 TATGGCACTAAGTGTGCAAACTTAAATTA
1 TATGGCACTAAGTGTGCGAACTTAAATTA
* **
50459662 TATGGCACTATA-TGTGCGAGCTTAAATCG
1 TATGGCACTA-AGTGTGCGAACTTAAATTA
*
50459691 CATGGCACTAAGTGTGCGA
1 TATGGCACTAAGTGTGCGA
50459710 GATCGTTTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 4
0.91 0.06 0.04
Matches are distributed among these distances:
28 1 0.01
29 96 0.98
30 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.30
Consensus pattern (29 bp):
TATGGCACTAAGTGTGCGAACTTAAATTA
Found at i:50464071 original size:27 final size:27
Alignment explanation
Indices: 50464041--50464372 Score: 324
Period size: 27 Copynumber: 12.3 Consensus size: 27
50464031 TTAGTTTACC
*
50464041 AAATTACCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * **
50464068 AAATCACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50464095 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
50464122 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
50464149 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
50464176 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
50464203 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** *
50464230 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
50464257 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * ***
50464284 AAATTACTGAAATACCCTTGACCTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** **
50464311 AAATTATTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * * **
50464338 AAATTACCAAAGTACCCTTGATTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
50464365 AAATTACC
1 AAATTACC
50464373 GTTTTATCCT
Statistics
Matches: 256, Mismatches: 47, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
26 3 0.01
27 250 0.98
28 3 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:50464106 original size:54 final size:54
Alignment explanation
Indices: 50464034--50464372 Score: 383
Period size: 54 Copynumber: 6.3 Consensus size: 54
50464024 GAATACTTTA
* * *
50464034 GTTTACCAAATTACCAAAATACCTCTGGTTTGTAAAATCACTAAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * *
50464088 GTTTACAAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
*
50464142 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* * * * *
50464196 GTTTATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTA
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
* *** * * *
50464250 ATTTGTGAAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTTG
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
*** ** ** ** * *
50464304 ACCTGTAAAATTATTAAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTG
1 GTTTACAAAATTACCAAAATACCCCT-GGTTTGTAAAATTACTAAAATACCCTTG
*
50464358 ATTTACAAAATTACC
1 GTTTACAAAATTACC
50464373 GTTTTATCCT
Statistics
Matches: 243, Mismatches: 41, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 4 0.02
54 239 0.98
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTG
Found at i:50464431 original size:27 final size:27
Alignment explanation
Indices: 50464393--50464849 Score: 619
Period size: 27 Copynumber: 17.0 Consensus size: 27
50464383 CGATTTATAA
*
50464393 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
50464420 AAATATCGAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
50464447 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50464474 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50464501 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50464528 AATTATCGCAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50464555 AATTATCGAAATACCCCTATA-GGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50464581 AATTACTGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
50464608 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
50464635 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50464662 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50464689 AAATACCTAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50464716 AATTACAGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50464743 AATTACTGGAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
50464770 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
50464797 AATTATTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
50464824 AATTACCGGAATACCCTTGTGGGGTA
1 AATTACCGAAATACCCCTGTAGGGTA
50464850 AATACCTCTG
Statistics
Matches: 380, Mismatches: 49, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
26 22 0.06
27 358 0.94
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:50464451 original size:54 final size:54
Alignment explanation
Indices: 50464393--50465089 Score: 873
Period size: 54 Copynumber: 13.1 Consensus size: 54
50464383 CGATTTATAA
* * * *
50464393 AATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCTTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
*
50464447 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
50464501 AATTACCGAAATACCCCTGTATGGTAGAATTATCGCAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
50464555 AATTATCGAAATACCCCTATA-GGTAGAATTA-CTGAAATACCACTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTGTAGGGTAG
* * *
50464608 AATTATCGGAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * * * *
50464662 AATTACCGAAATACCCTTGTAGGGTAGAAATACCTAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
50464716 AATTACAGAAATACCCCTGTAGGGTAGAATTA-CTGGAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATC-GAAATACCCCTGTAGGGTAG
* * *
50464770 AATTACCGGAATACCCCTGTAGGGTAGAATTATTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * *
50464824 AATTACCGGAATACCCTTGT-GGG--G-----T--AAATACCTCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* * * *
50464868 AATTATCGCAATACCCCTGTAGGGTAGAATCACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* *
50464922 AATCACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
* *
50464976 AATTATCGTAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
** * * * * * * *
50465030 AATTACTAAAATACCCTTGTAGGGTGGAATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
50465083 AATTACC
1 AATTACC
50465090 ATTTTGCCCC
Statistics
Matches: 567, Mismatches: 61, Indels: 31
0.86 0.09 0.05
Matches are distributed among these distances:
44 34 0.06
45 3 0.01
46 1 0.00
47 1 0.00
51 1 0.00
52 1 0.00
53 67 0.12
54 458 0.81
55 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTGTAGGGTAG
Found at i:50464478 original size:81 final size:81
Alignment explanation
Indices: 50464393--50465089 Score: 882
Period size: 81 Copynumber: 8.8 Consensus size: 81
50464383 CGATTTATAA
* * * * * *
50464393 AATTACCGAAATACCCTTGTAGGGTAGAAATATCGAAATACCCTTGTAGGGTGGAATTACCGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
50464458 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
50464474 AATTATCGCAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTATGGTAGAATTATCGCAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
50464539 TACCTCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * *
50464555 AATTATCGAAATACCCCTATA-GGTAGAATTACTGAAATACCACTGTAGGGTAGAATTATCGGAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
50464619 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
50464635 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCTAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
50464700 TACCCCTGTAGGGTGG
66 TACCCCTGTAGGGTAG
* * * *
50464716 AATTA-CAGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCTGTAGGGTAAAATTACCGGA
1 AATTATC-GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAA
50464780 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * *
50464797 AATTATTGGAATACCCCTGTAGGGTAGAATTACCGGAATACCCTTGT-GGG--G---T----AAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
50464852 TACCTCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
50464868 AATTATCGCAATACCCCTGTAGGGTAGAATCACCGAAATACCCCTGTAGGGTAGAATCACCGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
*
50464933 TACCCCTATAGGGTAG
66 TACCCCTGTAGGGTAG
* * *
50464949 AATTATCGAAATACCCCTGTAGGGTAGAATTATCGTAATACCCCTGTAGGGTAGAATTATCGAAA
1 AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
50465014 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * * * * *
50465030 AATTA-CTAAAATACCCTTGTAGGGTGGAATTACCGAGATA-CCTTGTGGGGTAAAATTACC
1 AATTATC-GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
50465090 ATTTTGCCCC
Statistics
Matches: 534, Mismatches: 68, Indels: 29
0.85 0.11 0.05
Matches are distributed among these distances:
71 59 0.11
72 3 0.01
74 1 0.00
75 1 0.00
80 94 0.18
81 376 0.70
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (81 bp):
AATTATCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCCTGTAGGGTAG
Found at i:50464869 original size:44 final size:44
Alignment explanation
Indices: 50464806--50464893 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
50464796 GAATTATTGG
* * *
50464806 AATACCCCTGTAGGGTAGAATTACCGGAATACCCTTGTGGGGTA
1 AATACCCCTGTAGGGTAGAATTACCGCAATACCCCTGTAGGGTA
* *
50464850 AATACCTCTGTAGGGTAGAATTATCGCAATACCCCTGTAGGGTA
1 AATACCCCTGTAGGGTAGAATTACCGCAATACCCCTGTAGGGTA
50464894 GAATCACCGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
AATACCCCTGTAGGGTAGAATTACCGCAATACCCCTGTAGGGTA
Found at i:50464888 original size:27 final size:27
Alignment explanation
Indices: 50464849--50465071 Score: 313
Period size: 27 Copynumber: 8.3 Consensus size: 27
50464839 CTTGTGGGGT
*
50464849 AAATACCTCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* * *
50464876 CAATACCCCTGTAGGGTAGAATCACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
* *
50464903 AAATACCCCTGTAGGGTAGAATCACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
*
50464930 AAATACCCCTATAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
50464957 AAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
*
50464984 TAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCCTGTAGGGTAGAATTATCG
*
50465011 AAATACCCCTGTAGGGTAGAATTA-CTA
1 AAATACCCCTGTAGGGTAGAATTATC-G
* * *
50465038 AAATACCCTTGTAGGGTGGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTATCG
*
50465065 AGATACC
1 AAATACC
50465072 TTGTGGGGTA
Statistics
Matches: 178, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 176 0.99
28 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.25
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTATCG
Found at i:50464972 original size:152 final size:152
Alignment explanation
Indices: 50464696--50465085 Score: 453
Period size: 152 Copynumber: 2.5 Consensus size: 152
50464686 TAGAAATACC
* * * *
50464696 TAAATACCCCTGTAGGGTGGAATTACAGAAATACCCCTGTAGGGTAGAATTACTGGAATACCCCT
1 TAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATCACCGAAATACCCCT
* * * * *
50464761 GTAGGGTAAAATTACCGGAATACCCCTGTAGGGTAGAATTATTGGAATACCCCTGTAGGGTAGAA
66 GTAGGGTAAAATCACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAA
* *
50464826 TTACCGGAATACCCTTGTGGGG
131 TTACCGGAATACCCCTGTAGGG
* *
50464848 TAAATACCTCTGTAGGGTAGAATTATC-GCAATACCCCTGTAGGGTAGAATCACCGAAATACCCC
1 TAAATACCCCTGTAGGGTAGAATTA-CAGAAATACCCCTGTAGGGTAGAATCACCGAAATACCCC
*
50464912 TGTAGGGTAGAATCACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGA
65 TGTAGGGTAAAATCACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGA
* *
50464977 ATTATCGTAATACCCCTGTAGGGTAG
130 ATTACCGGAATACCCCTGTA-GG--G
* * * *
50465003 AATTATCGAAATACCCCTGTAGGGTAGAATTACTA-AAATACCCTTGTAGGGTGGAATTACCGAG
1 -----T--AAATACCCCTGTAGGGTAGAATTAC-AGAAATACCCCTGTAGGGTAGAATCACCGAA
* *
50465067 ATA-CCTTGTGGGGTAAAAT
58 ATACCCCTGTAGGGTAAAAT
50465086 TACCATTTTG
Statistics
Matches: 200, Mismatches: 25, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
152 131 0.65
153 3 0.01
155 1 0.00
160 1 0.00
161 14 0.07
162 50 0.25
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (152 bp):
TAAATACCCCTGTAGGGTAGAATTACAGAAATACCCCTGTAGGGTAGAATCACCGAAATACCCCT
GTAGGGTAAAATCACCGAAATACCCCTATAGGGTAGAATTATCGAAATACCCCTGTAGGGTAGAA
TTACCGGAATACCCCTGTAGGG
Found at i:50465576 original size:22 final size:22
Alignment explanation
Indices: 50465516--50465580 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
50465506 TTAAAGCCTT
* *
50465516 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTATGTGCCAAC
* * *
50465538 CT-ACATATAGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
50465560 CTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
50465581 ACATATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:50465751 original size:25 final size:26
Alignment explanation
Indices: 50465721--50465814 Score: 95
Period size: 27 Copynumber: 3.6 Consensus size: 26
50465711 GATGGCTTCG
* *
50465721 TGCCACATAT-TCTGTTAAGTGGCTT
1 TGCCACATATATCTGTTTAGTGGCTA
*
50465746 TGCCACAT-TATCTGTTTTTGGTGGCTA
1 TGCCACATATATCTG--TTTAGTGGCTA
* *
50465773 TGCCACAAATATCTGTTCTAGTGGCTC
1 TGCCACATATATCTGTT-TAGTGGCTA
50465800 TGCCACA-ATATCTGT
1 TGCCACATATATCTGT
50465815 ATCTGGCGAC
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
24 1 0.02
25 12 0.21
26 10 0.17
27 29 0.50
28 6 0.10
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.38
Consensus pattern (26 bp):
TGCCACATATATCTGTTTAGTGGCTA
Found at i:50465827 original size:27 final size:26
Alignment explanation
Indices: 50465739--50465840 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 26
50465729 ATTCTGTTAA
* * *
50465739 GTGGCTTTGCCACATTATCTGTTTTTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
* *
50465766 GTGGCTATGCCACAAATATCTGTTCTA
1 GTGGCTCTGCCAC-AATATCTGTTCTG
50465793 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
* * *
50465820 GCGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
50465841 ATAACTGAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 9 0.14
27 48 0.75
28 7 0.11
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:50465834 original size:54 final size:53
Alignment explanation
Indices: 50465721--50465840 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 53
50465711 GATGGCTTCG
* * * * * * *
50465721 TGCCAC-ATATTCTGTT-AAGTGGCTTTGCCACATTATCTGTTTTTGGTGGCTA
1 TGCCACAATA-TCTGTTCTAGTGGCTCTGCCACAATATCTGTATCTGGCGACTA
*
50465773 TGCCACAAATATCTGTTCTAGTGGCTCTGCCACAATATCTGTATCTGGCGACTC
1 TGCCAC-AATATCTGTTCTAGTGGCTCTGCCACAATATCTGTATCTGGCGACTA
*
50465827 TGTCACAATATCTG
1 TGCCACAATATCTG
50465841 ATAACTGAGC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
52 6 0.11
53 14 0.25
54 36 0.64
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (53 bp):
TGCCACAATATCTGTTCTAGTGGCTCTGCCACAATATCTGTATCTGGCGACTA
Found at i:50466031 original size:31 final size:31
Alignment explanation
Indices: 50465977--50466063 Score: 102
Period size: 31 Copynumber: 2.8 Consensus size: 31
50465967 TTTCATTCAC
* *
50465977 ATTCTAATTTTTGATACTATTACCTGATACTA
1 ATTCTAA-TTTTGATTCTGTTACCTGATACTA
* *
50466009 ATTCTTATTTTGATTCTGTTACCTGATACTG
1 ATTCTAATTTTGATTCTGTTACCTGATACTA
* * *
50466040 ATTCTAATTCTAATTCTGTCACCT
1 ATTCTAATTTTGATTCTGTTACCT
50466064 AATATTGATT
Statistics
Matches: 47, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
31 41 0.87
32 6 0.13
ACGTcount: A:0.25, C:0.18, G:0.08, T:0.48
Consensus pattern (31 bp):
ATTCTAATTTTGATTCTGTTACCTGATACTA
Found at i:50466073 original size:31 final size:31
Alignment explanation
Indices: 50465998--50466118 Score: 98
Period size: 31 Copynumber: 3.9 Consensus size: 31
50465988 TGATACTATT
* * * * * *
50465998 ACCTGATACTAATTCTTATTTTGATTCTGTT
1 ACCTAATACTGATTCTAATTCTAATTCTGTC
*
50466029 ACCTGATACTGATTCTAATTCTAATTCTGTC
1 ACCTAATACTGATTCTAATTCTAATTCTGTC
* * * * *
50466060 ACCTAATATTGATTTTGATTCTGATTCTATC
1 ACCTAATACTGATTCTAATTCTAATTCTGTC
* * * *
50466091 ACCTAATTCTGATTTTGATTCTGATTCT
1 ACCTAATACTGATTCTAATTCTAATTCT
50466119 AGTTCTGATA
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.48
Consensus pattern (31 bp):
ACCTAATACTGATTCTAATTCTAATTCTGTC
Found at i:50466119 original size:31 final size:31
Alignment explanation
Indices: 50466019--50466119 Score: 114
Period size: 31 Copynumber: 3.3 Consensus size: 31
50466009 ATTCTTATTT
* * * * * *
50466019 TGATTCTGTTACCTGATACTGATTCTAATTC
1 TGATTCTATCACCTAATTCTGATTTTGATTC
* *
50466050 TAATTCTGTCACCTAATAT-TGATTTTGATTC
1 TGATTCTATCACCTAAT-TCTGATTTTGATTC
50466081 TGATTCTATCACCTAATTCTGATTTTGATTC
1 TGATTCTATCACCTAATTCTGATTTTGATTC
50466112 TGATTCTA
1 TGATTCTA
50466120 GTTCTGATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
30 1 0.02
31 59 0.98
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.48
Consensus pattern (31 bp):
TGATTCTATCACCTAATTCTGATTTTGATTC
Found at i:50468688 original size:29 final size:29
Alignment explanation
Indices: 50468650--50468810 Score: 234
Period size: 29 Copynumber: 5.6 Consensus size: 29
50468640 GTGATGAGAT
* *
50468650 TGGCACTAAGTGTGCAAGCTTGAAAT-GTA
1 TGGCACTAAGTGTGCGAGCTT-AAATCATA
* *
50468679 TGGCACTAAGTGTGTGAGTTTAAATCATA
1 TGGCACTAAGTGTGCGAGCTTAAATCATA
*
50468708 TGGCACTAAGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAATCATA
* *
50468737 TGGCACTAAGTGTGCAAGTTTAAATCATA
1 TGGCACTAAGTGTGCGAGCTTAAATCATA
*
50468766 TGGCACTAAGTGTGCGAGCTTAAATCACA
1 TGGCACTAAGTGTGCGAGCTTAAATCATA
50468795 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50468811 TGATCAATTA
Statistics
Matches: 118, Mismatches: 13, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
28 4 0.03
29 114 0.97
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTAAATCATA
Found at i:50468715 original size:58 final size:58
Alignment explanation
Indices: 50468650--50468809 Score: 259
Period size: 58 Copynumber: 2.8 Consensus size: 58
50468640 GTGATGAGAT
* ** **
50468650 TGGCACTAAGTGTGCAAGCTTGAAAT-GTATGGCACTAAGTGTGTGAGTTTAAATCATA
1 TGGCACTAAGTGTGCGAGCTT-AAATCACATGGCACTAAGTGTGCAAGTTTAAATCATA
50468708 TGGCACTAAGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGCAAGTTTAAATCATA
1 TGGCACTAAGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGCAAGTTTAAATCATA
50468766 TGGCACTAAGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGC
1 TGGCACTAAGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGC
50468810 GTGATCAATT
Statistics
Matches: 96, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
57 4 0.04
58 92 0.96
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (58 bp):
TGGCACTAAGTGTGCGAGCTTAAATCACATGGCACTAAGTGTGCAAGTTTAAATCATA
Found at i:50468746 original size:87 final size:87
Alignment explanation
Indices: 50468650--50468810 Score: 261
Period size: 87 Copynumber: 1.9 Consensus size: 87
50468640 GTGATGAGAT
* * * *
50468650 TGGCACTAAGTGTGCAAGCTTGAAAT-GTATGGCACTAAGTGTGTGAGTTTAAATCATATGGCAC
1 TGGCACTAAGTGTGCAAG-TTGAAATCATATGGCACTAAGTGTGCGAGCTTAAATCACATGGCAC
50468714 TAAGTGTGCGAGCTTAAATCACA
65 TAAGTGTGCGAGCTTAAATCACA
*
50468737 TGGCACTAAGTGTGCAAGTTTAAATCATATGGCACTAAGTGTGCGAGCTTAAATCACATGGCACT
1 TGGCACTAAGTGTGCAAGTTGAAATCATATGGCACTAAGTGTGCGAGCTTAAATCACATGGCACT
50468802 AAGTGTGCG
66 AAGTGTGCG
50468811 TGATCAATTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
86 6 0.09
87 62 0.91
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (87 bp):
TGGCACTAAGTGTGCAAGTTGAAATCATATGGCACTAAGTGTGCGAGCTTAAATCACATGGCACT
AAGTGTGCGAGCTTAAATCACA
Found at i:50477066 original size:19 final size:19
Alignment explanation
Indices: 50477021--50477067 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
50477011 TAAATATTAA
*
50477021 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
50477040 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
50477059 AATAAAAAT
1 AATAAAAAT
50477068 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:50482199 original size:15 final size:14
Alignment explanation
Indices: 50482170--50482271 Score: 53
Period size: 15 Copynumber: 7.0 Consensus size: 14
50482160 AATCATAAAA
50482170 CATAACCCATAAACC
1 CATAACCC-TAAACC
*
50482185 TATAGACCCTAAACC
1 CATA-ACCCTAAACC
**
50482200 CATAACCCTTGACC
1 CATAACCCTAAACC
* * *
50482214 CCTAAACCTCAACC
1 CATAACCCTAAACC
** *
50482228 C-TAAAACTATAAAC
1 CATAACCCTA-AACC
*
50482242 CAGAATCCCTAAACC
1 CATAA-CCCTAAACC
*
50482257 CATAATCCATAAACC
1 CATAA-CCCTAAACC
50482272 TTAAAATAGT
Statistics
Matches: 66, Mismatches: 17, Indels: 8
0.73 0.19 0.09
Matches are distributed among these distances:
13 6 0.09
14 23 0.35
15 30 0.45
16 7 0.11
ACGTcount: A:0.42, C:0.37, G:0.03, T:0.18
Consensus pattern (14 bp):
CATAACCCTAAACC
Found at i:50482216 original size:22 final size:23
Alignment explanation
Indices: 50482173--50482221 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
50482163 CATAAAACAT
50482173 AACCCATAAACCTATAGACCCTA
1 AACCCATAAACCTATAGACCCTA
*
50482196 AACCCATAACCCT-T-GACCCCTA
1 AACCCATAAACCTATAGA-CCCTA
50482218 AACC
1 AACC
50482222 TCAACCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 2 0.08
22 10 0.42
23 12 0.50
ACGTcount: A:0.39, C:0.41, G:0.04, T:0.16
Consensus pattern (23 bp):
AACCCATAAACCTATAGACCCTA
Found at i:50482767 original size:114 final size:108
Alignment explanation
Indices: 50482537--50482796 Score: 297
Period size: 114 Copynumber: 2.3 Consensus size: 108
50482527 CTAAAGCTCG
* * * *
50482537 ATCTATAGCGGCGGTTTTCAAAAAGTGCCGCTAATGCCACTAAAGCTCAAAGACGGTGTTGTGCT
1 ATCTATAGCGGTGTTTTTCAAAAAGCGCCGCTAATG-CACTAAAGCTCAAAGACGGCGTTGTGCT
** * * * **
50482602 TAATTTTTTTGTGGCATTTTTCAAAAAAGCGCCGCTAATGGTTG
65 TAATTTTTTTACGGCATTTTACAAAAAAGCGCCACTAATAGTCA
*
50482646 ATTTATAGCGGTGTTTTTCAAAAAGCGCCGCTAATGCACTAAAGCTCAACATAAAACGACGGCGT
1 ATCTATAGCGGTGTTTTTCAAAAAGCGCCGCTAATGCACTAAAGCT---C---AAA-GACGGCGT
* *
50482711 TGTGCTTAATTTTTTTACGGCGTTTTAC-AGAAAGCGCCACTAATAGTCA
59 TGTGCTTAATTTTTTTACGGCATTTTACAAAAAAGCGCCACTAATAGTCA
**
50482760 ATCTATAGCGGTGTTTTTTGAAAAGCGCCGCTAATGC
1 ATCTATAGCGGTGTTTTTCAAAAAGCGCCGCTAATGC
50482797 TCGATCTATA
Statistics
Matches: 127, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
108 10 0.08
109 32 0.25
111 1 0.01
114 53 0.42
115 31 0.24
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (108 bp):
ATCTATAGCGGTGTTTTTCAAAAAGCGCCGCTAATGCACTAAAGCTCAAAGACGGCGTTGTGCTT
AATTTTTTTACGGCATTTTACAAAAAAGCGCCACTAATAGTCA
Found at i:50482787 original size:40 final size:39
Alignment explanation
Indices: 50482732--50482867 Score: 148
Period size: 40 Copynumber: 3.4 Consensus size: 39
50482722 TTTTTACGGC
*
50482732 GTTTTACAGAAAGCGCCACTAATAG-TCAATCTATAGCGGT
1 GTTTTTCA-AAAGCGCCACTAAT-GCTCAATCTATAGCGGT
* * *
50482772 GTTTTTTGAAAAGCGCCGCTAATGCTCGATCTATAGCGGT
1 G-TTTTTCAAAAGCGCCACTAATGCTCAATCTATAGCGGT
* * *
50482812 GTTTTTCAAAGAGCGCCACTAATGCTCGATCTATAACAGT
1 GTTTTTCAAA-AGCGCCACTAATGCTCAATCTATAGCGGT
*
50482852 ATTTTTCAAGAAGCGC
1 GTTTTTCAA-AAGCGC
50482868 TGTTAATGCT
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
39 9 0.11
40 68 0.82
41 6 0.07
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (39 bp):
GTTTTTCAAAAGCGCCACTAATGCTCAATCTATAGCGGT
Found at i:50482875 original size:40 final size:39
Alignment explanation
Indices: 50482774--50482897 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 39
50482764 ATAGCGGTGT
* * * *
50482774 TTTTTGAAAAGCGCCGCTAATGCTCGATCTATAGCGGTG
1 TTTTTCAAAAGCGCCGCTAATGCTCGATCTATAACAGTA
*
50482813 TTTTTCAAAGAGCGCCACTAATGCTCGATCTATAACAGTA
1 TTTTTCAAA-AGCGCCGCTAATGCTCGATCTATAACAGTA
* * * *
50482853 TTTTTCAAGAAGCGCTGTTAATGCTCGATCTTTAACCGTA
1 TTTTTCAA-AAGCGCCGCTAATGCTCGATCTATAACAGTA
50482893 TTTTT
1 TTTTT
50482898 TATCCAAATG
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 8 0.11
40 64 0.88
41 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (39 bp):
TTTTTCAAAAGCGCCGCTAATGCTCGATCTATAACAGTA
Found at i:50482897 original size:80 final size:80
Alignment explanation
Indices: 50482743--50482897 Score: 179
Period size: 80 Copynumber: 1.9 Consensus size: 80
50482733 TTTTACAGAA
* * * * *
50482743 AGCGCCACTAATAGTCAATCTATAGCGGTGTTTTTTGAAAAGCGCCGCTAATGCTCGATCTATAG
1 AGCGCCACTAATAGTCAATCTATAACAGTGATTTTTCAAAAGCGCCGCTAATGCTCGATCTATAA
* *
50482808 CGGTGTTTTTCAAAG
66 CCGTATTTTTCAAAG
* * * *
50482823 AGCGCCACTAAT-GCTCGATCTATAACAGT-ATTTTTCAAGAAGCGCTGTTAATGCTCGATCTTT
1 AGCGCCACTAATAG-TCAATCTATAACAGTGATTTTTCAA-AAGCGCCGCTAATGCTCGATCTAT
50482886 AACCGTATTTTT
64 AACCGTATTTTT
50482898 TATCCAAATG
Statistics
Matches: 62, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
79 8 0.13
80 54 0.87
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (80 bp):
AGCGCCACTAATAGTCAATCTATAACAGTGATTTTTCAAAAGCGCCGCTAATGCTCGATCTATAA
CCGTATTTTTCAAAG
Found at i:50492353 original size:29 final size:28
Alignment explanation
Indices: 50492265--50492366 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
50492255 TACTCAATCA
* *
50492265 CGCACACTTAGTGCCACGT-GATTCAAGCC
1 CGCACACTTAGTG-C-CGTACATTCAAGCT
* * * * *
50492294 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCGTACA-TTCAAGCT
50492323 CGCACACTTAGTGCCGTACATTACAAGCT
1 CGCACACTTAGTGCCGTACATT-CAAGCT
*
50492352 CGCACACTCAGTGCC
1 CGCACACTTAGTGCC
50492367 AATCTCGTCA
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
27 2 0.03
28 3 0.05
29 53 0.91
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
CGCACACTTAGTGCCGTACATTCAAGCT
Found at i:50501211 original size:28 final size:29
Alignment explanation
Indices: 50501140--50501240 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
50501130 ATAGTGAATC
*
50501140 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
*
50501169 CACACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
50501197 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
50501227 CGCACACTTAGTGC
1 CGCACACTTAGTGC
50501241 CAATCTTGTC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 22 0.35
29 19 0.31
30 19 0.31
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:50507850 original size:89 final size:89
Alignment explanation
Indices: 50507731--50507908 Score: 311
Period size: 89 Copynumber: 2.0 Consensus size: 89
50507721 AGGGGTAATT
* * * *
50507731 TGTAAATTGCTCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGACTAAAAGCGTTAAA
1 TGTAAACTGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
50507796 TTTGAATTTATATAGATCAAGAAA
66 TTTGAATTTATATAGATCAAGAAA
*
50507820 TGTAAACTGCCCTAAATGTGTGTTTGTGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
1 TGTAAACTGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
50507885 TTTGAATTTATATAGATCAAGAAA
66 TTTGAATTTATATAGATCAAGAAA
50507909 CAAAGAAAAC
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 84 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (89 bp):
TGTAAACTGCCCTAAATGTGTGTTTATGGATTGATTTGAGTGATTTGGTGAATAAAAGAGTTAAA
TTTGAATTTATATAGATCAAGAAA
Found at i:50508297 original size:43 final size:42
Alignment explanation
Indices: 50508186--50508298 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 42
50508176 GTAATTTATG
* *
50508186 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTTCA
* *
50508228 TGTAAGACC-CTATCTAGGACTG-TGGCATCGATATTTG-TTTACA
1 TGTAAGACCAC-GTCTGGGA-TGTTGGCATCG-TATTTGATTT-CA
50508271 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGATGTTGGCAT
50508299 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
41 1 0.02
42 28 0.47
43 29 0.49
44 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTTCA
Found at i:50515332 original size:40 final size:40
Alignment explanation
Indices: 50515288--50515410 Score: 149
Period size: 40 Copynumber: 3.1 Consensus size: 40
50515278 GTGCTAAGTG
* *
50515288 ACTAAATCCGGACTAAGATCCGACGGCATACGTGCGAGTT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
* * * *
50515328 ACTAAATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCT
1 ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
** *
50515368 ACTAAATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTT
1 ACTAAATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTT
50515408 ACT
1 ACT
50515411 GTAACCGGGC
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 68 0.99
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.22
Consensus pattern (40 bp):
ACTAAATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTT
Found at i:50515431 original size:80 final size:80
Alignment explanation
Indices: 50515253--50515440 Score: 197
Period size: 80 Copynumber: 2.3 Consensus size: 80
50515243 TTCGAATGAT
* * *
50515253 ATCCAGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
50515318 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
50515333 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
50515394 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
50515414 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
50515441 ATGTGTAGCC
Statistics
Matches: 90, Mismatches: 11, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
79 2 0.02
80 78 0.87
81 10 0.11
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:50519556 original size:15 final size:15
Alignment explanation
Indices: 50519518--50519583 Score: 87
Period size: 15 Copynumber: 4.3 Consensus size: 15
50519508 ATTTCATAAT
*
50519518 AGTTTCATAATCTAT
1 AGTTTCATAATCTAA
50519533 AGATTTCATAATCTAA
1 AG-TTTCATAATCTAA
* *
50519549 AGTTTCATAGTCTAT
1 AGTTTCATAATCTAA
*
50519564 AGTTTCACAATCTAA
1 AGTTTCATAATCTAA
50519579 AGTTT
1 AGTTT
50519584 TAGTGTATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
15 30 0.68
16 14 0.32
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (15 bp):
AGTTTCATAATCTAA
Found at i:50519576 original size:30 final size:31
Alignment explanation
Indices: 50519518--50519583 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 31
50519508 ATTTCATAAT
*
50519518 AGTTTCATAATCTATAGATTTCATAATCTAA
1 AGTTTCATAATCTATAGATTTCACAATCTAA
*
50519549 AGTTTCATAGTCTATAG-TTTCACAATCTAA
1 AGTTTCATAATCTATAGATTTCACAATCTAA
50519579 AGTTT
1 AGTTT
50519584 TAGTGTATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 17 0.52
31 16 0.48
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (31 bp):
AGTTTCATAATCTATAGATTTCACAATCTAA
Found at i:50522745 original size:19 final size:19
Alignment explanation
Indices: 50522724--50522759 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
50522714 AAATAACATA
50522724 AAAACAATT-AAAAGAAAC
1 AAAACAATTGAAAAGAAAC
*
50522742 AAAAGAATTGAAAAGAAA
1 AAAACAATTGAAAAGAAA
50522760 TAGAAGGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.72, C:0.06, G:0.11, T:0.11
Consensus pattern (19 bp):
AAAACAATTGAAAAGAAAC
Found at i:50523047 original size:28 final size:28
Alignment explanation
Indices: 50523015--50523078 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
50523005 AATTGAAGAA
50523015 TAAATTGTAAATTTTGAGTAATAGGGAC
1 TAAATTGTAAATTTTGAGTAATAGGGAC
50523043 TAAATTGTAAATTTTGAGTAATAGGGAC
1 TAAATTGTAAATTTTGAGTAATAGGGAC
50523071 TAAATTGT
1 TAAATTGT
50523079 GAAAAATATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.39, C:0.03, G:0.20, T:0.38
Consensus pattern (28 bp):
TAAATTGTAAATTTTGAGTAATAGGGAC
Found at i:50523777 original size:37 final size:38
Alignment explanation
Indices: 50523677--50523779 Score: 100
Period size: 37 Copynumber: 2.7 Consensus size: 38
50523667 AACTTCAAGT
* **
50523677 CGATGAGACACTAGGTGTCAATTTACTACTTTAGATTAATT
1 CGATGAGACACTAGGTGTCAA-TT--TACTTCAGATTAAGC
* * * * *
50523718 CGATGAGGCAGTAAGTGCCAATTTACTTCAG-TTTAGC
1 CGATGAGACACTAGGTGTCAATTTACTTCAGATTAAGC
50523755 CGATGAGACACTAGGTGTCAATTTA
1 CGATGAGACACTAGGTGTCAATTTA
50523780 TTGCTTCAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
37 24 0.48
38 7 0.14
40 2 0.04
41 17 0.34
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (38 bp):
CGATGAGACACTAGGTGTCAATTTACTTCAGATTAAGC
Found at i:50523798 original size:40 final size:38
Alignment explanation
Indices: 50523677--50523811 Score: 119
Period size: 40 Copynumber: 3.4 Consensus size: 38
50523667 AACTTCAAGT
* *
50523677 CGATGAGACACTAGGTGTCAATTTACTACTTTAGATTAATT
1 CGATGAGACACTAGGTGTCAATTTA-T-CTTCAGATT-ATC
* * * * * *
50523718 CGATGAGGCAGTAAGTGCCAATTTA-CTTCAGTTTAGC
1 CGATGAGACACTAGGTGTCAATTTATCTTCAGATTATC
*
50523755 CGATGAGACACTAGGTGTCAATTTATTGCTTCAAATTATC
1 CGATGAGACACTAGGTGTCAATTTA-T-CTTCAGATTATC
* *
50523795 CGATGTGGCACTAGGTG
1 CGATGAGACACTAGGTG
50523812 CCAAACTGAT
Statistics
Matches: 74, Mismatches: 17, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
37 22 0.30
38 7 0.09
40 24 0.32
41 21 0.28
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (38 bp):
CGATGAGACACTAGGTGTCAATTTATCTTCAGATTATC
Found at i:50541395 original size:159 final size:159
Alignment explanation
Indices: 50541106--50541419 Score: 592
Period size: 159 Copynumber: 2.0 Consensus size: 159
50541096 CTTCAGCCTA
50541106 TACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTATCGG
1 TACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTATCGG
* * *
50541171 CAAGTAAGAAAATTGTTGTTTGGGTGATTGTTGATTGACTTACAAAATCGGCTCATTTTATTGCA
66 CAAGTAAGAAAAATGTTGCTTGGGTGATTGTTGATCGACTTACAAAATCGGCTCATTTTATTGCA
50541236 GTCAGGATTGATTGGTCACTTCATTCTAT
131 GTCAGGATTGATTGGTCACTTCATTCTAT
50541265 TACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTATCGG
1 TACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTATCGG
*
50541330 CAAGTAAGAAAAATGTTGCTTGGGTGATTGTTGATCGACTTACGAAATCGGCTCATTTTATTGCA
66 CAAGTAAGAAAAATGTTGCTTGGGTGATTGTTGATCGACTTACAAAATCGGCTCATTTTATTGCA
50541395 GTCAGGATTGATTGGTCACTTCATT
131 GTCAGGATTGATTGGTCACTTCATT
50541420 TATATTCAAG
Statistics
Matches: 151, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
159 151 1.00
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (159 bp):
TACTATTCCTCAATGGAAATGGGATTGTATCACAATGGATTTTGTAACGGGGTTACCTTTATCGG
CAAGTAAGAAAAATGTTGCTTGGGTGATTGTTGATCGACTTACAAAATCGGCTCATTTTATTGCA
GTCAGGATTGATTGGTCACTTCATTCTAT
Found at i:50543761 original size:43 final size:43
Alignment explanation
Indices: 50543711--50543861 Score: 153
Period size: 43 Copynumber: 3.5 Consensus size: 43
50543701 TATCCCAGAT
* * *
50543711 ATGGTCTTACATGTTATAACATATCGATGCCACTGTCCTAGAC
1 ATGGTCTTACACGTAATAACATATCGATGCCAATGTCCTAGAC
* * * *
50543754 AAGGTCTTACACGAAATCAA-TTAACGATGCCAATGTCCTAGAC
1 ATGGTCTTACACGTAAT-AACATATCGATGCCAATGTCCTAGAC
** * *
50543797 ATGGTCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATAACATAT-CGATGCCAATGTCCTAGAC
* *
50543840 ATGGTCTTACATGTAATCACAT
1 ATGGTCTTACACGTAATAACAT
50543862 CTTGATAACC
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
42 1 0.01
43 84 0.97
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATAACATATCGATGCCAATGTCCTAGAC
Found at i:50545342 original size:43 final size:43
Alignment explanation
Indices: 50545249--50545426 Score: 155
Period size: 45 Copynumber: 4.1 Consensus size: 43
50545239 ATAGGATTCT
* * * *
50545249 GATATATGTTTTCGTGTAAGACCACGTCTAGGATGTTGGCATC
1 GATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATC
* *
50545292 GATATATGTGTTTTCTTGTAAGACCATGTCTGGGACGTTGGGATC
1 G--ATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATC
* * * * ***
50545337 GATATGTGGTTACGAGTAAGACCATGTCTGGGACATCAACATC
1 GATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATC
* * * *
50545380 G-TATTTGATTT-GTGTAAGACCCTGTCTGGGGCAG-TGGCATC
1 GATATGTGTTTTCGTGTAAGACCATGTCTGGGAC-GTTGGCATC
50545421 GATATG
1 GATATG
50545427 AGATAACATG
Statistics
Matches: 105, Mismatches: 26, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
41 23 0.22
42 10 0.10
43 35 0.33
45 37 0.35
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
GATATGTGTTTTCGTGTAAGACCATGTCTGGGACGTTGGCATC
Found at i:50555634 original size:120 final size:120
Alignment explanation
Indices: 50555417--50555675 Score: 305
Period size: 120 Copynumber: 2.2 Consensus size: 120
50555407 TCGAATGATG
* * *
50555417 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
*
50555482 GTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGTACGAGTTA-CTAAA
66 GTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * **
50555537 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
50555600 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTGCGAGTTACTA-AATCCAGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
50555657 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50555676 TACATGATTC
Statistics
Matches: 120, Mismatches: 14, Indels: 11
0.83 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 94 0.78
121 8 0.07
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCAGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:50555649 original size:40 final size:40
Alignment explanation
Indices: 50555417--50555642 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
50555407 TCGAATGATG
* * *
50555417 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
50555457 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
50555497 TCCAGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
50555537 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50555577 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50555618 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50555643 AACGAGTAGC
Statistics
Matches: 168, Mismatches: 14, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 157 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50555656 original size:40 final size:40
Alignment explanation
Indices: 50555417--50555675 Score: 251
Period size: 40 Copynumber: 6.5 Consensus size: 40
50555407 TCGAATGATG
* * * * *
50555417 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAA
** *
50555457 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* **
50555497 TCCAGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
50555537 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
*
50555577 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* * * *
50555618 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTA-CTAAA
* *
50555657 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50555676 TACATGATTC
Statistics
Matches: 192, Mismatches: 21, Indels: 13
0.85 0.09 0.06
Matches are distributed among these distances:
39 16 0.08
40 166 0.86
41 10 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:50564797 original size:27 final size:27
Alignment explanation
Indices: 50564658--50564823 Score: 131
Period size: 27 Copynumber: 6.1 Consensus size: 27
50564648 GGTCGTTAAG
* **
50564658 ACCCTCGACTTGTAAAATTATTGAAAT
1 ACCCTCGATTTGTAAAATTATCAAAAT
* ** *
50564685 ACCCCCGGGTTGTAAAATTA-CTGAAAT
1 ACCCTCGATTTGTAAAATTATC-AAAAT
* * * *
50564712 ACCTTCGATTTGTGAAATTTTCCAAAT
1 ACCCTCGATTTGTAAAATTATCAAAAT
* *
50564739 ACCCCCGACTTGTAAAATTA-CTAAAAT
1 ACCCTCGATTTGTAAAATTATC-AAAAT
*
50564766 ACCCTCGGTTTGTAAAATTATCAAAAT
1 ACCCTCGATTTGTAAAATTATCAAAAT
* * *
50564793 ACCCT-TATAGTGTAAAATTACCAAAAT
1 ACCCTCGAT-TTGTAAAATTATCAAAAT
50564820 ACCC
1 ACCC
50564824 CTGTAGGGTA
Statistics
Matches: 110, Mismatches: 24, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
26 2 0.02
27 106 0.96
28 2 0.02
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (27 bp):
ACCCTCGATTTGTAAAATTATCAAAAT
Found at i:50564811 original size:81 final size:80
Alignment explanation
Indices: 50564658--50564824 Score: 187
Period size: 81 Copynumber: 2.1 Consensus size: 80
50564648 GGTCGTTAAG
* * * * *
50564658 ACCCTCGACTTGTAAAATTATTGAAATACCCCCGGGTTGTAAAATTACTGAAATACCTTCGATTT
1 ACCCCCGACTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTACTAAAATACCTTC-ATGT
* *
50564723 GTGAAATTTTCC-AAAT
65 GT-AAAATTACCAAAAT
* *
50564739 ACCCCCGACTTGTAAAATTACTAAAATACCCTCGGTTTGTAAAATTA-TCAAAATACCCTT-ATA
1 ACCCCCGACTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTACT-AAAATA-CCTTCAT-
50564802 GTGTAAAATTACCAAAAT
63 GTGTAAAATTACCAAAAT
50564820 ACCCC
1 ACCCC
50564825 TGTAGGGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
80 10 0.14
81 59 0.81
82 4 0.05
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.31
Consensus pattern (80 bp):
ACCCCCGACTTGTAAAATTACTAAAATACCCCCGGGTTGTAAAATTACTAAAATACCTTCATGTG
TAAAATTACCAAAAT
Found at i:50564813 original size:54 final size:54
Alignment explanation
Indices: 50564658--50564796 Score: 179
Period size: 54 Copynumber: 2.6 Consensus size: 54
50564648 GGTCGTTAAG
* ** ** *
50564658 ACCCTCGACTTGTAAAATTATTGAAATACCCCCGGGTTGTAAAATTACTGAAAT
1 ACCCTCGATTTGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAAT
* * * *
50564712 ACCTTCGATTTGTGAAATTTTCCAAATACCCCCGACTTGTAAAATTACTAAAAT
1 ACCCTCGATTTGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAAT
*
50564766 ACCCTCGGTTTGTAAAATTATCAAAATACCC
1 ACCCTCGATTTGTAAAATTATCAAAATACCC
50564797 TTATAGTGTA
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (54 bp):
ACCCTCGATTTGTAAAATTATCAAAATACCCCCGACTTGTAAAATTACTAAAAT
Found at i:50564834 original size:27 final size:27
Alignment explanation
Indices: 50564749--50564837 Score: 99
Period size: 27 Copynumber: 3.3 Consensus size: 27
50564739 ACCCCCGACT
* * *
50564749 TGTAAAATTACTAAAATACCCTCGGT-T
1 TGTAAAATTACCAAAATACCC-CTGTAG
* * *
50564776 TGTAAAATTATCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCCTGTAG
50564803 TGTAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACCCCTGTAG
*
50564830 GGTAAAAT
1 TGTAAAAT
50564838 GATTGTTTTG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 1 0.02
27 50 0.98
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCCTGTAG
Found at i:50565220 original size:22 final size:22
Alignment explanation
Indices: 50565192--50565235 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
50565182 TAATTTAATT
50565192 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTCTGTGCCAACCTAAAA
50565214 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTCTGTGCCAACCTAAAA
50565236 CATCTTGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (22 bp):
ATGGCTCTGTGCCAACCTAAAA
Found at i:50573825 original size:32 final size:32
Alignment explanation
Indices: 50573784--50573847 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
50573774 AGGAAACAGG
50573784 CCTACGAAGTCAATGCCTCATACGTCGAATAA
1 CCTACGAAGTCAATGCCTCATACGTCGAATAA
50573816 CCTACGAAGTCAATGCCTCATACGTCGAATAA
1 CCTACGAAGTCAATGCCTCATACGTCGAATAA
50573848 TTCAATCTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (32 bp):
CCTACGAAGTCAATGCCTCATACGTCGAATAA
Found at i:50580760 original size:40 final size:40
Alignment explanation
Indices: 50580701--50580908 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
50580691 CAATTGAATG
* * * *
50580701 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
50580741 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50580781 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
50580821 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
50580861 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
50580901 ATATCCGG
1 ATATCCGG
50580909 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:50580839 original size:80 final size:80
Alignment explanation
Indices: 50580702--50580908 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
50580692 AATTGAATGA
* * ** * * *
50580702 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
50580767 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
50580780 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
50580845 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
50580862 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
50580909 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:50587189 original size:40 final size:40
Alignment explanation
Indices: 50587059--50587211 Score: 137
Period size: 40 Copynumber: 3.9 Consensus size: 40
50587049 ATGGTAACCC
* * * * * * *
50587059 GCACCAAGGCCTACGGGACTTAACCCGGATATCACGA-TT
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * * ** *
50587098 GCACAAATGCCTTCAGGTCTTAGCCCGGATAGAATGACTC
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* *
50587138 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
* * *
50587178 GCACCATTGCCTTCGGGTCTTAACCCGGTTATAA
1 GCACCAATGCCTTCGGGTCTTAGCCCGGATATAA
50587212 TTTCCAGCAT
Statistics
Matches: 91, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
39 28 0.31
40 63 0.69
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
GCACCAATGCCTTCGGGTCTTAGCCCGGATATAACCACTA
Found at i:50594439 original size:79 final size:80
Alignment explanation
Indices: 50594296--50594503 Score: 190
Period size: 79 Copynumber: 2.6 Consensus size: 80
50594286 ACCTTCGGAG
* * ** * * * *
50594296 CTTAA-CCGGATATAGCTACTCGTTCAAACGCCTTCGGGACATAGCCCGGATATGGTAACCCGCA
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
50594360 CCAAGGCCTACGGGA
66 CCAAGGCCTACGGGA
* * * *
50594375 CTTAACCCGGATATCA-CGA-TTGCACAAATGCCTTCGGGTCTTAGCCCGGATA-GAATGACTCG
1 CTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATG-ATAACCCG
* * * *
50594437 CACGAATGCCTTCGGGT
64 CACCAAGGCCTACGGGA
* * * *
50594454 CTTAGCCCGGATATAGCCACTAGCACCATTGCCTTCGGGTCTTAACCCGG
1 CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGG
50594504 TTATAATTTC
Statistics
Matches: 104, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
78 2 0.02
79 65 0.62
80 36 0.35
81 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (80 bp):
CTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATGATAACCCGCA
CCAAGGCCTACGGGA
Found at i:50594448 original size:40 final size:40
Alignment explanation
Indices: 50594396--50594503 Score: 135
Period size: 40 Copynumber: 2.7 Consensus size: 40
50594386 TATCACGATT
** *
50594396 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
50594436 GCACGAATGCCTTCGGGTCTTAGCCCGGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
50594476 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
50594504 TTATAATTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.21, C:0.31, G:0.25, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:50596945 original size:28 final size:26
Alignment explanation
Indices: 50596890--50597002 Score: 145
Period size: 28 Copynumber: 4.2 Consensus size: 26
50596880 AGCATGGCTG
* *
50596890 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
50596916 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
50596944 CCAGAACAGAATATATGTGGCAGAGCCA
1 CCAGAACAG-ATA-ATGTGGCAGAGCCA
* *
50596972 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
50596999 CCAG
1 CCAG
50597003 GACGCTTCCT
Statistics
Matches: 78, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
26 6 0.08
27 32 0.41
28 38 0.49
29 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50596998 original size:55 final size:54
Alignment explanation
Indices: 50596890--50597002 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
50596880 AGCATGGCTG
*
50596890 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
50596944 CCAGAACAGAATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAG-ATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
50596999 CCAG
1 CCAG
50597003 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 9 0.17
55 26 0.49
56 18 0.34
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:50598391 original size:24 final size:24
Alignment explanation
Indices: 50598364--50598434 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
50598354 CTAGATTTCC
**
50598364 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50598388 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50598412 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
50598435 CTCCTGACAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:50604649 original size:28 final size:26
Alignment explanation
Indices: 50604599--50604713 Score: 122
Period size: 28 Copynumber: 4.2 Consensus size: 26
50604589 AGTATGGCTG
* *
50604599 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
50604625 CCAGATACATATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
50604653 CCAGAACAGATATATATGTGGCAGAGCCA
1 CCAGAACAG--ATA-ATGTGGCAGAGCCA
* *
50604682 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
50604710 CCAG
1 CCAG
50604714 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
26 6 0.08
27 14 0.18
28 31 0.41
29 23 0.30
30 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:50604684 original size:57 final size:54
Alignment explanation
Indices: 50604599--50604713 Score: 142
Period size: 57 Copynumber: 2.1 Consensus size: 54
50604589 AGTATGGCTG
* *
50604599 CCAGAACAGATAATGTGACAGAGTCACCAGATACATATAA-TCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * *
50604653 CCAGAACAGATATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAG--ATA-ATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
50604710 CCAG
1 CCAG
50604714 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 9 0.17
56 9 0.17
57 34 0.65
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:50604853 original size:26 final size:27
Alignment explanation
Indices: 50604817--50604880 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 27
50604807 AAAAATAACC
*
50604817 CTAAGGGTATAATTGTCAA-TTTACAT-
1 CTAAGGGTATAATGGT-AATTTTACATG
50604843 CTAAGGGTATAATGGTAATTTTACATG
1 CTAAGGGTATAATGGTAATTTTACATG
50604870 CATAAGGGTAT
1 C-TAAGGGTAT
50604881 TTCAGTAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 2 0.06
26 22 0.65
27 1 0.03
28 9 0.26
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.36
Consensus pattern (27 bp):
CTAAGGGTATAATGGTAATTTTACATG
Found at i:50606165 original size:24 final size:24
Alignment explanation
Indices: 50606138--50606208 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
50606128 CTAGATTTCC
** *
50606138 TCCCTTATCTGCTCCCAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
50606162 TCCCTCATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
50606186 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
50606209 CTCCTGACAG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.25, C:0.41, G:0.01, T:0.32
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:50607575 original size:47 final size:47
Alignment explanation
Indices: 50607519--50607613 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
50607509 TAAGTTGGAT
*
50607519 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
*
50607566 TTAAGCTTGTTAAATTTGTTCTTAATAATTCTAGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
50607613 T
1 T
50607614 AATTCCGGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAAGTTACTTAG
Found at i:50607611 original size:22 final size:22
Alignment explanation
Indices: 50607586--50607633 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
50607576 TAAATTTGTT
*
50607586 CTTAATAATTCTAGATAAGTTA
1 CTTAATAATTCCAGATAAGTTA
* *
50607608 CTTAGTAATTCCGGATAAGTTA
1 CTTAATAATTCCAGATAAGTTA
50607630 CTTA
1 CTTA
50607634 GTTAAGCTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.40
Consensus pattern (22 bp):
CTTAATAATTCCAGATAAGTTA
Found at i:50607655 original size:69 final size:69
Alignment explanation
Indices: 50607539--50607682 Score: 261
Period size: 69 Copynumber: 2.1 Consensus size: 69
50607529 TAAATTTGTT
* *
50607539 CTTAATAATTCCGGATAAGTTACTTAGTTAAGCTTGTTAAATTTGTTCTTAATAATTCTAGATAA
1 CTTAGTAATTCCGGATAAGTTACTTAGTTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAA
50607604 GTTA
66 GTTA
*
50607608 CTTAGTAATTCCGGATAAGTTACTTAGTTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAA
1 CTTAGTAATTCCGGATAAGTTACTTAGTTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAA
50607673 GTTA
66 GTTA
50607677 CTTAGT
1 CTTAGT
50607683 TAAAGAAAAT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (69 bp):
CTTAGTAATTCCGGATAAGTTACTTAGTTAAGCTTGTTAAATTTGTTCTTAATAATTCCAGATAA
GTTA
Found at i:50608529 original size:45 final size:45
Alignment explanation
Indices: 50608463--50608729 Score: 430
Period size: 45 Copynumber: 6.0 Consensus size: 45
50608453 ATATCATGCA
* *
50608463 ATACTATTCGAGCCTTTGAGCCTAGCATGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
50608508 ACACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
50608553 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTCAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
50608598 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
*
50608643 ATACTATTCGGGCCTTTGAGCCTAGCAAGCTATAATGCCGGTGAG
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
50608688 ATACTATTCGGG-CTTTGAGCCTAGCAGGCGA-AATACCGGTGA
1 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
50608730 ATGAATTCGG
Statistics
Matches: 208, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
43 10 0.05
44 17 0.08
45 181 0.87
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (45 bp):
ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:50609291 original size:16 final size:18
Alignment explanation
Indices: 50609260--50609292 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
50609250 AACTCGCTAC
50609260 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
50609278 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
50609293 AGCTAGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:50615214 original size:47 final size:47
Alignment explanation
Indices: 50615158--50615302 Score: 281
Period size: 47 Copynumber: 3.1 Consensus size: 47
50615148 TAAGTTGGAT
50615158 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
50615205 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
*
50615252 TTAAGCTTGTTAAATTTGTTCTTAATTATTCCGGATAAGTTACTTAG
1 TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
50615299 TTAA
1 TTAA
50615303 AGAAAATTTT
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (47 bp):
TTAAGCTTGTTAAATTTGTTCTTAATAATTCCGGATAAGTTACTTAG
Found at i:50616146 original size:45 final size:45
Alignment explanation
Indices: 50616082--50616207 Score: 175
Period size: 45 Copynumber: 2.8 Consensus size: 45
50616072 ATCGTACAGT
***
50616082 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGAC
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAATGAGAC
*
50616127 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAATGAGAT
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAATGAGAC
* * *
50616172 ACTATTCGGG-CTTCGAGCCTAGTAGGCGA-AATGCCA
1 ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCA
50616208 GTGAATGAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
43 7 0.09
44 16 0.22
45 51 0.69
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (45 bp):
ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAATGAGAC
Found at i:50620321 original size:40 final size:39
Alignment explanation
Indices: 50620196--50620401 Score: 187
Period size: 40 Copynumber: 5.2 Consensus size: 39
50620186 CGGAATACAA
* * * * *
50620196 CCGGATATAACCACATGCACGAATACATTCGGGTCTTAGC
1 CCGGATTTAA-CACTTGCACAAATGCCTTCGGGTCTTAGC
* ** *
50620236 CCGAATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* *
50620276 TCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
50620316 CCGGATTTAGTCACTAGCATAATTGCCTTCGGGTCTTAAC
1 CCGGATTTA-ACACTTGCACAAATGCCTTCGGGTCTTAGC
* * * *
50620356 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATTTAAC-ACTTGCACAAATGCCTTCGGGTCTTAGC
50620396 CCGGAT
1 CCGGAT
50620402 ATCATTTAAT
Statistics
Matches: 137, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
39 2 0.01
40 134 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
CCGGATTTAACACTTGCACAAATGCCTTCGGGTCTTAGC
Found at i:50620343 original size:80 final size:82
Alignment explanation
Indices: 50620196--50620403 Score: 217
Period size: 80 Copynumber: 2.6 Consensus size: 82
50620186 CGGAATACAA
* * * * * *
50620196 CCGGATATAACCACATGCACGAATACATTCGGGTCTTAGCCC-GA-ATAGAACGACTTGCACAAA
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGAACGACTAGCACAAA
*
50620259 TGCCTTCGGGTATTAGC
66 TGCCTTCGGGTATTAAC
* * * * *
50620276 TCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTTAG-TC-ACTAGCATAAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGAACGACTAGCACAAA
*
50620339 TGCCTTCGGGTCTTAAC
66 TGCCTTCGGGTATTAAC
* * ** * *
50620356 CCGGATTTAACTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
50620404 CATTTAATTG
Statistics
Matches: 105, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
80 99 0.94
81 3 0.03
82 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (82 bp):
CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATATAGAACGACTAGCACAAA
TGCCTTCGGGTATTAAC
Found at i:50622909 original size:12 final size:13
Alignment explanation
Indices: 50622885--50622913 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
50622875 GGGCTATAAC
50622885 TATTGCATTTATT
1 TATTGCATTTATT
50622898 TATTGC-TTTATT
1 TATTGCATTTATT
50622910 TATT
1 TATT
50622914 CATGATGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:50634310 original size:5 final size:5
Alignment explanation
Indices: 50634300--50634333 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
50634290 TTTCTTTGAG
50634300 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
50634334 TAGTATAAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:50636018 original size:28 final size:28
Alignment explanation
Indices: 50635982--50636076 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
50635972 ATATTGTGAT
* *
50635982 AGAGTCACCAGATACAGATAATTGTGGC
1 AGAGCCACCAGATACAGATATTTGTGGC
* * *
50636010 AGGGCCACCAGAAATAGATATTTGTGGC
1 AGAGCCACCAGATACAGATATTTGTGGC
*
50636038 AGAGCCACTAGAT-CAGATATTTGTGGC
1 AGAGCCACCAGATACAGATATTTGTGGC
50636065 AGAGCCACCAGA
1 AGAGCCACCAGA
50636077 ACACTTCCTT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 24 0.42
28 33 0.58
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (28 bp):
AGAGCCACCAGATACAGATATTTGTGGC
Found at i:50636055 original size:55 final size:55
Alignment explanation
Indices: 50635967--50636077 Score: 152
Period size: 55 Copynumber: 2.0 Consensus size: 55
50635957 TGGCTGCAAT
* * *
50635967 AATAGATATTGTGATAGAGTCACCAGATACAGATAATTGTGGCAGGGCCACCAGA
1 AATAGATATTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
* * *
50636022 AATAGATATTTGTGGCAGAGCCACTAGAT-CAGATATTTGTGGCAGAGCCACCAGA
1 AATAGATA-TTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
50636077 A
1 A
50636078 CACTTCCTTC
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 33 0.67
56 16 0.33
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (55 bp):
AATAGATATTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCACCAGA
Found at i:50637181 original size:17 final size:17
Alignment explanation
Indices: 50637159--50637191 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
50637149 TCGGCTATGG
50637159 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
50637176 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
50637192 GAAGGGTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:50641211 original size:40 final size:40
Alignment explanation
Indices: 50641103--50641212 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
50641093 ATTGAATGAT
* * * * *
50641103 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
50641143 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
50641183 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
50641213 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:50641227 original size:40 final size:39
Alignment explanation
Indices: 50641103--50641251 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 39
50641093 ATTGAATGAT
* * * * * * *
50641103 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
50641143 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
50641183 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
50641223 ATCC-GGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
50641252 GGGTTACCAT
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 22 0.24
40 63 0.69
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:50649250 original size:40 final size:40
Alignment explanation
Indices: 50649143--50649251 Score: 139
Period size: 40 Copynumber: 2.8 Consensus size: 40
50649133 ATTGAATGAT
* * * * *
50649143 ATCC-GGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
50649182 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
50649222 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
50649252 AAATTGTGAA
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
39 4 0.07
40 55 0.93
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:50649266 original size:40 final size:39
Alignment explanation
Indices: 50649180--50649290 Score: 120
Period size: 40 Copynumber: 2.8 Consensus size: 39
50649170 GCTGGTAATT
*
50649180 ACATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGAC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
* *
50649219 TACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-
1 -ACATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGAC
* *
50649261 A-ATCC-GGTTAAGTCCCGAAGGCCTTTGTGC
1 ACATCCGGGTTAAGACCCGAAGGCATTTGTGC
50649291 GGGTTACCAT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
39 22 0.35
40 34 0.55
41 1 0.02
43 5 0.08
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ACATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC
Found at i:50659229 original size:28 final size:28
Alignment explanation
Indices: 50659174--50659287 Score: 153
Period size: 28 Copynumber: 4.2 Consensus size: 28
50659164 AGCATGGCTG
* * *
50659174 CCAGA-ACAGATA-TTGTGACAAAGTCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
* *
50659200 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
*
50659228 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
50659256 CCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATATTTGTGGCAGAGCCA
50659283 CCAGA
1 CCAGA
50659288 ACGCTTCCTG
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.06
27 33 0.42
28 40 0.51
ACGTcount: A:0.35, C:0.22, G:0.25, T:0.18
Consensus pattern (28 bp):
CCAGATACAGATATTTGTGGCAGAGCCA
Found at i:50659260 original size:22 final size:24
Alignment explanation
Indices: 50659206--50659285 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 24
50659196 GTCACCAGAT
* *
50659206 ACAGATAATTGTGGCAGGGCCACC
1 ACAGATATTTGTGGCAGAGCCACC
50659230 AGAAACAGATATTTGTGGCAGAGCCACC
1 ----ACAGATATTTGTGGCAGAGCCACC
50659258 AGATCAGATATTTGTGGCAGAGCCACC
1 --A-CAGATATTTGTGGCAGAGCCACC
50659285 A
1 A
50659286 GAACGCTTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
25 1 0.02
26 2 0.04
27 23 0.48
28 22 0.46
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.19
Consensus pattern (24 bp):
ACAGATATTTGTGGCAGAGCCACC
Found at i:50659266 original size:55 final size:55
Alignment explanation
Indices: 50659174--50659288 Score: 162
Period size: 55 Copynumber: 2.1 Consensus size: 55
50659164 AGCATGGCTG
* *
50659174 CCAG-AACAGATATTGTGACAAAGTCACCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATATTGTGACAAAGCCACCAGATACAGATAATTGTGGCAGAGCCA
* * *
50659228 CCAGAAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATA-TTGTGACAAAGCCACCAGATACAGATAATTGTGGCAGAGCCA
50659283 CCAGAA
1 CCAGAA
50659289 CGCTTCCTGC
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 4 0.07
55 33 0.61
56 17 0.31
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAAAGCCACCAGATACAGATAATTGTGGCAGAGCCA
Found at i:50660392 original size:17 final size:17
Alignment explanation
Indices: 50660370--50660402 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
50660360 TCGGCTATGG
50660370 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
50660387 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
50660403 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:50670617 original size:27 final size:27
Alignment explanation
Indices: 50670572--50670682 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
50670562 TGGCTGCCAA
** *
50670572 AACAGATA-TTGTGATAGAGTCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
*
50670598 ATACAAATA-TTGTGGCAGAGCCACCAG
1 A-ACAGATATTTGTGGCAGAGCCACCAG
*
50670625 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATATTTGTGGCAGAGCCACCAG
50670652 AAACAGATATTTGTGGCATG-GCCACCAG
1 -AACAGATATTTGTGGCA-GAGCCACCAG
50670680 AAC
1 AAC
50670683 GCTTCCACCA
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 42 0.57
28 25 0.34
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
AACAGATATTTGTGGCAGAGCCACCAG
Found at i:50670665 original size:28 final size:28
Alignment explanation
Indices: 50670592--50670681 Score: 130
Period size: 28 Copynumber: 3.3 Consensus size: 28
50670582 GTGATAGAGT
* * *
50670592 CACCAGATACAAATA-TTGTGGCAGAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
50670619 CACCAG-AACAGATATTTGTGGCATAGC
1 CACCAGAAACAGATATTTGTGGCATAGC
*
50670646 CACCAGAAACAGATATTTGTGGCATGGC
1 CACCAGAAACAGATATTTGTGGCATAGC
50670674 CACCAGAA
1 CACCAGAA
50670682 CGCTTCCACC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
26 6 0.11
27 23 0.40
28 28 0.49
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (28 bp):
CACCAGAAACAGATATTTGTGGCATAGC
Found at i:50676997 original size:68 final size:64
Alignment explanation
Indices: 50676850--50677003 Score: 166
Period size: 68 Copynumber: 2.3 Consensus size: 64
50676840 TTCACCTGGA
* * * *
50676850 ACCACGCATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTATACATGGTGTACACATAGT
1 ACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGC
* * * *
50676914 ATCACCCATGCGACCTAGCTACATCATAATGCCTTGTAGCTCTCTTGTACACATGATGTGCAC-T
1 ACCACACATGCGACCTAGCTACAT-AT-AT-CC-CGTAGCTCTCTTGTACACATGATGTACACAT
50676978 CAGC
62 -AGC
* *
50676982 ACCATACATGTGACCTAGCTAC
1 ACCACACATGCGACCTAGCTAC
50677004 GTTCCATCTA
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
64 22 0.30
65 2 0.03
66 2 0.03
67 3 0.04
68 45 0.61
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (64 bp):
ACCACACATGCGACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACATAGC
Found at i:50677706 original size:30 final size:30
Alignment explanation
Indices: 50677672--50677732 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
50677662 TCATTAACGC
*
50677672 AAACTTTGGAAAAATTACAGTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
50677702 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
50677732 A
1 A
50677733 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.10, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:50682675 original size:20 final size:20
Alignment explanation
Indices: 50682650--50682696 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
50682640 TTATTAAGGA
50682650 AATGGACCATTAACATGGTT
1 AATGGACCATTAACATGGTT
50682670 AATGGACCATTAACATGGTT
1 AATGGACCATTAACATGGTT
50682690 AATGGAC
1 AATGGAC
50682697 TTTTATGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
AATGGACCATTAACATGGTT
Found at i:50683656 original size:42 final size:44
Alignment explanation
Indices: 50683578--50683685 Score: 109
Period size: 42 Copynumber: 2.5 Consensus size: 44
50683568 ATTGGTTTGA
50683578 GATTTACGTGTAAGACCATGTCTAGGACATCAGCATCG-TATAT
1 GATTTACGTGTAAGACCATGTCTAGGACATCAGCATCGATATAT
* * *
50683621 GATTT-CGTGTAAGACCTTGTCT-GAGACAGT-GGCATCGATATTT
1 GATTTACGTGTAAGACCATGTCTAG-GACA-TCAGCATCGATATAT
* * *
50683664 GA-TTACATGAAAGACCACGTCT
1 GATTTACGTGTAAGACCATGTCT
50683686 GGGATGTTGG
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
41 1 0.02
42 28 0.52
43 25 0.46
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.31
Consensus pattern (44 bp):
GATTTACGTGTAAGACCATGTCTAGGACATCAGCATCGATATAT
Found at i:50685946 original size:20 final size:20
Alignment explanation
Indices: 50685921--50685959 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
50685911 AGGGACTAAA
* *
50685921 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
50685941 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
50685960 TGTCAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:50709086 original size:51 final size:51
Alignment explanation
Indices: 50709011--50709112 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
50709001 AACCTACTGT
50709011 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGGCAGAAGTTTCAA
1 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGGCAGAAGTTTCAA
*
50709062 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTGTGGCAGAAGTTTCAA
1 CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGGCAGAAGTTTCAA
50709113 ACCTCCTAGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (51 bp):
CTGTTAAAAATTTACCTATTGAATTCACTGAATTTATGGCAGAAGTTTCAA
Found at i:50709374 original size:72 final size:72
Alignment explanation
Indices: 50709257--50709401 Score: 254
Period size: 72 Copynumber: 2.0 Consensus size: 72
50709247 TTAACCCAAT
**
50709257 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAATGGTGAATTGCTT
1 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
50709322 CATGTTG
66 CATGTTG
*
50709329 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTGAGAACAGTGAATTGCTT
1 ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
*
50709394 CGTGTTG
66 CATGTTG
50709401 A
1 A
50709402 ATCTGATAAA
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (72 bp):
ATGATGCAGTGGTGAACTGTAAACAGAAATATATTGTATTGAAATGTAAGAACAGTGAATTGCTT
CATGTTG
Found at i:50716459 original size:29 final size:29
Alignment explanation
Indices: 50716397--50716499 Score: 102
Period size: 29 Copynumber: 3.6 Consensus size: 29
50716387 GTGACGAGAT
* *
50716397 TGGCACTGAGTGTGCGAGCTTGTAAT-GTA
1 TGGCACTAAGTGTGCGAGCTTG-AATCATA
* * * *
50716426 CGGCACTAAGTGTGTGAGTTTGGA-CTATA
1 TGGCACTAAGTGTGCGAGCTTGAATC-ATA
* *
50716455 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAATCATA
50716484 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50716500 TGATTGAGTA
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
28 1 0.02
29 56 0.97
30 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGAATCATA
Found at i:50724061 original size:29 final size:29
Alignment explanation
Indices: 50723999--50724101 Score: 118
Period size: 29 Copynumber: 3.6 Consensus size: 29
50723989 GTGACGAGAT
* * *
50723999 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
50724028 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
50724057 TGGCACTATGTGTGCGGGCTT-GAATCATA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
50724086 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
50724102 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:50726282 original size:38 final size:38
Alignment explanation
Indices: 50726231--50726322 Score: 175
Period size: 38 Copynumber: 2.4 Consensus size: 38
50726221 CTGCCCCGTA
*
50726231 CCAGCCCTACACTCTATGTGGGGAATATCTCAACCCGC
1 CCAGCCCTACACTCCATGTGGGGAATATCTCAACCCGC
50726269 CCAGCCCTACACTCCATGTGGGGAATATCTCAACCCGC
1 CCAGCCCTACACTCCATGTGGGGAATATCTCAACCCGC
50726307 CCAGCCCTACACTCCA
1 CCAGCCCTACACTCCA
50726323 CAGTTGCAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.24, C:0.41, G:0.16, T:0.18
Consensus pattern (38 bp):
CCAGCCCTACACTCCATGTGGGGAATATCTCAACCCGC
Found at i:50731452 original size:27 final size:29
Alignment explanation
Indices: 50731422--50731506 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
50731412 ACGCAAGAGC
*
50731422 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
50731449 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
50731478 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
50731507 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:50731466 original size:29 final size:29
Alignment explanation
Indices: 50731434--50731506 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
50731424 ATAGTGAATC
50731434 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
50731463 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
50731492 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50731507 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:50738610 original size:27 final size:29
Alignment explanation
Indices: 50738580--50738664 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
50738570 ACGCAAGAGC
*
50738580 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
50738607 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
50738636 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
50738665 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:50738624 original size:29 final size:29
Alignment explanation
Indices: 50738592--50738664 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
50738582 ATAGTGAATC
50738592 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
50738621 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
50738650 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50738665 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Done.