Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 188 of 328
Found at i:56082864 original size:54 final size:54
Alignment explanation
Indices: 56082762--56082864 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
56082752 TAAAATTACC
* * *
56082762 AAATATCCTTGAATTGTAAAATTATCGAAATACCCTTGTAATGAAAAATTTCTG
1 AAATACCCTTGAAGTGTAAAATTATCGAAATACCCTTGTAAGGAAAAATTTCTG
* *
56082816 AAATACCCTTGTAGTGTAAAATTATCGAAATACTCC-TGTAAGGTAAAAT
1 AAATACCCTTGAAGTGTAAAATTATCGAAATAC-CCTTGTAAGGAAAAAT
56082865 GATTGTTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 41 0.95
55 2 0.05
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.33
Consensus pattern (54 bp):
AAATACCCTTGAAGTGTAAAATTATCGAAATACCCTTGTAAGGAAAAATTTCTG
Found at i:56084245 original size:78 final size:78
Alignment explanation
Indices: 56084116--56084271 Score: 258
Period size: 78 Copynumber: 2.0 Consensus size: 78
56084106 GTTTCGGAAC
*
56084116 TTAGTTTTTTTTGACATCACGTTTTCGTAAATCAATTACTTCTAAAATTAGCTTCCACAACTTAA
1 TTAGTTGTTTTTGACATCACGTTTTCGTAAATCAATTACTTCTAAAATTAGCTTCCACAACTTAA
*
56084181 TAGAAATTTTGGG
66 AAGAAATTTTGGG
* **
56084194 TTAGTTGTTTTTGACATCACGTTTTCGTAAATCAATTACTTTTAAAATTAGCTTCCGTAACTTAA
1 TTAGTTGTTTTTGACATCACGTTTTCGTAAATCAATTACTTCTAAAATTAGCTTCCACAACTTAA
*
56084259 AATAAATTTTGGG
66 AAGAAATTTTGGG
56084272 AATAGAATTA
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 72 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (78 bp):
TTAGTTGTTTTTGACATCACGTTTTCGTAAATCAATTACTTCTAAAATTAGCTTCCACAACTTAA
AAGAAATTTTGGG
Found at i:56085937 original size:40 final size:40
Alignment explanation
Indices: 56085887--56086071 Score: 259
Period size: 40 Copynumber: 4.7 Consensus size: 40
56085877 ATAACCACAA
* *
56085887 CACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCG
1 CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCG
* *
56085927 CACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTCG
1 CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCG
56085967 CACAAATGCCTTCGGGTCTTAA-CCGGATATAGCAACT-G
1 CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCG
* *
56086005 CACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTAG
1 CACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTCG
* * *
56086045 CATAAATGCCTTCGGGGCTTAGCCCGG
1 CACAAATGCCTTCGGGTCTTAACCCGG
56086072 GTATCATTCA
Statistics
Matches: 132, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
38 23 0.17
39 25 0.19
40 84 0.64
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCG
Found at i:56086014 original size:78 final size:80
Alignment explanation
Indices: 56085871--56086071 Score: 284
Period size: 78 Copynumber: 2.5 Consensus size: 80
56085861 CGGAATTTAG
* * * *
56085871 CCGGATATAACCAC-AACACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATG
*
56085935 CCTTCGGGTCTTAGC
66 CCTTCGGGTCTTAAC
*
56085950 CCGGATATAA-CAACTCGCACAAATGCCTTCGGGTCTTAA-CCGGATATAGCAACT-GCACAAAT
1 CCGGATATAATC-ACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAAT
56086012 GCCTTCGGGTCTTAAC
65 GCCTTCGGGTCTTAAC
* * *
56086028 CCGGATATAATCACTAGCATAAATGCCTTCGGGGCTTAGCCCGG
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGG
56086072 GTATCATTCA
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
78 57 0.52
79 31 0.28
80 21 0.19
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (80 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATG
CCTTCGGGTCTTAAC
Found at i:56090445 original size:40 final size:40
Alignment explanation
Indices: 56090362--56090581 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
56090352 ACCCAAGTAT
** * *
56090362 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * *
56090400 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * *
56090440 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* *
56090480 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAAGC
* * *
56090520 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
*
56090560 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
56090582 CATTCGAATA
Statistics
Matches: 152, Mismatches: 25, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 123 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
Found at i:56090493 original size:80 final size:79
Alignment explanation
Indices: 56090362--56090581 Score: 284
Period size: 80 Copynumber: 2.8 Consensus size: 79
56090352 ACCCAAGTAT
* * * * *
56090362 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
56090426 -ACTAGCATAAATGC
65 AACTAGCACAAATGC
*
56090440 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
56090505 AACTCGCACAAATGC
65 AACTAGCACAAATGC
* * *
56090520 CTTC-GGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
56090582 CATTCGAATA
Statistics
Matches: 125, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
78 12 0.10
79 21 0.17
80 92 0.74
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCACAAATGC
Found at i:56094883 original size:39 final size:39
Alignment explanation
Indices: 56094732--56094925 Score: 253
Period size: 40 Copynumber: 4.9 Consensus size: 39
56094722 TGTTCAAACA
* * * * * *
56094732 CCTTCGGGACATAGCCCGGTTATGATAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
*
56094772 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCACAACTCGCACAATTG
* * * *
56094812 CCTTCGGAGTTTATCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGG-GCTTAGCCCGGATATCACAACTCGCACAATTG
56094852 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
*
56094891 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCACAACTCGCACA
56094926 TTCATACACA
Statistics
Matches: 137, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 62 0.45
40 74 0.54
41 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCACAACTCGCACAATTG
Found at i:56101803 original size:40 final size:40
Alignment explanation
Indices: 56101720--56101939 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
56101710 ACCCAAGTAT
** * *
56101720 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * *
56101758 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* * *
56101798 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
* *
56101838 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAAGC
* * * * *
56101878 CTTCGGATTTTAGTCCGGATATAGTCACTAGCATAAAAGT
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
*
56101918 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
56101940 CATTCGAATA
Statistics
Matches: 149, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 16 0.11
40 120 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAAGC
Found at i:56101851 original size:80 final size:79
Alignment explanation
Indices: 56101720--56101939 Score: 275
Period size: 80 Copynumber: 2.8 Consensus size: 79
56101710 ACCCAAGTAT
* * * *
56101720 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGATTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
56101784 -ACTAGCATAAATGC
65 AACTAGCACAAATGC
* *
56101798 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCGGGATTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
56101863 AACTCGCACAAATGC
65 AACTAGCACAAATGC
* * * *
56101878 CTTC-GGATTTTAGTCCGGATATAGTCACTAGCATAAAAGTCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGA-TTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
56101940 CATTCGAATA
Statistics
Matches: 123, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
78 12 0.10
79 21 0.17
80 90 0.73
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (79 bp):
CTTCGGGATTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCA
ACTAGCACAAATGC
Found at i:56104594 original size:34 final size:33
Alignment explanation
Indices: 56104540--56104610 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 33
56104530 GTGATAGTCC
56104540 AGTATCAGTAGGGCCATAGCCCATTACAGTAAT
1 AGTATCAGTAGGGCCATAGCCCATTACAGTAAT
* * **
56104573 AGTATCAGTGTGGGCCTTAGCCCATTATTGTAAT
1 AGTATCAGT-AGGGCCATAGCCCATTACAGTAAT
56104607 AGTA
1 AGTA
56104611 ACAGAAATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
33 9 0.27
34 24 0.73
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (33 bp):
AGTATCAGTAGGGCCATAGCCCATTACAGTAAT
Found at i:56106292 original size:12 final size:13
Alignment explanation
Indices: 56106271--56106303 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
56106261 CCTTGATCCA
56106271 CTCCTC-AAATCT
1 CTCCTCTAAATCT
56106283 CTCC-CTAAATCT
1 CTCCTCTAAATCT
56106295 CTCCTCTAA
1 CTCCTCTAA
56106304 TCCCTCAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.05
12 14 0.74
13 4 0.21
ACGTcount: A:0.24, C:0.42, G:0.00, T:0.33
Consensus pattern (13 bp):
CTCCTCTAAATCT
Found at i:56110060 original size:43 final size:43
Alignment explanation
Indices: 56109993--56110159 Score: 194
Period size: 43 Copynumber: 3.9 Consensus size: 43
56109983 AGCTCGTACA
* * * * *
56109993 ATGCC-ATATCCCAGATATGTTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * * * *
56110035 ATGCCACTGTCCCAGATAGGGTCTTACACGAAATCATATAACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
*
56110078 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
*
56110121 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
56110160 CTCGGTAATC
Statistics
Matches: 105, Mismatches: 17, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
42 6 0.06
43 99 0.94
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:56113603 original size:40 final size:40
Alignment explanation
Indices: 56113518--56113668 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
56113508 AATTGAATGA
* * * **
56113518 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTT
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
56113558 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
56113599 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
56113638 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
56113669 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 77 0.85
41 5 0.05
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:56113682 original size:40 final size:40
Alignment explanation
Indices: 56113558--56113684 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
56113548 CTGGAAATTT
* * * * *
56113558 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
56113598 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
56113638 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
56113678 TATCCGG
1 TATCCGG
56113685 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:56117745 original size:40 final size:40
Alignment explanation
Indices: 56117700--56117866 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
56117690 CGGAATATAA
56117700 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
56117740 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
56117780 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
56117820 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
56117859 CCGGATAT
1 CCGGATAT
56117867 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:56117850 original size:80 final size:79
Alignment explanation
Indices: 56117716--56117866 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
56117706 ATAATCACGT
*
56117716 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
56117781 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
56117796 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
56117859 CCGGATAT
64 CCGGATAT
56117867 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:56125737 original size:40 final size:40
Alignment explanation
Indices: 56125692--56125858 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
56125682 CGGAATATAA
56125692 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
56125732 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
56125772 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
56125812 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
56125851 CCGGATAT
1 CCGGATAT
56125859 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:56125842 original size:80 final size:79
Alignment explanation
Indices: 56125708--56125858 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
56125698 ATAATCACGT
*
56125708 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
56125773 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
56125788 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
56125851 CCGGATAT
64 CCGGATAT
56125859 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:56129268 original size:46 final size:46
Alignment explanation
Indices: 56129218--56129393 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
56129208 ATGGTTGGCA
56129218 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
56129264 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
56129309 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
56129357 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
56129394 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:56129373 original size:93 final size:93
Alignment explanation
Indices: 56129214--56129385 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
56129204 TAGGATGGTT
* *
56129214 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
56129279 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
56129307 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
56129372 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
56129386 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:56131318 original size:39 final size:39
Alignment explanation
Indices: 56131264--56131426 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
56131254 TGTGAATGAA
56131264 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
56131303 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
56131342 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
56131381 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
56131421 TGTGCG
1 TGTGCG
56131427 GGTTACCATA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:56131442 original size:40 final size:39
Alignment explanation
Indices: 56131264--56131456 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
56131254 TGTGAATGAA
* *
56131264 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* *
56131303 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
*
56131342 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
56131381 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGGCAAT
* ** * *
56131421 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAG-CCCGAAGG
56131457 TGTTTTGAAC
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:56139426 original size:38 final size:39
Alignment explanation
Indices: 56139347--56139508 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
56139337 TGTGAATGAA
56139347 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
56139386 TGTGCGAATTGTGATATCCGGGCTAAG-CCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
** *
56139424 TGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
56139463 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
56139503 TGTGCG
1 TGTGCG
56139509 GGTTACCATA
Statistics
Matches: 114, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 35 0.31
39 62 0.54
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:56139475 original size:77 final size:78
Alignment explanation
Indices: 56139358--56139508 Score: 259
Period size: 77 Copynumber: 1.9 Consensus size: 78
56139348 GTGCGAATTG
56139358 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCGAAGGCA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
56139422 ATTGTGCGAGCTA
66 ATTGTGCGAGCTA
* *
56139435 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGC
*
56139500 ATTTGTGCG
65 AATTGTGCG
56139509 GGTTACCATA
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
77 53 0.77
79 16 0.23
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.24
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCA
ATTGTGCGAGCTA
Found at i:56139524 original size:40 final size:40
Alignment explanation
Indices: 56139347--56139538 Score: 239
Period size: 39 Copynumber: 4.9 Consensus size: 40
56139337 TGTGAATGAA
* *
56139347 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* *
56139386 TGTGCGAATTGTGATATCCGGGCTAAG--CCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
*
56139424 TGTGCGAGCTATGATATCCGGGCTAAG-CCCGAAGGCAAT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* * *
56139463 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
* ** * *
56139503 TGTGCGGGTTACCATAACCGGGCTATGTCCCGAAGG
1 TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGG
56139539 TGTTTTGAAC
Statistics
Matches: 137, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 35 0.26
39 62 0.45
40 40 0.29
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (40 bp):
TGTGCGAGTTATGATATCCGGGCTAAGTCCCGAAGGCAAT
Found at i:56143271 original size:21 final size:21
Alignment explanation
Indices: 56143246--56143285 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
56143236 AGTAACCCTA
* *
56143246 TATTATAATGGTTTTATATTT
1 TATTATAAAGGTTATATATTT
56143267 TATTATAAAGGTTATATAT
1 TATTATAAAGGTTATATAT
56143286 GTAAATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
TATTATAAAGGTTATATATTT
Found at i:56145632 original size:20 final size:21
Alignment explanation
Indices: 56145595--56145633 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
56145585 ATATAATTGA
*
56145595 TTAAATGATATTTGTTTGTGG
1 TTAAATGATATATGTTTGTGG
56145616 TTAAATGA-ATATGTTTGT
1 TTAAATGATATATGTTTGT
56145634 TTATGTGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (21 bp):
TTAAATGATATATGTTTGTGG
Found at i:56147799 original size:17 final size:17
Alignment explanation
Indices: 56147777--56147829 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 17
56147767 ATGTTAGTTC
56147777 AAACATATGATAAATAA
1 AAACATATGATAAATAA
* **
56147794 AAACAT-T--T-AGTTC
1 AAACATATGATAAATAA
56147807 AAACATATGATAAATAA
1 AAACATATGATAAATAA
56147824 AAACAT
1 AAACAT
56147830 TTACCTTACA
Statistics
Matches: 26, Mismatches: 6, Indels: 8
0.65 0.15 0.20
Matches are distributed among these distances:
13 8 0.31
14 2 0.08
16 2 0.08
17 14 0.54
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.26
Consensus pattern (17 bp):
AAACATATGATAAATAA
Found at i:56147804 original size:30 final size:30
Alignment explanation
Indices: 56147770--56147832 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
56147760 ATGCGATATG
56147770 TTAGTTCAAACATATGATAAATAAAAACAT
1 TTAGTTCAAACATATGATAAATAAAAACAT
56147800 TTAGTTCAAACATATGATAAATAAAAACAT
1 TTAGTTCAAACATATGATAAATAAAAACAT
56147830 TTA
1 TTA
56147833 CCTTACAAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (30 bp):
TTAGTTCAAACATATGATAAATAAAAACAT
Found at i:56149513 original size:11 final size:11
Alignment explanation
Indices: 56149497--56149521 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
56149487 AAAAAAATCT
56149497 TTTATTTAATA
1 TTTATTTAATA
56149508 TTTATTTAATA
1 TTTATTTAATA
56149519 TTT
1 TTT
56149522 GAATTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTATTTAATA
Found at i:56154193 original size:6 final size:6
Alignment explanation
Indices: 56154181--56154218 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
56154171 TGATGATGAT
* *
56154181 GACGAG GAGGAG GAGGAG GACGAG GACGAG GACGAG GA
1 GACGAG GACGAG GACGAG GACGAG GACGAG GACGAG GA
56154219 GAGATGGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.55, T:0.00
Consensus pattern (6 bp):
GACGAG
Found at i:56156097 original size:142 final size:142
Alignment explanation
Indices: 56155837--56158060 Score: 1641
Period size: 143 Copynumber: 15.6 Consensus size: 142
56155827 TGATGGTAAT
* * * * ** * * *
56155837 CTCTTAAAAATTTATATTTTATCTTTAATT-TCATAATTGATTTTACCTTAAAATTCGAGTTTCC
1 CTCTTAAAAATTTATACTTTATCTTTGATTCT-GTAA-CGATTTCGCCTCAAAATTCGAATTTCA
* * * * * *
56155901 ATATTTAAAGATAAAATTGAAAAAAAAATCATAAGATAAAAGAACTTT-ACTATGCATCAAATGA
64 ATATTTAAAAATGAAATT--AAAAAGAATCATAAGACAAGAGAA-TTTCACTATGCATCACATGA
**
56155965 TAAATTTTAATTTTAAC
126 TAAATTTCCATTTTAAC
* * * * * * *
56155982 ATCTTACAAATTTATACTTTAT-TTCTGATTTTGTAACGGTTTCGCCTCAATACTGGAATTTCAA
1 CTCTTAAAAATTTATACTTTATCTT-TGATTCTGTAACGATTTCGCCTCAAAATTCGAATTTCAA
** * * ***
56156046 TATTTAAAAAT-AAATTTAAAAAGAATCATAAGGTAAGAGAATTTCATTATGCATCAAATGGCCA
65 TATTTAAAAATGAAA-TTAAAAAGAATCATAAGACAAGAGAATTTCACTATGCATCACATGATAA
*
56156110 ATTTCCACTTTAAC
129 ATTTCCATTTTAAC
* * * * * * *
56156124 CTCTTAAAAGTTTATATTTTATCTTTGATTTTGTAACAAATTGCACCTTAAAATTCGAATTTCAA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-GATTTCGCCTCAAAATTCGAATTTCAA
* * * * *
56156189 TATTTAAAAATAAAATTGAAAAGAAAATCATAAAAAAAAAAAGAAAAAAGAACTTCACTATGCAT
65 TATTTAAAAATGAAATT-AAAA-AGAATCAT---------AAGACAAGAGAATTTCACTATGCAT
* *
56156254 CACATGAT-AATTTACATTTCAAC
119 CACATGATAAATTTCCATTTTAAC
* * *
56156277 CTCTTAAAAATTTATATTTTATCTTTGATTCCGTAATGGACTTT-GCCTCAAAATTC-AAGTTTC
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-CGA-TTTCGCCTCAAAATTCGAA-TTTC
* * * **
56156340 AATATTTAAAAATGAAATTAAAAAGAATCATAAGACACGAGAACTTCGCTATGCATCACATTTTA
63 AATATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAATTTCACTATGCATCACATGATA
56156405 AATTTCCATTTTAAC
128 AATTTCCATTTTAAC
* * * * *
56156420 CTCTTAAAAATTTATACTTTATCTTTAATTATGTAATCGATTTCTCCT-AGAAATTCGTATTTTA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-CGATTTCGCCTCA-AAATTCGAATTTCA
* * * * *
56156484 ATATTTAAAATTGAAATTAAAAA-AATCTTAAAACACGAGAAGTTT-GCTATGCATCACATGATA
64 ATATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAA-TTTCACTATGCATCACATGATA
56156547 AATTTCCATTTTAAC
128 AATTTCCATTTTAAC
* * * * * *
56156562 CTCTTAAAAATTCAAACTATATCTTTGATTCTGTAACAGACTTCGACTCAAAATTCGAGTTTCAA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-GATTTCGCCTCAAAATTCGAATTTCAA
* * * *
56156627 CATTTAAAAATGAAATTAAAAAGATTCATAAGACATGAGAACTTT-GCTATGCA-CTACATTG-T
65 TATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAA-TTTCACTATGCATC-ACA-TGAT
* *
56156689 AAATTACTA-TTTAAC
127 AAATTTCCATTTTAAC
* * * * * * *
56156704 CTCTTAAAAATTTATACTTTATCTTTTATTTTGTACCCGAGTT-GCCTTGAAACTT-GAATTTTA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTA-ACGATTTCGCC-TCAAAATTCGAATTTCA
* ** * *
56156767 ATATTTAAAAAT-AAATTAAAAA-AGTGCA-AA-ACACA-ATTATTTTACTATGCATCACATGGT
64 ATATTTAAAAATGAAATTAAAAAGAAT-CATAAGACA-AGAGAATTTCACTATGCATCACATGAT
56156827 AAATTTCC-TTATTAAC
127 AAATTTCCATT-TTAAC
* * * * ** * *
56156843 CTCTTAAAAGTTTATACTTTATCTATAATT-TCGTAACGGACTTCAACTCAAGATTCGAGTTTCA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCT-GTAAC-GATTTCGCCTCAAAATTCGAATTTCA
* * * * * *
56156907 ATATTTAAAAATGAAATTCAAAAGAATCATAAGACATGACAATTTCGCTATGCATTACATGGTAA
64 ATATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAATTTCACTATGCATCACATGATAA
56156972 ATTTCCATTTTAAC
129 ATTTCCATTTTAAC
* * * * * ** * *
56156986 CTCTTAAAAATTCAAACTTTATCTTTGATTCTATAATGGACTTCATCTCAAAATTCGAGTTTTAA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-CGATTTCGCCTCAAAATTCGAATTTCAA
* * *
56157051 CATTTAAAAATGAAATTAAAAAG-ATACATAAGACACGAGAACTTT-GCTATGCATCACATTG-T
65 TATTTAAAAATGAAATTAAAAAGAAT-CATAAGACAAGAGAA-TTTCACTATGCATCACA-TGAT
* * *
56157113 AAAATTCTACTTTAAC
127 AAATTTCCATTTTAAC
* * ** * *
56157129 CTTTTAAAAATTTATACTTTATCTGTT-ATTCTGTAACCGAGTT-GCCTTGAAACTCGAATTTTA
1 CTCTTAAAAATTTATACTTTATCT-TTGATTCTGTAA-CGATTTCGCCTCAAAATTCGAATTTCA
** * * * * *
56157192 ATATTTAAAAAT-AAATTTTAAAAA-AGCGCAAAACACAATTAG--TTT-TCTATACATCACATG
64 ATATTTAAAAATGAAA--TTAAAAAGA-ATCATAAGACAA-GAGAATTTCACTATGCATCACATG
* *
56157252 GTAAATTTCCTTTTTAAC
125 ATAAATTTCCATTTTAAC
* * * * * *
56157270 CTCTTAAAAATTTATACTTTATCTATAGTTTC-GTAACAAACTTCGACTCAAAATTCGAGTTTCA
1 CTCTTAAAAATTTATACTTTATCT-TTGATTCTGTAAC-GATTTCGCCTCAAAATTCGAATTTCA
* * * *
56157334 ATATTTAAAACTGAAATTAAAAAGAATCATAGGACACGAGAACTTCACTATGCATCACATGATAA
64 ATATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAATTTCACTATGCATCACATGATAA
56157399 ATTTCCATTTTAAC
129 ATTTCCATTTTAAC
* * * * * *
56157413 CTCTTAAAAAATTATACTTTACCTTTAATTCTGTAACTGACTTGGCCTCGAAATTCGAATTAT-A
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-GATTTCGCCTCAAAATTCGAATT-TCA
* * * * *
56157477 ATATTTAAAAATGAAATTAAAAAAAATCATAAAAGACGAGAAGTTT-TCTATGCATCACATGATA
64 ATATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAA-TTTCACTATGCATCACATGATA
*
56157541 AATTTCCTTTTTAAC
128 AATTTCCATTTTAAC
* * * * * * *
56157556 CTTTTAAAAGTTTATACTTTATCTTTGATTCTGAAACCAACGTT-GCCT-AGAAATTCAAATTTT
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-CGA-TTTCGCCTCA-AAATTCGAATTTC
* * * * * *
56157619 AATATTTAAAAATGAAATTATAAAA-AATCATAAAACACGATAAGTTT-TCTATGCATTACATGG
63 AATATTTAAAAATGAAATTA-AAAAGAATCATAAGACAAGAGAA-TTTCACTATGCATCACATGA
*
56157682 TAAATTTCAATTTTAAC
126 TAAATTTCCATTTTAAC
* ** *
56157699 CACTCCAAAATTTATACTTTATCTTTAATTGC-GTAACGGAGTTT-G---C------C-AATTTC
1 CTCTTAAAAATTTATACTTTATCTTTGATT-CTGTAAC-GA-TTTCGCCTCAAAATTCGAATTTC
* * * * * **
56157752 AATATTTAAAAAT-ATATTAAAAACAATCATAAGACACGAGAACTTCGCTATATATCACATTG-T
63 AATATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAATTTCACTATGCATCACA-TGAT
* *
56157815 AAATTTTCATTTTAAT
127 AAATTTCCATTTTAAC
* * *
56157831 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAATTGACTTT-GCCTCGACATTCGAA-TTCT
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-CGA-TTTCGCCTCAAAATTCGAATTTC-
* * * * *
56157894 AATATCTAAAAATGAAATT-AAAAGAAATCATAAAACACGACAAGTTT-GCTATGCATCACATGA
63 AATATTTAAAAATGAAATTAAAAAG-AATCATAAGACAAGAGAA-TTTCACTATGCATCACATGA
* *
56157957 TAAATTTCCATGTAAAC
126 TAAATTTCCATTTTAAC
* * * * * *
56157974 CTCTTAAAAATTTATATTTTATCTTTGATTCTGTAACTGACATT-GCCTCGAATTTCAAATTTTA
1 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-GA-TTTCGCCTCAAAATTCGAATTTCA
* *
56158038 ACATTTAAAAATAAAATTAAAAA
64 ATATTTAAAAATGAAATTAAAAA
56158061 AAGCGCAAAA
Statistics
Matches: 1679, Mismatches: 296, Indels: 209
0.77 0.14 0.10
Matches are distributed among these distances:
131 7 0.00
132 80 0.05
133 20 0.01
134 1 0.00
135 1 0.00
137 5 0.00
138 25 0.01
139 49 0.03
140 36 0.02
141 112 0.07
142 360 0.21
143 758 0.45
144 73 0.04
145 33 0.02
146 1 0.00
151 7 0.00
152 6 0.00
153 78 0.05
154 27 0.02
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.37
Consensus pattern (142 bp):
CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACGATTTCGCCTCAAAATTCGAATTTCAAT
ATTTAAAAATGAAATTAAAAAGAATCATAAGACAAGAGAATTTCACTATGCATCACATGATAAAT
TTCCATTTTAAC
Found at i:56157387 original size:427 final size:427
Alignment explanation
Indices: 56155950--56158093 Score: 2053
Period size: 427 Copynumber: 5.0 Consensus size: 427
56155940 AAGAACTTTA
* * ** * * * * * *
56155950 CTATGCATCAAATGATAAATTTTAATTTTAACATCTTACAAATTTATACTTTATTTCTGATTTTG
1 CTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTTCG
* * * * *
56156015 TAACGG-TTTCGCCTCAATACTGGAATTTCAATATTTAAAAAT-AAATTTAAAAAGAATCATAAG
66 TAACGGACTTCGACTCAAAATTCG-ATTTCAATATTTAAAAATGAAA-TTAAAAAGAATCATAAG
** * * ** * *** * * * * *
56156078 GTAAGAGAATTTCATTATGCATCAAATGGCCAATTTCCACTTTAACCTCTTAAAAGTTTATATTT
129 ACACGAGAACTTCGCTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTCAAACTT
* ** * * * * * *
56156143 TATCTTTGATTTTGTAACAAATTGCACCTTAAAATTCGAATTTCAATATTTAAAAATAAAATTGA
194 TATCTTTGATTCTGTAATGACTT-CACCTCAAAATTCGAATTTTAACATTTAAAAATGAAATTAA
* * ** *
56156208 AAAGAAAATCATAAAAAAAAAAAGAAAAAAGAACTTCACTATGCATCACATGAT-AATTTAC-AT
258 AAAG-AAATCAT----AAAACACG-----AGAACTTTGCTATGCATCACATGATAAAATTACTAT
* * ** * ** * *
56156271 TTCAACCTCTTAAAAATTTATATTTTATCTTTGATTCCGTAATGGACTTTGCCTCAAAATTCAAG
313 TT-AACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAACTCAAA
* * * ** * * ** * **
56156336 TTTCAATATTTAAAAATGAAA-TTAAAAAGAATCATAAGACACGAGAACTTCG
377 TTTTAATATTTAAAAAT-AAATTTTAAAA-AAGCGCAAAACACAATTAGTTTT
** *
56156388 CTATGCATCACATTTTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTAT-
1 CTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATT-TC
* ** * * *
56156452 GTAATC-GATTTCTCCT-AGAAATTCGTATTTTAATATTTAAAATTGAAATTAAAAA-AATCTTA
65 GTAA-CGGACTTCGACTCA-AAATTCG-ATTTCAATATTTAAAAATGAAATTAAAAAGAATCATA
* * *
56156514 AAACACGAGAAGTTTGCTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTCAAAC
127 AGACACGAGAACTTCGCTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTCAAAC
* * * *
56156579 TATATCTTTGATTCTGTAACAGACTTCGA-CTCAAAATTCGAGTTTCAACATTTAAAAATGAAAT
192 TTTATCTTTGATTCTGTAA-TGACTTC-ACCTCAAAATTCGAATTTTAACATTTAAAAATGAAAT
* * *
56156643 TAAAAAG-ATTCATAAGACATGAGAACTTTGCTATGCA-CTACATTG-T-AAATTACTATTTAAC
255 TAAAAAGAAATCATAAAACACGAGAACTTTGCTATGCATC-ACA-TGATAAAATTACTATTTAAC
* * * **
56156704 CTCTTAAAAATTTATACTTTATCTTTTATTTTGTACCCGA-GTTGCCTTGAAACTTGAATTTTAA
318 CTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAACTCAAATTTTAA
*
56156768 TATTTAAAAATAAA--TTAAAAAAGTGCAAAACACAATTA-TTTT
383 TATTTAAAAATAAATTTTAAAAAAGCGCAAAACACAATTAGTTTT
*
56156810 ACTATGCATCACATGGTAAATTTCC-TTATTAACCTCTTAAAAGTTTATACTTTATCTATAATTT
1 -CTATGCATCACATGGTAAATTTCCATT-TTAACCTCTTAAAAATTTATACTTTATCTATAATTT
* * *
56156874 CGTAACGGACTTCAACTCAAGATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAGAATCATAA
64 CGTAACGGACTTCGACTCAAAATTCGA-TTTCAATATTTAAAAATGAAATTAAAAAGAATCATAA
* * * * *
56156939 GACATGACAATTTCGCTATGCATTACATGGTAAATTTCCATTTTAACCTCTTAAAAATTCAAACT
128 GACACGAGAACTTCGCTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTCAAACT
* * *
56157004 TTATCTTTGATTCTATAATGGACTTCATCTCAAAATTCGAGTTTTAACATTTAAAAATGAAATTA
193 TTATCTTTGATTCTGTAAT-GACTTCACCTCAAAATTCGAATTTTAACATTTAAAAATGAAATTA
* *
56157069 AAAAGATA-CATAAGACACGAGAACTTTGCTATGCATCACATTG-TAAAATT-CTACTTTAACCT
257 AAAAGAAATCATAAAACACGAGAACTTTGCTATGCATCACA-TGATAAAATTACTA-TTTAACCT
* *
56157131 TTTAAAAATTTATACTTTATCTGTT-ATTCTGTAACCGA-GTTGCCTTGAAACTCGAATTTTAAT
320 CTTAAAAATTTATACTTTATCT-TTGATTCTGTAACCGACGTTGCCTTGAAACTCAAATTTTAAT
56157194 ATTTAAAAATAAATTTTAAAAAAGCGCAAAACACAATTAGTTTT
384 ATTTAAAAATAAATTTTAAAAAAGCGCAAAACACAATTAGTTTT
* * *
56157238 CTATACATCACATGGTAAATTTCCTTTTTAACCTCTTAAAAATTTATACTTTATCTATAGTTTCG
1 CTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTTCG
** * *
56157303 TAACAAACTTCGACTCAAAATTCGAGTTTCAATATTTAAAACTGAAATTAAAAAGAATCATAGGA
66 TAACGGACTTCGACTCAAAATTCGA-TTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGA
* *
56157368 CACGAGAACTTCACTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAAATT-ATACTT
130 CACGAGAACTTCGCTATGCATCACATGATAAATTTCCATTTTAACCTCTT-AAAAATTCAAACTT
* * ** * * *
56157432 TACCTTTAATTCTGTAACTGACTTGGCCTCGAAATTCGAATTATAATATTTAAAAATGAAATTAA
194 TATCTTTGATTCTGTAA-TGACTTCACCTCAAAATTCGAATTTTAACATTTAAAAATGAAATTAA
* * * * * * *
56157497 AAA-AAATCATAAAAGACGAGAAGTTTTCTATGCATCACATGATAAATTTCCTTTTTAACCTTTT
258 AAAGAAATCATAAAACACGAGAACTTTGCTATGCATCACATGATAAAATTACTATTTAACCTCTT
* * * * *
56157561 AAAAGTTTATACTTTATCTTTGATTCTGAAACCAACGTTGCCTAGAAATTCAAATTTTAATATTT
323 AAAAATTTATACTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAACTCAAATTTTAATATTT
* * ** * *
56157626 AAAAATGAAATTATAAAAAATCATAAAACACGATAAGTTTT
388 AAAAAT-AAATTTTAAAAAAGCGCAAAACACAATTAGTTTT
* * * ** * *
56157667 CTATGCATTACATGGTAAATTTCAATTTTAACCACTCCAAAATTTATACTTTATCTTTAATTGCG
1 CTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTTCG
* * * *
56157732 TAACGGAGTTTG-C-C---A----ATTTCAATATTTAAAAAT-ATATTAAAAACAATCATAAGAC
66 TAACGGACTTCGACTCAAAATTCGATTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGAC
** * * * *
56157787 ACGAGAACTTCGCTATATATCACATTG-TAAATTTTCATTTTAATCTCTTAAAAATTTATACTTT
131 ACGAGAACTTCGCTATGCATCACA-TGATAAATTTCCATTTTAACCTCTTAAAAATTCAAACTTT
** * * * * *
56157851 ATCTTTGATTCTGTAATTGACTTTGCCTCGACATTCGAATTCTAATATCTAAAAATGAAATT-AA
195 ATCTTTGATTCTGTAA-TGACTTCACCTCAAAATTCGAATTTTAACATTTAAAAATGAAATTAAA
* * * * *
56157915 AAGAAATCATAAAACACGACAAGTTTGCTATGCATCACATGAT-AAATTTCCATGTAAACCTCTT
259 AAGAAATCATAAAACACGAGAACTTTGCTATGCATCACATGATAAAATTACTAT-TTAACCTCTT
* * * * ** *
56157979 AAAAATTTATATTTTATCTTTGATTCTGTAACTGACATTGCCTCGAATTTCAAATTTTAACATTT
323 AAAAATTTATACTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAACTCAAATTTTAATATTT
* * *
56158044 AAAAATAAAATTAAAAAAAGCGCAAAACACAATTAGTTTC
388 AAAAATAAATTTTAAAAAAGCGCAAAACACAATTAGTTTT
*
56158084 CCATGCATCA
1 CTATGCATCA
56158094 TGTAACGCCC
Statistics
Matches: 1452, Mismatches: 214, Indels: 101
0.82 0.12 0.06
Matches are distributed among these distances:
417 50 0.03
418 229 0.16
419 18 0.01
420 1 0.00
422 7 0.00
423 108 0.07
424 171 0.12
425 86 0.06
426 36 0.02
427 380 0.26
428 55 0.04
429 91 0.06
432 5 0.00
436 5 0.00
438 167 0.12
439 40 0.03
440 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (427 bp):
CTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTTCG
TAACGGACTTCGACTCAAAATTCGATTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGAC
ACGAGAACTTCGCTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTCAAACTTTA
TCTTTGATTCTGTAATGACTTCACCTCAAAATTCGAATTTTAACATTTAAAAATGAAATTAAAAA
GAAATCATAAAACACGAGAACTTTGCTATGCATCACATGATAAAATTACTATTTAACCTCTTAAA
AATTTATACTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAACTCAAATTTTAATATTTAAA
AATAAATTTTAAAAAAGCGCAAAACACAATTAGTTTT
Found at i:56157817 original size:132 final size:133
Alignment explanation
Indices: 56157613--56157999 Score: 334
Period size: 132 Copynumber: 2.8 Consensus size: 133
56157603 TAGAAATTCA
* * * ** * *
56157613 AATTTTAATATTTAAAAATGAAATTATAAAAAATCATAAAACACGATAAGTTTTCTATGCATTAC
1 AATTTCAATATTTAAAAATGAAATTATAAAAAATCATAAAACACGAGAACTTCGCTATACATCAC
*
56157678 ATGGTAAA-TTTCAATTTTAACCACTCCAAAATTTATACTTTATCTTTAATTGCGTAACGGAGTT
66 ATGGTAAATTTTC-ATTTTAACCACTCAAAAATTTATACTTTATCTTTAATTGCGTAACGGAGTT
56157742 TGCC
130 TGCC
* * *
56157746 AATTTCAATATTTAAAAAT-ATATTA-AAAACAATCATAAGACACGAGAACTTCGCTATATATCA
1 AATTTCAATATTTAAAAATGAAATTATAAAA-AATCATAAAACACGAGAACTTCGCTATACATCA
* * * * * ** *
56157809 CATTGTAAATTTTCATTTTAATCTCTTAAAAATTTATACTTTATCTTTGATT-CTGTAATTGACT
65 CATGGTAAATTTTCATTTTAACCACTCAAAAATTTATACTTTATCTTTAATTGC-GTAACGGAGT
56157873 TTGCCTC
129 TTG-C-C
* * * *
56157880 GACATTCGAATTCTAATATCTAAAAATGAAATTA-AAAGAAATCATAAAACACGACAAGTTTGCT
1 -A-A-T----TTC-AATATTTAAAAATGAAATTATAAA-AAATCATAAAACACGAGAACTTCGCT
* * * * * * * *
56157944 ATGCATCACATGATAAATTTCCATGTAAACCTCTTAAAAATTTATATTTTATCTTT
57 ATACATCACATGGTAAATTTTCATTTTAACCACTCAAAAATTTATACTTTATCTTT
56158000 GATTCTGTAA
Statistics
Matches: 205, Mismatches: 34, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
131 5 0.02
132 81 0.40
133 23 0.11
134 1 0.00
135 1 0.00
136 1 0.00
137 1 0.00
141 3 0.01
142 12 0.06
143 76 0.37
144 1 0.00
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (133 bp):
AATTTCAATATTTAAAAATGAAATTATAAAAAATCATAAAACACGAGAACTTCGCTATACATCAC
ATGGTAAATTTTCATTTTAACCACTCAAAAATTTATACTTTATCTTTAATTGCGTAACGGAGTTT
GCC
Found at i:56161123 original size:285 final size:282
Alignment explanation
Indices: 56160297--56162088 Score: 1827
Period size: 285 Copynumber: 6.3 Consensus size: 282
56160287 GGGTGTTACA
* * *
56160297 CATCACATTGTAAATTTCCATTTTAACCCCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-T
1 CATCACATGGTAAA-TTCCTTTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
* * * *
56160361 CAAC-TTGGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAGTTAAAAAAATCATAAAACACA
65 -GACGTT-GCCTTAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACA
* * * * *
56160425 AGAACTTTGCTATGCATCACATGATAAATTTCCATTTTAATCACTTAAAAATTTATACTTTATCT
128 AGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
* * * * *
56160490 TTGATTCTGTAAAC--AATGTTGCCTCGAAATTAGATTTTTTACTATTTAAAAATGAAATTATAA
193 TTGATTCTGT-AACGGACT-TTGCCTCGAAATTCGA-GTTTCAATATTTAAAAATGAAATTA-AA
* ** *
56160553 AAAATCATAAAACAC-AAGAAGTTTTATATA
254 AAAATCATAAAACACGAA-AA-CTTGCTATG
* * * *
56160583 CATCCCATGGTAAATTTCTATTTTAACCACTTAAAAATTTATACTTTATCTTTGATTCTGTAACC
1 CATCACATGGTAAATTCCT-TTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
* *
56160648 GACGTTGCCTTAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAAAAACATAAAACACA
65 GACGTTGCCTTAAAATTCGAATTTTAATATTTAAAAATGAAATT--AAAAAAATCATAAAACACA
* *
56160713 AGAAGTTTTCTATGCATCAAATGGTAAATTTCCATTTTAAACTCTTAAAAATATATACTTTATCT
128 AGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
* * * * * *
56160778 ATAATTCCGTAACGAACTTTGCCTCAAAATTCGAGTTTCAATATCTAAAAATGAAATTAAAAAGA
193 TTGATTCTGTAACGGACTTTGCCTCGAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAA-A
* *
56160843 CTCATAAGACACGAAAACATTGCTATG
257 ATCATAAAACACGAAAAC-TTGCTATG
* *
56160870 CATCACATGGTAAACTTCCTTTCTAACCTCTTAAAAATTTATACTTTATCTTTGACTCTGTAACT
1 CATCACATGGTAAA-TTCCTTTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
* * * * * * ** * *
56160935 AACGTTGCCTTAAAACTCGAATTTTAATATTTAAAAATAAAATTACACAAAGCGCAACACACAAT
65 GACGTTGCCTTAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACAAG
* ** * *
56161000 TAGTTTTCTACACGTCACATGGTAAATTTCCAATTTAAACTCTTAAAAATTTATACTTTATCTTT
130 AAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCTTT
** * * *
56161065 GATTCTGTAACGGACTTCACCTTGAAATTCGAGTATCAATATTTAAAAATGAAATTAAAAATATT
195 GATTCTGTAACGGACTTTGCCTCGAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAA-AAT
* * **
56161130 AATAAGACACGTTAACTTCGCTATG
259 CATAAAACACGAAAACTT-GCTATG
* * * * * * *
56161155 CATCACATTGCAAATTTCTATCTTAATCTCTTAAAAATTTGTACTGTATCTTTGATTCTGTAAC-
1 CATCACATGGTAAATTCCT-TTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
* * * * *
56161219 CA-GCTT-CACCTAGAAAATCGAATTTTATTATTTAAAAATGAAATTAAAAAAATCATAAATCAC
65 GACG-TTGC-CTTA-AAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACAC
* * *
56161282 GAGAAGTTTTTTATGCATCACATGGTAAATTTCCA-TTTAAACCACTTAAAAATTTATACTTTAT
127 AAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAA-CTCTTAAAAATTTATACTTTAT
* * * *
56161346 ATTTGATTCTCTAATC-GA-TGTTGCCTCGAAATTCGAAGTTT-AAAATTTAAAAATGATATTAT
191 CTTTGATTCTGTAA-CGGACT-TTGCCTCGAAATTCG-AGTTTCAATATTTAAAAATGAAATTA-
* ** *
56161408 AAAAAATCATAAAACATGAGAAGTTTTCTATG
252 AAAAAATCATAAAACACGA-AAACTTGCTATG
** * * * * ** *
56161440 CATCACATGGTAAATTTCAATTTTAACCACTTAAAAATTTCTACATTATCTTTAATTCCATAGC-
1 CATCACATGGTAAA-TTCCTTTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
** * * * * * *
56161504 GGGGTTTGCCTCAAAATTAGAGTTTCAAAATCTT-AAAAT-AAATTAAAAACAATCATAAGACAC
65 GACG-TTGCCTTAAAATTCGAATTTTAATAT-TTAAAAATGAAATTAAAAA-AATCATAAAACAC
* * ** * * * *
56161567 GAGAACTTCACTATGCATCACATTGTAAATTTCCATTTTAACCTCCTAAAAATTTGTACTTTATC
127 AAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATC
* * * * * *
56161632 TTTGATTCTGTAACCGACGTTGCCTCGAATTTCGAATTTTAATATTT-AAAATCAAATTAAAAAA
192 TTTGATTCTGTAACGGACTTTGCCTCGAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAA
56161696 ATCATAAAACACGAAAAGCTTGCTATG
257 ATCATAAAACACGAAAA-CTTGCTATG
* * * * *
56161723 CATCATATGGTAAATTTCTATTTTATCCTCTTTAAAATTTATACTTTCTCTTTGATTCTGTAA-T
1 CATCACATGGTAAATTCCT-TTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
* * * * *
56161787 CGACGTTGCCTTGAAATTCGAATTTTAATATTTAAAAATAAAATAAAATAAAAGCATAGAACACA
65 -GACGTTGCCTTAAAATTCGAATTTTAATATTTAAAAATGAAATTAAA-AAAATCATAAAACACA
* * *
56161852 AGGAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATATATACTTTATCT
128 AGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCT
* * * * * **
56161917 ATAATTTTGTAACGAACTTTGCCTCAAAATTATAGTTTCAATATTTAAAAATGAAATTAAAAAGA
193 TTGATTCTGTAACGGACTTTGCCTCGAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAA-A
* * * *
56161982 CTCATAAGACACGAGAACATCGCTATG
257 ATCATAAAACACGAAAAC-TTGCTATG
* * *
56162009 CATCACATGGTAAATTTCCTTTTTAACCTCTTAAAAATTTAAAATTTATCTTTGATTTTGTAACT
1 CATCACATGGTAAA-TTCCTTTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACT
56162074 GACGTTGCCTTAAAA
65 GACGTTGCCTTAAAA
56162089 CTCGGAAGTC
Statistics
Matches: 1234, Mismatches: 229, Indels: 86
0.80 0.15 0.06
Matches are distributed among these distances:
282 6 0.00
283 98 0.08
284 154 0.12
285 520 0.42
286 207 0.17
287 144 0.12
288 103 0.08
289 2 0.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (282 bp):
CATCACATGGTAAATTCCTTTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACTG
ACGTTGCCTTAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACAAGA
AGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAACTCTTAAAAATTTATACTTTATCTTTG
ATTCTGTAACGGACTTTGCCTCGAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAAATCA
TAAAACACGAAAACTTGCTATG
Found at i:56162082 original size:143 final size:141
Alignment explanation
Indices: 56160297--56162088 Score: 1784
Period size: 143 Copynumber: 12.6 Consensus size: 141
56160287 GGGTGTTACA
* *
56160297 CATCACATTGTAAATTTCCATTTTAACCCCTTAAAAATTTATACTTTATCTTTGATTCTGTAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * *
56160362 AAC-TTGGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAGTTAAAAAAATCATAAAACACAA
65 GACGTT-GCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
*
56160426 GAACTTTGCTATG
129 GAACTTTTCTATG
* * *
56160439 CATCACATGATAAATTTCCATTTTAATCACTTAAAAATTTATACTTTATCTTTGATTCTGTAAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGT-AAC
* * * * * *
56160504 AATGTTGCCTCGAAATTAGATTTTTTACTATTTAAAAATGAAATTATAAAAAATCATAAAACACA
65 GACGTTGCCTCAAAATTAGA-ATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACACG
* * *
56160569 AGAAGTTTTATATA
128 AGAACTTTTCTATG
* * *
56160583 CATCCCATGGTAAATTTCTATTTTAACCACTTAAAAATTTATACTTTATCTTTGATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * *
56160648 GACGTTGCCTTAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAAAAACATAAAACACA
65 GACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATT--AAAAAAATCATAAAACACG
*
56160713 AGAAGTTTTCTATG
128 AGAACTTTTCTATG
* * * * * *
56160727 CATCAAATGGTAAATTTCCATTTTAAACTCTTAAAAATATATACTTTATCTATAATTCCGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACG
* * * * * * *
56160792 AACTTTGCCTCAAAATTCGAGTTTCAATATCTAAAAATGAAATTAAAAAGACTCATAAGACACGA
66 -ACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGA
* * *
56160857 AAACATTGCTATG
129 GAACTTTTCTATG
* *
56160870 CATCACATGGTAAACTTCC-TTTCTAACCTCTTAAAAATTTATACTTTATCTTTGACTCTGTAAC
1 CATCACATGGTAAATTTCCATTT-TAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC
* * * * * * * * ** * *
56160934 TAACGTTGCCTTAAAACTCGAATTTTAATATTTAAAAATAAAATTACACAAAGCGCAACACACAA
65 -GACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
** * **
56160999 TTAGTTTTCTACA
129 GAACTTTTCTATG
* * *
56161012 CGTCACATGGTAAATTTCCAATTTAAACTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-
* ** * * * * * * *
56161077 GAC-TTCACCTTGAAATTCGAGTATCAATATTTAAAAATGAAATTAAAAATATTAATAAGACACG
65 GACGTT-GCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACG
** **
56161141 TTAACTTCGCTATG
128 AGAACTTTTCTATG
* * * * * * * *
56161155 CATCACATTGCAAATTTCTATCTTAATCTCTTAAAAATTTGTACTGTATCTTTGATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACG
* * * * *
56161220 A-GCTTCACCT-AGAAAATCGAATTTTATTATTTAAAAATGAAATTAAAAAAATCATAAATCACG
66 ACG-TT-GCCTCA-AAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACG
* *
56161283 AGAAGTTTTTTATG
128 AGAACTTTTCTATG
* * * *
56161297 CATCACATGGTAAATTTCCATTTAAACCACTTAAAAATTTATACTTTATATTTGATTCTCTAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * * * *
56161362 GATGTTGCCTCGAAATTCGAAGTTTAAAATTTAAAAATGATATTATAAAAAATCATAAAACATGA
65 GACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACACGA
*
56161427 GAAGTTTTCTATG
129 GAACTTTTCTATG
* * * * * ** *
56161440 CATCACATGGTAAATTTCAATTTTAACCACTTAAAAATTTCTACATTATCTTTAATTCCATAGCG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACG
** * * * *
56161505 GGGTTTGCCTCAAAATTAGAGTTTCAAAATCTT-AAAAT-AAATTAAAAACAATCATAAGACACG
66 ACG-TTGCCTCAAAATTAGAATTTTAATAT-TTAAAAATGAAATTAAAAA-AATCATAAAACACG
**
56161568 AGAACTTCACTATG
128 AGAACTTTTCTATG
* * *
56161582 CATCACATTGTAAATTTCCATTTTAACCTCCTAAAAATTTGTACTTTATCTTTGATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * *
56161647 GACGTTGCCTCGAATTTCGAATTTTAATATTT-AAAATCAAATTAAAAAAATCATAAAACACGAA
65 GACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
*
56161711 AAGC-TTGCTATG
130 AA-CTTTTCTATG
* * * * *
56161723 CATCATATGGTAAATTTCTATTTTATCCTCTTTAAAATTTATACTTTCTCTTTGATTCTGTAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
** * * * * * *
56161788 GACGTTGCCTTGAAATTCGAATTTTAATATTTAAAAATAAAATAAAATAAAAGCATAGAACACAA
65 GACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAA-AAAATCATAAAACACGA
* *
56161853 GGAGTTTTCTATG
129 GAACTTTTCTATG
* * * *
56161866 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATATATACTTTATCTATAATTTTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACG
* * * * * *
56161931 AACTTTGCCTCAAAATTATAGTTTCAATATTTAAAAATGAAATTAAAAAGACTCATAAGACACGA
66 -ACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGA
* **
56161996 GAACATCGCTATG
129 GAACTTTTCTATG
* * * *
56162009 CATCACATGGTAAATTTCCTTTTTAACCTCTTAAAAATTTAAAATTTATCTTTGATTTTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-
*
56162074 GACGTTGCCTTAAAA
65 GACGTTGCCTCAAAA
56162089 CTCGGAAGTC
Statistics
Matches: 1358, Mismatches: 259, Indels: 65
0.81 0.15 0.04
Matches are distributed among these distances:
141 121 0.09
142 420 0.31
143 590 0.43
144 226 0.17
145 1 0.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (141 bp):
CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACG
ACGTTGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGA
ACTTTTCTATG
Found at i:56163848 original size:43 final size:43
Alignment explanation
Indices: 56163800--56163904 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
56163790 GCCACAAAAG
* *
56163800 AAACGCCGCCAAAGGTCATGGCCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCACAC
*
56163843 AAACGCTGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCACAC
1 AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCACAC
*
56163886 AAACGCCGCTAAATGTCAT
1 AAACGCCGCTAAAGGTCAT
56163905 AAATTCAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGGCCTTTAGCGGCGCTTTTCACAC
Found at i:56164195 original size:18 final size:19
Alignment explanation
Indices: 56164158--56164198 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
56164148 ATTTAGAATC
56164158 AAAACTAAAATAAATAATA
1 AAAACTAAAATAAATAATA
* *
56164177 AAAACTAGATTAAAT-ATA
1 AAAACTAAAATAAATAATA
56164195 AAAA
1 AAAA
56164199 TATCAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.71, C:0.05, G:0.02, T:0.22
Consensus pattern (19 bp):
AAAACTAAAATAAATAATA
Found at i:56171314 original size:40 final size:40
Alignment explanation
Indices: 56171083--56171307 Score: 296
Period size: 40 Copynumber: 5.6 Consensus size: 40
56171073 CGAATGATGC
* * *
56171083 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAAT
*
56171123 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
56171163 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
56171203 CCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
56171243 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AAT
* *
56171283 CCAGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
56171308 AACGAGTAGC
Statistics
Matches: 170, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 159 0.94
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:56171314 original size:120 final size:119
Alignment explanation
Indices: 56171083--56171339 Score: 294
Period size: 120 Copynumber: 2.2 Consensus size: 119
56171073 CGAATGATGC
* * *
56171083 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
**
56171148 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAAT
66 TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT-AAT
* * **
56171203 CCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 CCGGGTTAAGTCCCGAAGGC-TTGGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
56171266 TGTGCGAGTTACTATAA-CCAGG-CTATG-TCCCGAAGGCATTTGAACGAGTAGCTAAT
64 TGTGCGAGTTACTA-AATCC-GGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAT
* *
56171322 CC-GGTTAAATTCCGAAGG
1 CCGGGTTAAGTCCCGAAGG
56171340 TACATGATTC
Statistics
Matches: 119, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
118 14 0.12
119 9 0.08
120 86 0.72
121 10 0.08
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
CCGGGTTAAGTCCCGAAGGCTTGGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTTG
TGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAT
Found at i:56174265 original size:7 final size:7
Alignment explanation
Indices: 56174253--56174324 Score: 56
Period size: 7 Copynumber: 10.1 Consensus size: 7
56174243 ACTAATTAAT
56174253 CTAAACC
1 CTAAACC
56174260 CTAAACC
1 CTAAACC
*
56174267 TCTTAACC
1 -CTAAACC
*
56174275 CT-ATCC
1 CTAAACC
*
56174281 CATAAACA
1 C-TAAACC
*
56174289 TTAAACC
1 CTAAACC
56174296 CTAAACC
1 CTAAACC
*
56174303 CTTAACC
1 CTAAACC
*
56174310 CTTAACC
1 CTAAACC
*
56174317 CCAAACC
1 CTAAACC
56174324 C
1 C
56174325 AACTTACACA
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
6 4 0.08
7 40 0.77
8 8 0.15
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:56174478 original size:46 final size:46
Alignment explanation
Indices: 56174410--56174503 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
56174400 CTTCAAATAC
*
56174410 TAGTTAACTCTTAAACCCTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
*
56174456 TAGTTAACTCATAAACCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
56174502 TA
1 TA
56174504 AACCTTAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.43, C:0.27, G:0.02, T:0.29
Consensus pattern (46 bp):
TAGTTAACTCATAAACCCTAAACCCTAAACCATATATCTTAAACCA
Found at i:56174518 original size:14 final size:14
Alignment explanation
Indices: 56174419--56174518 Score: 74
Period size: 14 Copynumber: 6.9 Consensus size: 14
56174409 CTAGTTAACT
*
56174419 CTTAAACCCTAAAC
1 CTTAAACCATAAAC
* * *
56174433 CCTAAACCATATAT
1 CTTAAACCATAAAC
56174447 CTTAAACCATAGTTAAC
1 CTTAAACCATA---AAC
* *
56174464 TCATAAACCTTAAAC
1 -CTTAAACCATAAAC
* * *
56174479 CCTAAACCATATAT
1 CTTAAACCATAAAC
56174493 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
56174507 CTTAAACTATAA
1 CTTAAACCATAA
56174519 TGATAATTAA
Statistics
Matches: 65, Mismatches: 17, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
14 52 0.80
15 3 0.05
17 1 0.02
18 9 0.14
ACGTcount: A:0.45, C:0.27, G:0.01, T:0.27
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:56174917 original size:41 final size:41
Alignment explanation
Indices: 56174668--56174910 Score: 346
Period size: 41 Copynumber: 5.9 Consensus size: 41
56174658 TTATATGACT
* * *
56174668 TTTAGCGACGTTTTACCAAAAGCGCCACTAATGCTATGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* *
56174709 TTTAGCGACGTTTTACCAAAAGCGCCGCTAATGCTATGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
*
56174750 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTTGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
56174791 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * *
56174832 TTTAGCGGCGTTTTTTACTAAAA-CGCCGCTATTGCTCT-GTT
1 TTTAGCGGCG--TTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * *
56174873 TTTAGCAGCGTTTTACCAAAAACGCCGCTATTGCTCTG
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTG
56174911 CGTTTTACAA
Statistics
Matches: 188, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 10 0.05
40 15 0.08
41 139 0.74
42 14 0.07
43 10 0.05
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:56175200 original size:13 final size:11
Alignment explanation
Indices: 56175172--56175205 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 11
56175162 GAACGCCAAG
56175172 AAGAAAAAAAA
1 AAGAAAAAAAA
56175183 AAGAAAAAGAAGA
1 AAGAAAAA-AA-A
56175196 AAGAAAAAAA
1 AAGAAAAAAA
56175206 TAATGGGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.38
12 4 0.19
13 9 0.43
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:56175995 original size:142 final size:141
Alignment explanation
Indices: 56175568--56183749 Score: 7256
Period size: 142 Copynumber: 57.8 Consensus size: 141
56175558 GGGCTTTACA
* * * * *
56175568 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTTATCTATAATTCCGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * *
56175633 GACTT-CAACTCAAAATTTGAGTTTTAGTATTTAAAAATGAAATTAAAAAGAATCA-AAAGACAC
66 GACTTGC--CTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAA-ACAC
* * *
56175696 TAGAACTTCGCTATG
127 GAGAAGTTTGCTATG
* * * * * * * *
56175711 CAACACATTGTAAATTTTCATCTTAATCTCTTAAAAGA-TTATACTGTATCTTTGATTCCGCAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAA-ATTTATACTTTATCTTTGATTCTGTAAC
* * * * * *
56175775 TGACTTTGCCTAGAAAATCAAATTTTAATATTTAAAAATGAAACTAAAAACAATCATAAATCACG
65 AGAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACG
*
56175840 AGAAGTATGCTATG
128 AGAAGTTTGCTATG
* ** * *
56175854 CATCATATGGTAAATTTCCATTTTCTCCTTTTAAAAATTTATACTTTATATTTGATT-TGTAACA
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * *
56175918 GACATTACCTCGAAATTCAAATTTTAATATTTTAAAATGAAATTATAAAAATTCATAAAACAAGA
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACACGA
*
56175983 GAAGTTTTCTATG
129 GAAGTTTGCTATG
* * * * * * **
56175996 CATTAGAAGGTAAATTTCCAATTTAACCACTTAAAAATTTATACTTTATCTTTGATTCCGTAATG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * *
56176061 GAGTTTGCCTCAAAATTC-AAGTTTCAA-ATTTTAAAAAT-AAATT-AAAAAATCATAAAACACG
66 GA-CTTGCCTCGAAATTCGAA-TTTTAATA-TTTAAAAATGAAATTAAAAAAATCATAAAACACG
56176122 AGAA-TTTCGCTATG
128 AGAAGTTT-GCTATG
* * * * * *
56176136 AATCACATTGTAAATTTACATTTTAGCCTCTTAAAAATTTATACTTTATCTTTGATTCTATAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
*** * *
56176201 GACTTAGCCTCGAAATAAAAATTTTAATATTTAAAAATGAAATTTAAAAAAAATCATACAACAGG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAA-TT-AAAAAAATCATAAAACACG
*
56176266 AGAAGTTTGTTATG
128 AGAAGTTTGCTATG
* * * **
56176280 CATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTTATTATGTAATT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * *
56176345 GAAGTTGCCTCGAAATTTGAATTTTAATATTTAAAAAT-AAAATAAAAAAAGT-ACAAAACACGA
66 G-ACTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAA-TCATAAAACACGA
* *
56176408 -ATAGTTTTCTGTG
129 GA-AGTTTGCTATG
* * * * * *
56176421 CATCACATGGTAAATTTCCATTTTAATCTCTTAAAAGTTGATACTTT-TTTTATAATTTTGTAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT-TGATTCTGTAAC
* * * * * * *
56176485 GGACTTCGACTCAAAATTTGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACG
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACG
* *
56176550 AGAACTTCGCTATG
128 AGAAGTTTGCTATG
* * * * *
56176564 CATCACATTGTAAATTTTCATTTTAACCTCTTAAAAGTTTTATACTTTATATTTGATTCTGTACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAA-ATTTATACTTTATCTTTGATTCTGTA-A
* *
56176629 CA-ACGTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTATAAAAAATCATAAAATAG
64 CAGAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACAC
*
56176693 GAGAAGTTTTCTATG
127 GAGAAGTTTGCTATG
* * * * * * * *
56176708 CATCACAAGGTAAATTTCTATTTTAACCACTTAAAAATATATACTTTATCTTTAATTCCGTATCG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * *
56176773 GAGTTTGCCTCAAAATTCGAGTTTCAAAATCTT-AAAAT-AAATTAAAAATAATCATAAGACACG
66 GA-CTTGCCTCGAAATTCGAATTTTAATAT-TTAAAAATGAAATTAAAAA-AATCATAAAACACG
* * *
56176836 A-AAATTTCACCATG
128 AGAAGTTT-GCTATG
* * * * * *
56176850 CATCACATTGTAAGTTTCTATTTTAACCTATTAAAAATTTATACTTTATCTTTGATTCTCTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * *
56176915 GATTTGGCCTCGAAATTCGAATTATAATATTTAAAAATTAAATTAAAAAAATCATAAAATATGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
* *
56176980 AAGCTTGCTATA
130 AAGTTTGCTATG
* * * * * * *
56176992 CATCACATGATAAGTTTCCATTTTAGCCTCTTCAAAATTTATACTCTATCTTT-ATTTTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * *
56177056 GACGTTACTTTGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAGAAAAGCATAAAACACAA
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAA-AAAATCATAAAACACGA
*
56177121 GAAGTTTTCTATG
129 GAAGTTTGCTATG
* * ** *
56177134 CATCACATGGTAAATTTCCGTTTTAACCTCTTAAAAATTTATACTTTATATTTGATTCTGTTGCT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
** * * * * *
56177199 GACTTGGCCTTAAAATTCAAATTTTAATATTTAAAAGTCAAGTTAAAAAAATCATAAAACATGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
** *
56177264 AAGTTCACTACG
130 AAGTTTGCTATG
** * * * * * *
56177276 CATTGCATTGTAAATTTTCATTTTAACCACTTAAAAAATTATACTTTATCTTTAATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * *
56177341 GAGTTCACCTCAAAATTCGAGTTTTAATAGTTAAAAAT-AAATTAAAAAAATCATAAGACACGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
* *
56177405 AATTTTGTTATG
130 AAGTTTGCTATG
* * *
56177417 CATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTTTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* *
56177482 GACTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATACAACACGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
56177547 AAGTTTGCTATG
130 AAGTTTGCTATG
* * * * *
56177559 CATCACATGATAAATTTCCATTTTAAACTCTTAAAAATTTATATTTTATCTTTTATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
** * * * **
56177624 GACGTTGCCTCGAAATTTAAATTTTAATATTTAAAAATAAAATAAAAAAAAGCGCAAAACA-GA-
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
* *
56177687 ATTACTTTTCTATG
130 A--AGTTTGCTATG
* * * * ** * *
56177701 AATCACATGGTAAATTTTCATTTTAACCTCTTAAAAGTTTATACTCTATCCATAATTGC-GAAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATT-CTGTAAC
* * * * * * *
56177765 GGACTTCGACTC-AAATTTCGAGTTTCAATATTTAAAAATGAAATCCAAAAGAATCATAAGACAC
65 AGACTT-GCCTCGAAA-TTCGAATTTTAATATTTAAAAATGAAAT-TAAAAAAATCATAAAACAC
* * * * *
56177829 AAGAACTTCGGTATC
127 GAGAAGTTTGCTATG
*
56177844 CATCATATGGTAAATTTCCATTTTAACCTAC-TAAAAATTTATACTTTATCTTTGATTCTGTAAC
1 CATCACATGGTAAATTTCCATTTTAACCT-CTTAAAAATTTATACTTTATCTTTGATTCTGTAAC
** * * *
56177908 CCACATTGCCTCAAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAATATCATAAAACATG
65 AGAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAA-ATCATAAAACACG
*
56177973 AGAACTTTGCTATG
128 AGAAGTTTGCTATG
** *
56177987 CATCACATGGTAAATTTCTTTTTTAACCTCTTAAAAATTTATATTTTATCTTTGATTCTGTAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * * *
56178052 -GATGTTGCCTCGAAAATCGAATTTTAATATTTAGAAATAAAATTTAAAAAAA-CACAAAACACT
65 AGA-CTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAA-TTAAAAAAATCATAAAACACG
*
56178115 A-ATAGTTTTCTATG
128 AGA-AGTTTGCTATG
* * *
56178129 CATCAC-------A---CTATTTTAACCTCTTAAAAGTTTATACTTTA--TTT-A-----TAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * ** * * *
56178176 GACTTCGACTC-AAATTGGAGCTTCAATACTTAAAAATGAAATTAAAAAGAATCATAAGACACGA
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGA
* * *
56178240 GAACTTCGCCATG
129 GAAGTTTGCTATG
* * *
56178253 TATCACATGGTAAATTTTCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTATAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * *
56178318 -GACTTCGCCTCGAATTTCGTAA-TTTAATATTTAAAAATGAAATTAAAAAGAATCATAAGACAT
65 AGACTT-GCCTCGAAATTCG-AATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACAC
56178381 GAGAA-TATTGC-A--
127 GAGAAGT-TTGCTATG
* * * * *
56178393 CATCGCATCGTAAATATCCATTTTAACCTCTTACAAATTTATACTTTATCTTTGATTCTATAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * *
56178458 -GACTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAACTCATAAAACACGA
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
*
56178522 -AACTTTGCTATG
129 GAAGTTTGCTATG
* * * * * *
56178534 CATCATATGGTAAATTTCTATTTTATCCACTTAAAAATTTATACTTTATCTTTAATTCTGTAATA
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * *
56178599 GAGTTTGCCTCAAAATTC-AAGTTTCAAAATCTT-AAAAT-AAATTAAAAACAATCATAAGATAC
66 GA-CTTGCCTCGAAATTCGAA-TTTTAATAT-TTAAAAATGAAATTAAAAA-AATCATAAAACAC
* *
56178661 GAGAACTTCGCTATG
127 GAGAAGTTTGCTATG
* ** * * * * **
56178676 AATCACATTATAAATTTTCATTTTAGCCTCTTAAAAGTTTATACTTTATCTTTGATTCTCTAATT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * *
56178741 GACTTTGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATT-AAAAAATCATAAAACACGAG
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
*
56178805 AACTTTGCTATG
130 AAGTTTGCTATG
* * * * * *
56178817 TATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTCAAACTTTATCTCTT-ATTCTTTAAT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT-TTGATTCTGTAAC
* **
56178881 TGACGTTGCCTCGAAATTAAAATTTTAATATTTAAAAATGAAATTACAAAAAAATCATAAAACAC
65 AGAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATT--AAAAAAATCATAAAACAC
* **
56178946 AAGAAGTTTTATATG
127 GAGAAGTTTGCTATG
* * *
56178961 CATCACATGGTAAATTTCCATTTTAACCAACTAAAAACCAACTAAAAATTTATACTTTAACTTTA
1 CATCACATGGTAAATTTCCATTTTAA-C--CT------C--TTAAAAATTTATACTTTATCTTTG
* ** * * * *
56179026 ATTTTGTAA-AG--TTCGCCTAAAAATTCGAGTTTCAAAATCTT-AAAAT-AAATTTAAAACAAT
55 ATTCTGTAACAGACTT-GCCTCGAAATTCGAATTTTAATAT-TTAAAAATGAAA-TTAAAAAAAT
*
56179086 CATAAGACACGAGAA-----C-A--
117 CATAAAACACGAGAAGTTTGCTATG
* ** * * *
56179103 CAT----T-GTAAGTTTCCATTTTAACCTCTTAAAAATTTATACACTAACTTTGATTCTTTAAGA
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
** * * * * *
56179163 GACTTGGTGTCGAAATTCGAATTTCAATATTTAAAAATCAAATT-AGAAAATCATATAACACAAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
*
56179227 AAGCTTGCTATG
130 AAGTTTGCTATG
* * *
56179239 CATCACATGATAAATTTCCATTTTAACCTCTTTAAAATTTATACTTTATCTTTGATTCTGTAATA
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * ** * * *
56179304 ATTGATGTTGACTTAAAATTC-AAATTTAATATTGAAAAATGAAATTAAAAAAAGAGAGCATAAA
65 A--GA-CTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATT--AAAAA-A-ATCATAAA
* *
56179368 ACACAAGAAGTTTTCTATG
123 ACACGAGAAGTTTGCTATG
* * * **
56179387 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATATATACTTTATCTATAATTCCATAAC-
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * * **
56179451 GAACGTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATGTAATTAAAAAGATTCATAAGACATA
66 G-AC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACG
* *
56179516 AGAACTTCGCTATG
128 AGAAGTTTGCTATG
* * * * *
56179530 CATCACATTGTAAATTTCCATCTTAATCTCTGAAAAATTTATACTGTATCTTTGATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * * **
56179595 A-ACTCTGCCTAGAAAATCGAATTTTAACATTTCAAAATGAAATTTAAAAAAATCATAAATCATA
65 AGACT-TGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAA-TTAAAAAAATCATAAAACACG
*
56179659 AGGAGTTTGCTATG
128 AGAAGTTTGCTATG
* ** *
56179673 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACATTATAATTGATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * ** * *
56179738 GACGTTACCTTGAAATTTTAATTTTAATATTTAAAAATGAAATTATAAAAATTCATAAAACAAGA
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACACGA
56179803 GAAGTTCT-CTATG
129 GAAGTT-TGCTATG
* * * * *
56179816 CAAT-ACAAGGTAAATTTCCATTTTAACCACTTAAAAAATTATACTTTATCTTTAATTCCGTAAC
1 C-ATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC
* * * * * *
56179880 GGAGTTCGCCTCAAAATTCGAGTTTTAATATTTAAAAAT-AAATTTAAAAAATCATAAGACACGA
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
*
56179944 GAATTTTGCTATG
129 GAAGTTTGCTATG
* * * * *
56179957 AATCACATTGTAAATTTCTATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTTTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * *
56180022 GACTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATGGAATTAAAAAAAATCATACAA-ACTA
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACACGA
56180086 GAAGTTTGCTATG
129 GAAGTTTGCTATG
* * * *
56180099 CATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTTATATTTTATCTTTTATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * *
56180164 GACGTTGCCTCGAAATTTGAATTTTAATATTTAAAAATAAAATAAAAAAAAGTGC--AAAACACA
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAA-T-CATAAAACACG
** * *
56180227 ATTAGTTTTCTGTG
128 AGAAGTTTGCTATG
* * * * *
56180241 CATCA-ATGGTAAATTTCCATTTTAGCCTCTTAAAAGTTTGTACTTTAT-TTATAATTCCGTAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT-TGATTCTGTAAC
* ** * * * * * *
56180304 GGACTTCGATTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATGAGATACG
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACG
* *
56180369 AGAACTTCGCTATG
128 AGAAGTTTGCTATG
* * * *
56180383 CATCACATGGTAAATTTTCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTTTATAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * *
56180448 GACCTCGCCTCGAAATTCAAATTTTAATATTTAAAAATAAAATTTTAAAAAATCATAAAATATGA
66 GA-CTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAA-TTAAAAAAATCATAAAACACGA
*
56180513 GAATTTTGCTATG
129 GAAGTTTGCTATG
* * * * * **
56180526 CATCACGTGGTAAATTTCCATTTTAACCTATCAAAAAATTATACTTTTTCTTTGATTCTGTAATG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * *
56180591 GACTTACCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACGAG
66 GACTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGAG
* * *
56180656 AACTTCGCTACG
130 AAGTTTGCTATG
* * * * * *
56180668 CATCGCATTGTAAATTTCCATTTTAGCCTCTCACAAATTTATACTTTATCTTTGATTCTATAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * *
56180733 A-ACTTGGTCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAACTAATAAAACACGA
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
*
56180797 GAACTTTGCTATG
129 GAAGTTTGCTATG
* * *
56180810 CATCATATGGTAAATTTCCAATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAGC
1 CATCACATGGTAAATTTCC-ATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC
* * * * * * * *
56180875 CGACTTCGCGTTGAAATTTGAGTTTTAATATTTAAAAATGAAATTAAAGAGAATCATAAGACACA
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAA-AAAATCATAAAACACG
* *
56180940 AGAACTTCGCTATG
128 AGAAGTTTGCTATG
* * * * * * * *** *
56180954 CATCACATTGAAAATTTTCATTTTAACCAT-TTAGAAATTTACACTATATCTTTAATTCCACAAT
1 CATCACATGGTAAATTTCCATTTTAACC-TCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC
* * * *
56181018 AGACTTCACCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAATACGA
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
*
56181083 GAAGTTTTCTATG
129 GAAGTTTGCTATG
* * * * *
56181096 CATCACAT-ATAAATTTCCTTTTTAACCTCTT-AAAATTTATACTTTATCTTTAATTTTGAAAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTG-TAAC
* * * * * *
56181159 A-ATGTTACCTTGGAAGTT-GAATTTTAATATTTAAAAATAAAATTTAAAAAATCATAAAACACG
65 AGA-CTTGCC-TCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACG
*
56181222 AAAAGTTTGCTATG
128 AGAAGTTTGCTATG
** ** * * *
56181236 CATCACATAATAAATTTCCATCATAACCTCTTAAAAATTTATACTTTAACTTTTATTCTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * * ** *
56181301 GATGTTGCCTCGAAACTCAAATTTTAATATTTAAAAGTAAAATTAAAAAAAACGCAAAACACGAT
66 GA-CTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
* *
56181366 TAGTTTTCTATG
130 AAGTTTGCTATG
* * * * * * *
56181378 CATCACCTGGT-ACTTTCCATTTT-A--TCTTAAAATTTTATATTCTTATCTATAATTCCGTAA-
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT-TTATCTTTGATTCTGTAAC
* * * * * *
56181438 TGAACTTCCACTC-AATATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAGAATCATAAGACA
65 AG-ACTTGC-CTCGAA-ATTCGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACA
* * *
56181502 CGAGAACTTCGCTAAG
126 CGAGAAGTTTGCTATG
* * * *
56181518 CATCACATGGTAAATATCCATTTTAATCTATTAAAAATTTATACTTTATCTTTGATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * *
56181583 GACTTGGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAATACGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
*
56181648 AAGTTTTCTATG
130 AAGTTTGCTATG
* * * * *
56181660 CATCACAT-ATAAATTTCCTTTTTAACCTCTT-AAAATTTATACTTTATCTTTAATTTTGAAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * * *
56181723 A-ATGTTACCTTGGAAGTT-GAATTTTAATATTTAAAAATAAAATTTAAAAAATCATAAAACACG
65 AGA-CTTGCC-TCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACG
*
56181786 AAAAGTTTGCTATG
128 AGAAGTTTGCTATG
** ** * * *
56181800 CATCACATAATAAATTTCCATCATAACCTCTTAAAAATTTATACTTTAACTTTTATTCTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * * ** *
56181865 GATATTGCCTCGAAACTCAAATTTTAATATTTAAAAGTAAAATTAAAAAAAACGCAAAACACGAT
66 GA-CTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
* *
56181930 TAGTTTTCTATG
130 AAGTTTGCTATG
* * * * * * *
56181942 CATCACCTGGT-ACTTTCCATTTT-A--TCTTAAAATTTTATATTCTTATCTATAATTCCGTAA-
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT-TTATCTTTGATTCTGTAAC
* * * * * *
56182002 TGAACTTCCACTC-AATATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAGAATCATAAGACA
65 AG-ACTTGC-CTCGAA-ATTCGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACA
* * *
56182066 CGAGAACTTCGCTAAG
126 CGAGAAGTTTGCTATG
* * * *
56182082 CATCACATGGTAAATATCCATTTTAATCTATTAAAAATTTATACTTTATCTTTGATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * *
56182147 GACTTGGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAATACGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
*
56182212 AAGTTTTCTATG
130 AAGTTTGCTATG
* * * * *
56182224 CATCACAT-ATAAATTTCCTTTTTAACCTCTT-AAAATTTATACTTTATCTTTAATTTTGAAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * * *
56182287 A-ATGTTACCTTGGAAGTT-GAATTTTAATATTTAAAAATAAAATTTAAAAAATCATAAAACACG
65 AGA-CTTGCC-TCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACG
*
56182350 AAAAGTTTGCTATG
128 AGAAGTTTGCTATG
** ** * * * *
56182364 CATCACATAATAAATTTCCATCATAACCTCTTAAAAATATATACTTTAACTTTTATTCTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * * * ** *
56182429 GATGTTGCCTCGAAACTCAAATTTTAATATATAAAAGTAAAATTAAAAAAAACGCAAAACACGAT
66 GA-CTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
* *
56182494 TAGTTTTCTATG
130 AAGTTTGCTATG
* * * * * * *
56182506 CATCACCTGGT-ACTTTCCATTTT-A--TCTTAAAATTTTATAGTCTTATCTATAATTCCGTAA-
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT-TTATCTTTGATTCTGTAAC
* * * * * *
56182566 TGAACTTCCACTC-AATATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAGAATCATAAGACA
65 AG-ACTTGC-CTCGAA-ATTCGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACA
* * *
56182630 CGAGAACTTCGCTAAG
126 CGAGAAGTTTGCTATG
* * * *
56182646 CATCACATGGTAAATATCCATTTTAATCTATTAAAAATTTATACTTTATCTTTGATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * *
56182711 GACTTGGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAATACGAG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
*
56182776 AAGTTTTCTATG
130 AAGTTTGCTATG
** * * * *
56182788 CATCACATTATAAATTTCCTTTTTAACCTCTT-AAAATTTATACTTTATCTTTAATTTTGAAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
* * * * *
56182852 A-ATGTTACCTTGGAAGTT-GAATTTTAATATTTAAAAATGAAATTATAAAAAATCAAAAAACAC
65 AGA-CTTGCC-TCGAAATTCGAATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACAC
56182915 GAGAAG-TT--TATG
127 GAGAAGTTTGCTATG
* * * * * * *
56182927 CATGACAAGGTGAATTTCTATTTTAACCACTTAAAAATTTATATTTTATCTTTAATTGC-GTAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATT-CTGTAAC
* * * * * * * *
56182991 -GAAGTTTACCTCAAAATTC--ATGATTCAGTATTTAAAAAT-ATACTAAAAACAATCATAAGAC
65 AG-A-CTTGCCTCGAAATTCGAAT--TTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAAC
* *
56183052 ACGAGAACTTCGCTATG
125 ACGAGAAGTTTGCTATG
* * * * *
56183069 TATCACATTGTAAATTTCCATTTTAATCTCTTAAAAATTTATACTTTATCTTTGATTATGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * ** *
56183134 GACTTTGCCTCTACATTCAAATTTTAATATCAAAAAATGAAATTAAAAAAAATCATAAAACACCA
66 GAC-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACACGA
* *
56183199 CAAGTTTTCTATG
129 GAAGTTTGCTATG
* * * * * *
56183212 CATCACATGATAAATCTCCATCTTAACCTCTTAAAAATTTATACTCTATCTTTGATTTTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * * * *
56183277 GACGTTGCCTCGAATTTC-ATATTTTAATATTTAGAAATAAAATTTAAAAAAGCAGAACACACAA
66 GAC-TTGCCTCGAAATTCGA-ATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
** *
56183341 TTAGTTTTCTATG
129 GAAGTTTGCTATG
* * * * * * *
56183354 CATCACATTGTATATTTCCATATTAACCTCTTAAAAAATTATATTTTATCTTTAATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
* * * * * * * * * *
56183419 GGCTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGGAATTGAAAACAATCATAACAGATGG
66 GACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACACGA
* *
56183484 GAACTTTGCCATG
129 GAAGTTTGCTATG
* * * * *
56183497 CATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTCTAACTCTATAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-
* *
56183562 A-ACTTGGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
65 AGACTT-GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGA
*
56183626 GAACTTTGCTATG
129 GAAGTTTGCTATG
* * *
56183639 CATCACATGATAAATTTTCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTATAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAA-C
*
56183704 A-ACGTTGCCTCGAAATTTGAATTTTAATATTTAAAAAATGAAATTA
65 AGAC-TTGCCTCGAAATTCGAATTTTAATATTT-AAAAATGAAATTA
56183750 TAGAAAATGG
Statistics
Matches: 6512, Mismatches: 1248, Indels: 558
0.78 0.15 0.07
Matches are distributed among these distances:
122 7 0.00
123 27 0.00
124 30 0.00
125 1 0.00
126 27 0.00
127 2 0.00
128 20 0.00
129 28 0.00
130 6 0.00
131 1 0.00
132 28 0.00
133 1 0.00
134 31 0.00
135 1 0.00
136 7 0.00
137 17 0.00
138 78 0.01
139 200 0.03
140 647 0.10
141 1043 0.16
142 1934 0.30
143 1723 0.26
144 435 0.07
145 34 0.01
146 23 0.00
147 3 0.00
148 79 0.01
150 20 0.00
151 5 0.00
152 24 0.00
153 3 0.00
154 3 0.00
155 24 0.00
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.37
Consensus pattern (141 bp):
CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACA
GACTTGCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGA
AGTTTGCTATG
Found at i:56178894 original size:564 final size:565
Alignment explanation
Indices: 56175568--56183749 Score: 7280
Period size: 564 Copynumber: 14.4 Consensus size: 565
56175558 GGGCTTTACA
* * *
56175568 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTTATCTATAATTCCGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
*** * * * * * *
56175633 GACTTCAACTCAAAATTTGAGTTTTAGTATTTAAAAATGAAATTAAAAAGAATCA-AAAGACACT
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAA-AATCATAAA-ACACG
* * * * * * *
56175697 AGAACTTCGCTATGCAACACATTGTAAATTTTCATCTTAATCTCTTAAAAGA-TTATACTGTATC
128 AGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAA-ATTTATACTTTATC
* * * * *
56175761 TTTGATTCCGCAACTGACTTTGCCT-AGAAAATCAAATTTTAATATTTAAAAATGAAACTAAAAA
192 TTTGATTCTGTAA-TGACTTTGCCTCA-AAATTCAAGTTTTAATATTTAAAAATGAAATTAAAAA
* * ** *
56175825 CAATCATAA-ATCACGAGAAGTAT-GCTATGCATCATATGGTAAATTTCCATTTTCTCCTTTTAA
255 -AATCATAAGA-CACGAGAACT-TCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAA
* * * * * *
56175888 AAATTTATACTTTATATTTGATT-TGTAACAGACATTACCTCGAAATTCAAATTTTAATATTTTA
317 AAATTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAA
* * * * * *
56175952 AAATGAAATTATAAAAATTCATAAAACAAGAGAAGTTTTCTATGCATTAGAAGGTAAATTTCCAA
382 AAATGAAATTA-AAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCAT
* ** ** *
56176017 TTTAACCACTTAAAAATTTATACTTTATCTTTGATTCCGTAATGGA-GTTTGCCTCAAAATTC-A
446 TTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTTTAACCGACG-TTGCCTCGAAATTCGA
*
56176080 AGTTTCAA-ATTTTAAAAAT-AAATT-AAAAAATCATAAAACACGAGAA-TTTCGCTATG
510 A-TTTTAATA-TTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGTTT-GCTA-G
* * * * * *
56176136 AATCACATTGTAAATTTACATTTTAGCCTCTTAAAAATTTATACTTTATCTTTGATTCTATAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAA-C
* *** * * *
56176201 GACTTAGCCTCGAAATAAAAATTTTAATATTTAAAAATGAAATTTAAAAAAAATCATACAACAGG
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAAT-AAAATT-AAAAAAATCATAAAACACG
* * *
56176266 AGAAGTTTGTTATGCATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
128 AGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * ** * * *
56176331 TTTATTATGTAATTGAAGTTGCCTCGAAATTTGAA-TTTTAATATTTAAAAAT-AAAATAAAAAA
193 TTGATTCTGTAA-TGACTTTGCCTC-AAAATTCAAGTTTTAATATTTAAAAATGAAATTAAAAAA
* ** * *
56176394 AGTACA-AA-ACACGA-ATAGTTTTCTGTGCATCACATGGTAAATTTCCATTTTAATCTCTTAAA
256 A-T-CATAAGACACGAGA-ACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAA
* * * * * * * ** * *
56176456 AGTTGATACTTT-TTTTATAATTTTGTAACGGACTTCGACTCAAAATTTGAGTTTCAATATTTAA
318 AATTTATACTTTATCTT-TGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAA
* * ** * *
56176520 AAATGAAATTAAAAAGAATCATAAGACACGAGAACTTCGCTATGCATCACATTGTAAATTTTCAT
382 AAATGAAATTAAAAA-AATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCAT
* * * * *
56176585 TTTAACCTCTTAAAAGTTTTATACTTTATATTTGATTCTGTACCCAACGTTGCCTCGAAATTCGA
446 TTTAACCTCTTAAAA-ATTTATACTTTATCTTTGATTCTTTAACCGACGTTGCCTCGAAATTCGA
* * *
56176650 ATTTTAATATTTAAAAATGAAATTATAAAAAATCATAAAATAGGAGAAGTTTTCTATG
510 ATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACACGAGAAGTTTGCTA-G
* * * * * *
56176708 CATCACAAGGTAAATTTCTATTTTAACCACTTAAAAATATATACTTTATCTTTAATTCCGTATCG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
* * * * * *
56176773 GAGTTTGCCTCAAAATTCGAGTTTCAAAATCTT-AAAAT-AAATTAAAAATAATCATAAGACACG
65 GACTTTGCCTCGAAATTCGAATTTTAATAT-TTAAAAATAAAATTAAAAA-AATCATAAAACACG
* * * * * * *
56176836 A-AAATTTCACCATGCATCACATTGTAAGTTTCTATTTTAACCTATTAAAAATTTATACTTTATC
128 AGAACTTT-GCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATC
* * * *
56176900 TTTGATTCTCTAACTGA-TTTGGCCTCGAAATTCGAA-TTATAATATTTAAAAATTAAATTAAAA
192 TTTGATTCTGTAA-TGACTTT-GCCTCAAAATTC-AAGTTTTAATATTTAAAAATGAAATTAAAA
* * * * * * * *
56176963 AAATCATAAAATATGAGAAGCTT-GCTATACATCACATGATAAGTTTCCATTTTAGCCTCTTCAA
254 AAATCATAAGACACGAGAA-CTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAA
* * * * * * **
56177027 AATTTATACTCTATCTTT-ATTTTGTAACCGACGTTACTTTGAAATTCAAATTTTAATATTTAAA
318 AATTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAA
* * *
56177091 AATGAAATTAAAGAAAAGCATAAAACACAAGAAGTTTTCTATGCATCACATGGTAAATTTCCGTT
383 AATGAAATTAAA-AAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATT
* * * ** *
56177156 TTAACCTCTTAAAAATTTATACTTTATATTTGATTCTGTT-GCTGAC-TTGGCCTTAAAATTCAA
447 TTAACCTCTTAAAAATTTATACTTTATCTTTGATTCT-TTAACCGACGTT-GCCTCGAAATTCGA
* * * * **
56177219 ATTTTAATATTTAAAAGTCAAGTTAAAAAAATCATAAAACATGAGAAGTTCACTACG
510 ATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGTTTGCTA-G
** * * * *
56177276 CATTGCATTGTAAATTTTCATTTTAACCACTTAAAAAATTATACTTTATCTTTAATTCTGTAACG
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
* ** * * * *
56177341 GAGTTCACCTCAAAATTCGAGTTTTAATAGTTAAAAAT-AAATTAAAAAAATCATAAGACACGAG
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGAG
* * *
56177405 AATTTTGTTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
130 AACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * *
56177470 GATTTTGTAACCGACTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATC
195 GATTCTGTAA-TGACTTTGCCTCAAAATTCAAGTTTTAATATTTAAAAATGAAATTAAAAAAATC
* * * *
56177535 ATACA-ACACGAGAAGTTTGCTATGCATCACATGATAAATTTCCATTTTAAACTCTTAAAAATTT
259 ATA-AGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTT
* * * * * * *
56177599 ATATTTTATCTTTTATTCTGTAACCGACGTTGCCTCGAAATTTAAATTTTAATATTTAAAAATAA
323 ATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAATGA
* * ** * * *
56177664 AATAAAAAAAAGCGCAAAACA-GA-ATTACTTTTCTATGAATCACATGGTAAATTTTCATTTTAA
388 AATTAAAAAAATCATAAAACACGAGA--AGTTTTCTATGCATCACATGGTAAATTTCCATTTTAA
* * ** * ** * * *
56177727 CCTCTTAAAAGTTTATACTCTATCCATAATTGC-GAAACGGAC-TTCGACTC-AAATTTCGAGTT
451 CCTCTTAAAAATTTATACTTTATCTTTGATT-CTTTAACCGACGTT-GCCTCGAAA-TTCGAATT
* * * * * * * * *
56177789 TCAATATTTAAAAATGAAATCCAAAAGAATCATAAGACACAAGAACTTCGGTATC
513 TTAATATTTAAAAATGAAAT-TAAAAAAATCATAAAACACGAGAAGTTTGCTA-G
* *
56177844 CATCATATGGTAAATTTCCATTTTAACCTAC-TAAAAATTTATACTTTATCTTTGATTCTGTAAC
1 CATCACATGGTAAATTTCCATTTTAACCT-CTTAAAAATTTATACTTTATCTTTAATTCTGTAA-
* * * *
56177908 CCACATTGCCTCAAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAATATCATAAAACATG
64 CGACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAA-ATCATAAAACACG
** *
56177973 AGAACTTTGCTATGCATCACATGGTAAATTTCTTTTTTAACCTCTTAAAAATTTATATTTTATCT
128 AGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* *
56178038 TTGATTCTGTAATCGA-TGTTGCCTCGAAAA-TCGAA-TTTTAATATTTAGAAATAAAATTTAAA
193 TTGATTCTGTAAT-GACT-TTGCCTC-AAAATTC-AAGTTTTAATATTTAAAAATGAAA-TTAAA
* * * * ** *
56178100 AAAA-CACAAAACACTA-ATAGTTTTCTATGCATCAC-------A---CTATTTTAACCTCTTAA
253 AAAATCATAAGACACGAGA-ACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAA
* * * ** ** * *
56178153 AAGTTTATACTTTA--TTT-A-----TAACGGACTTCGACTC-AAATTGGAGCTTCAATACTTAA
317 AAATTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAA
* * ** * * *
56178209 AAATGAAATTAAAAAGAATCATAAGACACGAGAACTTCGCCATGTATCACATGGTAAATTTTCAT
382 AAATGAAATTAAAAA-AATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCAT
* * *
56178274 TTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTATAATCGAC-TTCGCCTCGAATTTCGT
446 TTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTTTAACCGACGTT-GCCTCGAAATTCG-
* *
56178338 AA-TTTAATATTTAAAAATGAAATTAAAAAGAATCATAAGACATGAGAA-TATTGC-A-
509 AATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGAGAAGT-TTGCTAG
* * * * * *
56178393 CATCGCATCGTAAATATCCATTTTAACCTCTTACAAATTTATACTTTATCTTTGATTCTATAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAA-C
* * *
56178458 GACTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAACTCATAAAACACGA-
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGAG
* * * *
56178522 AACTTTGCTATGCATCATATGGTAAATTTCTATTTTATCCACTTAAAAATTTATACTTTATCTTT
130 AACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * *
56178587 AATTCTGTAATAGAGTTTGCCTCAAAATTCAAGTTTCAAAATCTT-AAAAT-AAATTAAAAACAA
195 GATTCTGTAAT-GACTTTGCCTCAAAATTCAAGTTTTAATAT-TTAAAAATGAAATTAAAAA-AA
* * ** * * *
56178650 TCATAAGATACGAGAACTTCGCTATGAATCACATTATAAATTTTCATTTTAGCCTCTTAAAAGTT
257 TCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATT
* ** ** *
56178715 TATACTTTATCTTTGATTCTCTAATTGACTTTGCCTTGAAATTCAAATTTTAATATTTAAAAATA
322 TATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAATG
* * * *
56178780 AAATT-AAAAAATCATAAAACACGAGAACTTTGCTATGTATCACATGATAAATTTCCATTTTAAC
387 AAATTAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAAC
* * ** **
56178844 CTCTTAAAAATTCAAACTTTATCTCTT-ATTCTTTAATTGACGTTGCCTCGAAATTAAAATTTTA
452 CTCTTAAAAATTTATACTTTATCT-TTGATTCTTTAACCGACGTTGCCTCGAAATTCGAATTTTA
* **
56178908 ATATTTAAAAATGAAATTACAAAAAAATCATAAAACACAAGAAGTTTTATATG
516 ATATTTAAAAATGAAATT--AAAAAAATCATAAAACACGAGAAGTTTGCTA-G
* *
56178961 CATCACATGGTAAATTTCCATTTTAACCAACTAAAAACCAACTAAAAATTTATACTTTAACTTTA
1 CATCACATGGTAAATTTCCATTTTAA-C--CT------C--TTAAAAATTTATACTTTATCTTTA
* * * ** * * * * *
56179026 ATTTTGTAA--AGTTCGCCTAAAAATTCGAGTTTCAAAATCTT-AAAATAAATTTAAAACAATCA
55 ATTCTGTAACGACTTTGCCTCGAAATTCGAATTTTAATAT-TTAAAAATAAAATTAAAAAAATCA
* *
56179088 TAAGACACGAGAA-----C-A--CAT----T-GTAAGTTTCCATTTTAACCTCTTAAAAATTTAT
119 TAAAACACGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTAT
** * * * * ** * * *
56179140 ACACTAACTTTGATTCTTTAAGAGACTTGGTGTCGAAATTCGAA-TTTCAATATTTAAAAATCAA
184 ACTTTATCTTTGATTCTGTAA-TGACTTTGCCTCAAAATTC-AAGTTTTAATATTTAAAAATGAA
* * *
56179204 ATT-AGAAAATCATATA-ACACAAGAAGCTT-GCTATGCATCACATGATAAATTTCCATTTTAAC
247 ATTAAAAAAATCATA-AGACACGAGAA-CTTCGCTATGCATCACATGGTAAATTTCCATTTTAAC
* ** * *
56179266 CTCTTTAAAATTTATACTTTATCTTTGATTCTGTAATAATTGA-TGTTGACTTAAAATTCAAA-T
310 CTCTTAAAAATTTATACTTTATCTTTGATTCTG---TAACGGACT-TTGCCTCAAAATTCAAATT
* * *
56179329 TTAATATTGAAAAATGAAATTAAAAAAAGAGAGCATAAAACACAAGAAGTTTTCTATGCATCACA
371 TTAATATTTAAAAATGAAATT--AAAAA-A-ATCATAAAACACGAGAAGTTTTCTATGCATCACA
* * * **
56179394 TGGTAAATTTCCATTTTAACCTCTTAAAAATATATACTTTATCTATAATTCCATAA-CGAACGTT
432 TGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTTTAACCG-ACGTT
* * * * * * ** *
56179458 GCCTCAAAATTCGAGTTTCAATATTTAAAAATGTAATTAAAAAGATTCATAAGACATAAGAACTT
496 GCCTCGAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGAGAAGTT
*
56179523 CGCTATG
560 TGCTA-G
* * * * * *
56179530 CATCACATTGTAAATTTCCATCTTAATCTCTGAAAAATTTATACTGTATCTTTGATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAA-C
* * * * * * * * **
56179595 AACTCTGCCTAGAAAATCGAATTTTAACATTTCAAAATGAAATTTAAAAAAATCATAAATCATAA
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAAT-AAAATTAAAAAAATCATAAAACACGA
* * * **
56179660 GGAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACATTATAAT
129 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * * * * *
56179725 TGATTCTGTAACCGACGTTACCTTGAAATTTTAA-TTTTAATATTTAAAAATGAAATTATAAAAA
194 TGATTCTGTAA-TGACTTTGCC-TCAAAATTCAAGTTTTAATATTTAAAAATGAAATTA-AAAAA
* * * * * * *
56179789 TTCATAAAACAAGAGAAGTTCTCTATGCAAT-ACAAGGTAAATTTCCATTTTAACCACTTAAAAA
256 ATCATAAGACACGAGAACTTCGCTATGC-ATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
* * * * * * *
56179853 ATTATACTTTATCTTTAATTCCGTAACGGAGTTCGCCTCAAAATTCGAGTTTTAATATTTAAAAA
320 TTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAA
* * * * *
56179918 T-AAATTTAAAAAATCATAAGACACGAGAA-TTTTGCTATGAATCACATTGTAAATTTCTATTTT
385 TGAAATTAAAAAAATCATAAAACACGAGAAGTTTT-CTATGCATCACATGGTAAATTTCCATTTT
*
56179981 AACCTCTTAAAAATTTATACTTTATCTTTGATT-TTGTAACCGAC-TTGGCCTCGAAATTCAAAT
449 AACCTCTTAAAAATTTATACTTTATCTTTGATTCTT-TAACCGACGTT-GCCTCGAAATTCGAAT
* * *
56180044 TTTAATATTTAAAAATGGAATTAAAAAAAATCATACAA-ACTAGAAGTTTGCTATG
512 TTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACACGAGAAGTTTGCTA-G
* * *
56180099 CATCACATGATAAATTTCCATTTTAACCTCTTAAAAATTTATATTTTATCTTTTATTCTGTAACC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAA-C
* * * *
56180164 GACGTTGCCTCGAAATTTGAATTTTAATATTTAAAAATAAAATAAAAAAAAGTGC--AAAACACA
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAA-T-CATAAAACACG
** * * * * * *
56180227 ATTAGTTTTCTGTGCATCA-ATGGTAAATTTCCATTTTAGCCTCTTAAAAGTTTGTACTTTAT-T
128 AGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * ** * *
56180290 TATAATTCCGTAACGGACTTCGATTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAG
193 T-TGATTCTGTAA-TGACTTTGCCTCAAAATTCAAGTTTTAATATTTAAAAATGAAATTAAAAA-
* * *
56180355 AATCATGAGATACGAGAACTTCGCTATGCATCACATGGTAAATTTTCATTTTAACCTCTTAAAAA
255 AATCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
* * * * * *
56180420 TTTATACTTTATCTTTGATTTTATAACTGACCTCGCCTCGAAATTCAAATTTTAATATTTAAAAA
320 TTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAA
* * * * *
56180485 TAAAATTTTAAAAAATCATAAAATATGAGAA-TTTTGCTATGCATCACGTGGTAAATTTCCATTT
385 TGAAA-TTAAAAAAATCATAAAACACGAGAAGTTTT-CTATGCATCACATGGTAAATTTCCATTT
* * * * * ** * * *
56180549 TAACCTATCAAAAAATTATACTTTTTCTTTGATTCTGTAATGGAC-TTACCTCAAAATTCGAGTT
448 TAACCTCTTAAAAATTTATACTTTATCTTTGATTCTTTAACCGACGTTGCCTCGAAATTCGAATT
* * * *
56180613 TCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACGAGAACTTCGCTACG
513 TTAATATTTAAAAATGAAATTAAAAA-AATCATAAAACACGAGAAGTTTGCTA-G
* * * * * * *
56180668 CATCGCATTGTAAATTTCCATTTTAGCCTCTCACAAATTTATACTTTATCTTTGATTCTATAATC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAA-C
* * * * * * *
56180733 AACTTGGTCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAACTAATAAAACACGAG
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGAG
*
56180798 AACTTTGCTATGCATCATATGGTAAATTTCCAATTTTAACCTCTTAAAAATTTATACTTTATCTT
130 AACTTTGCTATGCATCACATGGTAAATTTCC-ATTTTAACCTCTTAAAAATTTATACTTTATCTT
* ** * * ** ** *
56180863 TAATTCTGTAGCCGACTTCGCGTTGAAATTTGAGTTTTAATATTTAAAAATGAAATTAAAGAGAA
194 TGATTCTGTA-ATGACTTTGCCTCAAAATTCAAGTTTTAATATTTAAAAATGAAATTAAA-AAAA
* * * * *
56180928 TCATAAGACACAAGAACTTCGCTATGCATCACATTGAAAATTTTCATTTTAACCAT-TTAGAAAT
257 TCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACC-TCTTAAAAAT
* * * *** ** **
56180992 TTACACTATATCTTTAATTCCACAATAGACTTCACCTCAAAATTCAAATTTTAATATTTAAAAAT
321 TTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAAT
* * *
56181057 GAAATTAAAAAAATCATAAAATACGAGAAGTTTTCTATGCATCACAT-ATAAATTTCCTTTTTAA
386 GAAATTAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAA
* * * * * * * *
56181121 CCTCTT-AAAATTTATACTTTATCTTTAATT-TTGAAAACAATGTTACCTTGGAAGTT-GAATTT
451 CCTCTTAAAAATTTATACTTTATCTTTGATTCTT-TAACCGACGTTGCC-TCGAAATTCGAATTT
* * *
56181183 TAATATTTAAAAATAAAATTTAAAAAATCATAAAACACGAAAAGTTTGCTATG
514 TAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGTTTGCTA-G
** ** * *
56181236 CATCACATAATAAATTTCCATCATAACCTCTTAAAAATTTATACTTTAACTTTTATTCTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
* * * * **
56181301 GA-TGTTGCCTCGAAACTCAAATTTTAATATTTAAAAGTAAAATTAAAAAAAACGCAAAACACGA
65 GACT-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGA
** * * * * * *
56181365 TTAGTTTTCTATGCATCACCTGGT-ACTTTCCATTTT-A--TCTTAAAATTTTATATTCTTATCT
129 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT-TTATCT
* * * * * * * *
56181426 ATAATTCCGTAATGAAC-TTCCACTCAATATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAG
193 TTGATTCTGTAATG-ACTTTGC-CTCAAAATTCAAGTTTTAATATTTAAAAATGAAATT-AAAAA
* * * *
56181490 AATCATAAGACACGAGAACTTCGCTAAGCATCACATGGTAAATATCCATTTTAATCTATTAAAAA
255 AATCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
*
56181555 TTTATACTTTATCTTTGATTCTGTAACGGACTTGGCCTCAAAATTCAAATTTTAATATTTAAAAA
320 TTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAA
* * *
56181620 TGAAATTAAAAAAATCATAAAATACGAGAAGTTTTCTATGCATCACAT-ATAAATTTCCTTTTTA
385 TGAAATTAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTA
* * * * * * *
56181684 ACCTCTT-AAAATTTATACTTTATCTTTAATT-TTGAAACCAATGTTACCTTGGAAGTT-GAATT
450 ACCTCTTAAAAATTTATACTTTATCTTTGATTCTT-TAACCGACGTTGCC-TCGAAATTCGAATT
* * *
56181746 TTAATATTTAAAAATAAAATTTAAAAAATCATAAAACACGAAAAGTTTGCTATG
513 TTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGTTTGCTA-G
** ** * *
56181800 CATCACATAATAAATTTCCATCATAACCTCTTAAAAATTTATACTTTAACTTTTATTCTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
* * * * **
56181865 GA-TATTGCCTCGAAACTCAAATTTTAATATTTAAAAGTAAAATTAAAAAAAACGCAAAACACGA
65 GACT-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGA
** * * * * * *
56181929 TTAGTTTTCTATGCATCACCTGGT-ACTTTCCATTTT-A--TCTTAAAATTTTATATTCTTATCT
129 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT-TTATCT
* * * * * * * *
56181990 ATAATTCCGTAATGAAC-TTCCACTCAATATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAG
193 TTGATTCTGTAATG-ACTTTGC-CTCAAAATTCAAGTTTTAATATTTAAAAATGAAATT-AAAAA
* * * *
56182054 AATCATAAGACACGAGAACTTCGCTAAGCATCACATGGTAAATATCCATTTTAATCTATTAAAAA
255 AATCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
*
56182119 TTTATACTTTATCTTTGATTCTGTAACGGACTTGGCCTCAAAATTCAAATTTTAATATTTAAAAA
320 TTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAA
* * *
56182184 TGAAATTAAAAAAATCATAAAATACGAGAAGTTTTCTATGCATCACAT-ATAAATTTCCTTTTTA
385 TGAAATTAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTA
* * * * * * *
56182248 ACCTCTT-AAAATTTATACTTTATCTTTAATT-TTGAAACCAATGTTACCTTGGAAGTT-GAATT
450 ACCTCTTAAAAATTTATACTTTATCTTTGATTCTT-TAACCGACGTTGCC-TCGAAATTCGAATT
* * *
56182310 TTAATATTTAAAAATAAAATTTAAAAAATCATAAAACACGAAAAGTTTGCTATG
513 TTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGTTTGCTA-G
** ** * * *
56182364 CATCACATAATAAATTTCCATCATAACCTCTTAAAAATATATACTTTAACTTTTATTCTGTAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
* * * * * **
56182429 GA-TGTTGCCTCGAAACTCAAATTTTAATATATAAAAGTAAAATTAAAAAAAACGCAAAACACGA
65 GACT-TTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGA
** * * * * * *
56182493 TTAGTTTTCTATGCATCACCTGGT-ACTTTCCATTTT-A--TCTTAAAATTTTATAGTCTTATCT
129 GAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT-TTATCT
* * * * * * * *
56182554 ATAATTCCGTAATGAAC-TTCCACTCAATATTCGAGTTTCAATATTTAAAAATGAAATTCAAAAG
193 TTGATTCTGTAATG-ACTTTGC-CTCAAAATTCAAGTTTTAATATTTAAAAATGAAATT-AAAAA
* * * *
56182618 AATCATAAGACACGAGAACTTCGCTAAGCATCACATGGTAAATATCCATTTTAATCTATTAAAAA
255 AATCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
*
56182683 TTTATACTTTATCTTTGATTCTGTAACGGACTTGGCCTCAAAATTCAAATTTTAATATTTAAAAA
320 TTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAA
* ** *
56182748 TGAAATTAAAAAAATCATAAAATACGAGAAGTTTTCTATGCATCACATTATAAATTTCCTTTTTA
385 TGAAATTAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTA
* * * * * * *
56182813 ACCTCTT-AAAATTTATACTTTATCTTTAATT-TTGAAACCAATGTTACCTTGGAAGTT-GAATT
450 ACCTCTTAAAAATTTATACTTTATCTTTGATTCTT-TAACCGACGTTGCC-TCGAAATTCGAATT
* *
56182875 TTAATATTTAAAAATGAAATTATAAAAAATCAAAAAACACGAGAAGTTT-AT-G
513 TTAATATTTAAAAATGAAATTA-AAAAAATCATAAAACACGAGAAGTTTGCTAG
* * * * * *
56182927 CATGACAAGGTGAATTTCTATTTTAACCACTTAAAAATTTATATTTTATCTTTAATTGC-GTAAC
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATT-CTGTAAC
* * * * * * * *
56182991 GAAGTTTACCTCAAAATTC--ATGATTCAGTATTTAAAAAT-ATACTAAAAACAATCATAAGACA
65 G-ACTTTGCCTCGAAATTCGAAT--TTTAATATTTAAAAATAAAATTAAAAA-AATCATAAAACA
* * * *
56183053 CGAGAACTTCGCTATGTATCACATTGTAAATTTCCATTTTAATCTCTTAAAAATTTATACTTTAT
126 CGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * * * **
56183118 CTTTGATTATGTAACTGACTTTGCCTCTACATTCAAATTTTAATATCAAAAAATGAAATTAAAAA
191 CTTTGATTCTGTAA-TGACTTTGCCTCAAAATTCAAGTTTTAATATTTAAAAATGAAATT-AAAA
* * * * ** * * *
56183183 AAATCATAAAACACCACAAGTTTTCTATGCATCACATGATAAATCTCCATCTTAACCTCTTAAAA
254 AAATCATAAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAA
* * * * * * * *
56183248 ATTTATACTCTATCTTTGATTTTGTAACCGACGTTGCCTCGAATTTCATATTTTAATATTTAGAA
319 ATTTATACTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAA
* * * * * * ** * * *
56183313 ATAAAATTTAAAAAAGCAGAACACACAATTAGTTTTCTATGCATCACATTGTATATTTCCATATT
384 ATGAAATTAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTT
* * * * * * * *
56183378 AACCTCTTAAAAAATTATATTTTATCTTTAATTCTGTAACGGGC-TTCGCCTCAAAATTCGAGTT
449 AACCTCTTAAAAATTTATACTTTATCTTTGATTCTTTAACCGACGTT-GCCTCGAAATTCGAATT
* * * * * * * * *
56183442 TCAATATTTAAAAATGGAATTGAAAACAATCATAACAGATGGGAACTTTGCCATG
513 TTAATATTTAAAAATGAAATT-AAAAAAATCATAAAACACGAGAAGTTTGCTA-G
* * * *
56183497 CATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTCTAACTCTATAACT
1 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAAC-
* * * * *
56183562 AACTTGGCCTCAAAATTTGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAG
65 GACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGAG
* *
56183627 AACTTTGCTATGCATCACATGATAAATTTTCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
130 AACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * *
56183692 GATTCTATAATCAACGTTGCCTCGAAATTTGAA-TTTTAATATTTAAAAAATGAAATTA
195 GATTCTGTAAT-GACTTTGCCTC-AAAATTCAAGTTTTAATATTT-AAAAATGAAATTA
56183750 TAGAAAATGG
Statistics
Matches: 6425, Mismatches: 962, Indels: 452
0.82 0.12 0.06
Matches are distributed among these distances:
545 7 0.00
546 11 0.00
547 113 0.02
548 17 0.00
549 101 0.02
551 36 0.01
552 133 0.02
553 5 0.00
554 2 0.00
557 29 0.00
558 30 0.00
559 3 0.00
560 31 0.00
561 28 0.00
562 32 0.00
563 198 0.03
564 1536 0.24
565 170 0.03
566 336 0.05
567 635 0.10
568 760 0.12
569 677 0.11
570 827 0.13
571 309 0.05
572 119 0.02
573 5 0.00
574 23 0.00
575 91 0.01
576 56 0.01
577 76 0.01
578 2 0.00
579 27 0.00
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.37
Consensus pattern (565 bp):
CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTAATTCTGTAACG
ACTTTGCCTCGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAATCATAAAACACGAGA
ACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTG
ATTCTGTAATGACTTTGCCTCAAAATTCAAGTTTTAATATTTAAAAATGAAATTAAAAAAATCAT
AAGACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATA
CTTTATCTTTGATTCTGTAACGGACTTTGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAAT
TAAAAAAATCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAACCTCT
TAAAAATTTATACTTTATCTTTGATTCTTTAACCGACGTTGCCTCGAAATTCGAATTTTAATATT
TAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGTTTGCTAG
Found at i:56188232 original size:40 final size:40
Alignment explanation
Indices: 56188167--56188260 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
56188157 TCATCTCCGT
* * *
56188167 CCAACCCAACACACC--ATGTGGGGATAGAATCGACCCAC
1 CCAACCCTACACACCAGATATGGGGATAGAATCAACCCAC
** * *
56188205 CCAGTCCTACACACCAGATATGGGGATATAATCAACCCAT
1 CCAACCCTACACACCAGATATGGGGATAGAATCAACCCAC
56188245 CCAACCCTACACACCA
1 CCAACCCTACACACCA
56188261 AATGGTACCG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 12 0.27
40 33 0.73
ACGTcount: A:0.35, C:0.37, G:0.14, T:0.14
Consensus pattern (40 bp):
CCAACCCTACACACCAGATATGGGGATAGAATCAACCCAC
Found at i:56190677 original size:6 final size:6
Alignment explanation
Indices: 56190668--56190749 Score: 58
Period size: 6 Copynumber: 13.5 Consensus size: 6
56190658 GAAGTTTAGT
* * * * * * *
56190668 AAAATA AAAATA AACATA AACAGA AATATA GAAATG AAACTA AAAAT-
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
56190715 AAAATAA AAAAGA AAAAGAA AAAATA AAAATA AAA
1 AAAAT-A AAAATA AAAA-TA AAAATA AAAATA AAA
56190750 GAAAATAAAT
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
5 5 0.08
6 45 0.76
7 9 0.15
ACGTcount: A:0.77, C:0.04, G:0.06, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:56192387 original size:34 final size:37
Alignment explanation
Indices: 56192325--56192397 Score: 89
Period size: 34 Copynumber: 2.1 Consensus size: 37
56192315 AAACAAGAGC
* * *
56192325 AATAAAACAATATAATATAGTCAGTAAAACCAATAAT
1 AATAAAACAATATAATATAGTAAATAAAACAAATAAT
*
56192362 AATAAAACAATATAA-A-A-TAAATAAAATAAATAAT
1 AATAAAACAATATAATATAGTAAATAAAACAAATAAT
56192396 AA
1 AA
56192398 AGATAAGTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
34 15 0.47
35 1 0.03
36 1 0.03
37 15 0.47
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (37 bp):
AATAAAACAATATAATATAGTAAATAAAACAAATAAT
Found at i:56192389 original size:16 final size:16
Alignment explanation
Indices: 56192357--56192398 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
56192347 AGTAAAACCA
*
56192357 ATAATAATAAAACAAT
1 ATAATAATAAAAAAAT
56192373 ATAA-AATAAATAAAAT
1 ATAATAATAAA-AAAAT
56192389 A-AATAATAAA
1 ATAATAATAAA
56192399 GATAAGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 8 0.35
16 15 0.65
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (16 bp):
ATAATAATAAAAAAAT
Found at i:56194439 original size:980 final size:981
Alignment explanation
Indices: 56192540--56194500 Score: 3559
Period size: 980 Copynumber: 2.0 Consensus size: 981
56192530 GTCGAGTTGG
*
56192540 ATGAGAAGGAAAAGGAAGAGGGTTGTGGGGGAGATGGTTGGACGAAAGGGGTGGGGTTCTTGCAC
1 ATGAGAAGGAAAAGGAAGAGGGTTGTGGGGGAGATGGTTGGACGAAAGGGGTGGGGGTCTTGCAC
* *
56192605 GTGGGGGTTCGGGGTTGGCACGCGCAAGGTGGCTGAGGGGTGGGGTTCAGTTGAGAGAGGGGTCT
66 GTGGGGGTTCGGGGTTGGCACGAGCAAGGTGGCTGAGGGGTGGGGTTCAGTTGAAAGAGGGGTCT
56192670 AACAGGGAAAGGAAGTTCGAGGACGAGGTAGGACGACCGAGGAAAGGAATGGAGAGGGGAGACAG
131 AACAGGGAAAGGAAGTTCGAGGACGAGGTAGGACGACCGAGGAAAGGAATGGAGAGGGGAGACAG
*
56192735 TGCGGTGGCCGGAAAAGGATGATTAGAGGGCTTGCAATGGCTAGGGTTAGTGTAAAGAAGAAGAA
196 TGCGGTGGCCGAAAAAGGATGATTAGAGGGCTTGCAATGGCTAGGGTTAGTGTAAAGAAGAAGAA
56192800 GACAAAAGTAAAATAATAAAATAGATTTAGGGTTTAAATGGGTGACACGATCGTGTAAGGCCCAT
261 GACAAAAGTAAAATAATAAAATAGATTTAGGGTTTAAATGGGTGACACGATCGTGTAAGGCCCAT
*
56192865 GTTGGGCCACACGGCCGTGTCACATATTCGTGTGGTTTCTTGCCAGCCCATGTGCATTTAAAAAT
326 GTTGGGCCACACGGCCATGTCACATATTCGTGTGGTTTCTTGCCAGCCCATGTGCATTTAAAAAT
56192930 GAAAGCCCAATTTTCACATGGCCTTGGACACGCCCGTATGTCCAGGCCGTGTATACCATACGGCC
391 GAAAGCCCAATTTTCACATGGCCTTGGACACGCCCGTATGTCCAGGCCGTGTATACCATACGGCC
* * *
56192995 ATGTGCGATCTCCTTCGATTCTCTCACACCCGTGTGACCTATCATATGCCTGTGTGCGTTAAAAA
456 ATGTGCGATCTCCTTCGATTCTCCCACACCCGTGTGACCTATCATATGCCCGTGTGCATTAAAAA
56193060 TTTAAGCCTAGCTTTCACACGCCTCAGACACACCCATGTGTCCAGGCCATGTGGTCCACACAGCC
521 TTTAAGCCTAGCTTTCACACGCCTCAGACACACCCATGTGTCCAGGCCATGTGGTCCACACAGCC
* * *
56193125 GTGTTGCATGGCCATGTGCTACCCTTTTCGCTTCTCCCACGCCCGTGTGGTCTCCCATACATGGC
586 GTGTTGCATGGCCATGTGCTACCCTTTTCGCTTCTCCCACACCCGTGTGGTCTCCCACACACGGC
* *
56193190 CGTGTGTCTTGCCCATGTAACTCTCTGACTTGTTTTAAATTTGAAAAATTAAACTCTAGTTTTCA
651 CGTGTGTCTTGCCCATGTAACTATCTAACTTGTTTTAAATTTGAAAAATTAAACTCTAGTTTTCA
*
56193255 CACGGCCTAGGACACGCTCGTGTGTCCATGCTGTGTGATTCACACAATCGTGTCGCATGCTCGTG
716 CACGGCCTAGGACACGCTCGTGTGTCCATGCTGTGTGATTCACACAATCGTGTCACATGCTCGTG
* * *
56193320 TAGACTCTTTTAGGCTATGTCTCCGTCGATTTTTGGAAAAATTAAGTCTCAGGGTCTACACGGCC
781 TAGACTCTTTTAGGCCATGTCTCCATCGATTTTTGGAAAAATTAAGTCTCAGGGTCCACACGGCC
*
56193385 AAGAACATGCCCGTGTGTCCTGGACGTATGGGTTACACGGTCGTGTCGCTTGGCCGTGTAACTCT
846 AAGAACATGCCCGTGTGTCCTGGACGTATAGGTTACACGGTCGTGTCGCTTGGCCGTGTAACTCT
*
56193450 CTGTCGATTTCCTTAAAATTTAAAAACTAATTCATGAGATACACATGGCCGAGGACATGCCCGTG
911 CTGTCGATTTCCTTAAAATTTAAAAACTAATTCATGAGATACACATGGCCAAGGACATGCCCGTG
56193515 TATCCA
976 TATCCA
56193521 ATGAGAAGGAAAAGGAAGAGGGTTGTGGGGGAGATGGTTGGACGAAAGGGGTGGGGGTCTTGCAC
1 ATGAGAAGGAAAAGGAAGAGGGTTGTGGGGGAGATGGTTGGACGAAAGGGGTGGGGGTCTTGCAC
*
56193586 GTGGGGGTTCGGGGTTGGCGCGAGCAAGGTGGCTGAGGGGTGGGGTTCAGTTGAAAGAGGGGTCT
66 GTGGGGGTTCGGGGTTGGCACGAGCAAGGTGGCTGAGGGGTGGGGTTCAGTTGAAAGAGGGGTCT
*
56193651 AACAGGGAAAGGAAGTTCGAGGACGAGGTGGGACGACCGAAGG-AAGGAATGGAGAGGGGAGAC-
131 AACAGGGAAAGGAAGTTCGAGGACGAGGTAGGACGACCG-AGGAAAGGAATGGAGAGGGGAGACA
* *
56193714 GATGCGGTGGCC-AAAAAGGATGATTAGGGGGCTTGCAATGGCTAGGGTTAGTGTGAAGAAGAAG
195 G-TGCGGTGGCCGAAAAAGGATGATTAGAGGGCTTGCAATGGCTAGGGTTAGTGTAAAGAAGAAG
56193778 AAGACAAAAGTAAAATAATAAAATAGATTTAGGGTTTAAATGGGTGACACGATCGTGTAAGGCCC
259 AAGACAAAAGTAAAATAATAAAATAGATTTAGGGTTTAAATGGGTGACACGATCGTGTAAGGCCC
56193843 ATGTTGGGCCACACGGCCATGTCACATATTCGTGTGGTTTCTTGCCAGCCCATGTGCATTTAAAA
324 ATGTTGGGCCACACGGCCATGTCACATATTCGTGTGGTTTCTTGCCAGCCCATGTGCATTTAAAA
* *
56193908 ATGAAAGCCCAATTTTCACATGGCCTTGGATACGCCCGTGTGTCCAGGCCGTGTATACCATACGG
389 ATGAAAGCCCAATTTTCACATGGCCTTGGACACGCCCGTATGTCCAGGCCGTGTATACCATACGG
* *
56193973 CCATGTGCGATCTCCTTCGATTCTCCCACACTCGTGTGACCTCTCATATGCCCGTGTGCATTAAA
454 CCATGTGCGATCTCCTTCGATTCTCCCACACCCGTGTGACCTATCATATGCCCGTGTGCATTAAA
* *
56194038 AATTTAAGCCTAGCTTTCACACGCCTCAGACACACCCATGTGTCTAGGCTATGTGGTCCACACAG
519 AATTTAAGCCTAGCTTTCACACGCCTCAGACACACCCATGTGTCCAGGCCATGTGGTCCACACAG
*
56194103 CTGTGTTGCATGGCCATGTGCTACCCTTTTCGCTTCTCCCACACCCGTGTGGTCTCCCACACACG
584 CCGTGTTGCATGGCCATGTGCTACCCTTTTCGCTTCTCCCACACCCGTGTGGTCTCCCACACACG
*
56194168 GCCGTGTGTCTTGCCTATGTAACTATCTAACTTGTTTTAAATTTGAAAAATTAAACTCTAGTTTT
649 GCCGTGTGTCTTGCCCATGTAACTATCTAACTTGTTTTAAATTTGAAAAATTAAACTCTAGTTTT
* * *
56194233 CATACGGCCTAGGACACGCTCGTGTGTCCATGTTGTGTGATTCACACGATCGTGTCACATGCTCG
714 CACACGGCCTAGGACACGCTCGTGTGTCCATGCTGTGTGATTCACACAATCGTGTCACATGCTCG
56194298 TGTAGACTCTTTTAGGCCATGTCTCCATCGATTTTTGGAAAAATTAAGTCTCAGGGTCCACACGG
779 TGTAGACTCTTTTAGGCCATGTCTCCATCGATTTTTGGAAAAATTAAGTCTCAGGGTCCACACGG
*
56194363 CCAAGAACATGCCCGTGTGTCCTGGACGTGTAGGTTACACGGTCGTGTCGCTTGGCCGTGTAACT
844 CCAAGAACATGCCCGTGTGTCCTGGACGTATAGGTTACACGGTCGTGTCGCTTGGCCGTGTAACT
*
56194428 CTCTGTCGATTTCCTTAAAATTTAAAAACTAATTCATGAGATACACATGGCCAAGGACATGCCTG
909 CTCTGTCGATTTCCTTAAAATTTAAAAACTAATTCATGAGATACACATGGCCAAGGACATGCCCG
56194493 TGTATCCA
974 TGTATCCA
56194501 GGTCGTGTGG
Statistics
Matches: 942, Mismatches: 36, Indels: 5
0.96 0.04 0.01
Matches are distributed among these distances:
980 745 0.79
981 194 0.21
982 3 0.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (981 bp):
ATGAGAAGGAAAAGGAAGAGGGTTGTGGGGGAGATGGTTGGACGAAAGGGGTGGGGGTCTTGCAC
GTGGGGGTTCGGGGTTGGCACGAGCAAGGTGGCTGAGGGGTGGGGTTCAGTTGAAAGAGGGGTCT
AACAGGGAAAGGAAGTTCGAGGACGAGGTAGGACGACCGAGGAAAGGAATGGAGAGGGGAGACAG
TGCGGTGGCCGAAAAAGGATGATTAGAGGGCTTGCAATGGCTAGGGTTAGTGTAAAGAAGAAGAA
GACAAAAGTAAAATAATAAAATAGATTTAGGGTTTAAATGGGTGACACGATCGTGTAAGGCCCAT
GTTGGGCCACACGGCCATGTCACATATTCGTGTGGTTTCTTGCCAGCCCATGTGCATTTAAAAAT
GAAAGCCCAATTTTCACATGGCCTTGGACACGCCCGTATGTCCAGGCCGTGTATACCATACGGCC
ATGTGCGATCTCCTTCGATTCTCCCACACCCGTGTGACCTATCATATGCCCGTGTGCATTAAAAA
TTTAAGCCTAGCTTTCACACGCCTCAGACACACCCATGTGTCCAGGCCATGTGGTCCACACAGCC
GTGTTGCATGGCCATGTGCTACCCTTTTCGCTTCTCCCACACCCGTGTGGTCTCCCACACACGGC
CGTGTGTCTTGCCCATGTAACTATCTAACTTGTTTTAAATTTGAAAAATTAAACTCTAGTTTTCA
CACGGCCTAGGACACGCTCGTGTGTCCATGCTGTGTGATTCACACAATCGTGTCACATGCTCGTG
TAGACTCTTTTAGGCCATGTCTCCATCGATTTTTGGAAAAATTAAGTCTCAGGGTCCACACGGCC
AAGAACATGCCCGTGTGTCCTGGACGTATAGGTTACACGGTCGTGTCGCTTGGCCGTGTAACTCT
CTGTCGATTTCCTTAAAATTTAAAAACTAATTCATGAGATACACATGGCCAAGGACATGCCCGTG
TATCCA
Found at i:56196095 original size:50 final size:49
Alignment explanation
Indices: 56195976--56196247 Score: 192
Period size: 49 Copynumber: 5.7 Consensus size: 49
56195966 GGGATAAGAT
56195976 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCTTCATTGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCTTCATTGAG
* * *
56196025 GCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCGCTT-ATCTG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTAT--CTTCAT-TGAG
* * * * ** * *
56196075 GTCGATGCCATGTCCTAGACATGGTCTTACACAAAC-A-CAACGTTTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCTTCATTGAG
* * * * ** *
56196121 GTCGATG-CATGTCCCAAACA-CGTCTTACACTAGC-ACTCGTC-TCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCTTCATTGAG
* * * * *
56196167 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCTTCATTGAG
*
56196215 GCCGATG-CATGTCCCA-AGTAT-GTCTTACACTAG
1 GCCGATGCCATGTCCCAGA-CATGGTCTTACACTAG
56196248 TTCACACAAG
Statistics
Matches: 175, Mismatches: 35, Indels: 29
0.73 0.15 0.12
Matches are distributed among these distances:
44 12 0.07
45 13 0.07
46 29 0.17
47 24 0.14
48 22 0.13
49 37 0.21
50 33 0.19
51 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCTTCATTGAG
Found at i:56196240 original size:94 final size:94
Alignment explanation
Indices: 56195974--56196247 Score: 259
Period size: 94 Copynumber: 2.9 Consensus size: 94
56195964 ATGGGATAAG
* * * *
56195974 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCTTCATTGAGGCCGATGCCATGTC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCAT-AATGTGGCCGATG-CATGTC
* *
56196039 CC-AGACATAGTCTTACACTAGCTCTCGCTTATCT
63 CCAAG-CAT-GTCTTACACTAGCACTCGC-TATCA
* * * *** * * * * *
56196073 GTGTCGATGCCATGTCCTAGACATGGTCTTACAC-AAACACA-ACGTTTAGTCGATGCATGTCCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATA-ATGTGGCCGATGCATGTCCC
* * *
56196136 AAACACGTCTTACACTAGCACTCG-TCTCA
65 AAGCATGTCTTACACTAGCACTCGCTATCA
56196165 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTCATAATGTGGCCGATGCATGTCCC
*
56196230 AAGTATGTCTTACACTAG
65 AAGCATGTCTTACACTAG
56196248 TTCACACAAG
Statistics
Matches: 137, Mismatches: 33, Indels: 15
0.74 0.18 0.08
Matches are distributed among these distances:
92 34 0.25
94 51 0.37
95 12 0.09
96 8 0.06
97 1 0.01
99 31 0.23
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGCTCTCATAATGTGGCCGATGCATGTCCCA
AGCATGTCTTACACTAGCACTCGCTATCA
Found at i:56200691 original size:93 final size:93
Alignment explanation
Indices: 56200579--56200750 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
56200569 GCCCATAAGT
* *
56200579 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56200644 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
56200672 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56200737 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
56200751 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:56200746 original size:46 final size:46
Alignment explanation
Indices: 56200571--56200746 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
56200561 TGTAACCCGC
* * *
56200571 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
56200617 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
56200667 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
56200710 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
56200747 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:56203174 original size:30 final size:30
Alignment explanation
Indices: 56203130--56203218 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
56203120 CAAAGATAAC
56203130 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
56203159 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
56203189 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
56203219 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:56203178 original size:15 final size:15
Alignment explanation
Indices: 56203130--56203209 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
56203120 CAAAGATAAC
*
56203130 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
56203144 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
56203159 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
56203174 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
56203189 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
56203204 AAGAAA
1 AAGAAA
56203210 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:56203218 original size:15 final size:15
Alignment explanation
Indices: 56203141--56203218 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
56203131 AGAAAACCGA
56203141 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
56203156 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
56203170 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
56203185 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
56203201 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
56203216 ATA
1 ATA
56203219 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:56206278 original size:93 final size:93
Alignment explanation
Indices: 56206166--56206337 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
56206156 GCCCATAAGT
* *
56206166 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56206231 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
56206259 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
56206324 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
56206338 CAAATATCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:56206333 original size:46 final size:46
Alignment explanation
Indices: 56206158--56206333 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
56206148 TGTAACCCGC
* * *
56206158 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
56206204 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
56206254 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
56206297 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
56206334 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:56212138 original size:47 final size:46
Alignment explanation
Indices: 56212076--56212199 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 46
56212066 ACGTTTAGCC
* *
56212076 ATGCATGTCCTAGACATGTCTTACACTAGCACTCGTC-TCAA-T-GCTG
1 ATGCATGTCCCAGACATGTCTTACACTAGC-CTC-TCAT-AAGTGGCCG
56212122 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATAATGTGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCCTCTCATAA-GTGGCCG
56212170 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
56212200 TCACACAAGT
Statistics
Matches: 69, Mismatches: 2, Indels: 13
0.82 0.02 0.15
Matches are distributed among these distances:
45 4 0.06
46 19 0.28
47 28 0.41
48 18 0.26
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCCTCTCATAAGTGGCCG
Found at i:56218426 original size:52 final size:52
Alignment explanation
Indices: 56218348--56218447 Score: 182
Period size: 52 Copynumber: 1.9 Consensus size: 52
56218338 TACTGTAAAG
*
56218348 ATTATTTTGAGGTCTAAGATTATTACCCATATAATTTATTTTCTCATTATTC
1 ATTATTTTGAGGTCTAAGATTATTACCCATATAATTTATTTGCTCATTATTC
*
56218400 ATTATTTTGAGGTCTAGGATTATTACCCATATAATTTATTTGCTCATT
1 ATTATTTTGAGGTCTAAGATTATTACCCATATAATTTATTTGCTCATT
56218448 CTCCATGCTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (52 bp):
ATTATTTTGAGGTCTAAGATTATTACCCATATAATTTATTTGCTCATTATTC
Found at i:56234526 original size:17 final size:17
Alignment explanation
Indices: 56234504--56234539 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
56234494 ATACCTCATT
56234504 TATTTCTTAAAAATGCA
1 TATTTCTTAAAAATGCA
56234521 TATTTCTTAAAAATGCA
1 TATTTCTTAAAAATGCA
56234538 TA
1 TA
56234540 GATAATCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (17 bp):
TATTTCTTAAAAATGCA
Found at i:56234870 original size:19 final size:19
Alignment explanation
Indices: 56234846--56234900 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
56234836 CTTATTTTTC
56234846 TCCTTCTTTGTTC-TTCTTT
1 TCCTTCTTT-TTCTTTCTTT
*
56234865 TCCTTCTCTTTTCTTTTTTTT
1 TCCTTCT-TTTTC-TTTCTTT
*
56234886 TCCTTCTTTTCCTTT
1 TCCTTCTTTTTCTTT
56234901 TGGCTTACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 13 0.42
20 6 0.19
21 12 0.39
ACGTcount: A:0.00, C:0.27, G:0.02, T:0.71
Consensus pattern (19 bp):
TCCTTCTTTTTCTTTCTTT
Found at i:56234901 original size:19 final size:20
Alignment explanation
Indices: 56234809--56234901 Score: 57
Period size: 20 Copynumber: 4.7 Consensus size: 20
56234799 AATTTAAATT
* **
56234809 TTCTTTTCTTTTTTTTATTG
1 TTCTTTTCCTTTTTTTATCC
* *
56234829 TTCATTT-CTTATTTTTCTCC
1 TTCTTTTCCTT-TTTTTATCC
* *
56234849 TTCTTTGTTC-TTCTTT-TCC
1 TTCTTT-TCCTTTTTTTATCC
* *
56234868 TTCTCTTTTCTTTTTTTTTCC
1 TTCT-TTTCCTTTTTTTATCC
56234889 TTCTTTTCCTTTT
1 TTCTTTTCCTTTT
56234902 GGCTTACCTT
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
19 12 0.21
20 36 0.62
21 9 0.16
22 1 0.02
ACGTcount: A:0.03, C:0.22, G:0.02, T:0.73
Consensus pattern (20 bp):
TTCTTTTCCTTTTTTTATCC
Found at i:56236707 original size:12 final size:12
Alignment explanation
Indices: 56236690--56236715 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
56236680 ATTGAGACCG
56236690 GTACCCCATATA
1 GTACCCCATATA
56236702 GTACCCCATATA
1 GTACCCCATATA
56236714 GT
1 GT
56236716 CTCACTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.31, G:0.12, T:0.27
Consensus pattern (12 bp):
GTACCCCATATA
Found at i:56239018 original size:17 final size:19
Alignment explanation
Indices: 56238996--56239038 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
56238986 ATGGAAATAT
56238996 AATCTT-CA-ATGATAAGC
1 AATCTTACATATGATAAGC
* *
56239013 AATCTTAGATATGATAGGC
1 AATCTTACATATGATAAGC
56239032 AATCTTA
1 AATCTTA
56239039 GAAGATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (19 bp):
AATCTTACATATGATAAGC
Found at i:56239049 original size:22 final size:19
Alignment explanation
Indices: 56239004--56239040 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
56238994 ATAATCTTCA
56239004 ATGATAAGCAATCTTAGAT
1 ATGATAAGCAATCTTAGAT
*
56239023 ATGATAGGCAATCTTAGA
1 ATGATAAGCAATCTTAGA
56239041 AGATATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.30
Consensus pattern (19 bp):
ATGATAAGCAATCTTAGAT
Found at i:56252017 original size:39 final size:39
Alignment explanation
Indices: 56251974--56252086 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
56251964 GTGCGAATTG
56251974 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* *
56252013 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
* * *
56252052 TGATATCCGGGTTAAGTCTCGAAGGCATTTGTGCG
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
56252087 GGTTACCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 52 0.76
40 16 0.24
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCTA
Found at i:56257086 original size:78 final size:78
Alignment explanation
Indices: 56256978--56257251 Score: 433
Period size: 78 Copynumber: 3.5 Consensus size: 78
56256968 TCCATATTCT
* * *
56256978 ACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAAGTAGATCCAGGATGATTTGGC
1 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGC
56257043 ATCTCTGTATTAG
66 ATCTCTGTATTAG
* * *
56257056 ACGGGGAGCAGATCGAAGACACAGTAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGC
1 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGC
56257121 ATCTCTGTATTAG
66 ATCTCTGTATTAG
* *
56257134 ACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTCATTGAAGCAGATCCAAGATGATTTGG
1 ACGGAGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGG
*
56257198 CATTTCTGTATTAG
65 CATCTCTGTATTAG
* *
56257212 ACGGAGAGCACATCGAAGACATAGCAGATTTGACCTTCAT
1 ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
56257252 GTGTTTACAT
Statistics
Matches: 181, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
77 1 0.01
78 179 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
ACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGC
ATCTCTGTATTAG
Found at i:56257390 original size:44 final size:45
Alignment explanation
Indices: 56257191--56257464 Score: 268
Period size: 45 Copynumber: 6.1 Consensus size: 45
56257181 GATCCAAGAT
* * * *
56257191 GATTTGGCATTTCTGTATTAGACGGAGAGCACATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * *
56257238 GATTTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * * *
56257283 GATTTGGTATCTCTGTATTAGACGAGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * **
56257328 GATTTGGCATCTCTGTATTAGACGGGGAGCTGATTGAAGA-AGTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
56257372 GATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
56257417 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
56257462 GAT
1 GAT
56257465 ATCGCCTTCC
Statistics
Matches: 182, Mismatches: 38, Indels: 16
0.77 0.16 0.07
Matches are distributed among these distances:
43 1 0.01
44 42 0.23
45 109 0.60
46 4 0.02
47 21 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:56257390 original size:89 final size:89
Alignment explanation
Indices: 56257282--56257446 Score: 278
Period size: 89 Copynumber: 1.9 Consensus size: 89
56257272 CCAAGATGAC
* *
56257282 AGATTTGGTATCTCTGTATTAGACGAGG-AGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 AGATTTGGCATCTCTGTATTAGACG-GGAAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
56257346 TAGACGGGGAGCTGATTGAAGAAGT
65 TAGACGGGGAGCTGATTGAAGAAGT
* *
56257371 AGATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATT
1 AGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
56257436 AGACGGGGAGC
66 AGACGGGGAGC
56257447 AGATCAAAGA
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
88 2 0.03
89 69 0.97
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (89 bp):
AGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
AGACGGGGAGCTGATTGAAGAAGT
Found at i:56257490 original size:89 final size:89
Alignment explanation
Indices: 56257292--56257499 Score: 233
Period size: 89 Copynumber: 2.3 Consensus size: 89
56257282 AGATTTGGTA
* * * * *
56257292 TCTCTGTATTAGACGAGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAG
1 TCTCTGAATTAGACGCGAAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAG
* ** * * *
56257357 CTGATTGAAGAAGTAGATTTGGCG
66 CAGATCAAAGAAGCAGATTCGCCG
* *
56257381 TCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAG
1 TCTCTGAATTAGACGCGAAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAG
*
56257446 CAGATCAAAGATAGCAGATATCGCCT
66 CAGATCAAAGA-AGCAGAT-TCGCCG
*
56257472 TC-CTGAATT-G-CAGCGAAGCAGATTGAAG
1 TCTCTGAATTAGAC-GCGAAGCAGATCGAAG
56257500 CCGTCAAGAG
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
88 1 0.01
89 84 0.82
90 12 0.12
91 5 0.05
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (89 bp):
TCTCTGAATTAGACGCGAAGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAG
CAGATCAAAGAAGCAGATTCGCCG
Found at i:56257829 original size:17 final size:19
Alignment explanation
Indices: 56257807--56257849 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
56257797 ATGGAAATAT
*
56257807 AATCTT-CA-ATGATATGC
1 AATCTTACATATGATAGGC
*
56257824 AATCTTAGATATGATAGGC
1 AATCTTACATATGATAGGC
56257843 AATCTTA
1 AATCTTA
56257850 GAAGATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (19 bp):
AATCTTACATATGATAGGC
Found at i:56257860 original size:22 final size:19
Alignment explanation
Indices: 56257815--56257851 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
56257805 ATAATCTTCA
*
56257815 ATGATATGCAATCTTAGAT
1 ATGATAGGCAATCTTAGAT
56257834 ATGATAGGCAATCTTAGA
1 ATGATAGGCAATCTTAGA
56257852 AGATATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (19 bp):
ATGATAGGCAATCTTAGAT
Found at i:56258166 original size:18 final size:18
Alignment explanation
Indices: 56258141--56258177 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
56258131 TGTTTTCCTG
*
56258141 ATTTTTTTTATATATTTTA
1 ATTTTTTTAATA-ATTTTA
56258160 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
56258178 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:56277016 original size:12 final size:11
Alignment explanation
Indices: 56276982--56277020 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
56276972 TTTCATTATT
56276982 TCACACATTTA
1 TCACACATTTA
*
56276993 CCACACATTTA
1 TCACACATTTA
56277004 TCACACAATTTA
1 TCACAC-ATTTA
56277016 TCACA
1 TCACA
56277021 TTTCTCAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (11 bp):
TCACACATTTA
Found at i:56278052 original size:19 final size:20
Alignment explanation
Indices: 56278013--56278052 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
56278003 TTCATCACTT
*
56278013 AACATATCAAACTTCATATA
1 AACATATCAAACTTCAAATA
*
56278033 AACATATC-ATCTTCAAATA
1 AACATATCAAACTTCAAATA
56278052 A
1 A
56278053 TTCGTGAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (20 bp):
AACATATCAAACTTCAAATA
Found at i:56284398 original size:54 final size:54
Alignment explanation
Indices: 56284294--56284405 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
56284284 AGGAAGCGTC
* * *
56284294 CTGGTGGCTATGCCACAATTATCTGATTTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * * *
56284348 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTACCACATATATCTGTT
56284402 CTGG
1 CTGG
56284406 CAGCAATGTT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.68
55 16 0.32
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:56284400 original size:27 final size:26
Alignment explanation
Indices: 56284294--56284405 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
56284284 AGGAAGCGTC
*
56284294 CTGGTGGCTATGCCACAATTATCTGATT
1 CTGGTGGCTCTGCCAC-ATTATCTG-TT
56284322 -TGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
56284348 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* **
56284376 CTGGTGACTCTATCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
56284402 CTGG
1 CTGG
56284406 CAGCAATGTT
Statistics
Matches: 74, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
26 9 0.12
27 50 0.68
28 15 0.20
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:56299673 original size:28 final size:29
Alignment explanation
Indices: 56299606--56299706 Score: 116
Period size: 28 Copynumber: 3.5 Consensus size: 29
56299596 ATAGTGAATC
* *
56299606 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
*
56299635 CGCACACTTAGTGCTATAGAA-TCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
* * *
56299663 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATACAA-TTCAAACT
56299693 CGCACACTTAGTGC
1 CGCACACTTAGTGC
56299707 CAATCTTGTC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.37
29 19 0.30
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:56307796 original size:34 final size:33
Alignment explanation
Indices: 56307741--56307805 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 33
56307731 ATGTATTTTG
56307741 GATACTGTACTGAAATAGGCTAAGGCCCACATT
1 GATACTGTACTGAAATAGGCTAAGGCCCACATT
* * *
56307774 GATACTGTTACTGTATTGGGCTAAGGCCCACA
1 GATACTG-TACTGAAATAGGCTAAGGCCCACA
56307806 CTAATGTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 7 0.25
34 21 0.75
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (33 bp):
GATACTGTACTGAAATAGGCTAAGGCCCACATT
Found at i:56312543 original size:64 final size:64
Alignment explanation
Indices: 56312441--56312617 Score: 180
Period size: 64 Copynumber: 2.8 Consensus size: 64
56312431 GACACGACCA
* *
56312441 AGCCACACA-GGCGTGAGGGATCTCACATGGCA-TGGGGAGAAGTGAAGGAGATCACACACAGC-
1 AGCCACA-AGGGCGTGTGGGATCTCACATGGGAGT-GGGAGAAGTGAAGGAGATCACACACAGCT
56312503 C
64 C
* * ** * * * *
56312504 GAGCCACATGGGCGTGTGAGATCTCACATGGGAGTGGGAGAAGCAAAAGAGATTAGACACGGCTC
1 -AGCCACAAGGGCGTGTGGGATCTCACATGGGAGTGGGAGAAGTGAAGGAGATCACACACAGCTC
* * * *
56312569 AGCCATAAGGGTGTGTGGGATCTCACATGGGAGTGGAAGAGGTGAAGGA
1 AGCCACAAGGGCGTGTGGGATCTCACATGGGAGTGGGAGAAGTGAAGGA
56312618 AAACATACAC
Statistics
Matches: 91, Mismatches: 19, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
64 89 0.98
65 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.37, T:0.15
Consensus pattern (64 bp):
AGCCACAAGGGCGTGTGGGATCTCACATGGGAGTGGGAGAAGTGAAGGAGATCACACACAGCTC
Found at i:56312934 original size:9 final size:9
Alignment explanation
Indices: 56312917--56313011 Score: 54
Period size: 9 Copynumber: 10.4 Consensus size: 9
56312907 CCTTCTACCC
*
56312917 TTTTCTTTA
1 TTTTATTTA
56312926 TTTTATTTA
1 TTTTATTTA
56312935 -TTTATTTAA
1 TTTTATTT-A
* *
56312944 TTTTTTTGTT
1 TTTTATT-TA
56312954 TTTTATTTA
1 TTTTATTTA
56312963 TTTTTATTTCA
1 -TTTTATTT-A
* * *
56312974 -CTAATTTG
1 TTTTATTTA
*
56312982 TTTT-CTTA
1 TTTTATTTA
56312990 TTTTATTTA
1 TTTTATTTA
56312999 TTTGT-TTTA
1 TTT-TATTTA
56313008 TTTT
1 TTTT
56313012 TTATACTTAG
Statistics
Matches: 65, Mismatches: 13, Indels: 17
0.68 0.14 0.18
Matches are distributed among these distances:
8 14 0.22
9 29 0.45
10 20 0.31
11 2 0.03
ACGTcount: A:0.17, C:0.04, G:0.03, T:0.76
Consensus pattern (9 bp):
TTTTATTTA
Found at i:56312992 original size:21 final size:21
Alignment explanation
Indices: 56312966--56313006 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
56312956 TTATTTATTT
56312966 TTATTTCACTAATTTGTTTTC
1 TTATTTCACTAATTTGTTTTC
* * *
56312987 TTATTTTATTTATTTGTTTT
1 TTATTTCACTAATTTGTTTT
56313007 ATTTTTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.07, G:0.05, T:0.71
Consensus pattern (21 bp):
TTATTTCACTAATTTGTTTTC
Found at i:56314171 original size:16 final size:17
Alignment explanation
Indices: 56314137--56314174 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
56314127 ATTATTGTTC
56314137 AAAA-AAAAAAGGAAGA
1 AAAATAAAAAAGGAAGA
*
56314153 AAAATAAAAAATGAA-A
1 AAAATAAAAAAGGAAGA
56314169 AAAATA
1 AAAATA
56314175 TTGATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.82, C:0.00, G:0.11, T:0.08
Consensus pattern (17 bp):
AAAATAAAAAAGGAAGA
Found at i:56315649 original size:39 final size:39
Alignment explanation
Indices: 56315595--56315672 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
56315585 AAAGATGTTT
56315595 CAATTGATTAATCTAGAGTATTTTCTATCTCATTGGTTA
1 CAATTGATTAATCTAGAGTATTTTCTATCTCATTGGTTA
56315634 CAATTGATTAATCTAGAGTATTTTCTATCTCATTGGTTA
1 CAATTGATTAATCTAGAGTATTTTCTATCTCATTGGTTA
56315673 TCTTCGATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (39 bp):
CAATTGATTAATCTAGAGTATTTTCTATCTCATTGGTTA
Found at i:56318743 original size:13 final size:13
Alignment explanation
Indices: 56318725--56318758 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
56318715 GTTAAGTCTC
56318725 TGTTATGTACTCT
1 TGTTATGTACTCT
56318738 TGTTATGTACTCT
1 TGTTATGTACTCT
56318751 TGTTATGT
1 TGTTATGT
56318759 GTTCGCGGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.15, C:0.12, G:0.18, T:0.56
Consensus pattern (13 bp):
TGTTATGTACTCT
Found at i:56320123 original size:29 final size:29
Alignment explanation
Indices: 56320091--56320148 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
56320081 TATTTTTCTC
*
56320091 TTTTGTTC-TTTTCTTTTCCTTCTCTTTTG
1 TTTTGTTCTTTTTC-CTTCCTTCTCTTTTG
* *
56320120 TTTTTTTCTTTTTCCTTCCTTTTCTTTTG
1 TTTTGTTCTTTTTCCTTCCTTCTCTTTTG
56320149 GCTTACCGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 20 0.80
30 5 0.20
ACGTcount: A:0.00, C:0.21, G:0.05, T:0.74
Consensus pattern (29 bp):
TTTTGTTCTTTTTCCTTCCTTCTCTTTTG
Found at i:56320147 original size:24 final size:24
Alignment explanation
Indices: 56320086--56320147 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
56320076 TTTCTTATTT
*
56320086 TTCTCTTTTGTTCTTTTCTTTTCC
1 TTCTCTTTTGTTTTTTTCTTTTCC
56320110 TTCTCTTTTGTTTTTTTCTTTTTCC
1 TTCTCTTTTGTTTTTTTC-TTTTCC
*
56320135 TTC-CTTTTCTTTT
1 TTCTCTTTTGTTTT
56320148 GGCTTACCGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 26 0.74
25 9 0.26
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (24 bp):
TTCTCTTTTGTTTTTTTCTTTTCC
Found at i:56324249 original size:49 final size:49
Alignment explanation
Indices: 56324174--56324466 Score: 514
Period size: 49 Copynumber: 6.0 Consensus size: 49
56324164 TCACATTTTT
* * * *
56324174 ACACTTTCACATTCATCACATTGGCCATTCGGCCCTATCACATATATAC
1 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56324223 ACACCTTCACATTCATCGCATCGGCCATTAGGCCTTATCACATATATAC
1 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56324272 ACACCTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATAC
1 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56324321 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
56324370 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
56324419 ACACCTTCACATTCATCACATCCGCCATTAGGCCTTATCACATATATA
1 ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
56324467 TATCTCATAC
Statistics
Matches: 233, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 233 1.00
ACGTcount: A:0.30, C:0.33, G:0.08, T:0.29
Consensus pattern (49 bp):
ACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:56330729 original size:55 final size:53
Alignment explanation
Indices: 56330642--56330875 Score: 215
Period size: 55 Copynumber: 4.4 Consensus size: 53
56330632 ATTAGGGTTT
* *
56330642 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTATAAGGC
* * * * *
56330697 AAGTATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTCTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGT-T-TATAAGGC
* * * * * * * *
56330752 AAGGGTCCCATATAAGACCATGCCAAGGCATGGCACTGGTGAGTTGATAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
* * * * *
56330805 AAGGATACCATGTAAGACCATGTCGAGACATAGCAATGGTAAGTTT-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
*
56330854 AAGGATACCACGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
56330876 AAAAGTCATG
Statistics
Matches: 145, Mismatches: 32, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
49 21 0.14
52 2 0.01
53 43 0.30
54 9 0.06
55 70 0.48
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTATAAGGC
Found at i:56330848 original size:108 final size:110
Alignment explanation
Indices: 56330649--56330848 Score: 278
Period size: 108 Copynumber: 1.8 Consensus size: 110
56330639 TTTAAGGATA
* * ** * * *
56330649 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGTATATCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAACTGGTAAGGTTGATAAGACAAGGATACCATGTAAGA
* *
56330714 CCATGTCAAGACATGGCATTGATAAGTCTCTATAAGGAAAGGGTC
66 CCATGTCAAGACATAGCAATGATAAGTCTCTATAAGGAAAGGGTC
*
56330759 CCATATAAGACCATGCCAAGGCATGGC-ACTGGTGA-GTTGATAAGACAAGGATACCATGTAAGA
1 CCATATAAGACCATGCCAAGGCATGGCAACTGGTAAGGTTGATAAGACAAGGATACCATGTAAGA
* *
56330822 CCATGTCGAGACATAGCAATGGTAAGT
66 CCATGTCAAGACATAGCAATGATAAGT
56330849 TTCAAAAGGA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
108 46 0.59
109 6 0.08
110 26 0.33
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATATAAGACCATGCCAAGGCATGGCAACTGGTAAGGTTGATAAGACAAGGATACCATGTAAGA
CCATGTCAAGACATAGCAATGATAAGTCTCTATAAGGAAAGGGTC
Found at i:56331110 original size:16 final size:16
Alignment explanation
Indices: 56331089--56331119 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
56331079 ATAAATTTGA
56331089 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
56331105 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
56331120 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:56335229 original size:8 final size:8
Alignment explanation
Indices: 56335199--56335237 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
56335189 CGTCAACCCA
56335199 CTTTTCTGG
1 CTTTTC-GG
*
56335208 CTTTTCAG
1 CTTTTCGG
*
56335216 CCTTTCGG
1 CTTTTCGG
56335224 CTTTTCGG
1 CTTTTCGG
56335232 CTTTTC
1 CTTTTC
56335238 AGCCTTTGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
8 20 0.77
9 6 0.23
ACGTcount: A:0.03, C:0.28, G:0.18, T:0.51
Consensus pattern (8 bp):
CTTTTCGG
Found at i:56337993 original size:30 final size:30
Alignment explanation
Indices: 56337938--56338097 Score: 204
Period size: 29 Copynumber: 5.5 Consensus size: 30
56337928 ATAGTGAATC
56337938 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
56337967 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
56337997 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
56338026 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * * *
56338054 CGCACATTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
56338084 CGCACACTTAGTGC
1 CGCACACTTAGTGC
56338098 CAATCTTGTC
Statistics
Matches: 118, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.19
29 47 0.40
30 46 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.34
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:56340493 original size:40 final size:40
Alignment explanation
Indices: 56340381--56340533 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
56340371 GGATATAGCG
* * * * ***
56340381 ACTCGCTCAAAAGCCTTCGGGACATAGCCCGGTTATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* * *
56340421 GCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTGGGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
* **
56340461 ACTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGATATGGGA
*
56340501 ACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
56340534 CATCATTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 3 0.03
40 78 0.85
41 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGGA
Found at i:56344353 original size:40 final size:39
Alignment explanation
Indices: 56344303--56344453 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
56344293 ATAAGCATGT
** *
56344303 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * *
56344343 GCACGAATGCCTTCGGGTCTTAGCCTGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* * ***
56344383 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCTA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
* *
56344423 GCATAATTGTCTTCGGGGT-TTAGCCCGGATA
1 GCACAA-TGCCTTC-GGGTCTTAGCCCGGATA
56344454 TCATTCAATT
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.02
40 87 0.94
41 4 0.04
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACCACTA
Found at i:56344437 original size:80 final size:80
Alignment explanation
Indices: 56344303--56344454 Score: 191
Period size: 80 Copynumber: 1.9 Consensus size: 80
56344293 ATAAGCATGT
* *
56344303 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTC-GGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTAGCACGAATGCCTTCGGGGT-TTAGC
*
56344367 CTGGATATAGCCACTA
65 CCGGATATAGCCACTA
* * ** * *
56344383 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCTAGCA-TAATTGTCTTCGGGGTTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTAGCACGAA-TGCCTTCGGGGTTTAGC
56344447 CCGGATAT
65 CCGGATAT
56344455 CATTCAATTT
Statistics
Matches: 61, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
79 2 0.03
80 55 0.90
81 4 0.07
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTAGCACGAATGCCTTCGGGGTTTAGCC
CGGATATAGCCACTA
Found at i:56357707 original size:40 final size:40
Alignment explanation
Indices: 56357652--56357742 Score: 130
Period size: 40 Copynumber: 2.3 Consensus size: 40
56357642 GGTGTGTAGA
* * *
56357652 GGCTAAGGCCCTAATTTATATCTGCA-TTTGTATCTGATTG
1 GGCTAAGGCCCTAATTTATATCTG-ATTTTGCATCTAAATG
*
56357692 GGCTAAAGCCCTAATTTATATCTGATTTTGCATCTAAATG
1 GGCTAAGGCCCTAATTTATATCTGATTTTGCATCTAAATG
56357732 GGCTAAGGCCC
1 GGCTAAGGCCC
56357743 AAACTAATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
39 1 0.02
40 44 0.98
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (40 bp):
GGCTAAGGCCCTAATTTATATCTGATTTTGCATCTAAATG
Found at i:56360092 original size:142 final size:142
Alignment explanation
Indices: 56359604--56361009 Score: 1325
Period size: 142 Copynumber: 9.9 Consensus size: 142
56359594 GGGGTGTTAC
* *
56359604 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAAGCTCTTAAAATTTTATACTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * *
56359669 GATTCTATAACCGACTTTGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAAAT
66 GATTCTGTAACTGACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATT-AAAAAAAT
*
56359734 CATAAAACACAAG
130 CATAAAACACGAG
* *
56359747 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTATTAAGAATTTATACTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * ** * * * *
56359812 GATTCCGTAACAGACATT-GCCTCAAAATTCAAGCTTCAATATTTAAAAATTAAATCAAAGAGAA
66 GATTCTGTAACTGAC-TTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAA-AAAA
* *
56359876 TCAGAAGACACGAG
129 TCATAAAACACGAG
* * * * * * * *
56359890 AACTTAGATATGTATCACATTGAAAATTTCCATTTTAACCACTTAAAAATTTATATTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
** * ** *
56359955 GATAATGTAACTGACTTGGCCTTGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAATAATC
66 GATTCTGTAACTGACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATC
*
56360020 ATAAAACACAAG
131 ATAAAACACGAG
*
56360032 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATCTATACTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * *** * * * * * *
56360097 AATTTTATAACCGACTTCGAAACGAAATTCGAGTTTCAATATTTTAAAATGAAATTAAAGAGAAT
66 GATTCTGTAACTGACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAA-AAAAT
* *
56360162 CATAAGACATGAG
130 CATAAAACACGAG
* ** * * * * * *
56360175 AACTTCACTATGCATCATATTGTAAATTTCCATTTTAACCACTTAAAAAATTCTACTTTACCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* **** * * *
56360240 AATT-TCGTAA-TGGACTTCGCCTCAAAATTTGGGTTTCAATATTTAAACAT-AAACTAAAAACA
66 GATTCT-GTAACT-GACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAA-A
** *
56360302 ATCATACGACATGAG
128 ATCATAAAACACGAG
* ** * * * *
56360317 AACTTCACTATGCATCACATTGTAAATTTTCATTTTAACTTCTTAAAATTTTATACTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * *
56360382 GATTCTTTAATTGACTTCGCCTCGAAATTTGAAA-TTTAATATTTAAAAATAAAATTAAAAAAAT
66 GATTCTGTAACTGACTTCGCCTC-AAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAAT
**
56360446 CATAAAACAATAG
130 CATAAAACACGAG
* * * * *
56360459 AAGTTTGCTACGTATCACATGATAAATTTCCATTTTAACCT-TTTAAACTTTATACTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
*
56360523 GAATCTGTAAC-GACGTT-GCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTATAAAAAA
66 GATTCTGTAACTGAC-TTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTA-AAAAAA
56360586 TCAT-AAACACGAG
129 TCATAAAACACGAG
* * * * * *
56360599 AAGTTTTCAATGCATCACAAGGTAAATTTCCATTTTAACCACTTAAAATTTTATATTTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * * * *
56360664 AATTCTGTCA-TGGAGTTCACCTCAAAATTCGAGTTTCAATATTTAAAAAT-AAATTAAAAACAA
66 GATTCTGTAACT-GACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAA-AA
* *
56360727 CCATAAGACACGAG
129 TCATAAAACACGAG
* ** * * * * * *
56360741 AACTTCACTATGTATTACATTGTAAATTTCCATTTTAGCCTCTTAAAAATGTATAATTTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * * **
56360806 TATTCTATAACCGACTTAGCCTCAAAATTCAAA---T--TATCTAAATTTGAAATTAAAAAAATC
66 GATTCTGTAACTGACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATC
*
56360866 ATAAAACATGAG
131 ATAAAACACGAG
* * * * * * *
56360878 ATGTTTGCTATACATCACATGATAAATTTCCGTCTTAACCTCTTAAATATTTATACTGTATCTTT
1 AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * * * *
56360943 GATTTTTTTTAAC-CAATGTTGCCTCGAAATTCAAATTTTAATATTTAAAAATAAAATTTAAAAA
66 GA--TTCTGTAACTGACT-TCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAA-TTAAAAA
56361007 AAT
127 AAT
56361010 GCAAAGCACA
Statistics
Matches: 1023, Mismatches: 209, Indels: 60
0.79 0.16 0.05
Matches are distributed among these distances:
137 71 0.07
138 12 0.01
139 30 0.03
140 75 0.07
141 82 0.08
142 389 0.38
143 341 0.33
144 13 0.01
145 10 0.01
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.37
Consensus pattern (142 bp):
AAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
GATTCTGTAACTGACTTCGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATC
ATAAAACACGAG
Found at i:56360137 original size:285 final size:284
Alignment explanation
Indices: 56359611--56360948 Score: 1364
Period size: 285 Copynumber: 4.7 Consensus size: 284
56359601 TACAAGTTTG
* * * * * * *
56359611 CTATGCATCACATGGTAAATTTCCATTTTAAGCTCTTAAAATTTTATACTTTATCTTTGATTCTA
1 CTATGTATCACATTGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTTTGATACTG
*
56359676 TAACCGACTTTGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAAATCATAAAA
66 TAACCGAC-TTGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATT-AAAAAAATCATAAAA
* * *
56359741 CACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTATTAAGAATTTATACTTT
129 CACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTT
** * * * *
56359806 ATCTTTGATTCCGTAACAGACATT-GCCTCAAAATTCAAGCTTCAATATTTAAAAATTAAATCAA
194 ATCTTTGATTTTGTAACAGAC-TTCGACTCAAAATTCGAGTTTCAATATTTAAAAATTAAATTAA
*
56359870 AGAGAATCAGAAGACACGAGAACTT-A
258 AGAGAATCATAAGACACGAGAACTTCA
* * * *
56359896 GATATGTATCACATTGAAAATTTCCATTTTAACCACTTAAAAATTTATATTTTATCTTTGATAAT
1 -CTATGTATCACATTGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTTTGATACT
* ** *
56359961 GTAACTGACTTGGCCTTGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAATAATCATAAAA
65 GTAACCGACTT-GCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAA
* *
56360026 CACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATCTATACTTT
129 CACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTT
* * * ** * * *
56360091 ATCTTTAATTTTATAACCGACTTCGAAACGAAATTCGAGTTTCAATATTTTAAAATGAAATTAAA
194 ATCTTTGATTTTGTAACAGACTTCGACTCAAAATTCGAGTTTCAATATTTAAAAATTAAATTAAA
*
56360156 GAGAATCATAAGACATGAGAACTTCA
259 GAGAATCATAAGACACGAGAACTTCA
* * * * * * *
56360182 CTATGCATCATATTGTAAATTTCCATTTTAACCACTTAAAAAATTCTACTTTACCTTTAAT-TTC
1 CTATGTATCACATTGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTTTGATACT-
** **** * * * **
56360246 GTAATGGACTTCGCCTCAAAATTTGGGTTTCAATATTTAAACAT-AAACTAAAAACAATCATACG
65 GTAACCGACTT-GCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAA-AATCATAAA
* * ** * * * *
56360310 ACATGAGAACTTCACTATGCATCACATTGTAAATTTTCATTTTAACTTCTTAAAATTTTATACTT
128 ACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTT
** * * * * *
56360375 TATCTTTGATTCTT-TAATTGACTTCGCCTCGAAATTTGAAATTT-AATATTTAAAAATAAAATT
193 TATCTTTGATT-TTGTAACAGACTTCGACTCAAAATTCG-AGTTTCAATATTTAAAAATTAAATT
* * ** * **
56360438 AAA-AAAATCATAAAACAATAGAAGTTTG
256 AAAGAGAATCATAAGACACGAGAACTTCA
* * * *
56360466 CTACGTATCACA-TGATAAATTTCCATTTTAACC-TTTTAAACTTTATACTTTATCTTTGA-ATC
1 CTATGTATCACATTG-TAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTTTGATA-C
56360528 TGTAA-CGACGTTGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTATAAAAAATCAT-A
64 TGTAACCGAC-TTGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTA-AAAAAATCATAA
* * * * * *
56360591 AACACGAGAAGTTTTCAATGCATCACAAGGTAAATTTCCATTTTAACCACTTAAAATTTTATATT
127 AACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT
* * * ** *
56360656 TTATCTTTAATTCTGTCATGGAGTTC-ACCTCAAAATTCGAGTTTCAATATTTAAAAA-TAAATT
192 TTATCTTTGATTTTGTAACAGACTTCGA-CTCAAAATTCGAGTTTCAATATTTAAAAATTAAATT
* * *
56360719 AAAAACAACCATAAGACACGAGAACTTCA
256 AAAGAGAATCATAAGACACGAGAACTTCA
* * * * * * * *
56360748 CTATGTATTACATTGTAAATTTCCATTTTAGCCTCTTAAAAATGTATAATTTATCTTTTATTCTA
1 CTATGTATCACATTGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTTTGATACTG
* **
56360813 TAACCGACTTAGCCTCAAAATTCAAA---T--TATCTAAATTTGAAATTAAAAAAATCATAAAAC
66 TAACCGACTT-GCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAAC
* * * * * * * *
56360873 ATGAGATGTTTGCTATACATCACATGATAAATTTCCGTCTTAACCTCTTAAATATTTATACTGTA
130 ACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTA
56360938 TCTTTGATTTT
195 TCTTTGATTTT
56360949 TTTTAACCAA
Statistics
Matches: 864, Mismatches: 165, Indels: 53
0.80 0.15 0.05
Matches are distributed among these distances:
278 10 0.01
279 79 0.09
281 14 0.02
282 166 0.19
283 67 0.08
284 80 0.09
285 343 0.40
286 105 0.12
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (284 bp):
CTATGTATCACATTGTAAATTTCCATTTTAACCACTTAAAAATTTATACTTTATCTTTGATACTG
TAACCGACTTGCCTCAAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACA
CGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
CTTTGATTTTGTAACAGACTTCGACTCAAAATTCGAGTTTCAATATTTAAAAATTAAATTAAAGA
GAATCATAAGACACGAGAACTTCA
Found at i:56362391 original size:6 final size:6
Alignment explanation
Indices: 56362346--56362374 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
56362336 TAATTTAGTC
56362346 ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTT
56362375 TATTGCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTTA
Found at i:56364474 original size:18 final size:18
Alignment explanation
Indices: 56364453--56364488 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
56364443 ATTGAAGATG
56364453 TTCTCATTAAAATTGATA
1 TTCTCATTAAAATTGATA
*
56364471 TTCTCGTTAAAATTGATA
1 TTCTCATTAAAATTGATA
56364489 AATTCATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.44
Consensus pattern (18 bp):
TTCTCATTAAAATTGATA
Found at i:56364727 original size:35 final size:35
Alignment explanation
Indices: 56364688--56364758 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
56364678 TAGAAATGAT
56364688 TATACAAGTTCTATTAATATAAATAACATTATGGA
1 TATACAAGTTCTATTAATATAAATAACATTATGGA
*
56364723 TATACAAGTTCTGTTAATATAAATAACATTATGGA
1 TATACAAGTTCTATTAATATAAATAACATTATGGA
56364758 T
1 T
56364759 CAAACTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.38
Consensus pattern (35 bp):
TATACAAGTTCTATTAATATAAATAACATTATGGA
Found at i:56365844 original size:27 final size:27
Alignment explanation
Indices: 56365622--56365843 Score: 309
Period size: 27 Copynumber: 8.2 Consensus size: 27
56365612 TTAGTTTACG
* **
56365622 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
56365649 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
56365676 AAATTACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
56365703 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
56365730 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
56365757 AAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
56365784 AAATTACCAAAATACTCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
56365811 AAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
56365838 AAATTA
1 AAATTA
56365844 TTGAAATACC
Statistics
Matches: 171, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:56365851 original size:54 final size:53
Alignment explanation
Indices: 56365622--56365873 Score: 306
Period size: 54 Copynumber: 4.7 Consensus size: 53
56365612 TTAGTTTACG
** **
56365622 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
* * * * **
56365676 AAATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCC-TGGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
*
56365730 AAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
*
56365784 AAATTACCAAAATACTCCTGGTTTGTAAAATTATCAAAATACCCCTAATTTGTA
1 AAATTACCAAAATAC-CCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
*** **
56365838 AAATTATTGAAATACCCTCGACTTGTAAAATTACCA
1 AAATTACCAAAATACCCT-GGTTTGTAAAATTACCA
56365874 GAGTACCATT
Statistics
Matches: 178, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
53 4 0.02
54 171 0.96
55 3 0.02
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (53 bp):
AAATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTA
Found at i:56365863 original size:27 final size:27
Alignment explanation
Indices: 56365648--56365870 Score: 153
Period size: 27 Copynumber: 8.3 Consensus size: 27
56365638 CTTGGTTTAC
* ***
56365648 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
* * *** *
56365675 AAAATTA-CTAGAATACCCTTGGTTTAT
1 AAAATTATC-AAAATACCCCTAACTTGT
* * ***
56365702 AAAATCACCAAAATACCCCTGGTTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
* ***
56365729 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
*
56365756 AAAATTATCAAAATACCCCTAATTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
* * ***
56365783 AAAATTACCAAAATACTCCTGGTTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
*
56365810 AAAATTATCAAAATACCCCTAATTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
** *
56365837 AAAATTATTGAAATA-CCCTCGACTTGT
1 AAAATTATCAAAATACCCCT-AACTTGT
56365864 AAAATTA
1 AAAATTA
56365871 CCAGAGTACC
Statistics
Matches: 170, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 5 0.03
27 164 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTATCAAAATACCCCTAACTTGT
Found at i:56365897 original size:81 final size:80
Alignment explanation
Indices: 56365622--56365873 Score: 317
Period size: 81 Copynumber: 3.1 Consensus size: 80
56365612 TTAGTTTACG
* * *
56365622 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAGA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTATTA-A
* * *
56365687 ATACCCTTGGTTTATA
65 ATACCCTCGATTTGTA
* * *
56365703 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTAT-TAA
*
56365768 ATACCC-CTAATTTGTA
65 ATACCCTC-GATTTGTA
* * * **
56365784 AAATTACCAAAATACTCCTGGTTTGTAAAATTATCAAAATACCCCTAATTTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTATT-AA
*
56365849 ATACCCTCGACTTGTA
65 ATACCCTCGATTTGTA
56365865 AAATTACCA
1 AAATTACCA
56365874 GAGTACCATT
Statistics
Matches: 149, Mismatches: 18, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
81 147 0.99
82 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTATTAAA
TACCCTCGATTTGTA
Found at i:56365950 original size:27 final size:27
Alignment explanation
Indices: 56365927--56366304 Score: 477
Period size: 27 Copynumber: 14.0 Consensus size: 27
56365917 CAAAATTATT
56365927 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
56365954 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
56365981 GAAATACTCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
56366008 GAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
56366035 AAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
56366062 GAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
56366089 GAAATACCCCTGTAGGATAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
56366116 GAAATACCCCTATAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
56366143 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
56366170 AAAATACCCATGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
56366197 GAAACACCCTTGTAGGGTAGAAATACA
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
56366224 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
56366251 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
56366278 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
56366305 ATTTTACCCC
Statistics
Matches: 305, Mismatches: 46, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 305 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:56366573 original size:2 final size:2
Alignment explanation
Indices: 56366566--56366593 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
56366556 GCTTCGCCAC
56366566 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56366594 CTGTCCTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:56366629 original size:27 final size:26
Alignment explanation
Indices: 56366586--56366709 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 26
56366576 ATATATATAT
* *
56366586 ATATATATCTGTCCTGGTGGCTATGCC
1 ATAT-TATCTGTTCTGGTGGCTCTGCC
*
56366613 ATAATTATCTGATCTGGTGGCTCTGCC
1 AT-ATTATCTGTTCTGGTGGCTCTGCC
56366640 ATATATATCTGTTCTGGTGGCTCTGCC
1 ATAT-TATCTGTTCTGGTGGCTCTGCC
* * *
56366667 ACGATTATCTGTTCTGGTGACTCTGTC
1 A-TATTATCTGTTCTGGTGGCTCTGCC
*
56366694 ACATTATCTGTTCTGG
1 ATATTATCTGTTCTGG
56366710 CAGCCATGCT
Statistics
Matches: 86, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
26 16 0.19
27 66 0.77
28 4 0.05
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.40
Consensus pattern (26 bp):
ATATTATCTGTTCTGGTGGCTCTGCC
Found at i:56366648 original size:54 final size:54
Alignment explanation
Indices: 56366586--56366709 Score: 169
Period size: 54 Copynumber: 2.3 Consensus size: 54
56366576 ATATATATAT
* * *
56366586 ATATATATCTGTCCTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTCTGCC
1 ATATATATCTGTTCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCC
* * * *
56366640 ATATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTTCTGGTGACTCTGTC
1 ATATATATCTGTTCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCC
*
56366694 ACAT-TATCTGTTCTGG
1 ATATATATCTGTTCTGG
56366710 CAGCCATGCT
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
53 12 0.19
54 50 0.81
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.40
Consensus pattern (54 bp):
ATATATATCTGTTCTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCC
Found at i:56366867 original size:6 final size:6
Alignment explanation
Indices: 56366828--56366927 Score: 89
Period size: 6 Copynumber: 16.3 Consensus size: 6
56366818 TTGCATTCAC
* * *
56366828 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
56366877 ATTCTG ATTCTG -TCACCTG ATTCTG ATTTTG ATTCTG ATTCTTG -TTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTC-TG ATTCTG
56366926 AT
1 AT
56366928 AATGTTTCTT
Statistics
Matches: 76, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
5 5 0.07
6 61 0.80
7 8 0.11
8 2 0.03
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:56366889 original size:43 final size:43
Alignment explanation
Indices: 56366828--56366927 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
56366818 TTGCATTCAC
* * *
56366828 ATTCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTG
* *
56366871 ATTCTGATTCTGATTCTGTCACCTGATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTG
56366914 ATTCTTG-TTCTGAT
1 ATTC-TGATTCTGAT
56366928 AATGTTTCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (43 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTGATTCTG
Found at i:56366936 original size:18 final size:17
Alignment explanation
Indices: 56366915--56366948 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
56366905 TTGATTCTGA
*
56366915 TTCTTGTTCTGATAATGT
1 TTCTTATTCTG-TAATGT
56366933 TTCTTATTCTGTAATG
1 TTCTTATTCTGTAATG
56366949 GGTTAAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (17 bp):
TTCTTATTCTGTAATGT
Found at i:56369192 original size:5 final size:5
Alignment explanation
Indices: 56369182--56369261 Score: 60
Period size: 5 Copynumber: 15.8 Consensus size: 5
56369172 CCTTTTTCCC
* *
56369182 TATTT TA-TT T-TTT TATTT TATTT TATTT TATCT TATTT TCGTTT TA-TT
1 TATTT TATTT TATTT TATTT TATTT TATTT TATTT TATTT T-ATTT TATTT
*
56369230 T-CTT TATCTT TATTTT TATTT TGATTAT TATT
1 TATTT TAT-TT TA-TTT TATTT T-ATT-T TATT
56369262 ATTCATTTCA
Statistics
Matches: 61, Mismatches: 5, Indels: 17
0.73 0.06 0.20
Matches are distributed among these distances:
4 12 0.20
5 28 0.46
6 18 0.30
7 3 0.05
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (5 bp):
TATTT
Found at i:56369321 original size:15 final size:16
Alignment explanation
Indices: 56369301--56369333 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
56369291 TTCTTAGTTA
56369301 TTCTCTTTAGT-TGTT
1 TTCTCTTTAGTCTGTT
56369316 TTCTCTTTAGTCTGTT
1 TTCTCTTTAGTCTGTT
56369332 TT
1 TT
56369334 TGTGCTGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.06, C:0.15, G:0.12, T:0.67
Consensus pattern (16 bp):
TTCTCTTTAGTCTGTT
Found at i:56370878 original size:6 final size:6
Alignment explanation
Indices: 56370864--56370910 Score: 67
Period size: 6 Copynumber: 7.7 Consensus size: 6
56370854 TTCTTTTATT
* *
56370864 TTTTGTA TTTTTA TTTTTA TTTTTA TTTTTA TGTTCA TTTTTA TTTT
1 TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
56370911 CTTAAACCTA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
6 32 0.89
7 4 0.11
ACGTcount: A:0.15, C:0.02, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Done.