Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 172 of 328
Found at i:50749370 original size:41 final size:41
Alignment explanation
Indices: 50749325--50749442 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
50749315 TGAAAGATAA
50749325 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
50749366 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50749396 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
50749437 ATGTAG
1 ATGTAG
50749443 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:50749381 original size:71 final size:71
Alignment explanation
Indices: 50749293--50749456 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
50749283 GAGATGTATC
50749293 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50749358 AGGACA
66 AGGACA
50749364 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
50749429 AGGACA
66 AGGACA
50749435 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
50749457 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:50756063 original size:27 final size:29
Alignment explanation
Indices: 50756033--50756117 Score: 84
Period size: 29 Copynumber: 3.0 Consensus size: 29
50756023 ACGCAAGAGC
*
50756033 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
50756060 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
50756089 ATATATTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
50756118 GTACAATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.10
28 3 0.06
29 43 0.84
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.36
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:50756077 original size:29 final size:29
Alignment explanation
Indices: 50756045--50756117 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
50756035 ATAGTGAATC
50756045 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
50756074 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
50756103 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50756118 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:50757917 original size:24 final size:24
Alignment explanation
Indices: 50757885--50757954 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
50757875 CTGTCAGGAG
50757885 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
*
50757909 AGGATTTAGAAGTTGATAA-GGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
50757932 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
50757955 GGAAATCTAG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 20 0.49
24 21 0.51
ACGTcount: A:0.37, C:0.01, G:0.36, T:0.26
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:50757949 original size:23 final size:23
Alignment explanation
Indices: 50757880--50757952 Score: 101
Period size: 23 Copynumber: 3.1 Consensus size: 23
50757870 AAAGTCTGTC
*
50757880 AGGAGAGGATTTAGGAGTTGATA
1 AGGATAGGATTTAGGAGTTGATA
*
50757903 AGGGATAGGATTTAGAAGTTGATA
1 A-GGATAGGATTTAGGAGTTGATA
**
50757927 AGGATAGGATTTAGGAGCAGATA
1 AGGATAGGATTTAGGAGTTGATA
50757950 AGG
1 AGG
50757953 GAGGAAATCT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 23 0.52
24 21 0.48
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (23 bp):
AGGATAGGATTTAGGAGTTGATA
Found at i:50759248 original size:25 final size:25
Alignment explanation
Indices: 50759210--50759257 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
50759200 ACCCTTATGC
50759210 ATGTAAAATTACCATTATACCCTAG
1 ATGTAAAATTACCATTATACCCTAG
50759235 ATGT-AAATTGACCATTATACCCT
1 ATGTAAAATT-ACCATTATACCCT
50759258 TAGGGTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (25 bp):
ATGTAAAATTACCATTATACCCTAG
Found at i:50759451 original size:28 final size:27
Alignment explanation
Indices: 50759364--50759476 Score: 97
Period size: 28 Copynumber: 4.1 Consensus size: 27
50759354 AGGAAGCGTC
* *
50759364 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATATGTAT
* *
50759391 CTGGTGGCTCTG-CACATATATATCTGT
1 CTGGTGGCTCTGCCACAT-TATATGTAT
*
50759418 GATGGTGGCTCTGCCACGATTATATGTAT
1 -CTGGTGGCTCTGCCAC-ATTATATGTAT
* * *
50759447 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATATGTAT
50759473 CTGG
1 CTGG
50759477 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.03
26 12 0.17
27 20 0.29
28 24 0.34
29 10 0.14
30 2 0.03
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATATGTAT
Found at i:50764393 original size:93 final size:93
Alignment explanation
Indices: 50764286--50764456 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50764276 GCCCCTAAGT
* *
50764286 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50764351 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50764379 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50764444 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50764457 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50764453 original size:46 final size:46
Alignment explanation
Indices: 50764281--50764453 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
50764271 AACCCGCCCC
* * *
50764281 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
50764327 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
50764375 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50764420 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50764454 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50771955 original size:93 final size:93
Alignment explanation
Indices: 50771848--50772018 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
50771838 GCCCCTAAGT
* *
50771848 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50771913 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
50771941 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
50772006 CGAGTTCGGATGC
66 CGAGTTCGGATGC
50772019 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50772015 original size:46 final size:46
Alignment explanation
Indices: 50771843--50772015 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
50771833 AACCCGCCCC
* * *
50771843 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
50771889 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
50771937 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
50771982 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50772016 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:50773953 original size:48 final size:48
Alignment explanation
Indices: 50773895--50774214 Score: 340
Period size: 48 Copynumber: 6.7 Consensus size: 48
50773885 TATGTGTGCT
* *
50773895 AGTGTAAGACCATGTCTGGGACATGGCGTTGGCCATGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * * *
50773943 AGTGTAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * * * *
50773991 AGTATAAGACCATGTTTGGGACATGGGATCGG-CATTGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGCC
* * ** *
50774039 AGTGTAAGACCATGTCTGAGACATAGCATCGGCCACAACATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
* * * *
50774087 AGTATAAGACCATGTCTGGGACATGGCATCGG-CATTGAGATAAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-TGATATGAGAGCC
* * *
50774135 AGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGACATGTGAGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-GATATGAGAGCC
* * *
50774183 AGTGTAAGACCATGTTTTGAACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
50774215 TAATTCATCC
Statistics
Matches: 224, Mismatches: 43, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
47 4 0.02
48 217 0.97
49 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCC
Found at i:50774143 original size:144 final size:144
Alignment explanation
Indices: 50773882--50774214 Score: 420
Period size: 144 Copynumber: 2.3 Consensus size: 144
50773872 GACATTTGGG
* * * ** * *
50773882 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTTGGCCATGATATGAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCACAACATGAGAGCCAGTA
* * * *
50773947 TAAGACCATGTTTGGAACATGGCATCGGCGATGTTGTGAGAGCCAGTATAAGACCATGTTTGGGA
66 TAAGACCATGTCTGGAACATGGCATCGGCGATGTAGTAAGAGCCAGTATAAGACCATGTCTGGGA
*
50774012 CATGGGATCGGCAT
131 CATGGCATCGGCAT
*
50774026 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATAGCATCGGCCACAACATGAGAGCCAGTA
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCACAACATGAGAGCCAGTA
* * *
50774091 TAAGACCATGTCTGGGACATGGCATCGGC-AT-TGAGATAAGAGCTAGTGTAAGACCATGTCTGG
66 TAAGACCATGTCTGGAACATGGCATCGGCGATGT-AG-TAAGAGCCAGTATAAGACCATGTCTGG
*
50774154 GACATGGCATCGGCCT
129 GACATGGCATCGGCAT
* * * * *
50774170 CGACATGTGAGCAAGTGTAAGACCATGTTTTGA-ACATGGCATCGG
1 TGATATGTGTGCTAGTGTAAGACCATG-TCTGAGACATGGCATCGG
50774215 TAATTCATCC
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
142 1 0.01
143 3 0.02
144 155 0.95
145 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (144 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCGGCCACAACATGAGAGCCAGTA
TAAGACCATGTCTGGAACATGGCATCGGCGATGTAGTAAGAGCCAGTATAAGACCATGTCTGGGA
CATGGCATCGGCAT
Found at i:50774207 original size:96 final size:96
Alignment explanation
Indices: 50773899--50774214 Score: 375
Period size: 96 Copynumber: 3.3 Consensus size: 96
50773889 TGTGCTAGTG
* * * * *
50773899 TAAGACCATGTCTGGGACATGGCGTTGGCCA-TGATATGAGAGCCAGTGTAAGACCATGTTTGGA
1 TAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGAGAGCTAGTGTAAGACCATGTCTGGG
* ***
50773963 ACATGGCATCGGCGAT-GTTGTGAGAGCCAGTA
65 ACATGGCATCGGC-CTCGACATGAGAGCCAGTA
* * * * *
50773995 TAAGACCATGTTTGGGACATGGGATCGGCATTGATATGTGTGCTAGTGTAAGACCATGTCTGAGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGA
* * *
50774060 CATAGCATCGGCCACAACATGAGAGCCAGTA
66 CATGGCATCGGCCTCGACATGAGAGCCAGTA
* *
50774091 TAAGACCATGTCTGGGACATGGCATCGGCATTGAGATAAGAGCTAGTGTAAGACCATGTCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGA
* * *
50774156 CATGGCATCGGCCTCGACATGTGAGCAAGTG
66 CATGGCATCGGCCTCGACATGAGAGCCAGTA
* * *
50774187 TAAGACCATGTTTTGAACATGGCATCGG
1 TAAGACCATGTCTGGGACATGGCATCGG
50774215 TAATTCATCC
Statistics
Matches: 185, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
95 2 0.01
96 183 0.99
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (96 bp):
TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCCTCGACATGAGAGCCAGTA
Found at i:50780284 original size:37 final size:37
Alignment explanation
Indices: 50780226--50780333 Score: 162
Period size: 37 Copynumber: 2.9 Consensus size: 37
50780216 GCTCAGACGG
* * *
50780226 AATCTCCACACGAAGTTATCGGGTCTTACCGGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
50780263 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
* *
50780300 AATCTCCACACGTAGTCATCGAGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
50780334 ATATATTTCC
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 64 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:50780452 original size:48 final size:48
Alignment explanation
Indices: 50780378--50780761 Score: 633
Period size: 48 Copynumber: 8.0 Consensus size: 48
50780368 TGTTACAACA
* *
50780378 TTCACATTAGCCATTCGGCTTTACCACATATTCATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * * *
50780426 TTAACATTAGCCATTCGGTTTTACCACATATACATATCACACATGTAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
50780474 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
50780522 TTCACATTAGCCATTCGGCTTTATCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* * * *
50780570 TTCACATTCGCCATTCGGCTTTACCACATCTACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
50780618 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
50780666 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
* *
50780714 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
50780762 ATATATTTAT
Statistics
Matches: 310, Mismatches: 26, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 310 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
Found at i:50784267 original size:40 final size:40
Alignment explanation
Indices: 50784218--50784489 Score: 445
Period size: 40 Copynumber: 6.8 Consensus size: 40
50784208 CCAGCATGAT
* *
50784218 TGCTCTTCGGGACCTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
50784258 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
50784298 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
*
50784338 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
50784378 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* *
50784418 TGCTCTTTGGGATTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
* * * *
50784458 TGCTCTTCGGGATTTAGCCCGGACATATCACT
1 TGCTCTTCGGGACTTAGTCCGGATACATCACT
50784490 CTCAATTCTC
Statistics
Matches: 218, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 218 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
Found at i:50787149 original size:39 final size:40
Alignment explanation
Indices: 50787049--50787272 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
50787039 TCGAATGATG
* *
50787049 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAT
*
50787088 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
50787129 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50787168 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50787207 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50787246 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50787273 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
39 75 0.46
40 78 0.48
41 11 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:50787240 original size:79 final size:80
Alignment explanation
Indices: 50787049--50787272 Score: 294
Period size: 79 Copynumber: 2.8 Consensus size: 80
50787039 TCGAATGATG
* * * *
50787049 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTATATCCGGGCTAAGACCCGAAGGCATT
*
50787113 TGTGCGAGTTACTAAT
65 TGTGCGAGTTACTAAA
* *
50787129 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-ATTCCGGGTTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGACCCGAAGGCATT
50787191 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
* * * * *
50787207 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
50787272 G
66 G
50787273 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 36 0.29
79 57 0.45
80 33 0.26
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:50787294 original size:79 final size:79
Alignment explanation
Indices: 50787049--50787305 Score: 238
Period size: 79 Copynumber: 3.3 Consensus size: 79
50787039 TCGAATGATG
* * * * * *
50787049 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACT-ATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGA-GTTACTAATA-CCGGGCTAAG-CCCGAAGGCAT
** *
50787112 TTGTGCGAGTTACTAAT
63 TTGAACGAGTTACTAAA
* * * * *
50787129 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGTTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTG
**
50787193 TGCGAGTTACTAAA
66 AACGAGTTACTAAA
*
50787207 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
50787271 TGAACGAG-TAGCTATA
64 TGAACGAGTTA-CTAAA
* *
50787287 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
50787306 TACGTGATTC
Statistics
Matches: 152, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 37 0.24
79 70 0.46
80 45 0.30
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTTACTAAA
Found at i:50794930 original size:46 final size:46
Alignment explanation
Indices: 50794880--50795004 Score: 196
Period size: 46 Copynumber: 2.7 Consensus size: 46
50794870 TGAGCATCCA
* *
50794880 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
*
50794926 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
* * *
50794972 AGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50795005 GCGGGTTACA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
Found at i:50797608 original size:39 final size:40
Alignment explanation
Indices: 50797508--50797731 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
50797498 TCGAATGATG
* * *
50797508 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
*
50797549 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
50797588 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50797627 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50797666 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
50797705 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
50797732 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
39 79 0.48
40 76 0.46
41 9 0.05
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:50797745 original size:40 final size:41
Alignment explanation
Indices: 50797508--50797738 Score: 230
Period size: 40 Copynumber: 5.8 Consensus size: 41
50797498 TCGAATGATG
* * * *
50797508 TCCGGGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACTAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTATAA
* * * *
50797548 TTCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGAGCGAGTTACTATAA
* *
50797588 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAA
* *
50797627 TCCGGGTTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAA
*
50797666 TCCGGGTTAAGTCCCGAAGGCATTT-ATGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTATAA
* *
50797707 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
50797739 AGCTATATCT
Statistics
Matches: 169, Mismatches: 14, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
39 75 0.44
40 83 0.49
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTATAA
Found at i:50797762 original size:79 final size:79
Alignment explanation
Indices: 50797561--50797764 Score: 218
Period size: 79 Copynumber: 2.6 Consensus size: 79
50797551 GGACTAAGAT
** * * * *
50797561 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTTACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTATGCGAGTTACTA
* *
50797625 ATTCCGGGTTAAGC
66 ATACCGGGCTAAGC
** *
50797639 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTATGCGAGTTACTA
*
50797703 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* * *
50797719 CCGAAGGCATTTGAACGAG-TAGCTATAT-CTGGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
50797765 TACGTGATTC
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 35 0.32
79 50 0.46
80 23 0.21
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTATGCGAGTTACTA
ATACCGGGCTAAGC
Found at i:50805296 original size:14 final size:15
Alignment explanation
Indices: 50805270--50805299 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
50805260 ATCAAAAGAA
50805270 AAATAAGAATAAAAT
1 AAATAAGAATAAAAT
50805285 AAATAA-AATAAAAT
1 AAATAAGAATAAAAT
50805299 A
1 A
50805300 GGAGGATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (15 bp):
AAATAAGAATAAAAT
Found at i:50810595 original size:13 final size:13
Alignment explanation
Indices: 50810573--50810605 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
50810563 AAGGGTTTGT
50810573 TTAT-TAAACTAA
1 TTATCTAAACTAA
50810585 TTATCTAAACTAA
1 TTATCTAAACTAA
*
50810598 TTAACTAA
1 TTATCTAA
50810606 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:50812486 original size:13 final size:15
Alignment explanation
Indices: 50812458--50812490 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
50812448 AAGTTTGTAA
50812458 TATTTTATATTATGT
1 TATTTTATATTATGT
50812473 TATTTT-TA-TATGT
1 TATTTTATATTATGT
50812486 TATTT
1 TATTT
50812491 AATTTAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 10 0.56
14 2 0.11
15 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.70
Consensus pattern (15 bp):
TATTTTATATTATGT
Found at i:50812652 original size:35 final size:32
Alignment explanation
Indices: 50812571--50812653 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 32
50812561 ACTATATATA
50812571 AAAAAATTCAATAAATAAAATATATATAATTATT
1 AAAAAATT-AA-AAATAAAATATATATAATTATT
* * *
50812605 -AAATATT-AAAATAAAATAATATATATTTTTTT
1 AAAAAATTAAAAATAAAAT-ATATATA-ATTATT
50812637 AAAAAATTAACAAATAA
1 AAAAAATTAA-AAATAA
50812654 TATGGGTAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
30 9 0.22
31 8 0.20
32 4 0.10
33 12 0.30
34 1 0.03
35 6 0.15
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (32 bp):
AAAAAATTAAAAATAAAATATATATAATTATT
Found at i:50820646 original size:39 final size:39
Alignment explanation
Indices: 50820525--50820663 Score: 174
Period size: 40 Copynumber: 3.5 Consensus size: 39
50820515 GGATATAAGG
* *
50820525 ACTCGCTCAAATGCCTTCGGGAC-AAACCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAA-CCCGGTT-TAGTA
*
50820565 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCC-GGTTTAGTA
*
50820605 ACTCGCACAAATGCCTTCGGG-CTTAACCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGG-TTTAGTA
* *
50820644 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
50820664 ATCTTAGTCC
Statistics
Matches: 89, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.36
40 49 0.55
41 6 0.07
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGTTTAGTA
Found at i:50828601 original size:40 final size:40
Alignment explanation
Indices: 50828522--50828659 Score: 174
Period size: 39 Copynumber: 3.5 Consensus size: 40
50828512 GGATATAACG
* *
50828522 ACTCGCTCAAATGCCTTCGGGAC-AAACCC-GGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTT-TAGTA
*
50828561 ACTCGCACGAATGCCTTCGGGACTTAACCCGGGTTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* * *
50828601 ACTCGCACAAATGCCTTCGGG-CTTAGCCCGGATTTATTA
1 ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
* *
50828640 ACTCGCACGAACGCCTTCGG
1 ACTCGCACAAATGCCTTCGG
50828660 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 54 0.61
40 30 0.34
41 4 0.05
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAACCCGGGTTTAGTA
Found at i:50837672 original size:40 final size:39
Alignment explanation
Indices: 50837507--50837690 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
50837497 AAATTGAATG
* * *
50837507 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
50837547 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
50837587 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
50837627 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
50837666 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
50837691 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:50837715 original size:80 final size:81
Alignment explanation
Indices: 50837547--50837735 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
50837537 GCTGGAAATT
* * * *
50837547 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
50837612 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
50837628 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
50837691 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
50837707 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
50837736 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:50840080 original size:40 final size:40
Alignment explanation
Indices: 50840034--50840178 Score: 200
Period size: 40 Copynumber: 3.6 Consensus size: 40
50840024 CAATATCCCG
* * *
50840034 CACACTATGTGCCATACATAACCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
* * *
50840074 CACACTAAGTGCCATATATAGCCGAAGCTATGTCGAATCA
1 CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
* * *
50840114 CACACTAAGTGCCATATATAGCCGAAGCTATATCATATCG
1 CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
*
50840154 CACACTAAGTGCCATAAATAACCGA
1 CACACTAAGTGCCATATATAACCGA
50840179 TTTTTCGTCG
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 94 1.00
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAACCGAAGCTATATCAAATCA
Found at i:50847091 original size:23 final size:23
Alignment explanation
Indices: 50847061--50847107 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
50847051 AGCTTTCGAT
*
50847061 AATCTATAAAACAAAGGAAAGTA
1 AATCTATAAAACAAAAGAAAGTA
50847084 AATCTATAAAACAAAAGAAAGTA
1 AATCTATAAAACAAAAGAAAGTA
50847107 A
1 A
50847108 CCACGTCAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.17
Consensus pattern (23 bp):
AATCTATAAAACAAAAGAAAGTA
Found at i:50849637 original size:48 final size:48
Alignment explanation
Indices: 50849546--50849890 Score: 363
Period size: 48 Copynumber: 7.2 Consensus size: 48
50849536 ACCAAATTTA
* * * * *
50849546 GGACATGGCATCGGC-ATTTGAGATAGGTGCCTGTGTAAGACCATGTCTA
1 GGACATGGCATCAGCGA--TGATATATGTGCCAGTGTAAGACCATGTCTG
* * * * * *
50849595 GAACATAGCATCTGCGATAATATGTATGCCAGTGTAAGACCATGTCTG
1 GGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
* * *
50849643 GGACATGGCAAT-GGTGATGATATGTGTGCCAGTGTAAGACCATGTCTG
1 GGACATGGC-ATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
* * * *
50849691 GGACATGGCATCAGTGATGATGTATGTGCCAATGTAAGACCATGACTG
1 GGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
* * * * *
50849739 GAACATGGCAT-ATGCAATGATGTATGTGCTAATGTAAGACCATGTCTG
1 GGACATGGCATCA-GCGATGATATATGTGCCAGTGTAAGACCATGTCTG
* * * *
50849787 GGACATGGCATCGGCAATGATGTATGTGCCAGTGTAAGACCATGTTTG
1 GGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
* * *
50849835 GCACATGGCATCAGTGATGATATATGTGCCAGTGTAAGACCATGTCTA
1 GGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
50849883 GGACATGG
1 GGACATGG
50849891 AATTGGTGAT
Statistics
Matches: 252, Mismatches: 39, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
47 3 0.01
48 234 0.93
49 14 0.06
50 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
GGACATGGCATCAGCGATGATATATGTGCCAGTGTAAGACCATGTCTG
Found at i:50849889 original size:144 final size:144
Alignment explanation
Indices: 50849572--50849890 Score: 426
Period size: 144 Copynumber: 2.2 Consensus size: 144
50849562 TTTGAGATAG
* * * * * * *
50849572 GTGCCTGTGTAAGACCATGTCTAGAACATAGCATCTGCGATAATATGTATGCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACCATGTCTAGGACATGGCATATGCAATAATATATATGCCAATGTAAGACCA
** * *
50849637 TGTCTGGGACATGGCAATGGTGATGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
66 TGTCTGGGACATGGCAATGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGCACATGGCAT
*
50849702 CAGTGATGATGTAT
131 CAGTGATGATATAT
* * * * * *
50849716 GTGCCAATGTAAGACCATGACT-GGAACATGGCATATGCAATGATGTATGTGCTAATGTAAGACC
1 GTGCCAGTGTAAGACCATGTCTAGG-ACATGGCATATGCAATAATATATATGCCAATGTAAGACC
* *
50849780 ATGTCTGGGACATGGC-ATCGGCAATGATGTATGTGCCAGTGTAAGACCATGTTTGGCACATGGC
65 ATGTCTGGGACATGGCAAT-GGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGCACATGGC
50849844 ATCAGTGATGATATAT
129 ATCAGTGATGATATAT
50849860 GTGCCAGTGTAAGACCATGTCTAGGACATGG
1 GTGCCAGTGTAAGACCATGTCTAGGACATGG
50849891 AATTGGTGAT
Statistics
Matches: 150, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
143 3 0.02
144 145 0.97
145 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (144 bp):
GTGCCAGTGTAAGACCATGTCTAGGACATGGCATATGCAATAATATATATGCCAATGTAAGACCA
TGTCTGGGACATGGCAATGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGGCACATGGCAT
CAGTGATGATATAT
Found at i:50849918 original size:144 final size:143
Alignment explanation
Indices: 50849627--50849931 Score: 404
Period size: 144 Copynumber: 2.1 Consensus size: 143
50849617 TGTATGCCAG
** *
50849627 TGTAAGACCATGTCTGGGACATGGCAATGGTGATGATATGTGTGCCAGTGTAAGACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCAATGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGG
* * *
50849692 GACATGGCATCAGTGATGATGTATGTGCCAATGTAAGACCATGACTGGAACATGGCATATGCAAT
66 CACATGGCATCAGTGATGATATATGTGCCAATGTAAGACCATGACTGGAACATGGAATATG-AAT
50849757 GATGTATGTGCTAA
130 GATGTATGTGCTAA
* *
50849771 TGTAAGACCATGTCTGGGACATGGC-ATCGGCAATGATGTATGTGCCAGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCAAT-GGCAATGATATATGTGCCAGTGTAAGACCATGTCTG
* * *
50849835 GCACATGGCATCAGTGATGATATATGTGCCAGTGTAAGACCATGTCTAGG-ACATGGAAT-TG-G
65 GCACATGGCATCAGTGATGATATATGTGCCAATGTAAGACCATGACT-GGAACATGGAATATGAA
* *
50849897 TGATGATATGTGGATTCA
129 TGATG-TATGT-G-CTAA
50849915 TGTAAGACCATGT-TGGG
1 TGTAAGACCATGTCTGGG
50849932 GATATAGCAT
Statistics
Matches: 143, Mismatches: 13, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
141 5 0.03
142 5 0.03
143 9 0.06
144 122 0.85
145 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (143 bp):
TGTAAGACCATGTCTGGGACATGGCAATGGCAATGATATATGTGCCAGTGTAAGACCATGTCTGG
CACATGGCATCAGTGATGATATATGTGCCAATGTAAGACCATGACTGGAACATGGAATATGAATG
ATGTATGTGCTAA
Found at i:50849919 original size:48 final size:47
Alignment explanation
Indices: 50849578--50849931 Score: 319
Period size: 48 Copynumber: 7.4 Consensus size: 47
50849568 ATAGGTGCCT
* * * * * * *
50849578 GTGTAAGACCATGTCTAGAACATAGCATCTGCGATAATATGTATGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGT-CCA
50849626 GTGTAAGACCATGTCTGGGACATGGCAAT-GGTGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGC-ATCGGTGATGATATGTGT-CCA
*
50849674 GTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATGTATGTG-CCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA--TATGTGTCCA
* * * ** *
50849722 ATGTAAGACCATGACTGGAACATGGCATATGCAATGATG-TATGTG-CTA
1 GTGTAAGACCATGTCTGGGACATGGC--AT-CGGTGATGATATGTGTCCA
*
50849770 ATGTAAGACCATGTCTGGGACATGGCATCGGCAATGATG-TATGTG-CCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGG---TGATGATATGTGTCCA
* * * *
50849818 GTGTAAGACCATGTTTGGCACATGGCATCAGTGATGATATATGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGT-CCA
* * * *
50849866 GTGTAAGACCATGTCTAGGACATGGAATTGGTGATGATATGTGGATTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGT-G-TCCA
50849915 -TGTAAGACCATGT-TGGG
1 GTGTAAGACCATGTCTGGG
50849932 GATATAGCAT
Statistics
Matches: 259, Mismatches: 32, Indels: 31
0.80 0.10 0.10
Matches are distributed among these distances:
45 6 0.02
46 7 0.03
47 5 0.02
48 220 0.85
49 5 0.02
50 9 0.03
51 7 0.03
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGTCCA
Found at i:50849928 original size:96 final size:92
Alignment explanation
Indices: 50849572--50849927 Score: 356
Period size: 96 Copynumber: 3.7 Consensus size: 92
50849562 TTTGAGATAG
* * * * * * *
50849572 GTGCCTGTGTAAGACCATGTCTAGAACATAGCATCTGCGATAATATGTATGCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATG--TGCCA-TGTAAGACCA
* * *
50849637 TGTCTGGGACATGGCAATGGTGATGATATGT
63 TGTCTGGAACATGGC-ATAGTGATGATATAT
*
50849668 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGTGATGATGTATGTGCCAATGTAAGACCA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGA--TATGTGCC-ATGTAAGACCA
* *
50849733 TGACTGGAACATGGCATA-TGCAATGATGTAT
63 TGTCTGGAACATGGCATAGTG--ATGATATAT
* *
50849764 GTGCTAATGTAAGACCATGTCTGGGACATGGCATCGGCAATGATG-TATGTGCCAGTGTAAGACC
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG---TGATGATATGTGCCA-TGTAAGACC
* *
50849828 ATGTTTGGCACATGGCATCAGTGATGATATAT
62 ATGTCTGGAACATGGCAT-AGTGATGATATAT
* * * *
50849860 GTGCCAGTGTAAGACCATGTCTAGGACATGGAATTGGTGATGATATGTGGATTCATGTAAGACCA
1 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGT-G--CCATGTAAGACCA
50849925 TGT
63 TGT
50849928 TGGGGATATA
Statistics
Matches: 220, Mismatches: 25, Indels: 30
0.80 0.09 0.11
Matches are distributed among these distances:
93 5 0.02
94 7 0.03
95 4 0.02
96 189 0.86
97 4 0.02
98 6 0.03
99 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (92 bp):
GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATGTGCCATGTAAGACCATGT
CTGGAACATGGCATAGTGATGATATAT
Found at i:50852631 original size:43 final size:42
Alignment explanation
Indices: 50852584--50852750 Score: 174
Period size: 43 Copynumber: 3.9 Consensus size: 42
50852574 GTTATCGAGA
*
50852584 TGTGATTACATGTAAGACCATGTCTGGGACATCGGTATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACAT-GGCATTGTAT
* * *
50852627 TGTGATTACGTGTAAGACCATGTTTGGGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTAT
* * * * **
50852670 TATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCGCTG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACA-TGGCATTGTAT
* * *
50852712 ATGTGATAACATGTAAGACCATATCTGGGATATGGCATT
1 -TGTGATTACATGTAAGACCATGTCTGGGACATGGCATT
50852751 ATTCACTCTT
Statistics
Matches: 101, Mismatches: 21, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
42 7 0.07
43 93 0.92
44 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (42 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATGGCATTGTAT
Found at i:50858600 original size:40 final size:40
Alignment explanation
Indices: 50858536--50858697 Score: 170
Period size: 40 Copynumber: 4.1 Consensus size: 40
50858526 CTAAGATTCG
* * * * *
50858536 AAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCA
1 AAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCA
* *
50858576 AAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACCCG
1 AAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCA
* * *
50858616 AAGGCATTTGTG-TGAGTTGCTATATCCGGGCTAAGACTCG
1 AAGGCATTTGTGCT-AGTTGTTATATCCGGGCTAAGACCCA
*
50858656 AAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA-ATCCCA
1 AAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGA-CCCA
50858695 AAG
1 AAG
50858698 ATACTTGGGT
Statistics
Matches: 103, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 14 0.14
40 86 0.83
41 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
AAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCA
Found at i:50858660 original size:80 final size:79
Alignment explanation
Indices: 50858534--50858688 Score: 213
Period size: 80 Copynumber: 1.9 Consensus size: 79
50858524 GACTAAGATT
* * *
50858534 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCAAAGGCATTTATGCTAG-TGATTA
1 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTTG-TTA
50858598 TATCCGGGCTAAGACC
65 TATCC-GGCTAAGACC
* * * * *
50858614 CGAAGGCATTTGTGTGAGTTGCTATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTAT
1 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTTGTTAT
50858679 ATCCGGCTAA
66 ATCCGGCTAA
50858689 ATCCCAAAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 6 0.09
80 58 0.88
81 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (79 bp):
CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAAGGCATTTATGCGAGTTGTTAT
ATCCGGCTAAGACC
Found at i:50858965 original size:22 final size:22
Alignment explanation
Indices: 50858925--50858966 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50858915 GAATGTGCAT
*
50858925 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
50858947 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
50858967 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:50864339 original size:26 final size:26
Alignment explanation
Indices: 50864303--50864358 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
50864293 TGCCGAGCAG
*
50864303 AAAGTAAAAATAATTCGTGAAAGTCT
1 AAAGCAAAAATAATTCGTGAAAGTCT
50864329 AAAGCAAAAATAATTCGTGAAAGTCT
1 AAAGCAAAAATAATTCGTGAAAGTCT
50864355 AAAG
1 AAAG
50864359 GCAGCATCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.52, C:0.09, G:0.16, T:0.23
Consensus pattern (26 bp):
AAAGCAAAAATAATTCGTGAAAGTCT
Found at i:50866633 original size:40 final size:40
Alignment explanation
Indices: 50866528--50866680 Score: 206
Period size: 39 Copynumber: 3.9 Consensus size: 40
50866518 GACTAAGATT
* * *
50866528 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCC
1 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
* * *
50866568 C-AAGGCATTTATGCTAG-TGATTATATCCGGGCTAAGACC
1 CGAAGGCATTTGTGCGAGTTG-CTATATCCGGGCTAAGACC
50866607 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGA-C
1 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
*
50866646 CGAAGGCATTTGTGCGAGTTGTTATATCC-GGCTAA
1 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAA
50866681 ATCCCAAAGA
Statistics
Matches: 100, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 8 0.08
39 59 0.59
40 31 0.31
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACC
Found at i:50866652 original size:79 final size:78
Alignment explanation
Indices: 50866528--50866680 Score: 227
Period size: 79 Copynumber: 1.9 Consensus size: 78
50866518 GACTAAGATT
* * *
50866528 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCAAGGCATTTATGCTAG-TGATTAT
1 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAGGCATTTATGCGAGTTG-TTAT
50866592 ATCCGGGCTAAGACC
65 ATCC-GGCTAAGACC
* * *
50866607 CGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGACCGAAGGCATTTGTGCGAGTTGTTATA
1 CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAGGCATTTATGCGAGTTGTTATA
50866672 TCCGGCTAA
66 TCCGGCTAA
50866681 ATCCCAAAGA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
78 6 0.09
79 59 0.88
80 2 0.03
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
CGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCAAGGCATTTATGCGAGTTGTTATA
TCCGGCTAAGACC
Found at i:50866956 original size:22 final size:22
Alignment explanation
Indices: 50866916--50866957 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
50866906 GAATGTGCAT
*
50866916 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
50866938 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
50866958 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:50874412 original size:46 final size:47
Alignment explanation
Indices: 50874260--50874472 Score: 160
Period size: 46 Copynumber: 4.6 Consensus size: 47
50874250 TGTGTGAGCT
* * * * *
50874260 AGTGTAAAACATGTTTGGGACATGCATTGGCCA-C-ATTATGAG-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GACGAGTAGCC
* * *
50874306 AGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGAGACGAGT-GCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGACGAGTAGCC
* *
50874354 AGTGTAAAACATGTCTGGGACATGCATCGGCCTCGAGAC-A-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGT-AGCC
* * *
50874400 AATGTAAGACATGTCTGGGACATGCATCGGC-TACGAGA--TGT-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGACGAGTAGCC
50874444 AGTGTAAGACCATGTCT-GGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
50874473 AGCACAGATA
Statistics
Matches: 140, Mismatches: 16, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
44 17 0.12
45 14 0.10
46 58 0.41
47 29 0.21
48 21 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGTAGCC
Found at i:50882067 original size:46 final size:46
Alignment explanation
Indices: 50881918--50882139 Score: 200
Period size: 46 Copynumber: 4.8 Consensus size: 46
50881908 TCACTTGTGT
* * ** *
50881918 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGA
* **
50881964 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGACGA
* * * **
50882012 GTGCTAGTGTAAGACATGTTTGGGACATGCATCAACCTCAAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACG-A
* * *
50882059 -AGCCAGTGTAAGACATATCTGGAACATGCATCGG-CTACAAGA--T
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGACGA
* *
50882102 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
50882140 ATAGATATGC
Statistics
Matches: 140, Mismatches: 28, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 64 0.46
47 28 0.20
48 23 0.16
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGA
Found at i:50885034 original size:40 final size:40
Alignment explanation
Indices: 50884985--50885140 Score: 118
Period size: 40 Copynumber: 3.9 Consensus size: 40
50884975 CGGAATTTAA
* * * *
50884985 CCGGATATAGCGACTCGCTCGATTGTCTTCGAGACA-TAGC
1 CCGGTTATAGCGACTCGCACAATTGCCTTCGAGA-ATTAGC
* * *
50885025 CCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATTAGC
1 CCGGTTATAGCGACTCGCACAATTGCCTTCGAGAATTAGC
** * * * *
50885065 CCGGTT-TAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGCGACTCGCACAATTGCCTTCGAGAATTAGC
* * ** * *
50885104 CCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATT
1 CCGGTTATAGCGACTCGCACAATTGCCTTCGAGAATT
50885141 GACCCGGATT
Statistics
Matches: 100, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 35 0.35
40 65 0.65
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CCGGTTATAGCGACTCGCACAATTGCCTTCGAGAATTAGC
Found at i:50885107 original size:79 final size:81
Alignment explanation
Indices: 50885024--50885188 Score: 219
Period size: 79 Copynumber: 2.1 Consensus size: 81
50885014 CGAGACATAG
* * * *
50885024 CCCGGTTATAGTGATTCGCACAATTGCCTTCGGGAATT-AGCCCGG-TTTAGTAAC-TCGCACAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGA-CCCGGATTTAGTAACTTAGCACAA
*
50885086 ATGCCTTCGGGACTTAA
65 AAGCCTTCGGGACTTAA
* * *
50885103 CCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTCACTTAGCACAAA
1 CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAA
*
50885168 AGCCTTCGGGACTTAG
66 AGCCTTCGGGACTTAA
50885184 CCCGG
1 CCCGG
50885189 ATACCATTCG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 38 0.51
80 9 0.12
81 27 0.36
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.26
Consensus pattern (81 bp):
CCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCGGATTTAGTAACTTAGCACAAA
AGCCTTCGGGACTTAA
Found at i:50885189 original size:41 final size:40
Alignment explanation
Indices: 50885021--50885190 Score: 193
Period size: 40 Copynumber: 4.2 Consensus size: 40
50885011 CTTCGAGACA
* * *
50885021 TAGCCCGG-TTATAGTGATTCGCACAATTGCCTTCGGGAAT
1 TAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGAAT
*
50885061 TAGCCCGG-TTTAGTAACTCGCACAAATGCCTTCGGGACT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * *
50885100 TAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAAT
1 TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
* * * *
50885140 T-GACCCGGATTTAGTCACTTAGCACAAAAGCCTTCGGGACT
1 TAG-CCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGAAT
50885181 TAGCCCGGAT
1 TAGCCCGGAT
50885191 ACCATTCGAA
Statistics
Matches: 112, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.29
40 52 0.46
41 27 0.24
42 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
TAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGAAT
Found at i:50887870 original size:18 final size:20
Alignment explanation
Indices: 50887849--50887886 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
50887839 TAATGCCTTA
50887849 TATGTTGGCT-TA-TTTTGG
1 TATGTTGGCTATAGTTTTGG
*
50887867 TATGTTTGCTATAGTTTTGG
1 TATGTTGGCTATAGTTTTGG
50887887 ATATAGCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 2 0.12
20 6 0.35
ACGTcount: A:0.13, C:0.05, G:0.26, T:0.55
Consensus pattern (20 bp):
TATGTTGGCTATAGTTTTGG
Found at i:50893653 original size:48 final size:48
Alignment explanation
Indices: 50893578--50893674 Score: 113
Period size: 48 Copynumber: 2.0 Consensus size: 48
50893568 CTAATCGTTA
* * *
50893578 ACTGTTACTGAGTAATAAAGATCAATTGATCGCTACTAAAAAATATTG
1 ACTGTTACTGAATAATAAAGATAAATTGATCGATACTAAAAAATATTG
* ** * * *
50893626 ACTGTTACTGAATGATATTGATAAATTGATTGATATTGAAAAATATTG
1 ACTGTTACTGAATAATAAAGATAAATTGATCGATACTAAAAAATATTG
50893674 A
1 A
50893675 TTGATATTGA
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.35
Consensus pattern (48 bp):
ACTGTTACTGAATAATAAAGATAAATTGATCGATACTAAAAAATATTG
Found at i:50893675 original size:20 final size:19
Alignment explanation
Indices: 50893638--50893684 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 19
50893628 TGTTACTGAA
*
50893638 TGATATTG-ATAAATTGAT
1 TGATATTGAAAAAATTGAT
50893656 TGATATTGAAAAATATTGAT
1 TGATATTGAAAAA-ATTGAT
50893676 TGATATTGA
1 TGATATTGA
50893685 GCTTGGAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 8 0.31
19 3 0.12
20 15 0.58
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (19 bp):
TGATATTGAAAAAATTGAT
Found at i:50895373 original size:18 final size:19
Alignment explanation
Indices: 50895350--50895385 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
50895340 AAAAGAATAC
*
50895350 AAAGATTAAGAAA-GAAAG
1 AAAGATAAAGAAATGAAAG
50895368 AAAGATAAAGAAATGAAA
1 AAAGATAAAGAAATGAAA
50895386 AGAAGATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.11
Consensus pattern (19 bp):
AAAGATAAAGAAATGAAAG
Found at i:50897188 original size:16 final size:16
Alignment explanation
Indices: 50897154--50897187 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
50897144 ATTCATGTTA
50897154 TTTATTTTATAATTTT
1 TTTATTTTATAATTTT
*
50897170 TTTATTTT-TTATTTT
1 TTTATTTTATAATTTT
50897185 TTT
1 TTT
50897188 TCATGAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTATTTTATAATTTT
Found at i:50901192 original size:12 final size:12
Alignment explanation
Indices: 50901177--50901216 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
50901167 TATTAAGAAT
50901177 TTTATTAAATTA
1 TTTATTAAATTA
50901189 TTTATT--ATT-
1 TTTATTAAATTA
50901198 TTTATTAAATTA
1 TTTATTAAATTA
50901210 TTT-TTAA
1 TTTATTAA
50901217 TAATAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
9 6 0.24
10 3 0.12
11 7 0.28
12 9 0.36
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTTATTAAATTA
Found at i:50901223 original size:17 final size:14
Alignment explanation
Indices: 50901192--50901233 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
50901182 TAAATTATTT
50901192 ATTATTTTTATTAA
1 ATTATTTTTATTAA
*
50901206 ATTATTTTTAAT-A
1 ATTATTTTTATTAA
* *
50901219 ATAAATTTTATTAA
1 ATTATTTTTATTAA
50901233 A
1 A
50901234 ATTTAATAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTATTTTTATTAA
Found at i:50901416 original size:16 final size:16
Alignment explanation
Indices: 50901395--50901442 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
50901385 GTTAAATTAC
*
50901395 TTATTACAACTGTATT
1 TTATTACAACTCTATT
50901411 TTATTACAACTCTATT
1 TTATTACAACTCTATT
** *
50901427 CAATTACAACCCTATT
1 TTATTACAACTCTATT
50901443 CCGTTATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.02, T:0.44
Consensus pattern (16 bp):
TTATTACAACTCTATT
Found at i:50907138 original size:19 final size:18
Alignment explanation
Indices: 50907091--50907145 Score: 55
Period size: 19 Copynumber: 3.2 Consensus size: 18
50907081 TTAATTTTTT
*
50907091 TTAAATTTT-AAAAAATA
1 TTAAGTTTTAAAAAAATA
50907108 TT---TTTTAAAAAAATTA
1 TTAAGTTTTAAAAAAA-TA
*
50907124 TTAAGTTTTATAAAAATA
1 TTAAGTTTTAAAAAAATA
50907142 TTAA
1 TTAA
50907146 ATAAAGTTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
14 4 0.12
15 6 0.19
16 4 0.12
17 2 0.06
18 6 0.19
19 10 0.31
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TTAAGTTTTAAAAAAATA
Found at i:50908221 original size:38 final size:37
Alignment explanation
Indices: 50908174--50908325 Score: 171
Period size: 38 Copynumber: 4.0 Consensus size: 37
50908164 CGGCATCGTG
* *
50908174 GAATGGTTATCTACTAGCTCTACAGAGTGAA-ACCATGA
1 GAATGGTTATCTACTGGCTCTAC-GAG-CAACACCATGA
* *
50908212 GAATAGTTATCTATTGGCTCTACGAAGCAACACCATGA
1 GAATGGTTATCTACTGGCTCTACG-AGCAACACCATGA
*
50908250 GAATGGTTAACTACTGGCTCTACGGAGCAACACCATGA
1 GAATGGTTATCTACTGGCTCTAC-GAGCAACACCATGA
* * * *
50908288 GAATGATTATCTATTGCCTCTACGAAGCGACACCATGA
1 GAATGGTTATCTACTGGCTCTACG-AGCAACACCATGA
50908326 AAATAGTTTA
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
37 4 0.04
38 93 0.95
39 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (37 bp):
GAATGGTTATCTACTGGCTCTACGAGCAACACCATGA
Found at i:50908300 original size:76 final size:76
Alignment explanation
Indices: 50908174--50908325 Score: 218
Period size: 76 Copynumber: 2.0 Consensus size: 76
50908164 CGGCATCGTG
* * *
50908174 GAATGGTTATCTACTAGCTCTACAGAGTGAAACCATGAGAATAGTTATCTATTGGCTCTACGAAG
1 GAATGGTTAACTACTAGCTCTACAGAGTCAAACCATGAGAATAGTTATCTATTGCCTCTACGAAG
50908239 CAACACCATGA
66 CAACACCATGA
* *
50908250 GAATGGTTAACTACTGGCTCTACGGAG-CAACACCATGAGAAT-GATTATCTATTGCCTCTACGA
1 GAATGGTTAACTACTAGCTCTACAGAGTCAA-ACCATGAGAATAG-TTATCTATTGCCTCTACGA
*
50908313 AGCGACACCATGA
64 AGCAACACCATGA
50908326 AAATAGTTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
75 3 0.04
76 65 0.96
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (76 bp):
GAATGGTTAACTACTAGCTCTACAGAGTCAAACCATGAGAATAGTTATCTATTGCCTCTACGAAG
CAACACCATGA
Found at i:50913266 original size:40 final size:39
Alignment explanation
Indices: 50913217--50913352 Score: 143
Period size: 40 Copynumber: 3.4 Consensus size: 39
50913207 GACTTGCTCG
* *
50913217 ATTGTCTTCGGGACATT-GCCCGGTTATAGTGA-TCCGCACA
1 ATTGCCTTCGGGA-ATTAGCCCGGTT-TAGTAACT-CGCACA
50913257 ATTGCCTTCGGGAATTAGCCCGGATTTAGTAACTCGCACGA
1 ATTGCCTTCGGGAATTAGCCCGG-TTTAGTAACTCGCAC-A
* * *
50913298 A-TGCCTTCGGGACTTAACCCGGTTTTGGTAACTCGCACA
1 ATTGCCTTCGGGAATTAGCCCGG-TTTAGTAACTCGCACA
*
50913337 AATGCCTTCGGGAATT
1 ATTGCCTTCGGGAATT
50913353 GACCCAGATT
Statistics
Matches: 84, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
39 5 0.06
40 74 0.88
41 5 0.06
ACGTcount: A:0.22, C:0.25, G:0.24, T:0.29
Consensus pattern (39 bp):
ATTGCCTTCGGGAATTAGCCCGGTTTAGTAACTCGCACA
Found at i:50913320 original size:80 final size:81
Alignment explanation
Indices: 50913222--50913400 Score: 204
Period size: 80 Copynumber: 2.2 Consensus size: 81
50913212 GCTCGATTGT
* * *
50913222 CTTCGGGACATT-GCCCGGTTATAGTGA-TCCGCACAATTGCCTTCGGGAATT-AGCCCGGATTT
1 CTTCGGGAC-TTAGCCCGGTTATAGTAACT-CGCACAAATGCCTTCGGGAATTGA-CCCAGATTT
* * *
50913284 AGTAAC-TCGCACGAATGC
63 AGTAACTTAGCACAAAAGC
* * *
50913302 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGT
1 CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGT
*
50913367 CACTTAGCACAAAAGC
66 AACTTAGCACAAAAGC
*
50913383 CTTTGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
50913401 ATACCATTCG
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 2 0.02
80 54 0.65
81 27 0.33
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAATTGACCCAGATTTAGT
AACTTAGCACAAAAGC
Found at i:50917524 original size:49 final size:49
Alignment explanation
Indices: 50917452--50917633 Score: 247
Period size: 49 Copynumber: 3.7 Consensus size: 49
50917442 TCTATTGTGA
* *
50917452 GGTCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * * * *
50917501 GGTCACATGTGTAATACTAAGTGCATGCTACTATGCGTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* *
50917551 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *
50917601 AGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
50917634 TGCGTACCAG
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 69 0.61
50 4 0.04
51 40 0.35
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:50917631 original size:100 final size:100
Alignment explanation
Indices: 50917454--50917646 Score: 332
Period size: 100 Copynumber: 1.9 Consensus size: 100
50917444 TATTGTGAGG
*
50917454 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACATGTGTAATACT
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCACATGTGTAATACT
* *
50917519 AAGTGCATGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
* * *
50917554 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCGCATGTGTAGTACT
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCACATGTGTAATACT
50917619 AAGTGCAGGCTACTATGCGTACCAGATA
66 AAGTGCAGGCTACTATGCGTACCAGATA
50917647 GCTTTGGCTA
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 87 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.28
Consensus pattern (100 bp):
TCACGTGTATAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTAGTCACATGTGTAATACT
AAGTGCAGGCTACTATGCGTACCAGATAACTTCGA
Found at i:50921165 original size:68 final size:67
Alignment explanation
Indices: 50920985--50921166 Score: 195
Period size: 68 Copynumber: 2.7 Consensus size: 67
50920975 GGAAATTATG
* * * * * *
50920985 ACACCATATTGTGTAAGACCATAGCTGGGTTAAGGCAACATATGAAGTTCACTAAGACAGTAAAC
1 ACACCATATTGTGTAAGACCATAG-TAGGCTATGGCAACATATGAAATTCACCAAGAAAGTAAAC
*
50921050 ATG
65 ATA
* * * *
50921053 ACACCATATTGTGTAAGACTATAGCAGAGCTATGACAACCTATGAAA-TCTACCAAGAAAGTAAA
1 ACACCATATTGTGTAAGACCATAGTAG-GCTATGGCAACATATGAAATTC-ACCAAGAAAGTAAA
50921117 CATA
64 CATA
* * *
50921121 ACATCATATAGTGTAAGACCATAGTTAGGCTCTGGCAACATATGAA
1 ACACCATATTGTGTAAGACCATAG-TAGGCTATGGCAACATATGAA
50921167 GTCCGCCAGG
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
67 3 0.03
68 88 0.95
69 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (67 bp):
ACACCATATTGTGTAAGACCATAGTAGGCTATGGCAACATATGAAATTCACCAAGAAAGTAAACA
TA
Found at i:50923347 original size:5 final size:5
Alignment explanation
Indices: 50923339--50923363 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
50923329 AAAATAAAAA
50923339 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
50923364 GGTTGGCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:50924036 original size:13 final size:15
Alignment explanation
Indices: 50924006--50924037 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
50923996 GGAATTTTTG
50924006 AAATGTATGTACTAT
1 AAATGTATGTACTAT
50924021 AAATGTA-GTA-TAT
1 AAATGTATGTACTAT
50924034 AAAT
1 AAAT
50924038 TTCAGCTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 3 0.18
15 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (15 bp):
AAATGTATGTACTAT
Found at i:50927897 original size:17 final size:18
Alignment explanation
Indices: 50927867--50927902 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
50927857 TTTAAAAATT
*
50927867 TTAAAATGTATTTTTTTA
1 TTAAAATGTATTTTCTTA
50927885 TTAAAAT-TATTTTCTTA
1 TTAAAATGTATTTTCTTA
50927902 T
1 T
50927903 ATCATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (18 bp):
TTAAAATGTATTTTCTTA
Found at i:50933644 original size:9 final size:9
Alignment explanation
Indices: 50933627--50933725 Score: 53
Period size: 9 Copynumber: 10.7 Consensus size: 9
50933617 AATATGGTAA
50933627 AATAAATAT
1 AATAAATAT
*
50933636 AATATATAT
1 AATAAATAT
* *
50933645 AGTAAAAAT
1 AATAAATAT
*
50933654 GTATAACATAT
1 -AATAA-ATAT
50933665 AATAAA-AT
1 AATAAATAT
*
50933673 -ATAAACAT
1 AATAAATAT
50933681 AATAGAATA-
1 AATA-AATAT
50933690 AATAATATAT
1 AATAA-ATAT
*
50933700 ATATTAAAAAT
1 A-A-TAAATAT
50933711 -ATAACATAT
1 AATAA-ATAT
50933720 AATAAA
1 AATAAA
50933726 ATTTATAAAG
Statistics
Matches: 68, Mismatches: 11, Indels: 22
0.67 0.11 0.22
Matches are distributed among these distances:
7 5 0.07
8 8 0.12
9 30 0.44
10 15 0.22
11 7 0.10
12 3 0.04
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (9 bp):
AATAAATAT
Found at i:50935390 original size:44 final size:44
Alignment explanation
Indices: 50935325--50936083 Score: 717
Period size: 44 Copynumber: 17.2 Consensus size: 44
50935315 AAACTCAGGA
* * * * * *
50935325 ACGCCAAATCTGTTATTTTCGATCTACTCTTTAACAATATAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * * *
50935369 ATGCCAAATCTGCTATATTCGATTTGCTTTTTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
50935413 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
50935457 ACGCCAAGTTTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
** * *
50935501 ATACCAAATCTACTATCTTCGATCTGCTCTCTGAAAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * **
50935545 ACGCCAAATCTGCTATCATCGATCTACTCTCTGACAATGTAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
50935589 ACGCCAGATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
50935633 ACGCCAAATCTGCTATCGTCGATCTGCTCTCTGACAATATAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * *
50935677 ACGCCAAATCTGATATCTTCGATATGCTCTTTGACCATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *** ** *
50935721 ACGTCAAATCCATTATCTTCGATCTATTCTCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
50935765 ACGCCAAATCTGCTATCTTTGATCTGCTC-CTTGTA-AACACA-AGG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTC-TG-ACAATACAGA-G
* * * * * * *
50935809 ATGCCAAA--T-C-ATCTTGGATCTACTTCGATGTGAAAACATCCGA-
1 ACGCCAAATCTGCTATCTTCGATCTGC-TC--TCTGACAATA-CAGAG
* ** * * * * * * **
50935852 AGGTTAGATTTGCTATGTCTTCAATCTACTCTCCGTCGAATATGGAG
1 ACGCCAAATCTGCTA--TCTTCGATCTGCTCTCTGAC-AATACAGAG
* * * *
50935899 ACGCTAAATCTG-TTTCTTCGATTTGTTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * *
50935942 ATGCCAAATCTGATATCTTCTATCTACTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
** *
50935986 ATACCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
** *
50936030 ACGCCAAATCTAATATCTTCGATCTGTTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
50936074 ATGCCCAATC
1 ACGCCAAATC
50936084 ATCTTGGATC
Statistics
Matches: 583, Mismatches: 113, Indels: 38
0.79 0.15 0.05
Matches are distributed among these distances:
40 11 0.02
41 3 0.01
42 2 0.00
43 29 0.05
44 505 0.87
45 3 0.01
46 6 0.01
47 12 0.02
48 2 0.00
49 10 0.02
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (44 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:50946452 original size:40 final size:40
Alignment explanation
Indices: 50946407--50946574 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
50946397 CGGAATATAA
50946407 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
50946447 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
50946487 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
50946527 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
50946567 CCGGATAT
1 CCGGATAT
50946575 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:50950655 original size:15 final size:15
Alignment explanation
Indices: 50950635--50950703 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
50950625 GTATCTTGGG
50950635 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
50950650 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
50950665 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
50950680 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
50950695 TTTCTTTAT
1 TTTCTTTAT
50950704 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:50950704 original size:30 final size:30
Alignment explanation
Indices: 50950626--50950713 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
50950616 CATAGTATCG
* * * *
50950626 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
50950656 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
50950686 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
50950714 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:50953259 original size:46 final size:46
Alignment explanation
Indices: 50953096--50953268 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
50953086 ATTTGGGCAT
*
50953096 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-A-GT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
50953140 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
50953185 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
*
50953233 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
50953269 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
41 5 0.05
43 2 0.02
44 28 0.25
45 1 0.01
46 35 0.32
47 28 0.25
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:50961987 original size:29 final size:29
Alignment explanation
Indices: 50961953--50962141 Score: 89
Period size: 29 Copynumber: 6.6 Consensus size: 29
50961943 TACTCGATTT
* * *
50961953 CGCACACTTAGTGCCATGCGATTTAAGCC
1 CGCACACTTAGTGCCATACCATTCAAGCC
** * * *
50961982 CGCACACACAGTGCCATACCCTTCGAGCT
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * *
50962011 CGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * ** * *
50962040 TGCACACTCAGTGCCATA-TTTTCCAGCA
1 CGCACACTTAGTGCCATACCATTCAAGCC
* * * *
50962068 TGCACACTTAGTGCCATA-TATTTCCAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
* * * *
50962097 TGCACACTTAGTGCCATA-TATTTCTAGCA
1 CGCACACTTAGTGCCATACCA-TTCAAGCC
*
50962126 TGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
50962142 ATCTCGTCAC
Statistics
Matches: 138, Mismatches: 20, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.19
29 112 0.81
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATACCATTCAAGCC
Found at i:50962073 original size:86 final size:86
Alignment explanation
Indices: 50961983--50962141 Score: 230
Period size: 86 Copynumber: 1.8 Consensus size: 86
50961973 ATTTAAGCCC
* *
50961983 GCACACACAGTGCCATACCCTTCGAGC-TCGCACACTTAGTGCCATATATTTCCAGCATGCACAC
1 GCACACACAGTGCCATACACTTCCAGCAT-GCACACTTAGTGCCATATATTTCCAGCATGCACAC
50962047 TCAGTGCCATATTTTCCAGCAT
65 TCAGTGCCATATTTTCCAGCAT
** * * *
50962069 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCTAGCATGCACACT
1 GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
*
50962134 TAGTGCCA
66 CAGTGCCA
50962142 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 63 0.98
87 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (86 bp):
GCACACACAGTGCCATACACTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCATGCACACT
CAGTGCCATATTTTCCAGCAT
Found at i:50962085 original size:57 final size:58
Alignment explanation
Indices: 50962012--50962141 Score: 235
Period size: 57 Copynumber: 2.3 Consensus size: 58
50962002 CTTCGAGCTC
50962012 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATAT-TTTCCAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
* *
50962069 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCTAGCAT
1 GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
50962127 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
50962142 ATCTCGTCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
57 46 0.66
58 24 0.34
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (58 bp):
GCACACTTAGTGCCATATATTTCCAGCATGCACACTCAGTGCCATATATTTCCAGCAT
Found at i:50964932 original size:40 final size:39
Alignment explanation
Indices: 50964822--50964965 Score: 171
Period size: 39 Copynumber: 3.6 Consensus size: 39
50964812 GTGCGGATTG
* *
50964822 TGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* *
50964861 TGAAATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
50964900 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
50964940 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
50964966 GTTTGAACGA
Statistics
Matches: 90, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 49 0.54
40 41 0.46
ACGTcount: A:0.24, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:50974575 original size:18 final size:18
Alignment explanation
Indices: 50974554--50974597 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
50974544 CAATGAAAAT
50974554 AATAATAATAATTCAAGA
1 AATAATAATAATTCAAGA
*
50974572 AATAATAATAATTCAAGT
1 AATAATAATAATTCAAGA
50974590 AATAATAA
1 AATAATAA
50974598 CATAATGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (18 bp):
AATAATAATAATTCAAGA
Found at i:50977152 original size:40 final size:40
Alignment explanation
Indices: 50977085--50977229 Score: 130
Period size: 40 Copynumber: 3.6 Consensus size: 40
50977075 AAATTGAATG
* * * *
50977085 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * * ***
50977125 ATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
* * ** *
50977165 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTAGAAACT
*
50977205 CTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCA
50977230 TTTGTGCACG
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 3 0.03
40 83 0.97
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTAGAAACT
Found at i:50977230 original size:40 final size:39
Alignment explanation
Indices: 50977124--50977252 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 39
50977114 TGCTGGAAAT
* * * *
50977124 TATATCCGGGTTAAGACCCAAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCGAGTGAC
* *
50977164 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCGAGTGAC
* *
50977204 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCGA-GTGAC
50977244 TATATCCGG
1 TATATCCGG
50977253 TTATATTCCG
Statistics
Matches: 77, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
39 4 0.05
40 71 0.92
41 2 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCGAGTGAC
Found at i:50979489 original size:12 final size:13
Alignment explanation
Indices: 50979470--50979502 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50979460 GGGTTTGGAT
50979470 ATGGAGAAGGAAG
1 ATGGAGAAGGAAG
*
50979483 A-GGAGAAGGTAG
1 ATGGAGAAGGAAG
50979495 ATGGAGAA
1 ATGGAGAA
50979503 AAAGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.09
Consensus pattern (13 bp):
ATGGAGAAGGAAG
Found at i:50991126 original size:49 final size:51
Alignment explanation
Indices: 50990999--50991131 Score: 144
Period size: 51 Copynumber: 2.6 Consensus size: 51
50990989 TCTATTGTGA
* * ** *
50990999 GGTCGCATATGTAGTACTAAGTGCAGACTACTATGTGTACCCGATAACTTC
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGCACCCGATAACTTC
* * * * * *
50991050 GATCACGTGAGTAGTACTAAGTTCAGGCTACTACATGCACCGGATAA-TT-
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGCACCCGATAACTTC
*
50991099 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
50991132 TGCGTACCAG
Statistics
Matches: 65, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
49 27 0.42
50 2 0.03
51 36 0.55
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (51 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTACATGCACCCGATAACTTC
Found at i:50997258 original size:18 final size:17
Alignment explanation
Indices: 50997206--50997262 Score: 80
Period size: 17 Copynumber: 3.3 Consensus size: 17
50997196 AGGCCAAATT
*
50997206 TGGGCTTGTGGGCCATA
1 TGGGCTTGTGGGCCACA
50997223 TGGGCTTGTGGGCCACA
1 TGGGCTTGTGGGCCACA
50997240 TGGG-TGTGTGGGACCACA
1 TGGGCT-TGTGGG-CCACA
50997258 TGGGC
1 TGGGC
50997263 CCGCATTATG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
16 1 0.03
17 26 0.72
18 9 0.25
ACGTcount: A:0.12, C:0.19, G:0.44, T:0.25
Consensus pattern (17 bp):
TGGGCTTGTGGGCCACA
Found at i:50999859 original size:26 final size:26
Alignment explanation
Indices: 50999828--50999877 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
50999818 AGTTTTGGTG
50999828 AGTTTAGCCACTCTATTTTTGGGTAA
1 AGTTTAGCCACTCTATTTTTGGGTAA
50999854 AGTTTAGCCACTCTATTTTTGGGT
1 AGTTTAGCCACTCTATTTTTGGGT
50999878 GCTGTAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (26 bp):
AGTTTAGCCACTCTATTTTTGGGTAA
Found at i:51001312 original size:26 final size:26
Alignment explanation
Indices: 51001255--51001328 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 26
51001245 CCAAAATTGA
* *
51001255 TAAATGACTATTTTTCCCTTATGTGG
1 TAAATGACTATTTTGCCCTTCTGTGG
51001281 TAAAATGACTATTTTGCCCTTCTAG-GG
1 T-AAATGACTATTTTGCCCTTCT-GTGG
* *
51001308 TAAATGACTGTTTGGCCCTTC
1 TAAATGACTATTTTGCCCTTC
51001329 AATGACTGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 19 0.45
27 22 0.52
28 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.41
Consensus pattern (26 bp):
TAAATGACTATTTTGCCCTTCTGTGG
Found at i:51004056 original size:40 final size:39
Alignment explanation
Indices: 51003946--51004089 Score: 180
Period size: 39 Copynumber: 3.6 Consensus size: 39
51003936 GTGCGGATTG
* *
51003946 TGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
51003985 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * *
51004024 TGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
51004064 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
51004090 GTTTGAACGA
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 51 0.55
40 41 0.45
ACGTcount: A:0.23, C:0.23, G:0.32, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:51004074 original size:79 final size:79
Alignment explanation
Indices: 51003935--51004089 Score: 197
Period size: 79 Copynumber: 2.0 Consensus size: 79
51003925 TGTGTATGAA
** *
51003935 TGTGCGGATTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTATGATATCCGGGCTAA
1 TGTGCGGATTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTACCATAACCGGGCTAA
51004000 G-CCCGAAGGCAAT
66 GTCCCGAAGGCAAT
* * * * *
51004013 TGTGC-GAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAACCGGGCT
1 TGTGCGGA-TTGTGATATCCGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTACCATAACCGGGCT
*
51004077 ATGTCCCGAAGGC
64 AAGTCCCGAAGGC
51004090 GTTTGAACGA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
77 2 0.03
78 23 0.35
79 31 0.48
80 9 0.14
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (79 bp):
TGTGCGGATTGTGATATCCGGGCTAAGCCCGAAGGCAATGGTGCGAGCTACCATAACCGGGCTAA
GTCCCGAAGGCAAT
Found at i:51008759 original size:40 final size:40
Alignment explanation
Indices: 51008695--51008902 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 40
51008685 TCTTCGGAAT
* **
51008695 TTAG-CCGGATATAACCACAAGCAC-AATTGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAA-TGCCTTCGGGTC
* * * *** * *
51008734 TTAACTCGGATTTGGTAACTTGCACAAATGGCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
*
51008774 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCTGGTC
1 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
*
51008814 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
* ** *
51008854 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTTGCACGAATGCCTTCGGGTC
51008894 TTAGCCCGG
1 TTAGCCCGG
51008903 GTATCATTCA
Statistics
Matches: 141, Mismatches: 25, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 3 0.02
40 135 0.96
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTTGCACGAATGCCTTCGGGTC
Found at i:51014455 original size:43 final size:43
Alignment explanation
Indices: 51014407--51014565 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
51014397 GATTAATGAG
* *
51014407 ATGTGATTATCTGTAAGACCATGTCTGGGACATTGTCATTATT
1 ATGTGATTATCTGTAAGACCATGTCTGGGACATTGACATCATT
* *
51014450 ATGTGATTA-CGTGTAAAACCATGTCTGGGACATTGACATCGTT
1 ATGTGATTATC-TGTAAGACCATGTCTGGGACATTGACATCATT
* * * * * * *
51014493 ATTTGATTTTGTGTAAGACCATAAT-TGGG-CTATCGGCATCAAT
1 ATGTGATTATCTGTAAGACCAT-GTCTGGGAC-ATTGACATCATT
* *
51014536 ATGTGA-TAACATGTAAGACCATATCTGGGA
1 ATGTGATTATC-TGTAAGACCATGTCTGGGA
51014566 TATGGCATTG
Statistics
Matches: 92, Mismatches: 17, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
42 5 0.05
43 86 0.93
44 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (43 bp):
ATGTGATTATCTGTAAGACCATGTCTGGGACATTGACATCATT
Found at i:51016362 original size:17 final size:18
Alignment explanation
Indices: 51016335--51016369 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51016325 TGAAAATGGG
51016335 TAAATAATATTTCAAAAA
1 TAAATAATATTTCAAAAA
*
51016353 TAAA-AATATTTTAAAAA
1 TAAATAATATTTCAAAAA
51016370 AATAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (18 bp):
TAAATAATATTTCAAAAA
Found at i:51017807 original size:13 final size:13
Alignment explanation
Indices: 51017789--51017813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51017779 GAATTAATAT
51017789 GTGTGAAAATTTC
1 GTGTGAAAATTTC
51017802 GTGTGAAAATTT
1 GTGTGAAAATTT
51017814 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:51019020 original size:42 final size:43
Alignment explanation
Indices: 51018948--51019040 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 43
51018938 TGAGATTTAA
*
51018948 GTGTAAGACCATGTCTGGGACATCGACATCG-TATATGATTTC
1 GTGTAAGACCATGTCTGGGACATCGACATCGATATATGATTAC
* * *
51018990 GTGTAAGACCCTGTCTGGGACAGT-GGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCTGGGACA-TCGACATCGATATATGATTAC
*
51019033 ATGTAAGA
1 GTGTAAGA
51019041 AAACGTCTAG
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
42 27 0.61
43 17 0.39
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACATCGACATCGATATATGATTAC
Found at i:51021863 original size:40 final size:39
Alignment explanation
Indices: 51021803--51021883 Score: 108
Period size: 40 Copynumber: 2.1 Consensus size: 39
51021793 ATATATAGGG
** *
51021803 GAAGCTATCTCAAATTGCACACCAAGTGCCACTTTTAGCC
1 GAAGCTATCTCAAACCGCACACCAAGTGCCA-TTTCAGCC
* *
51021843 GAAGCTATTTCAAACCGCACACTAAGTGCCATTTCAGCC
1 GAAGCTATCTCAAACCGCACACCAAGTGCCATTTCAGCC
51021882 GA
1 GA
51021884 TAAGTCGTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 9 0.25
40 27 0.75
ACGTcount: A:0.31, C:0.30, G:0.16, T:0.23
Consensus pattern (39 bp):
GAAGCTATCTCAAACCGCACACCAAGTGCCATTTCAGCC
Found at i:51022979 original size:27 final size:27
Alignment explanation
Indices: 51022941--51023033 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
51022931 CCTTAGCGAC
*
51022941 ATTTAGGTAATTTTATAAGTCAAGGGT
1 ATTTAGGTAATTTTACAAGTCAAGGGT
* * * *
51022968 ATTTCGGTAATTGTACAGGTCGAGGGT
1 ATTTAGGTAATTTTACAAGTCAAGGGT
* * * * * *
51022995 ATTTTGATAATTTCACAAATTAGGGGT
1 ATTTAGGTAATTTTACAAGTCAAGGGT
*
51023022 ATTTTGGTAATT
1 ATTTAGGTAATT
51023034 CCATTTTATT
Statistics
Matches: 51, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (27 bp):
ATTTAGGTAATTTTACAAGTCAAGGGT
Found at i:51023394 original size:29 final size:28
Alignment explanation
Indices: 51023331--51023399 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
51023321 TACATACATG
* *
51023331 CATATGGCCCACTAGGCCCAATCTCAGT
1 CATATGGCCCATTAGGCCCAATCACAGT
*
51023359 CATATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCC-AATCACAGT
*
51023388 CCTATGGCCCAT
1 CATATGGCCCAT
51023400 GTGGCCTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 18 0.50
29 18 0.50
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (28 bp):
CATATGGCCCATTAGGCCCAATCACAGT
Found at i:51026851 original size:39 final size:40
Alignment explanation
Indices: 51026713--51026930 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
51026703 ATTCGGATTG
51026713 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51026753 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51026793 ATAACCGGGCTAAGT-CCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
51026831 ATAACCGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51026870 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
51026910 ATATCC-GGCTAA-ACCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
51026931 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
38 37 0.22
39 65 0.38
40 68 0.40
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51034814 original size:40 final size:40
Alignment explanation
Indices: 51034750--51034970 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
51034740 ATTCGGATTG
*
51034750 ATAATCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51034789 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51034829 ATAACCGGGCCAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
51034869 ATAACCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
51034909 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
51034949 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
51034971 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 28 0.17
40 137 0.83
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.23
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:51043431 original size:40 final size:40
Alignment explanation
Indices: 51043382--51043489 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 40
51043372 TATCACGATT
** *
51043382 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * * *
51043422 GCACGAATGCCTTCGGGTCTTAGCCCAGATATAGCCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
51043462 GCACCATTGCCTTCGGGTCTTAACCCGG
1 GCACAAATGCCTTCGGGTCTTAGCCCGG
51043490 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:51049194 original size:40 final size:40
Alignment explanation
Indices: 51049139--51049218 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
51049129 GGGCCAAGCT
51049139 ATGTAATCCACATGGCCAAGGCCATTTCTAGGCTATGTGG
1 ATGTAATCCACATGGCCAAGGCCATTTCTAGGCTATGTGG
51049179 ATGTAATCCACATGGCCAAGGCCATTTCTAGGCTATGTGG
1 ATGTAATCCACATGGCCAAGGCCATTTCTAGGCTATGTGG
51049219 GCCACACGGG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.28
Consensus pattern (40 bp):
ATGTAATCCACATGGCCAAGGCCATTTCTAGGCTATGTGG
Found at i:51049421 original size:26 final size:26
Alignment explanation
Indices: 51049360--51049415 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
51049350 ACCGCCAATT
* * **
51049360 GATAAGATAACTGTTATGCCCCTGTGT
1 GATAA-ATGACTGTTATGCCCCTATAA
51049387 GATAAATGACTGTTATGCCCCTATAA
1 GATAAATGACTGTTATGCCCCTATAA
51049413 GAT
1 GAT
51049416 GTATGATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (26 bp):
GATAAATGACTGTTATGCCCCTATAA
Found at i:51055018 original size:39 final size:39
Alignment explanation
Indices: 51054975--51055114 Score: 165
Period size: 39 Copynumber: 3.6 Consensus size: 39
51054965 ACCAGCTCGA
* * **
51054975 AGCCTGCAGAACTTTAGTCCGGATATTTTTCCAGCA-AGT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACA-T
** *
51055014 AGCCTGTGGACCTTAAGTCTGGATATAATTCCAGCACAT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
* * * *
51055053 TGCCTGCGGACCTTAAGTCCGAATATAATTCCAGCATAT
1 AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
51055092 AGCCTGCAGACCTTAAGTCCGGA
1 AGCCTGCAGACCTTAAGTCCGGA
51055115 ATCGCATCAA
Statistics
Matches: 85, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
39 84 0.99
40 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (39 bp):
AGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACAT
Found at i:51059140 original size:40 final size:39
Alignment explanation
Indices: 51059032--51059238 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 39
51059022 TCTTCGGAAT
* *
51059032 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * *
51059070 TTAACCCGGATTTGGTA-ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* *
51059110 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* *
51059150 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* *
51059190 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
51059230 TTAGCCCGG
1 TTAGCCCGG
51059239 TATCATTCAA
Statistics
Matches: 147, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
38 4 0.03
39 22 0.15
40 119 0.81
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:51066743 original size:40 final size:40
Alignment explanation
Indices: 51066694--51066901 Score: 231
Period size: 40 Copynumber: 5.2 Consensus size: 40
51066684 TCTTCGGAAT
* * * *
51066694 TTAG-CCGGATGTAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * ** * *
51066733 TTAACCCGGATTTGGTAACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* *
51066773 TTAGCCCGGATATAA-CAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAATC-ACTAGCACAAATGCCTTCGGGTC
* *
51066813 TTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
* * * *
51066853 TTAGCTCGGATATAATCGCTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
51066893 TTAGCCCGG
1 TTAGCCCGG
51066902 GCATCATTCA
Statistics
Matches: 143, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 3 0.02
40 139 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAATCACTAGCACAAATGCCTTCGGGTC
Found at i:51076266 original size:21 final size:20
Alignment explanation
Indices: 51076227--51076266 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
51076217 CAAAACTAGT
*
51076227 ATAACTATCATTAAACATTC
1 ATAACTATCATCAAACATTC
*
51076247 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
51076267 AAAGTTCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:51076285 original size:27 final size:28
Alignment explanation
Indices: 51076233--51076289 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
51076223 TAGTATAACT
*
51076233 ATCATTAAACATTCATAATCTATCATCA
1 ATCATTAAACATTCATAATATATCATCA
*
51076261 ATCATTAAA-GTTCATACATAT-TCATCA
1 ATCATTAAACATTCATA-ATATATCATCA
51076288 AT
1 AT
51076290 GGAAACATCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 14 0.54
28 12 0.46
ACGTcount: A:0.42, C:0.19, G:0.02, T:0.37
Consensus pattern (28 bp):
ATCATTAAACATTCATAATATATCATCA
Found at i:51083728 original size:38 final size:38
Alignment explanation
Indices: 51083666--51083745 Score: 115
Period size: 38 Copynumber: 2.1 Consensus size: 38
51083656 CAGGACACAT
*
51083666 GGCAACCCTATTTTATCATTAACAAAGATTAAACTGTA
1 GGCAACCCTATTTTATCATCAACAAAGATTAAACTGTA
* * * *
51083704 GGCAACCCTCTTTTGTCATCAACAAAGGTTAAATTGTA
1 GGCAACCCTATTTTATCATCAACAAAGATTAAACTGTA
51083742 GGCA
1 GGCA
51083746 TAATAAGAAC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (38 bp):
GGCAACCCTATTTTATCATCAACAAAGATTAAACTGTA
Found at i:51094480 original size:40 final size:40
Alignment explanation
Indices: 51094420--51094603 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 40
51094410 TATTCGAATG
* *
51094420 ATATCCGGGCTAAG-TCCCGAAGTCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * * *
51094460 ATATCCGGACTAAGATCCGAAGGCAATTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
51094500 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
51094540 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
51094580 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
51094604 CTTGTGCGAG
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:51094553 original size:80 final size:80
Alignment explanation
Indices: 51094420--51094603 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
51094410 TATTCGAATG
* * * *
51094420 ATATCCGGGCTAAGTCCCGAAGTCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
51094484 AATTGTGCGAGTTG-CT
65 AATTATGCGAG-TGACC
* *
51094500 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
* *
51094565 TTTATGCTAGTGACC
66 ATTATGCGAGTGACC
51094580 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
51094604 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 3 0.03
80 89 0.97
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
ATTATGCGAGTGACC
Found at i:51096414 original size:44 final size:42
Alignment explanation
Indices: 51096273--51096426 Score: 141
Period size: 44 Copynumber: 3.6 Consensus size: 42
51096263 ATATACACTA
* * * *
51096273 CCAACGTCCCAGACGTAGTCTTACATGTAATCAAACATTGATG
1 CCAACGTCCCAGACATGGTCTTACATGTAAACAAA-ATCGATG
* * *** *
51096316 CC-ACTGTCCCAGACAGGGTCTTACACG-AAGTTAGATACGATG
1 CCAAC-GTCCCAGACATGGTCTTACATGTAAACAAAAT-CGATG
*
51096358 CCAATGTCCCAGACATGGTCTTACATGTAAAACAAAAGTCGATG
1 CCAACGTCCCAGACATGGTCTTACATGT-AAACAAAA-TCGATG
*
51096402 CCAACGTCCCAGACGTGGTCTTACA
1 CCAACGTCCCAGACATGGTCTTACA
51096427 CGATATCACA
Statistics
Matches: 87, Mismatches: 18, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 31 0.36
43 21 0.24
44 32 0.37
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (42 bp):
CCAACGTCCCAGACATGGTCTTACATGTAAACAAAATCGATG
Found at i:51096423 original size:86 final size:85
Alignment explanation
Indices: 51096273--51096429 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 85
51096263 ATATACACTA
* * *
51096273 CCAACGTCCCAGACGTAGTCTTACATGTAATCAAACATTGATGCCACTGTCCCAGACAGGGTCTT
1 CCAACGTCCCAGACATAGTCTTACATGTAAACAAACATCGATGCCACTGTCCCAGACAGGGTCTT
51096338 ACACGAAGTTAGATACGATG
66 ACACGAAGTTAGATACGATG
* *
51096358 CCAATGTCCCAGACATGGTCTTACATGTAAAACAAA-AGTCGATGCCAAC-GTCCCAGAC-GTGG
1 CCAACGTCCCAGACATAGTCTTACATGT-AAACAAACA-TCGATGCC-ACTGTCCCAGACAG-GG
51096420 TCTTACACGA
62 TCTTACACGA
51096430 TATCACATAT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 27 0.43
86 34 0.54
87 2 0.03
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (85 bp):
CCAACGTCCCAGACATAGTCTTACATGTAAACAAACATCGATGCCACTGTCCCAGACAGGGTCTT
ACACGAAGTTAGATACGATG
Found at i:51100281 original size:28 final size:28
Alignment explanation
Indices: 51100212--51100312 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51100202 GACAAGATTG
* * * *
51100212 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
51100242 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51100270 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
51100299 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51100313 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51100306 original size:29 final size:28
Alignment explanation
Indices: 51100241--51100312 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
51100231 AAAATTGTAC
*
51100241 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
51100269 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
51100298 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51100313 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:51108365 original size:28 final size:28
Alignment explanation
Indices: 51108296--51108396 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
51108286 GACAAGATTG
* * * *
51108296 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
51108326 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
51108354 GCACTAAGTGTGCGAG-CTGAATGTATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
51108383 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
51108397 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 24 0.38
29 20 0.31
30 18 0.28
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:51108390 original size:29 final size:28
Alignment explanation
Indices: 51108325--51108396 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 28
51108315 AAAATTGTAC
*
51108325 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTCTGATTATAT
51108353 AGCACTAAGTGTGCGAG-CTGAATGTATAT
1 AGCACTAAGTGTGCGAGTCTG-AT-TATAT
51108382 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51108397 GATTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTCTGATTATAT
Found at i:51115392 original size:125 final size:125
Alignment explanation
Indices: 51115142--51115404 Score: 287
Period size: 125 Copynumber: 2.1 Consensus size: 125
51115132 AATATTTTTT
* * **
51115142 TTTTGAAATTTCATCCATGTTTTCTTAAACTAAAATGAAACAATATCTCGTGTTTGGAAGTTTGA
1 TTTTGAAATTTCATCCATGTTTTCTTAAACTAAAATGAAACAATATCTCGTATTTGGAAATTCAA
* * ** * ****
51115207 GAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTTGACTAAGATATGGGAAATCC
66 GAAATCGTGCCCAATCGTGCTGGGTGTCGATTTACCATTTGACCAAGATAACCCAAATCC
* * * ** *
51115267 TTTTGACATTTCATCCATGTTTTCTTAAATTAGAATGAGGCAATATTTCGTATTTGGAAATTCAA
1 TTTTGAAATTTCATCCATGTTTTCTTAAACTAAAATGAAACAATATCTCGTATTTGGAAATTCAA
* * *
51115332 TAAATCGTGCCCAATCGTGCTGGGATGT-GATTTACCGTTTGGCCAA-ATAACCCAATATCC
66 GAAATCGTGCCCAATCGTGCTGGG-TGTCGATTTACCATTTGACCAAGATAACCCAA-ATCC
*
51115392 TTTCGAAATTTCA
1 TTTTGAAATTTCA
51115405 AATGCATGAG
Statistics
Matches: 112, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
124 5 0.04
125 105 0.94
126 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (125 bp):
TTTTGAAATTTCATCCATGTTTTCTTAAACTAAAATGAAACAATATCTCGTATTTGGAAATTCAA
GAAATCGTGCCCAATCGTGCTGGGTGTCGATTTACCATTTGACCAAGATAACCCAAATCC
Done.