Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 174 of 328
Found at i:51435770 original size:16 final size:16
Alignment explanation
Indices: 51435732--51435770 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
51435722 ATCTCCAAAA
*
51435732 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
51435748 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
51435764 AATAACT
1 AAAAACT
51435771 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:51435971 original size:30 final size:30
Alignment explanation
Indices: 51435937--51436022 Score: 145
Period size: 30 Copynumber: 2.9 Consensus size: 30
51435927 GTGGTGGTAG
* *
51435937 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
51435967 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
51435997 AGTGTGACTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
51436023 CAAAGGCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.19, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:51436804 original size:87 final size:89
Alignment explanation
Indices: 51436638--51437224 Score: 457
Period size: 87 Copynumber: 6.6 Consensus size: 89
51436628 TCTTTACTCG
* * ** * * *
51436638 GCATGTGATCC-AGAGCTTAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAC-TAGACA-T
1 GCATGTGAGCCGAG-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAACATA-A-ATT
* *
51436700 TG-AAAACATAAATTGAAAATAGCTCA
63 TGAAAAACAGAAATTGAAAATACCTCA
* * * *
51436726 GCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACA-AAATTTGT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAACATAAATTTGA
** * *
51436789 AAAACAGATTTTGAAAATATCTCG
66 AAAACAGAAATTGAAAATACCTCA
* * * ** * *
51436813 GTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTGCAAAGCATAAATTAAA
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAACATAAATT--T
* ** *
51436878 AAAAAACATCAATTGAAAATACCTCG
64 GAAAAACAGAAATTGAAAATACCTCA
*
51436904 GCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAA-
1 GCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-A-AAACATAAAT
*
51436967 TTGAAAAAAAAAAGAAATTGAAAATACCTCA
62 TTG---AAAAACAGAAATTGAAAATACCTCA
** * *
51436998 GC--GTGTTCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAAT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT---AAAACATAAAT
*
51437060 TTGAAAAACAGAATTTGAAAATACCTCA
62 TTGAAAAACAGAAATTGAAAATACCTCA
* * * * * * * *
51437088 GCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGATATT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTAAAACATAAAT-TT
* * *
51437153 GAAGAACAGAAATGGAAAACACCTCA
64 GAAAAACAGAAATTGAAAATACCTCA
* * * *
51437179 GCATCT----TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
51437225 TGAAAGATAG
Statistics
Matches: 410, Mismatches: 66, Indels: 48
0.78 0.13 0.09
Matches are distributed among these distances:
85 1 0.00
86 10 0.02
87 97 0.24
88 44 0.11
89 12 0.03
90 30 0.07
91 85 0.21
92 88 0.21
93 11 0.03
94 32 0.08
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (89 bp):
GCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAACATAAATTTGA
AAAACAGAAATTGAAAATACCTCA
Found at i:51437035 original size:92 final size:92
Alignment explanation
Indices: 51436738--51437244 Score: 421
Period size: 91 Copynumber: 5.6 Consensus size: 92
51436728 ACGTGAGCCA
* * *
51436738 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTG---TAAAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA-TTGAAAAAAAAAAG
** * * ** * *
51436796 ATTTTGAAAATATCTCGGTATGTGACCCG
65 AAATTGAAAATACCTCAGCGTGTG-TCTG
* * *
51436825 AGGCTCAACTCACCTCTCGTAATATGAGTTGA---TTTTGCAAAGCATAAATT-AAAAAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAAAAAAA-A
** * *
51436886 TCAATTGAAAATACCTCGGCGTGTGACCTG
64 GAAATTGAAAATACCTCAGCGTGTG-TCTG
*
51436916 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAAAAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAAAAAAAAG
51436981 AAATTGAAAATACCTCAGCGTGT-TCTG
65 AAATTGAAAATACCTCAGCGTGTGTCTG
* *
51437008 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG---AAAAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G-AAAACAGAAA-TTGAAAAAAAAA
* *
51437069 AGAATTTGAAAATACCTCAGCGTGTGAGTC-A
63 AGAAATTGAAAATACCTCAGCGTGT--GTCTG
* * * * *
51437100 AGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGATATTG---AAGAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAAAAAAAG
* * * *
51437162 AAATGGAAAACACCTCAGC--ATCT-TG
65 AAATTGAAAATACCTCAGCGTGTGTCTG
* * *
51437187 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGATAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
51437245 TACCTCAACG
Statistics
Matches: 357, Mismatches: 39, Indels: 45
0.81 0.09 0.10
Matches are distributed among these distances:
86 4 0.01
87 80 0.22
88 7 0.02
89 4 0.01
90 37 0.10
91 84 0.24
92 82 0.23
93 12 0.03
94 38 0.11
95 9 0.03
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (92 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAAAAGA
AATTGAAAATACCTCAGCGTGTGTCTG
Found at i:51437080 original size:13 final size:14
Alignment explanation
Indices: 51437048--51437080 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
51437038 GATTTTTTTG
51437048 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
51437062 GAAAAACAGAATTT
1 GAAAAACAAAATTT
51437076 GAAAA
1 GAAAA
51437081 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:51437298 original size:73 final size:73
Alignment explanation
Indices: 51437151--51437540 Score: 488
Period size: 73 Copynumber: 5.3 Consensus size: 73
51437141 AACACAGATA
* * ** *
51437151 TTGAAGAACAGAAATGGAAAACACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
51437214 GCTGATTTTT
65 GTTGA-TTTT
*
51437224 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
51437289 GTTGA-TTT
65 GTTGATTTT
* * * *
51437297 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
51437360 GCTGATTTTT
65 GTTGA-TTTT
*
51437370 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
51437435 GTTGA-TTT
65 GTTGATTTT
* * * *
51437443 TTGACAAACAAAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATG
1 TTGA-AAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
51437507 AGTTGAGTTTT
64 AGTTGA-TTTT
51437518 TTGAAAAACAGAAATTGAAAATA
1 TTG-AAAACAGAAATTGAAAATA
51437541 GAAATGGAAA
Statistics
Matches: 277, Mismatches: 25, Indels: 28
0.84 0.08 0.08
Matches are distributed among these distances:
71 37 0.13
72 8 0.03
73 131 0.47
74 6 0.02
75 90 0.32
76 5 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:51437438 original size:146 final size:146
Alignment explanation
Indices: 51437173--51437540 Score: 628
Period size: 146 Copynumber: 2.5 Consensus size: 146
51437163 AATGGAAAAC
* *
51437173 ACCTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGATAGAAA
1 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
*
51437238 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGACA
*
51437303 AACAAAAATTGAAATT
131 AACAAAAATTAAAATT
51437319 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
1 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
51437384 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGACA
51437449 AACAAAAATTAAAATT
131 AACAAAAATTAAAATT
* * * * * *
51437465 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAGTTTTTTGAAAAACAGA
1 ACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGA
51437530 AATTGAAAATA
64 AATTGAAAATA
51437541 GAAATGGAAA
Statistics
Matches: 210, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
146 150 0.71
148 60 0.29
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (146 bp):
ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTGACA
AACAAAAATTAAAATT
Found at i:51437824 original size:77 final size:76
Alignment explanation
Indices: 51437629--51438005 Score: 430
Period size: 77 Copynumber: 5.0 Consensus size: 76
51437619 TAAAAAAATT
* ** * * * *
51437629 AAAAACAGAATTTGAAAGGACCTCAACGTGTGGCCCGAGACTTAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
51437694 TTGA-TTTTTCG-
64 TTGATTTTTTTGA
* * *
51437705 AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
51437770 GATTTTTTTGA
66 GATTTTTTTGA
* * *
51437781 TAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
51437846 TGA--TTTTTGA
65 TGATTTTTTTGA
* * * * * *
51437856 CAAATA-A-AAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCACAATATGAGC
1 -AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
51437917 TGATTTTTTTG-
65 TGATTTTTTTGA
* * * * *
51437928 AAAGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
51437993 GATTTTTTTGA
66 GATTTTTTTGA
51438004 AA
1 AA
51438006 CATAAATTAA
Statistics
Matches: 260, Mismatches: 31, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
71 38 0.15
72 1 0.00
73 39 0.15
74 34 0.13
75 59 0.23
76 28 0.11
77 61 0.23
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTTGA
Found at i:51437983 original size:146 final size:149
Alignment explanation
Indices: 51437629--51437999 Score: 471
Period size: 146 Copynumber: 2.5 Consensus size: 149
51437619 TAAAAAAATT
* ** * * * *
51437629 AAAAACAGAATTTGAAAGGACCTCAACGTGTGGCCCGAGACTTAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAACATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
51437694 TTGATTTTTCGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCA
64 TTGATTTTTCGAAAAGCAAAAATTGAAAATACCTCAGCG-GTCCCGAGGCTCAACTCACCTCTCA
*
51437759 CAATATGAGTTGATTTTTTTGA
128 CAATATGAGCTGATTTTTTTGA
* * * * *
51437781 TAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -AAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * ** *
51437846 TGATTTTT-GACAAA-TAAAAATTGAAATTACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCAC
65 TGATTTTTCGA-AAAGCAAAAATTGAAAATACCTCAGCGGTCCCGAGGCTCAACTCACCTCTCAC
51437908 AATATGAGCTGATTTTTTTG-
129 AATATGAGCTGATTTTTTTGA
* * *
51437928 AAAGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
51437993 GATTTTT
66 GATTTTT
51438000 TTGAAACATA
Statistics
Matches: 194, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
146 64 0.33
148 42 0.22
150 21 0.11
151 41 0.21
153 26 0.13
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (149 bp):
AAAAACAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTCGAAAAGCAAAAATTGAAAATACCTCAGCGGTCCCGAGGCTCAACTCACCTCTCACAA
TATGAGCTGATTTTTTTGA
Found at i:51438032 original size:15 final size:15
Alignment explanation
Indices: 51438003--51438032 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
51437993 GATTTTTTTG
51438003 AAACATAAATTAAAA
1 AAACATAAATTAAAA
51438018 AAACA-AAATTAAAA
1 AAACATAAATTAAAA
51438032 A
1 A
51438033 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
AAACATAAATTAAAA
Found at i:51438176 original size:332 final size:334
Alignment explanation
Indices: 51437782--51438419 Score: 955
Period size: 332 Copynumber: 1.9 Consensus size: 334
51437772 TTTTTTTGAT
* * * *
51437782 AAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * ** *
51437847 GATTTTTGACAAATAAAAATTGAAATTACCTCAGCGT-CTTGAGGTTCAACTCACCTCTCACAAT
66 GATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCACAAT
*
51437911 ATGAGCTGATTTTTTTG-AAAGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCA
131 ATGAGCTGA--TTTTTGAAAAG-CAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCA
*
51437975 CTTCTCGCAATATGAGTTGATTTTTTTG-AAA-CATAAATTAAAAAAAC-AAAATTAAAAATACC
193 CCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCATAAATTAAAAAAACGAAAATTAAAAATACC
*
51438037 TCAGCGTGT-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGAAGAATTTGT
257 TCAGCGTGTACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGAAGAATTTGT
51438101 AAGGCAAAAATTG
322 AAGGCAAAAATTG
51438114 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * **
51438179 GATTTTTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCGAGGCTCAGCTCACCTCTTGCAAT
66 GATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCACAAT
* * * * *
51438244 ATGAGTTGATTTTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
131 ATGAGCTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCT
* *
51438309 CTCGCAATATGAGTTGATTTTTTGAAAAGCATAAATTGAAAAAACGAAAATTGAAAATACCTCAG
196 CTCGCAATATGAGTTGATTTTTTGAAAAGCATAAATTAAAAAAACGAAAATTAAAAATACCTCAG
51438374 CGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTT
261 CGTGT-ACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTT
51438420 TTTTGAAAGA
Statistics
Matches: 273, Mismatches: 26, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
330 7 0.03
331 65 0.24
332 111 0.41
333 52 0.19
335 38 0.14
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (334 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCACAAT
ATGAGCTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAACATGTCCTGAGGCTCAACTCACCT
CTCGCAATATGAGTTGATTTTTTGAAAAGCATAAATTAAAAAAACGAAAATTAAAAATACCTCAG
CGTGTACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGAAGAATTTGTAAGG
CAAAAATTG
Found at i:51438255 original size:72 final size:72
Alignment explanation
Indices: 51438111--51438351 Score: 347
Period size: 73 Copynumber: 3.3 Consensus size: 72
51438101 AAGGCAAAAA
*
51438111 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGA
51438176 GTTGATTT
65 GTTGATTT
* * *
51438184 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCGAGGCTCAGCTCACCTCTTGCAATATGAG
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAG
51438249 TTGATTT
66 TTGATTT
* * * * *
51438256 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGA
51438321 GTTGATTTT
65 GTTGA-TTT
* *
51438330 TTGAAAAGCATAAATTGAAAAA
1 TTGAAAAACAGAAATT-AAAAA
51438352 ACGAAAATTG
Statistics
Matches: 151, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
72 62 0.41
73 67 0.44
74 19 0.13
75 3 0.02
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (72 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:51438374 original size:145 final size:145
Alignment explanation
Indices: 51438111--51438374 Score: 327
Period size: 145 Copynumber: 1.8 Consensus size: 145
51438101 AAGGCAAAAA
51438111 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
***** *** **
51438176 GTTGATTTTTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCGAGGCTCAGCTCACCTCTTGC
66 GTTGATTTTTGAAAAACAGAAATTAAAAATACCGAAAAGTGCAAAAACCTCAGCTCACCTCTTGC
51438241 AATATGAGTTGATTT
131 AATATGAGTTGATTT
* * * *
51438256 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
51438321 GTTGATTTTTTGAAAAGCATAAATTGAAAAA-A-CGAAAATTG-AAAATACCTCAGC
66 GTTGA-TTTTTGAAAAACAGAAATT-AAAAATACCGAAAAGTGCAAAA-ACCTCAGC
51438375 GTGTGACCTG
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
144 1 0.01
145 75 0.76
146 18 0.18
147 5 0.05
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (145 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAAACAGAAATTAAAAATACCGAAAAGTGCAAAAACCTCAGCTCACCTCTTGC
AATATGAGTTGATTT
Found at i:51438450 original size:91 final size:89
Alignment explanation
Indices: 51438267--51438436 Score: 270
Period size: 91 Copynumber: 1.9 Consensus size: 89
51438257 TGAAAAGCAT
* *
51438267 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
51438332 GAAAAGCATAAATTGAAAAAACGA
66 GAAAAGCAGAAATTGAAAAAACGA
51438356 AAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGA-TTT
51438421 TTTG-AAAGACAGAAAT
63 TTTGAAAAG-CAGAAAT
51438437 AAAAACATCA
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
89 22 0.30
91 39 0.53
92 13 0.18
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAGCAGAAATTGAAAAAACGA
Found at i:51445618 original size:21 final size:23
Alignment explanation
Indices: 51445558--51445634 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 23
51445548 GTGATAATAT
*
51445558 TAAAAATATGTACATAATATAGTG
1 TAAAAATAT-TACATAATATAATG
*
51445582 TAAAAATACATACATAATATAAT-
1 TAAAAATA-TTACATAATATAATG
*
51445605 T-AAAATATTACATAAGATAACATG
1 TAAAAATATTACATAATAT-A-ATG
51445629 TAAAAA
1 TAAAAA
51445635 AAATATATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
21 9 0.20
22 7 0.16
23 3 0.07
24 21 0.48
25 4 0.09
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.30
Consensus pattern (23 bp):
TAAAAATATTACATAATATAATG
Found at i:51445677 original size:23 final size:21
Alignment explanation
Indices: 51445639--51445692 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
51445629 TAAAAAAAAT
*
51445639 ATATATAATAATATAGTATTAAAG
1 ATATAT-ATAAAATAGTA-T-AAG
*
51445663 ATATATATAAAATAGTATAAT
1 ATATATATAAAATAGTATAAG
51445684 ATATATATA
1 ATATATATA
51445693 CGTAATATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 11 0.39
22 1 0.04
23 10 0.36
24 6 0.21
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (21 bp):
ATATATATAAAATAGTATAAG
Found at i:51445765 original size:23 final size:25
Alignment explanation
Indices: 51445722--51445767 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51445712 TATACCTAAT
51445722 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
51445747 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
51445768 ACAAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:51448436 original size:40 final size:40
Alignment explanation
Indices: 51448370--51448536 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
51448360 AAATTGAATG
* * *
51448370 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
51448409 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
51448449 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
51448489 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
51448529 ATATCCGG
1 ATATCCGG
51448537 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51456437 original size:40 final size:40
Alignment explanation
Indices: 51456371--51456537 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
51456361 AAATTGAATG
* * *
51456371 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
51456410 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
51456450 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
51456490 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
51456530 ATATCCGG
1 ATATCCGG
51456538 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:51463054 original size:27 final size:28
Alignment explanation
Indices: 51462998--51463067 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
51462988 AAACTTGTAC
51462998 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
51463026 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
51463053 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
51463068 GACTTACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:51463078 original size:27 final size:27
Alignment explanation
Indices: 51462998--51463079 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
51462988 AAACTTGTAC
*
51462998 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGA-CTTGACT-ATAT
* *
51463026 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGACTATAT
51463053 AGCACTAAGTGTGCGGACTT-ACTATAT
1 AGCACTAAGTGTGC-GACTTGACTATAT
51463080 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
27 28 0.57
28 21 0.43
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGACTATAT
Found at i:51466217 original size:42 final size:42
Alignment explanation
Indices: 51466158--51466279 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
51466148 TTAGGGTTAC
51466158 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
* ** * *
51466200 TGAGACTT-CGTGTAAGACCATACCTAGGCTTTTGGCATTGATA
1 TGAGA-TTACGTGTAAGACCATATCT-GGGATATGGCATCGATA
* *
51466243 TGAGATTACATGTAAGACCATATATGGGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
51466280 TGGTACGATA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:51469622 original size:43 final size:43
Alignment explanation
Indices: 51469572--51469722 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 43
51469562 GATTAATGAG
**
51469572 ATGTGATTATGTGTAAGACCATGTCTGGGACATTAGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCATT
* * * *
51469615 ATGTGATTACGTGTAAAACCATGTCTGGGACATTGGCATCGTT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCATT
* * *
51469658 ATTTGATTTCATGTAAGACCATAGT-TGGG-CTATCAGCATCGA-T
1 ATGTGATTACATGTAAGACCAT-GTCTGGGAC-ATTAGCATC-ATT
*
51469701 ATGTGATAACATGTAAGACCAT
1 ATGTGATTACATGTAAGACCAT
51469723 ATTTGGGATA
Statistics
Matches: 91, Mismatches: 14, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 88 0.97
44 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTAGCATCATT
Found at i:51470786 original size:19 final size:19
Alignment explanation
Indices: 51470750--51470788 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
51470740 TTTTCATCAT
* *
51470750 AGTAAAATAAAATAATAAA
1 AGTAAAACAAAACAATAAA
*
51470769 AGTAAAACAAAACCATAAA
1 AGTAAAACAAAACAATAAA
51470788 A
1 A
51470789 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.72, C:0.08, G:0.05, T:0.15
Consensus pattern (19 bp):
AGTAAAACAAAACAATAAA
Found at i:51471294 original size:28 final size:27
Alignment explanation
Indices: 51471252--51471341 Score: 110
Period size: 28 Copynumber: 3.2 Consensus size: 27
51471242 GTGACAGAGT
*
51471252 CACCAGATACAGATATTTTGTAGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
51471281 CACCAGAACAGATATATGTGGCAGCGC
1 CACCAGAACAGATATTTGTGGCAGTGC
51471308 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
51471336 CACCAG
1 CACCAG
51471342 GACGCTTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
27 23 0.43
28 24 0.44
29 7 0.13
ACGTcount: A:0.33, C:0.24, G:0.22, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:51471309 original size:27 final size:28
Alignment explanation
Indices: 51471226--51471341 Score: 112
Period size: 27 Copynumber: 4.2 Consensus size: 28
51471216 CAGCATGGCT
* * *
51471226 ACCAGATACAGA-AAATGTGACAGAGTC
1 ACCAGATACAGATATATGTGGCAGAGCC
* * *
51471253 ACCAGATACAGATATTTTGTAGCAGTGCC
1 ACCAGATACAGATA-TATGTGGCAGAGCC
*
51471282 ACCAGA-ACAGATATATGTGGCAGCGCC
1 ACCAGATACAGATATATGTGGCAGAGCC
* *
51471309 ACCAGA-ACAGATAATTTGTGGCATAGCC
1 ACCAGATACAGAT-ATATGTGGCAGAGCC
51471337 ACCAG
1 ACCAG
51471342 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
27 35 0.47
28 25 0.34
29 14 0.19
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (28 bp):
ACCAGATACAGATATATGTGGCAGAGCC
Found at i:51471327 original size:55 final size:56
Alignment explanation
Indices: 51471217--51471341 Score: 139
Period size: 56 Copynumber: 2.2 Consensus size: 56
51471207 AGAAATATGC
* * * *
51471217 AGCATGGCTACCAGATACAGAAAATGTGACAGAGTCACCAGATACAGATATTTTGT
1 AGCATAGCCACCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGT
* * *
51471273 AGCAGT-GCCACCAGA-ACAGATATATGTGGCAGCGCCACCAGA-ACAGATAATTTGT
1 AGCA-TAGCCACCAGATACAGA-AAATGTGACAGAGCCACCAGATACAGATAATTTGT
*
51471328 GGCATAGCCACCAG
1 AGCATAGCCACCAG
51471342 GACGCTTCCT
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
54 1 0.02
55 28 0.47
56 29 0.49
57 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
AGCATAGCCACCAGATACAGAAAATGTGACAGAGCCACCAGATACAGATAATTTGT
Found at i:51471494 original size:28 final size:28
Alignment explanation
Indices: 51471451--51471511 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
51471441 TAACCCTAGA
*
51471451 GGTATAAAGGTCATTTTGCATACATAGG
1 GGTATAAAGGTAATTTTGCATACATAGG
*
51471479 GGTATAATGGTAATTTTGCATACATAGG
1 GGTATAAAGGTAATTTTGCATACATAGG
51471507 GGTAT
1 GGTAT
51471512 TCTAGTACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.34
Consensus pattern (28 bp):
GGTATAAAGGTAATTTTGCATACATAGG
Found at i:51473640 original size:46 final size:46
Alignment explanation
Indices: 51473504--51473640 Score: 175
Period size: 46 Copynumber: 3.0 Consensus size: 46
51473494 GAACATGTAT
* *
51473504 ATATGTGGTAAGGCCGAATGGCTAATGAGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * * *
51473550 ATATGAGGTAAAGCTGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
* * * * *
51473596 ATATGTGGTAAAGCCAAATGCCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATG
51473641 TGTATATATA
Statistics
Matches: 77, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.35, C:0.08, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGAGAAATGTGTATGAGATGG
Found at i:51475011 original size:30 final size:30
Alignment explanation
Indices: 51474977--51475062 Score: 118
Period size: 30 Copynumber: 2.9 Consensus size: 30
51474967 GTGGTGGTGG
* * * * *
51474977 AGTGTAGCTAGTAGAGTAGGTAGTGGAGTA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
51475007 AGTGTGGCTAGTGGAGTTGGTGGTAGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
51475037 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
51475063 CAAAGGCTAG
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.21, C:0.05, G:0.47, T:0.28
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:51482331 original size:26 final size:23
Alignment explanation
Indices: 51482301--51482416 Score: 114
Period size: 22 Copynumber: 5.0 Consensus size: 23
51482291 AGACTCACCA
51482301 CAGCTCGTATGAGCTTACTGATATAT
1 CAGCTCGTATGAGCTTACTG-T-T-T
*
51482327 CAGCTCGTAAGAGCTTACTGTTT
1 CAGCTCGTATGAGCTTACTGTTT
* *
51482350 CAGCTCAT-TGGAGCTTAC-CTTT
1 CAGCTCGTAT-GAGCTTACTGTTT
51482372 CAGCTCGTATGAGCTTACTGTTT
1 CAGCTCGTATGAGCTTACTGTTT
* *
51482395 -AGCTC-AATAGAGCTTATTGTTT
1 CAGCTCGTAT-GAGCTTACTGTTT
51482417 ATCAGATCGG
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
21 2 0.03
22 35 0.45
23 20 0.26
24 1 0.01
25 1 0.01
26 19 0.24
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACTGTTT
Found at i:51482386 original size:45 final size:44
Alignment explanation
Indices: 51482326--51482410 Score: 134
Period size: 45 Copynumber: 1.9 Consensus size: 44
51482316 TACTGATATA
* *
51482326 TCAGCTCGTAAGAGCTTACTGTTTCAGCTCATTGGAGCTTACCTT
1 TCAGCTCGTAAGAGCTTACTGTTT-AGCTCAATAGAGCTTACCTT
*
51482371 TCAGCTCGTATGAGCTTACTGTTTAGCTCAATAGAGCTTA
1 TCAGCTCGTAAGAGCTTACTGTTTAGCTCAATAGAGCTTA
51482411 TTGTTTATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
44 14 0.38
45 23 0.62
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (44 bp):
TCAGCTCGTAAGAGCTTACTGTTTAGCTCAATAGAGCTTACCTT
Found at i:51484802 original size:17 final size:17
Alignment explanation
Indices: 51484780--51484813 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51484770 TTGTTTGATC
51484780 GAGC-TTGTAAAGTAGAA
1 GAGCTTTGTAAAG-AGAA
51484797 GAGCTTTGTAAAGAGAA
1 GAGCTTTGTAAAGAGAA
51484814 AAGAAAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.41, C:0.06, G:0.29, T:0.24
Consensus pattern (17 bp):
GAGCTTTGTAAAGAGAA
Found at i:51487716 original size:39 final size:39
Alignment explanation
Indices: 51487662--51487743 Score: 164
Period size: 39 Copynumber: 2.1 Consensus size: 39
51487652 TAACTCTGAA
51487662 AAAGAAAGATGCTATCTGGGTTGTCGTTGATCGACTAAC
1 AAAGAAAGATGCTATCTGGGTTGTCGTTGATCGACTAAC
51487701 AAAGAAAGATGCTATCTGGGTTGTCGTTGATCGACTAAC
1 AAAGAAAGATGCTATCTGGGTTGTCGTTGATCGACTAAC
51487740 AAAG
1 AAAG
51487744 TCTGCTCATT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.27
Consensus pattern (39 bp):
AAAGAAAGATGCTATCTGGGTTGTCGTTGATCGACTAAC
Found at i:51489670 original size:40 final size:40
Alignment explanation
Indices: 51489564--51489747 Score: 147
Period size: 40 Copynumber: 4.6 Consensus size: 40
51489554 TGCTGGAAAT
* * * * * **
51489564 TATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
*
51489604 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAT
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * *
51489644 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATC-G
1 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * * * * * *
51489682 TGATATCCGGGTTAAGTCCCGTAGGCCTTGGTGCGGGTTAC
1 T-ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
* * *
51489723 CATATCCGGGCTATGTCCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGC
51489748 GTTTGAACGA
Statistics
Matches: 115, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.25
40 85 0.74
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.23
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCAC
Found at i:51493977 original size:12 final size:12
Alignment explanation
Indices: 51493960--51493991 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
51493950 GTATAGCAAA
51493960 CCTCTTCCTAAT
1 CCTCTTCCTAAT
51493972 CCTCTTCCTAAT
1 CCTCTTCCTAAT
51493984 CCTCTTCC
1 CCTCTTCC
51493992 AAACCAAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.12, C:0.47, G:0.00, T:0.41
Consensus pattern (12 bp):
CCTCTTCCTAAT
Found at i:51494921 original size:50 final size:50
Alignment explanation
Indices: 51494844--51495085 Score: 297
Period size: 50 Copynumber: 4.8 Consensus size: 50
51494834 CTTGTGAGAA
*
51494844 CACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * * * * *
51494894 CGCATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCCGATAGTTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-TT-AGGT
* * * *
51494945 CACGTGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
* * *
51494995 CACGTATGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
** * *
51495045 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
51495086 GAGCTTCGGT
Statistics
Matches: 162, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 121 0.75
51 39 0.24
52 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTTAGGT
Found at i:51495032 original size:101 final size:101
Alignment explanation
Indices: 51494848--51495032 Score: 289
Period size: 101 Copynumber: 1.8 Consensus size: 101
51494838 TGAGAACACA
* * * * *
51494848 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATGGTTAGGTCACATATGTAGTACTAAGT
*
51494913 GCAGGCTACTATGGGTACCCGATAGTTTCAATCACG
66 GCAGGCTACTACGGGTACCCGATAGTTTCAATCACG
* *
51494949 TGTGTAGTACTAAGTGCAGCCTACTACGTGTATCAGATGGTTAGGTCACGTATGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATGGTTAGGTCACATATGTAGTACTAAGT
*
51495014 GCAGGCTACTACGTGTACC
66 GCAGGCTACTACGGGTACC
51495033 AGATTGATAG
Statistics
Matches: 75, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (101 bp):
TGTGTAGTACTAAGTGCAGCCTACTACGTGTACCAGATGGTTAGGTCACATATGTAGTACTAAGT
GCAGGCTACTACGGGTACCCGATAGTTTCAATCACG
Found at i:51496811 original size:39 final size:39
Alignment explanation
Indices: 51496661--51496813 Score: 191
Period size: 40 Copynumber: 3.9 Consensus size: 39
51496651 TGTTCAAACA
* * * * * *
51496661 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
51496701 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* *
51496741 CCTTCGGG-TTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
*
51496779 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
51496814 TTCATACACA
Statistics
Matches: 99, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
38 35 0.35
39 23 0.23
40 41 0.41
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:51504616 original size:40 final size:40
Alignment explanation
Indices: 51504558--51504712 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 40
51504548 TGTTCAAACA
* * * * *
51504558 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* *
51504598 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
* * *
51504638 CCTTC-GGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGA-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
51504678 CCTTCGGG-CTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGACTTAGCCCGGATATCATAACTCGCACA
51504713 TTCATACACA
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 25 0.26
40 70 0.72
41 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:51506324 original size:16 final size:16
Alignment explanation
Indices: 51506303--51506334 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
51506293 AGAATGGAGT
51506303 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
51506319 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
51506335 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:51509123 original size:23 final size:23
Alignment explanation
Indices: 51509068--51509207 Score: 124
Period size: 23 Copynumber: 6.0 Consensus size: 23
51509058 AGACTCACCA
* *
51509068 CAGCTCGTATGAGCTTACTGATATAT
1 CAGCTCATAAGAGCTTACTG-T-T-T
51509094 CAGCTCATAAGAGCTTACTGTTT
1 CAGCTCATAAGAGCTTACTGTTT
** *
51509117 CAGCTCATTGGAGCTTACCGTTT
1 CAGCTCATAAGAGCTTACTGTTT
* * *
51509140 CAGCTCGTATGAGCTTATTG-TT
1 CAGCTCATAAGAGCTTACTGTTT
*
51509162 CAGCTCGAT-AGAGCTTACTATTT
1 CAGCTC-ATAAGAGCTTACTGTTT
*
51509185 TAGCTCA-ATAGAGCTTACTGTTT
1 CAGCTCATA-AGAGCTTACTGTTT
51509208 ATCAACTCAG
Statistics
Matches: 94, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
22 17 0.18
23 57 0.61
24 1 0.01
25 1 0.01
26 18 0.19
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (23 bp):
CAGCTCATAAGAGCTTACTGTTT
Found at i:51509190 original size:45 final size:46
Alignment explanation
Indices: 51509068--51509207 Score: 135
Period size: 45 Copynumber: 3.0 Consensus size: 46
51509058 AGACTCACCA
51509068 CAGCTCG-TATGAGCTTACTGATATATCAGCTCATAAGAGCTTACTGTTT
1 CAGCTCGATA-GAGCTTACT-AT-T-TCAGCTCATAAGAGCTTACTGTTT
* ** * * *
51509117 CAGCTC-ATTGGAGCTTACCGTTTCAGCTCGTATGAGCTTATTG-TT
1 CAGCTCGA-TAGAGCTTACTATTTCAGCTCATAAGAGCTTACTGTTT
*
51509162 CAGCTCGATAGAGCTTACTATTTTAGCTCA-ATAGAGCTTACTGTTT
1 CAGCTCGATAGAGCTTACTATTTCAGCTCATA-AGAGCTTACTGTTT
51509208 ATCAACTCAG
Statistics
Matches: 73, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
44 1 0.01
45 34 0.47
46 21 0.29
47 1 0.01
48 1 0.01
49 14 0.19
50 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (46 bp):
CAGCTCGATAGAGCTTACTATTTCAGCTCATAAGAGCTTACTGTTT
Found at i:51509190 original size:68 final size:71
Alignment explanation
Indices: 51509068--51509207 Score: 180
Period size: 68 Copynumber: 2.0 Consensus size: 71
51509058 AGACTCACCA
* * *
51509068 CAGCTCGTATGAGCTTACTGATATATCAGCTCATAAGAGCTTACTGTTTCAGCTCATTGGAGCTT
1 CAGCTCGTATGAGCTTACT-ATATATCAGCTCATAAGAGCTTACTATTTCAGCTCAATAGAGCTT
51509133 ACCGTTT
65 ACCGTTT
* *
51509140 CAGCTCGTATGAGCTTA-T-TGT-TCAGCTCGAT-AGAGCTTACTATTTTAGCTCAATAGAGCTT
1 CAGCTCGTATGAGCTTACTATATATCAGCTC-ATAAGAGCTTACTATTTCAGCTCAATAGAGCTT
*
51509201 ACTGTTT
65 ACCGTTT
51509208 ATCAACTCAG
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
68 39 0.64
69 4 0.07
71 1 0.02
72 17 0.28
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (71 bp):
CAGCTCGTATGAGCTTACTATATATCAGCTCATAAGAGCTTACTATTTCAGCTCAATAGAGCTTA
CCGTTT
Found at i:51510699 original size:18 final size:18
Alignment explanation
Indices: 51510676--51510720 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
51510666 GCCACTGTCC
51510676 CTTCTTCCTCACCT-ACAT
1 CTTCTTCCTCA-CTGACAT
*
51510694 CTTCTTTCTCACTGACAT
1 CTTCTTCCTCACTGACAT
51510712 CTTCTTCCT
1 CTTCTTCCT
51510721 TATTTACGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 2 0.08
18 22 0.92
ACGTcount: A:0.13, C:0.40, G:0.02, T:0.44
Consensus pattern (18 bp):
CTTCTTCCTCACTGACAT
Found at i:51510803 original size:26 final size:27
Alignment explanation
Indices: 51510757--51510808 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
51510747 AGCAAAGGAT
*
51510757 TCTGTAACACCCCCTTACCCGAGACCA
1 TCTGTAACACCCCCGTACCCGAGACCA
*
51510784 TCTGTAAC-GCCCCGTACCCGAGACC
1 TCTGTAACACCCCCGTACCCGAGACC
51510809 GTCGCCGGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.23, C:0.44, G:0.15, T:0.17
Consensus pattern (27 bp):
TCTGTAACACCCCCGTACCCGAGACCA
Found at i:51512160 original size:46 final size:45
Alignment explanation
Indices: 51512093--51512259 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 45
51512083 GCCCATAAGC
51512093 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCACAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTATCCACAAGT
* * * * **
51512139 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGT-TACATC-TCT
1 GAACTCGGACTCAACTCAACGAGCTCGG--GCTTCGTATCCA-CAAGT
* * * * *
51512185 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 -GAACTCGGACTCAACTCAACGAGCTCGGGC-TTCGTATCCACAAGT
*
51512232 GAACTCGGACTCAACTCAATGAGCTCGG
1 GAACTCGGACTCAACTCAACGAGCTCGG
51512260 ATACCTAGTT
Statistics
Matches: 94, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
45 1 0.01
46 58 0.62
47 33 0.35
48 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGCTCGGGCTTCGTATCCACAAGT
Found at i:51512207 original size:93 final size:93
Alignment explanation
Indices: 51512092--51512307 Score: 351
Period size: 93 Copynumber: 2.3 Consensus size: 93
51512082 CGCCCATAAG
* * * *
51512092 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCACAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
* *
51512157 ACGAGCTTGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATACCTAGTTACATCTCT
* *
51512185 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
*
51512250 ATGAGCTCGGATACCTAGTTACATCTCT
66 ACGAGCTCGGATACCTAGTTACATCTCT
51512278 CGAACTCGGACTCAACTCAACGAGTTCGGA
1 CGAACTCGGACTCAACTCAACGAGTTCGGA
51512308 TGCTCAACCA
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 113 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATACCTAGTTACATCTCT
Found at i:51512208 original size:47 final size:46
Alignment explanation
Indices: 51512139--51512310 Score: 174
Period size: 47 Copynumber: 3.7 Consensus size: 46
51512129 ATCCACAAGT
51512139 GAACTCGGACTCAACTCAACGAGCTTGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAG-TTGGATGCCTAGTTACATCTCTC
* * * *
51512186 GAACTCGGACTCAACTCAACGAGTT-CA-GAC-A-TTCGCATC-CATAAGT
1 GAACTCGGACTCAACTCAACGAGTTGGATGCCTAGTT-ACATCTC-T---C
* * *
51512232 GAACTCGGACTCAACTCAATGAGCTCGGATACCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAG-TTGGATGCCTAGTTACATCTCTC
51512279 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTT-GGATGC
51512311 TCAACCATCC
Statistics
Matches: 99, Mismatches: 14, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 2 0.02
45 1 0.01
46 25 0.25
47 51 0.52
48 1 0.01
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTGGATGCCTAGTTACATCTCTC
Found at i:51521471 original size:101 final size:103
Alignment explanation
Indices: 51521240--51521473 Score: 233
Period size: 101 Copynumber: 2.3 Consensus size: 103
51521230 TTTATTTTTT
* ** * *
51521240 AATATATTACTATACCCTTATAGGATACTTGTCAACCCTTAACTTTACTTATGGAATCTAAAATC
1 AATATTTTACTATACTTTTATAGGACACTTGTCAACCCTTAACTTTACTTATGGAATCTAAAACC
* * * ** *
51521305 TCCACTAGTAATGTATCAAATAATTTTATTATTTTTTA
66 TCCACCAGCAATGTACCAAATAATTTTACCATTATTTA
* * * * * * *
51521343 AATATTTTACTATA-TTCTATCGAACACTTGTCAACCC-TAACTTTGCTTGTGGAGTTTAAAACC
1 AATATTTTACTATACTTTTATAGGACACTTGTCAACCCTTAACTTTACTTATGGAATCTAAAACC
* * *
51521406 TTCACCGGCCATGTACCAAATAATTTT-CCATTATTTA
66 TCCACCAGCAATGTACCAAATAATTTTACCATTATTTA
*
51521443 ATTGA-TTTACTATACTTTTATAGGACACTTG
1 AAT-ATTTTACTATACTTTTATAGGACACTTG
51521474 ACAATTGCCA
Statistics
Matches: 104, Mismatches: 25, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
100 18 0.17
101 56 0.54
102 17 0.16
103 13 0.12
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (103 bp):
AATATTTTACTATACTTTTATAGGACACTTGTCAACCCTTAACTTTACTTATGGAATCTAAAACC
TCCACCAGCAATGTACCAAATAATTTTACCATTATTTA
Found at i:51521839 original size:18 final size:18
Alignment explanation
Indices: 51521816--51521861 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
51521806 GCACAACTCC
51521816 TTTTTTATATTAAAATAT
1 TTTTTTATATTAAAATAT
*
51521834 TTTTTTA-AATAAAATAT
1 TTTTTTATATTAAAATAT
51521851 TATTTTT-TATT
1 T-TTTTTATATT
51521862 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTATATTAAAATAT
Found at i:51522175 original size:13 final size:13
Alignment explanation
Indices: 51522157--51522181 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51522147 CCATCCACCG
51522157 AAAGAGAGAAAGA
1 AAAGAGAGAAAGA
51522170 AAAGAGAGAAAG
1 AAAGAGAGAAAG
51522182 GAGAAGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (13 bp):
AAAGAGAGAAAGA
Found at i:51522424 original size:60 final size:60
Alignment explanation
Indices: 51522354--51522472 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
51522344 ATTTTTTTTA
* * * *
51522354 TAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGTTTG
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTAGTGTTTG
*
51522414 TAATTATTTTAAAATTAATTTATTTGTAATTTAGGATTAAGTTATAAATTGTAGTGTTT
1 TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTAGTGTTT
51522473 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.54
Consensus pattern (60 bp):
TAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGTTATAAATTGTAGTGTTTG
Found at i:51524593 original size:33 final size:33
Alignment explanation
Indices: 51524556--51524618 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
51524546 TCCTAGTCTA
*
51524556 TATCCACCG-TCCTACTTCACTCCTCCCGACCCG
1 TATCCACCGCT-CTACTCCACTCCTCCCGACCCG
* *
51524589 TATCCATCGCTGTACTCCACTCCTCCCGAC
1 TATCCACCGCTCTACTCCACTCCTCCCGAC
51524619 TCATGTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.16, C:0.49, G:0.10, T:0.25
Consensus pattern (33 bp):
TATCCACCGCTCTACTCCACTCCTCCCGACCCG
Found at i:51524891 original size:76 final size:78
Alignment explanation
Indices: 51524808--51524951 Score: 204
Period size: 76 Copynumber: 1.9 Consensus size: 78
51524798 AATAACTTTA
*
51524808 TATTTATGTAATGAATTTTTTGGT-ATTTTGTTTATCA-ATTTA-AATTTTTTTGTTGCAATTTA
1 TATTTATGTAATGAATTTTTT-GTCATTTTATTTATCAGATTTATAATTTTTTTGTTGCAATTTA
51524870 AATAGTCAAGTTTG
65 AATAGTCAAGTTTG
* * ** *
51524884 TATTTATGTAATGACTTTTTTGTCATTTTATTTATCAGTTTTATGGTTTTTTTTTTGCAATTTAA
1 TATTTATGTAATGAATTTTTTGTCATTTTATTTATCAGATTTATAATTTTTTTGTTGCAATTTAA
51524949 ATA
66 ATA
51524952 AATAAACTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
75 2 0.03
76 32 0.54
77 4 0.07
78 21 0.36
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.58
Consensus pattern (78 bp):
TATTTATGTAATGAATTTTTTGTCATTTTATTTATCAGATTTATAATTTTTTTGTTGCAATTTAA
ATAGTCAAGTTTG
Found at i:51525717 original size:16 final size:16
Alignment explanation
Indices: 51525696--51525728 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
51525686 GAAGATAGAT
51525696 GAAATCGGAAGATGTC
1 GAAATCGGAAGATGTC
51525712 GAAATCGGAAGATGTC
1 GAAATCGGAAGATGTC
51525728 G
1 G
51525729 TGTTTTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.18
Consensus pattern (16 bp):
GAAATCGGAAGATGTC
Found at i:51527632 original size:27 final size:27
Alignment explanation
Indices: 51527602--51527685 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
51527592 TGTAGGCCCC
* * *
51527602 ACCAGTCATGCCTTTGAGATAGGCTCA
1 ACCAGTCACGCCTGTCAGATAGGCTCA
* *
51527629 ACCAGTTACGGCTGTCAGATAGGCTCA
1 ACCAGTCACGCCTGTCAGATAGGCTCA
* * * *
51527656 ACTAGTTACACCTGTCAGATAGGCGCA
1 ACCAGTCACGCCTGTCAGATAGGCTCA
51527683 ACC
1 ACC
51527686 CGGATACTAT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (27 bp):
ACCAGTCACGCCTGTCAGATAGGCTCA
Found at i:51532291 original size:20 final size:21
Alignment explanation
Indices: 51532266--51532304 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
51532256 TTTAGTTACA
51532266 AATAATTA-AATATAAATATT
1 AATAATTATAATATAAATATT
*
51532286 AATAATTATATTATAAATA
1 AATAATTATAATATAAATA
51532305 AAATAAATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATAATTATAATATAAATATT
Found at i:51532309 original size:20 final size:20
Alignment explanation
Indices: 51532265--51532310 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
51532255 TTTTAGTTAC
51532265 AAATAATTAAATATAAATAT
1 AAATAATTAAATATAAATAT
* *
51532285 TAATAATTATATTATAAATA-
1 AAATAATTA-AATATAAATAT
51532305 AAATAA
1 AAATAA
51532311 ATACACAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
AAATAATTAAATATAAATAT
Found at i:51532448 original size:15 final size:15
Alignment explanation
Indices: 51532428--51532459 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
51532418 CTGAACAAGC
51532428 TTTGTTCGTGTTCAG
1 TTTGTTCGTGTTCAG
51532443 TTTGTTCGTGTTCAG
1 TTTGTTCGTGTTCAG
51532458 TT
1 TT
51532460 CGTTTAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.12, G:0.25, T:0.56
Consensus pattern (15 bp):
TTTGTTCGTGTTCAG
Found at i:51536106 original size:41 final size:41
Alignment explanation
Indices: 51536008--51536248 Score: 396
Period size: 41 Copynumber: 5.9 Consensus size: 41
51535998 TTGTAAAACA
* *
51536008 CAGAGCAATAGCGGCG-TTTTTGTAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
*
51536048 C-GAGCATTAGCGGCGCTTTTGGTAAAAAGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
*
51536088 CAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
* *
51536129 CAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTACAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
51536170 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
* *
51536211 CAGAGCATTAGCGGCGCTTTTAGTAAAACGCCACTAAA
1 CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAA
51536249 AGTTATATAA
Statistics
Matches: 189, Mismatches: 10, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
39 13 0.07
40 24 0.13
41 152 0.80
ACGTcount: A:0.29, C:0.24, G:0.27, T:0.20
Consensus pattern (41 bp):
CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGAC
Found at i:51536837 original size:24 final size:24
Alignment explanation
Indices: 51536810--51536858 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
51536800 CATATATTTA
51536810 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
51536834 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
51536858 T
1 T
51536859 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:51537313 original size:8 final size:8
Alignment explanation
Indices: 51537302--51537364 Score: 55
Period size: 8 Copynumber: 8.4 Consensus size: 8
51537292 TTTATATGTT
51537302 AATTTAAA
1 AATTTAAA
51537310 AATTATAAA
1 AATT-TAAA
**
51537319 AATTTTCA
1 AATTTAAA
51537327 AA---AAA
1 AATTTAAA
51537332 AATTT-AA
1 AATTTAAA
51537339 AATTTAAA
1 AATTTAAA
*
51537347 AA-TAAAA
1 AATTTAAA
51537354 AATTTAAA
1 AATTTAAA
51537362 AAT
1 AAT
51537365 AAAAAATAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 12
0.70 0.10 0.20
Matches are distributed among these distances:
5 3 0.07
7 13 0.30
8 19 0.44
9 8 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (8 bp):
AATTTAAA
Found at i:51537348 original size:19 final size:22
Alignment explanation
Indices: 51537307--51537364 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
51537297 ATGTTAATTT
*
51537307 AAAAATTATAAAAATTTTCAAA
1 AAAAATTATAAAAATTTTAAAA
*
51537329 AAAAATT-T-AAAATTTAAAAATA
1 AAAAATTATAAAAATTT-TAAA-A
51537351 AAAAATT-TAAAAAT
1 AAAAATTATAAAAAT
51537365 AAAAAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 7 0.23
21 3 0.10
22 16 0.52
23 5 0.16
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAAATTATAAAAATTTTAAAA
Found at i:51537349 original size:15 final size:15
Alignment explanation
Indices: 51537337--51537385 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
51537327 AAAAAAATTT
51537337 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
51537352 AAAATTTAAAAATAA
1 AAAATTTAAAAATAA
*
51537367 AAAA-TAAAAAATAA
1 AAAATTTAAAAATAA
51537381 AAAAT
1 AAAAT
51537386 AAAAAACTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 13 0.41
15 19 0.59
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AAAATTTAAAAATAA
Found at i:51537353 original size:22 final size:22
Alignment explanation
Indices: 51537328--51537391 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 22
51537318 AAATTTTCAA
* *
51537328 AAAAAATTTAAAATTTAAAAAT
1 AAAAAATTTAAAAATAAAAAAT
51537350 AAAAAATTTAAAAATAAAAAAT
1 AAAAAATTTAAAAATAAAAAAT
*
51537372 AAAAAA-TAAAAAATAAAAAA
1 AAAAAATTTAAAAATAAAAAA
51537392 CTTAAATATT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 13 0.33
22 26 0.67
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (22 bp):
AAAAAATTTAAAAATAAAAAAT
Found at i:51537368 original size:14 final size:14
Alignment explanation
Indices: 51537337--51537383 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
51537327 AAAAAAATTT
51537337 AAAATTTAAAAATAA
1 AAAATTTAAAAAT-A
51537352 AAAATTTAAAAATA
1 AAAATTTAAAAATA
* *
51537366 AAAAATAAAAAATA
1 AAAATTTAAAAATA
51537380 AAAA
1 AAAA
51537384 ATAAAAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 17 0.57
15 13 0.43
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAATTTAAAAATA
Found at i:51537369 original size:7 final size:7
Alignment explanation
Indices: 51537344--51537391 Score: 78
Period size: 7 Copynumber: 6.7 Consensus size: 7
51537334 TTTAAAATTT
51537344 AAAAATA
1 AAAAATA
*
51537351 AAAAATTT
1 AAAAA-TA
51537359 AAAAATA
1 AAAAATA
51537366 AAAAATA
1 AAAAATA
51537373 AAAAATA
1 AAAAATA
51537380 AAAAATA
1 AAAAATA
51537387 AAAAA
1 AAAAA
51537392 CTTAAATATT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
7 32 0.84
8 6 0.16
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (7 bp):
AAAAATA
Found at i:51539444 original size:21 final size:21
Alignment explanation
Indices: 51539399--51539444 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
51539389 CATTCCAATG
*
51539399 TGTTTGGAAGAAACAAAGAAG
1 TGTTTGGAAGAAACAAAGAAA
* * *
51539420 TGTTTGGAATAAATAAATAAA
1 TGTTTGGAAGAAACAAAGAAA
51539441 TGTT
1 TGTT
51539445 GTCAGCATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.22, T:0.30
Consensus pattern (21 bp):
TGTTTGGAAGAAACAAAGAAA
Found at i:51542091 original size:42 final size:43
Alignment explanation
Indices: 51542011--51542159 Score: 194
Period size: 43 Copynumber: 3.5 Consensus size: 43
51542001 TTTTTCAATT
* *
51542011 TCATGG-CTTTTAGCGGCGTTTTTGAGAAAAGCGCCGCTAAAGG
1 TCATGGTC-TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* * *
51542054 TGACGGCCTTTAGCGGCGTTTGT-AAAAAAGCGCCGCTAAAGG
1 TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
* * *
51542096 TCATAGTCTTTAGCGGCGTTTGTGGAAAAAGCGCTGCTAAAGG
1 TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
*
51542139 TCATGATCTTTAGCGGCGTTT
1 TCATGGTCTTTAGCGGCGTTT
51542160 TTTCAAATAA
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
42 37 0.40
43 54 0.59
44 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
TCATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGG
Found at i:51546014 original size:2 final size:2
Alignment explanation
Indices: 51546007--51546040 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
51545997 TTAACATGGG
51546007 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51546041 GTGTGAATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51548711 original size:40 final size:40
Alignment explanation
Indices: 51548655--51548819 Score: 181
Period size: 40 Copynumber: 4.2 Consensus size: 40
51548645 ATGATACCCA
* *
51548655 GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* * *
51548695 GGCTAAGACCCAAAGGCATTCGTGCGAGTTG-TTATATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATATCCG
* * ** *
51548735 GGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAATCCG
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
* * * *
51548775 GGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-
1 GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
51548814 GGCTAA
1 GGCTAA
51548820 ATTCTGAAGA
Statistics
Matches: 101, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
39 6 0.06
40 93 0.92
41 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATATCCG
Found at i:51550081 original size:27 final size:27
Alignment explanation
Indices: 51549999--51550249 Score: 218
Period size: 27 Copynumber: 9.4 Consensus size: 27
51549989 ATCCATGTTT
* **
51549999 AAAATA-CTTTGGTTTACAAAATTACC
1 AAAATACCCTTGGTTTGTAAAATTACC
* *
51550025 AAAATACCC-TGCTTTGTAAAATTACT
1 AAAATACCCTTGGTTTGTAAAATTACC
*
51550051 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATACCCTTGGTTTGTAAAATTACC
* * *
51550078 AAAATTCCCCTAGTTTGTAAAATTACC
1 AAAATACCCTTGGTTTGTAAAATTACC
* * *
51550105 AAAATACCCCTAGTTTGTAAAATTATC
1 AAAATACCCTTGGTTTGTAAAATTACC
* *
51550132 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATACCCTTGGTTTGTAAAATTACC
* ** * *
51550159 AAAATACCCCTAATTTGTGAAATTACT
1 AAAATACCCTTGGTTTGTAAAATTACC
* * *** **
51550186 GAAATACCCTCGACCTGTAAAATTATT
1 AAAATACCCTTGGTTTGTAAAATTACC
* **
51550213 GAAATACCCTTGACTTGTAAAATTACC
1 AAAATACCCTTGGTTTGTAAAATTACC
*
51550240 AAAGTACCCT
1 AAAATACCCT
51550250 CGATTTATAG
Statistics
Matches: 191, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
26 28 0.15
27 163 0.85
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATACCCTTGGTTTGTAAAATTACC
Found at i:51550153 original size:81 final size:80
Alignment explanation
Indices: 51550016--51550248 Score: 256
Period size: 81 Copynumber: 2.9 Consensus size: 80
51550006 TTTGGTTTAC
* * * *
51550016 AAAATTACCAAAATACCCTGCTTTGTAAAATTA-CTAAAATACCCTTGGTTTATAAAATTACCAA
1 AAAATTACCAAAATACCCTGATTTGTAAAATTATC-AAAATACCCCTAGTTTGTAAAATTACCAA
* *
51550080 AATTCCCCTAGTTTGT
65 AATACCCCTAATTTGT
51550096 AAAATTACCAAAATACCCCT-AGTTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAAATTACCAAAATA-CCCTGA-TTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCA
51550160 AAATACCCCTAATTTGT
64 AAATACCCCTAATTTGT
* ** ** ** * *
51550177 GAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAAATA-CCCTTGACTTGTAAAATTACCA
1 AAAATTACCAAAATACCCT-GATTTGTAAAATTATCAAAATACCCCTAG-TTTGTAAAATTACCA
*
51550241 AAGTACCC
64 AAATACCC
51550249 TCGATTTATA
Statistics
Matches: 131, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
80 24 0.18
81 105 0.80
82 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (80 bp):
AAAATTACCAAAATACCCTGATTTGTAAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAA
ATACCCCTAATTTGT
Found at i:51550168 original size:54 final size:54
Alignment explanation
Indices: 51550016--51550194 Score: 245
Period size: 54 Copynumber: 3.3 Consensus size: 54
51550006 TTTGGTTTAC
* * * *
51550016 AAAATTACCAAAATA-CCCT-GCTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTAGTTTGT
*
51550069 AAAATTACCAAAATTCCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* *
51550123 AAAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
* **
51550177 GAAATTACTGAAATACCC
1 AAAATTACCAAAATACCC
51550195 TCGACCTGTA
Statistics
Matches: 112, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
53 14 0.12
54 97 0.87
55 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.07, T:0.31
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGT
Found at i:51550264 original size:54 final size:54
Alignment explanation
Indices: 51550016--51550429 Score: 146
Period size: 54 Copynumber: 7.7 Consensus size: 54
51550006 TTTGGTTTAC
* * * * ** * ** *
51550016 AAAATTACCAAAATACCCT-GCTTTGTAAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* * * * * * * *
51550069 AAAATTACCAAAATTCCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTCGA-CTTGT
* * * * * * * *
51550123 AAAATTATCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAGTACCCTCGA-TTTATAGAATTACCGAAATACCCTC-GACTTGT
* * ** * * ** *
51550177 GAAATTACTGAAA-TACCCTCGACCTGTAAAATTATTGAAATACCCTTGACTTGT
1 AAAATTAC-CAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
*** *
51550231 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
**** *** *
51550285 AAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-T
1 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* *** *** *
51550337 ACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTT-T
1 A-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
* ***
51550391 ACAGAATTACTATTTTACCCTCGATTTATAGAATTACCG
1 A-A-AATTACCAAAGTACCCTCGATTTATAGAATTACCG
51550430 TTTTACCCCT
Statistics
Matches: 308, Mismatches: 43, Indels: 19
0.83 0.12 0.05
Matches are distributed among these distances:
52 2 0.01
53 24 0.08
54 276 0.90
55 6 0.02
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (54 bp):
AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGAAATACCCTCGACTTGT
Found at i:51550617 original size:27 final size:27
Alignment explanation
Indices: 51550244--51550616 Score: 493
Period size: 27 Copynumber: 13.8 Consensus size: 27
51550234 ATTACCAAAG
*
51550244 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
** *
51550271 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51550298 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
51550325 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
51550352 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
**
51550379 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACCGTTT
*
51550406 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
51550433 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
51550460 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
51550487 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51550514 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
51550541 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
51550568 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
51550595 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
51550617 TAAAATACCC
Statistics
Matches: 309, Mismatches: 31, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.01
27 303 0.98
28 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:51550653 original size:81 final size:81
Alignment explanation
Indices: 51550244--51550660 Score: 286
Period size: 81 Copynumber: 5.1 Consensus size: 81
51550234 ATTACCAAAG
* ** ****
51550244 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
***
51550309 TATAGAATTACCGTTT
66 TATAGAATTACCGCAA
** * * ****
51550325 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AG
1 TACCCTCGA-TTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGA-
* *****
51550388 TTTACAGAATTACTATTT
64 TTTATAGAATTACCGCAA
* * * ****
51550406 TACCCTCGATTTATAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTTTACCC-CTGA
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-GATTTACAAAATTACCAAAATACCCTC-GA
* * * ***
51550469 TTTACATAATTATCGTTT
64 TTTATAGAATTACCGCAA
* ***
51550487 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* ***
51550552 TATAGAATTACTGTTT
66 TATAGAATTACCGCAA
* * * * *
51550568 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
*
51550633 TGT-GAAATTACCGCAA
66 TATAG-AATTACCGCAA
*
51550649 TACCCTCAATTT
1 TACCCTCGATTT
51550661 GTAAAACTAC
Statistics
Matches: 285, Mismatches: 42, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
80 5 0.02
81 276 0.97
82 4 0.01
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TATAGAATTACCGCAA
Found at i:51551884 original size:25 final size:25
Alignment explanation
Indices: 51551855--51551902 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
51551845 TTATAATATG
* * *
51551855 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
51551880 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
51551903 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:51551971 original size:20 final size:20
Alignment explanation
Indices: 51551946--51552004 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
51551936 TAAATATGGT
51551946 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
51551966 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
51551986 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
51552005 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:51552082 original size:24 final size:24
Alignment explanation
Indices: 51552055--51552196 Score: 207
Period size: 24 Copynumber: 6.0 Consensus size: 24
51552045 GAGGAAGTGA
51552055 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
51552079 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATC
51552103 AAAAGGGCTTATGCCCCAGTTAT-
1 AAAAGGGCTTATGCCCCAGTTATC
*
51552126 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* * *
51552150 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATC
* *
51552174 AAAAGAGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCC-CCAGTTAT
51552197 ATGATAAAGC
Statistics
Matches: 110, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
23 27 0.25
24 83 0.75
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATC
Found at i:51552148 original size:47 final size:47
Alignment explanation
Indices: 51552055--51552196 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 47
51552045 GAGGAAGTGA
51552055 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTATC
*
51552103 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
* * * *
51552150 GAAAGGGCTTTTGCCCCAGTTATTAAAAGAGC-TAGGCCTCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTA-TAAAAGGGCTTATGCC-CCAGTTAT
51552197 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
47 48 0.55
48 39 0.45
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATC
Found at i:51552171 original size:71 final size:71
Alignment explanation
Indices: 51552055--51552197 Score: 216
Period size: 71 Copynumber: 2.0 Consensus size: 71
51552045 GAGGAAGTGA
* *
51552055 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCC-C
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGC-TAGGCCTC
51552119 CAGTTAT
65 CAGTTAT
** * *
51552126 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATTAAAAGAGCTAGGCCTCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGCTAGGCCTCC
51552191 AGTTAT
66 AGTTAT
51552197 A
1 A
51552198 TGATAAAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 5 0.08
71 60 0.92
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (71 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATCAAAAGAGCTAGGCCTCC
AGTTAT
Found at i:51552423 original size:31 final size:31
Alignment explanation
Indices: 51552388--51552482 Score: 181
Period size: 31 Copynumber: 3.1 Consensus size: 31
51552378 CGTTTACAGT
51552388 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51552419 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
51552450 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
51552481 AA
1 AA
51552483 TATGAAAAGG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 63 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:51558440 original size:10 final size:10
Alignment explanation
Indices: 51558405--51558459 Score: 51
Period size: 9 Copynumber: 5.4 Consensus size: 10
51558395 ACCTGCAATT
*
51558405 AACACATTAA
1 AACACATTTA
51558415 AACATGCATATTA
1 AACA--CAT-TTA
51558428 AACACATTTA
1 AACACATTTA
*
51558438 AACACA-TAA
1 AACACATTTA
51558447 AACACA-TTA
1 AACACATTTA
51558456 AACA
1 AACA
51558460 TTCAACTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
9 14 0.36
10 13 0.33
11 3 0.08
12 3 0.08
13 6 0.15
ACGTcount: A:0.56, C:0.20, G:0.02, T:0.22
Consensus pattern (10 bp):
AACACATTTA
Found at i:51558451 original size:9 final size:9
Alignment explanation
Indices: 51558424--51558459 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
51558414 AAACATGCAT
51558424 ATTAAACAC
1 ATTAAACAC
51558433 ATTTAAACAC
1 A-TTAAACAC
*
51558443 ATAAAACAC
1 ATTAAACAC
51558452 ATTAAACA
1 ATTAAACA
51558460 TTCAACTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.22
Consensus pattern (9 bp):
ATTAAACAC
Found at i:51558550 original size:16 final size:16
Alignment explanation
Indices: 51558526--51558580 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
51558516 CAGCAACTAG
*
51558526 ATAATTTAAAAGAAGC
1 ATAACTTAAAAGAAGC
*
51558542 ATAACTT-AAACAAG-
1 ATAACTTAAAAGAAGC
* *
51558556 TTTA-TTAAAAGAAGC
1 ATAACTTAAAAGAAGC
51558571 ATAACTTAAA
1 ATAACTTAAA
51558581 CAAGTTTATT
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
13 2 0.07
14 8 0.28
15 8 0.28
16 11 0.38
ACGTcount: A:0.55, C:0.09, G:0.09, T:0.27
Consensus pattern (16 bp):
ATAACTTAAAAGAAGC
Found at i:51558569 original size:29 final size:29
Alignment explanation
Indices: 51558531--51558592 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
51558521 ACTAGATAAT
51558531 TTAAAAGAAGCATAACTTAAACAAGTTTA
1 TTAAAAGAAGCATAACTTAAACAAGTTTA
51558560 TTAAAAGAAGCATAACTTAAACAAGTTTA
1 TTAAAAGAAGCATAACTTAAACAAGTTTA
51558589 TTAA
1 TTAA
51558593 CTCAATTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.29
Consensus pattern (29 bp):
TTAAAAGAAGCATAACTTAAACAAGTTTA
Found at i:51570239 original size:52 final size:50
Alignment explanation
Indices: 51570126--51570304 Score: 207
Period size: 52 Copynumber: 3.5 Consensus size: 50
51570116 ACGGATACCC
* * * * * *
51570126 AGTGGCCTGCACATAGTAACACCCTTGTAGTCAAAGCTACCTTCTTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGT-GACCAAGCTATCTTCTTCACAA
* * *
51570177 AGTGGTCTTCATATAGTACCACACTTGTGACCAAAGCTGTCTTTCTTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGACC-AAGCTATC-TTCTTCACAA
* *
51570229 AGTGGCCTTCACATAGTACCACAATTGTGACCAAGCTATC-TCTTCTCAA
1 AGTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAA
* *
51570278 AGTGGCCTTTACATAGTACCTCACTTG
1 AGTGGCCTTCACATAGTACCACACTTG
51570305 AGTCACTAGT
Statistics
Matches: 109, Mismatches: 17, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
49 32 0.29
50 2 0.02
51 36 0.33
52 39 0.36
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (50 bp):
AGTGGCCTTCACATAGTACCACACTTGTGACCAAGCTATCTTCTTCACAA
Found at i:51572691 original size:40 final size:39
Alignment explanation
Indices: 51572646--51572853 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
51572636 CGGAATACAA
*
51572646 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51572686 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51572726 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
51572766 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
51572806 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51572846 CCGGATAT
1 CCGGATAT
51572854 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51572786 original size:80 final size:80
Alignment explanation
Indices: 51572646--51572852 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
51572636 CGGAATACAA
* * *
51572646 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
51572710 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
51572726 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
51572790 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
51572806 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
51572853 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:51580741 original size:40 final size:39
Alignment explanation
Indices: 51580696--51580903 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 39
51580686 CGGAATACAA
*
51580696 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51580736 CCGGATAGAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* * *
51580776 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACAAATGCCTTCGGGTCTTAGC
* *** *
51580816 CCGGATGTGGTCACTAGCAC-AATGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACAAAT-GCCTTCGGGTCTTAGC
** * * *
51580856 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGC
1 CCGGATATAACCACT-GCACAAATGCCTTCGGGTCTTAGC
51580896 CCGGATAT
1 CCGGATAT
51580904 CATTCAATTG
Statistics
Matches: 141, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.03
40 134 0.95
41 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCACTGCACAAATGCCTTCGGGTCTTAGC
Found at i:51580836 original size:80 final size:80
Alignment explanation
Indices: 51580696--51580902 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
51580686 CGGAATACAA
* * *
51580696 CCGGATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTTGCACAAAT-
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCAC-AATG
*
51580760 GCCTTCGGGTATTAGC
65 GCCTTCGGGTATTAAC
* * **
51580776 CCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTGGTC-ACTAGCACAATG
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-AGAACGACTAGCACAATG
*
51580840 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTATTAAC
** * ** * *
51580856 CCGGATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGATA
1 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA
51580903 TCATTCAATT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 3 0.03
80 102 0.95
81 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTAGCACAATGG
CCTTCGGGTATTAAC
Found at i:51585857 original size:29 final size:29
Alignment explanation
Indices: 51585822--51585895 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51585812 GTTGTGAGAT
* *
51585822 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51585851 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51585880 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51585896 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51589740 original size:29 final size:29
Alignment explanation
Indices: 51589705--51589778 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51589695 GTTGTGAGAT
* *
51589705 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51589734 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51589763 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51589779 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51595587 original size:28 final size:27
Alignment explanation
Indices: 51595524--51595593 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
51595514 ATAGTGAGTC
51595524 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
51595551 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
51595579 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51595594 GTACAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:51602074 original size:40 final size:39
Alignment explanation
Indices: 51601966--51602169 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
51601956 TCTTCGGAAT
* *
51601966 TTAG-CCGGATATAACCACAAGCACAATTGCCTTC-GGTC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * * *
51602004 TTAACCCGGATTTGGTA-ACTTGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT--AACACTAGCACAAATGCCTTCGGGTC
* *
51602044 TTAGCCCGGATATAACAACTCGCACGAATGCCTTCGGGTC
1 TTAGCCCGGATATAAC-ACTAGCACAAATGCCTTCGGGTC
* *
51602084 TTAGCCCGGATATAATCACTA-CATAAATGCCTTC-GGAC
1 TTAGCCCGGATATAA-CACTAGCACAAATGCCTTCGGGTC
* * *
51602122 TTAGCCCGGATATATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
51602161 TTAGCCCGG
1 TTAGCCCGG
51602170 GTATCATTCG
Statistics
Matches: 141, Mismatches: 16, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
37 5 0.04
38 34 0.24
39 46 0.33
40 54 0.38
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TTAGCCCGGATATAACACTAGCACAAATGCCTTCGGGTC
Found at i:51604166 original size:29 final size:29
Alignment explanation
Indices: 51604131--51604204 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
51604121 GTTGTGAGAT
* *
51604131 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
51604160 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
51604189 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
51604205 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:51606719 original size:2 final size:2
Alignment explanation
Indices: 51606712--51606740 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
51606702 TCATGACATG
51606712 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
51606741 GACTAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51610740 original size:45 final size:45
Alignment explanation
Indices: 51610676--51610766 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
51610666 GAACTATGTG
* * *
51610676 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGAC
1 ATCTGAACTCATGGAGTTGTGGTATGAGTTCATGATATATACGAC
* *
51610721 ATCTGAGCTCATGGAGTTGTGGTATGAGTTCATGATGTATACGAC
1 ATCTGAACTCATGGAGTTGTGGTATGAGTTCATGATATATACGAC
51610766 A
1 A
51610767 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.35
Consensus pattern (45 bp):
ATCTGAACTCATGGAGTTGTGGTATGAGTTCATGATATATACGAC
Found at i:51611130 original size:2 final size:2
Alignment explanation
Indices: 51611123--51611150 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
51611113 TGGTAAGAAC
51611123 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
51611151 GAAGAATAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51621396 original size:51 final size:51
Alignment explanation
Indices: 51621320--51621424 Score: 192
Period size: 51 Copynumber: 2.1 Consensus size: 51
51621310 GGGTTGAGGA
*
51621320 ACGGGCGTGTGTGACCACACGGTCTACCCACACAGGCATGTCCCAAGCCAC
1 ACGGGCGTGTGTGACCACACGGTCTACCCACACAAGCATGTCCCAAGCCAC
*
51621371 ACGGGCGTGTGTGACCACATGGTCTACCCACACAAGCATGTCCCAAGCCAC
1 ACGGGCGTGTGTGACCACACGGTCTACCCACACAAGCATGTCCCAAGCCAC
51621422 ACG
1 ACG
51621425 AGCCTGTGAC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.25, C:0.36, G:0.25, T:0.14
Consensus pattern (51 bp):
ACGGGCGTGTGTGACCACACGGTCTACCCACACAAGCATGTCCCAAGCCAC
Found at i:51630691 original size:22 final size:22
Alignment explanation
Indices: 51630666--51630713 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
51630656 CAGCACAGGT
51630666 GTGTCCCTTAGACCACACGGGC
1 GTGTCCCTTAGACCACACGGGC
*
51630688 GTGTCCCTTGGACCACACGGGC
1 GTGTCCCTTAGACCACACGGGC
51630710 GTGT
1 GTGT
51630714 GAGCCCTGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (22 bp):
GTGTCCCTTAGACCACACGGGC
Found at i:51638367 original size:20 final size:20
Alignment explanation
Indices: 51638344--51638388 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51638334 AGGGACTAAA
* *
51638344 ATGAAAATTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
51638364 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
51638384 ATGAA
1 ATGAA
51638389 TACATGTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.11, T:0.38
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:51652998 original size:20 final size:20
Alignment explanation
Indices: 51652975--51653012 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51652965 CACATCCAAA
*
51652975 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
51652995 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
51653013 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:51660521 original size:40 final size:40
Alignment explanation
Indices: 51660466--51660675 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
51660456 AACATTGGAA
51660466 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51660506 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51660546 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51660586 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51660625 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51660666 CTATATCCGG
1 ATATATCCGG
51660676 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51668657 original size:40 final size:40
Alignment explanation
Indices: 51668602--51668771 Score: 225
Period size: 40 Copynumber: 4.2 Consensus size: 40
51668592 AACATTGGAA
51668602 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
51668642 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
51668682 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
51668721 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
51668762 CTATATCCGG
1 ATATATCCGG
51668772 TTAAATCCCG
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 109 0.98
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:51670726 original size:27 final size:28
Alignment explanation
Indices: 51670696--51670761 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
51670686 TTTAAAACCC
51670696 TAGGGGT-ATATCA-GTAATTTTGCTCTT
1 TAGGGGTAAT-TCAGGTAATTTTGCTCTT
*
51670723 TAGGGGTAATTTAGGTAATTTTGCTCTT
1 TAGGGGTAATTCAGGTAATTTTGCTCTT
51670751 TAGGGGTAATT
1 TAGGGGTAATT
51670762 TCGTGATCTA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
27 9 0.25
28 27 0.75
ACGTcount: A:0.23, C:0.08, G:0.26, T:0.44
Consensus pattern (28 bp):
TAGGGGTAATTCAGGTAATTTTGCTCTT
Found at i:51670744 original size:28 final size:28
Alignment explanation
Indices: 51670709--51670762 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
51670699 GGGTATATCA
51670709 GTAATTTTGCTCTTTAGGGGTAATTTAG
1 GTAATTTTGCTCTTTAGGGGTAATTTAG
51670737 GTAATTTTGCTCTTTAGGGGTAATTT
1 GTAATTTTGCTCTTTAGGGGTAATTT
51670763 CGTGATCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.07, G:0.24, T:0.48
Consensus pattern (28 bp):
GTAATTTTGCTCTTTAGGGGTAATTTAG
Found at i:51671715 original size:20 final size:20
Alignment explanation
Indices: 51671692--51671729 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
51671682 CACATCCAAG
*
51671692 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
51671712 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
51671730 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:51675607 original size:10 final size:10
Alignment explanation
Indices: 51675592--51675621 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
51675582 TGCCTATGTT
51675592 TCAAGATATA
1 TCAAGATATA
51675602 TCAAGATATA
1 TCAAGATATA
51675612 TCAATGATAT
1 TCAA-GATAT
51675622 GAGAAGATCG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (10 bp):
TCAAGATATA
Found at i:51677298 original size:41 final size:41
Alignment explanation
Indices: 51677253--51677370 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51677243 TGAAAGATAA
51677253 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51677294 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51677324 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51677365 ATGTAG
1 ATGTAG
51677371 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51677309 original size:71 final size:71
Alignment explanation
Indices: 51677221--51677384 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51677211 GAGATGTATC
51677221 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51677286 AGGACA
66 AGGACA
51677292 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51677357 AGGACA
66 AGGACA
51677363 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51677385 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51684878 original size:41 final size:41
Alignment explanation
Indices: 51684833--51684950 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
51684823 TGAAAGATAA
51684833 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
51684874 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51684904 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
51684945 ATGTAG
1 ATGTAG
51684951 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:51684889 original size:71 final size:71
Alignment explanation
Indices: 51684801--51684964 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
51684791 GAGATGTATC
51684801 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51684866 AGGACA
66 AGGACA
51684872 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
51684937 AGGACA
66 AGGACA
51684943 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
51684965 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:51699921 original size:46 final size:46
Alignment explanation
Indices: 51699871--51700043 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
51699861 TGGTTGAGCA
51699871 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * * *
51699917 TCCGAATTCGTTGAGTTAAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
51699962 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
51700010 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
51700044 GGGGCGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.57
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:51700032 original size:93 final size:93
Alignment explanation
Indices: 51699868--51700038 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
51699858 GGATGGTTGA
* * *
51699868 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAATTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
51699933 TAAGTCCGAGTTCGTGAAATGTAACTAG
66 TAAGTCCGAGTTCGTGAAATGTAACTAG
*
51699961 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
51700026 TGAGTCCGAGTTC
66 TAAGTCCGAGTTC
51700039 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TAAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:51705555 original size:24 final size:24
Alignment explanation
Indices: 51705510--51705555 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
51705500 GCTAACTGAG
* *
51705510 TGCCGATTTTGTTTCTAGCTTTGC
1 TGCCGATTTTCTTTCTAACTTTGC
51705534 TGCCGA-TTTCTTTCTCAACTTT
1 TGCCGATTTTCTTTCT-AACTTT
51705556 TCTGGTTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.11, C:0.24, G:0.15, T:0.50
Consensus pattern (24 bp):
TGCCGATTTTCTTTCTAACTTTGC
Found at i:51708576 original size:27 final size:27
Alignment explanation
Indices: 51708512--51708564 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
51708502 GACCCCAATT
* *
51708512 TGTAAAATCACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAG
51708539 TGTAAAATGACCGAAATACCCCTGTA
1 TGTAAAATGACCGAAATACCCCTGTA
51708565 TGATAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTGTAG
Found at i:51709723 original size:25 final size:25
Alignment explanation
Indices: 51709695--51709742 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
51709685 TTGTATTTCA
51709695 TGAGGT-TGTTTTCAAATAAGTGTTT
1 TGAGGTATGTTTTCAAA-AAGTGTTT
* *
51709720 TGAGGTATTTTTTCGAAAAGTGT
1 TGAGGTATGTTTTCAAAAAGTGT
51709743 GGCACACCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 12 0.60
26 8 0.40
ACGTcount: A:0.25, C:0.04, G:0.25, T:0.46
Consensus pattern (25 bp):
TGAGGTATGTTTTCAAAAAGTGTTT
Done.