Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 189 of 328
Found at i:56374227 original size:143 final size:141
Alignment explanation
Indices: 56373767--56375417 Score: 1328
Period size: 143 Copynumber: 11.8 Consensus size: 141
56373757 GTGATCATCA
* * * * **
56373767 CACATGGTAAATTTCTATTTTAACCTCTTAAAATTTTATACTTTATCTATAATTCCATAA-CAAG
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAA-
* * * * * *
56373831 CTTTGCCTCAAAATTCGAGTTTTGATTATTTAAAAATGAAATTAAAAGGAATCATAAGACACGAG
65 -TTTGCCTCAAAATTCGAATTTT-AATATTTAAAAATGAAATTAAAA-AAATAATAAAACACAAG
* *
56373896 AACTTCGCTATGCAT
127 AAGTTTGCTATGCAT
* * * * * * * *
56373911 CACATTGTAAATATCCATTTTAACCTCTTACAAATTTATTCTTTATATTTGATTTTGTAACTGAC
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAAC-CAA
* ** * * * *
56373976 TTGGCCTTGAAATTCGAATTTTAATAATTAGAAATGAAATTTAAAAAAT-ATAAAACACGAGAAG
65 TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAAG
56374040 TTTGCTATGCAT
130 TTTGCTATGCAT
* ** * * *
56374052 CACATGATAAATTTTTATTTTAACATCTTAAAACTTTATACTTTGTCTTTGATTCTGTAACCAAT
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAAT
* * ** *
56374117 GTTGCCTTC-AAATTCGAATTTTAAAATTTAAAAAT-AATATTTCAAAAAAGCATAAAACACAAT
66 -TTGCC-TCAAAATTCGAATTTTAATATTTAAAAATGAA-A-TTAAAAAAATAATAAAACACAAG
* * *
56374180 TAGTTTTCCATGCAT
127 AAGTTTGCTATGCAT
* ** * * * *
56374195 CACATGGTAAATTTCAATTTTAACCTAATAAAAATTTATACTTTATCTATAATTCTAG-ATCAAA
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCT-GTAACCAA
* * * *
56374259 CTTTGCCACAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATAATAAGACACAAGA
65 -TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATAATAAAACACAAGA
* *
56374324 ACTTCGCTATGCAT
128 AGTTTGCTATGCAT
* * * * *
56374338 CACATTGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATATTTGATTCTATAACCAAC
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAAT
* * *
56374403 TT-CGCTGCAAAATTCAAATTTTAATATTTAAAAATGAAA-TAAAAAAGTAATAAAACACGAGAA
66 TTGC-CT-CAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAA
*
56374466 GTTCAG-TATGCAT
129 GTT-TGCTATGCAT
* * * * **
56374479 CACATGGTAAATTTCCATTTTAATCACTTAAAAATTTATACTTTATATTTAAATTC-GTAATGGA
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT-GATTCTGTAA-CCA
* * ** * * **
56374543 CTTTGGCTCAAAATTCGTGTTTCAATATTTAAAAA-G----------AATCATAAGGCACAAGAA
64 ATTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAA
* *
56374597 CTTCGCTATGCAT
129 GTTTGCTATGCAT
* * **
56374610 CAGATTGTAAATTTCCATTTTAACCAT-TTAAAAATTTATACTTTATCTTTGATTCTGTAACTGA
1 CACATGGTAAATTTCCATTTTAACC-TCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAA
* * * *
56374674 TTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATCAAATTAAAAAAATAATAAAACACGAGAA
65 TTT-GCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAA
56374739 GTTTGCTATGCAT
129 GTTTGCTATGCAT
* *
56374752 CCCATGATAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTTATCTTTGATTCTGTAACCGA
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATAC-TTTATCTTTGATTCTGTAACC-A
** ** * * * * * * **
56374817 CGTTGCCTTGAAGTTCAAATTTTAATATTTAAATATAAAATTAAAAAAATAAGAAAA-AAAATTA
64 ATTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAA
*
56374881 GTTTTCTATGCAT
129 GTTTGCTATGCAT
* * * *
56374894 CAC-TCGGTAAATTTCCATTTTAA-CTGCTTAAAAAATTATACTTTATCTTTAATTCTATAACGA
1 CACAT-GGTAAATTTCCATTTTAACCT-CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCA
* * * * * * **
56374957 ACTTCGACTCAAAATTAGAGTTTTAATATTTAAAAATGAAATTGAAAAAAAATCATAAAGCGTAA
64 A-TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATT--AAAAAAATAATAAAACACAA
* *
56375022 GAACTTCGCTATGCAT
126 GAAGTTTGCTATGCAT
* * *
56375038 CACATGGTAAATTTTCATTTTGACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAGCCGAA
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACC-AA
* * * * ** *
56375103 TTAGCCTCGAAATTCGAATTTTAATATTTAAAAATGAATTTAAAAAGAT--T----CTTAGGACA
65 TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGA-A
*
56375162 --TTAC-A--CAT
129 GTTTGCTATGCAT
* * * * ** * *
56375170 CACATTGTAAATTTTCA-TCTAACTTCTTAAAAATTTATACTGCATCTTTGATTTTGTAACTAAC
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAA-
* * * * * * * * *
56375234 TTCGACTCGAAATTTGAATTTTAATACTTAAAAATAAAATT-AAAAATTCATAAAACAAAAGAAG
65 TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAAG
*
56375298 TTTGTTATGCAT
130 TTTGCTATGCAT
* * * * * **
56375310 CACATGGT-GATTTCCATTTTAACCT-TATAGAAGTTTATACTTTATCTATAATTCTGTAATGGA
1 CACATGGTAAATTTCCATTTTAACCTCT-TAAAAATTTATACTTTATCTTTGATTCTGTAA-CCA
* * * *
56375373 CTTTGCCTCAAAATTCGAGTTTGAATATTTAAAAATGAAGTTAAA
64 ATTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAA
56375418 GAGAATCATA
Statistics
Matches: 1190, Mismatches: 254, Indels: 129
0.76 0.16 0.08
Matches are distributed among these distances:
130 15 0.01
131 166 0.14
132 20 0.02
134 1 0.00
135 3 0.00
136 9 0.01
137 3 0.00
138 1 0.00
139 7 0.01
140 80 0.07
141 253 0.21
142 153 0.13
143 303 0.25
144 170 0.14
145 5 0.00
146 1 0.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.37
Consensus pattern (141 bp):
CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAAT
TTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAAACACAAGAAGT
TTGCTATGCAT
Found at i:56374706 original size:131 final size:131
Alignment explanation
Indices: 56374299--56375141 Score: 563
Period size: 141 Copynumber: 6.1 Consensus size: 131
56374289 AAAAATGAAA
*
56374299 TTAAAAAGAATAATAAGACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCT
1 TTAAAAAGAATAATAAAACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCT
* * * *
56374364 CTTAAAATTTTATACTTTATATTTGATTCTATAACCAAC-TTCGCTGCAAAATTCAAATTTTAAT
66 CTTAAAAATTTATACTTTATATTTGATTCTGTAACCGACTTTGGCT-CAAAATTCAAATTTTAAT
56374428 AT
130 AT
* * *
56374430 TTAAAAATGAAATAAAAAAGTAATAAAACACGAGAAGTTCAG-TATGCATCACATGGTAAATTTC
1 TTAAAAA-G--------AA-TAATAAAACACAAGAACTTC-GCTATGCATCACATTGTAAATTTC
* * * **
56374494 CATTTTAATCACTTAAAAATTTATACTTTATATTTAAATTC-GTAATGGACTTTGGCTCAAAATT
55 CATTTTAACCTCTTAAAAATTTATACTTTATATTT-GATTCTGTAACCGACTTTGGCTCAAAATT
*** *
56374558 CGTGTTTCAATAT
119 CAAATTTTAATAT
* ** *
56374571 TTAAAAAGAATCATAAGGCACAAGAACTTCGCTATGCATCAGATTGTAAATTTCCATTTTAACCA
1 TTAAAAAGAATAATAAAACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACC-
* * *
56374636 T-TTAAAAATTTATACTTTATCTTTGATTCTGTAACTGA-TTTGGCCTCGAAATTCAAATTTTAA
65 TCTTAAAAATTTATACTTTATATTTGATTCTGTAACCGACTTTGG-CTCAAAATTCAAATTTTAA
56374699 TATT
129 TA-T
* * * * *
56374703 TAAAAATCAAATTAAAAAAATAATAAAACACGAGAAGTTTGCTATGCATCCCA-TGATAAATTTC
1 T-----T---A--AAAAGAATAATAAAACACAAGAACTTCGCTATGCATCACATTG-TAAATTTC
* * * ** *
56374767 CATTTTAACCTCTTAAAAATTTATACTTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAGTT
55 CATTTTAACCTCTTAAAAATTTATAC-TTTATATTTGATTCTGTAACCGACTTTGGCTCAAAATT
56374832 CAAATTTTAATAT
119 CAAATTTTAATAT
* * * * * * * *
56374845 TTAAATATAAAATTAAAAAAATAAGAAAAAAAATTAGTTTTCTATGCATCAC-TCGGTAAATTTC
1 TTAAA-A-AGAA-T--AATAA-AACACAAGAACTTCG----CTATGCATCACAT-TGTAAATTTC
* * * * * *
56374909 CATTTTAA-CTGCTTAAAAAATTATACTTTATCTTTAATTCTATAA-CGAACTTCGACTCAAAAT
55 CATTTTAACCT-CTTAAAAATTTATACTTTATATTTGATTCTGTAACCG-ACTTTGGCTCAAAAT
*
56374972 T-AGAGTTTTAATAT
118 TCA-AATTTTAATAT
* *
56374986 TTAAAAATGAAATTGAAAAAAAATCATAAAGCGTAAGAACTTCGCTATGCATCACATGGTAAATT
1 TTAAAAA-G-AA-T--AATAAAA-C----A-C--AAGAACTTCGCTATGCATCACATTGTAAATT
* * * * * * * *
56375051 TTCATTTTGACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAGCCGAATTAGCCTCGAAAT
53 TCCATTTTAACCTCTTAAAAATTTATACTTTATATTTGATTCTGTAACCGACTTTGGCTCAAAAT
*
56375116 TCGAATTTTAATAT
118 TCAAATTTTAATAT
56375130 TTAAAAATGAAT
1 TTAAAAA-GAAT
56375142 TTAAAAAGAT
Statistics
Matches: 564, Mismatches: 87, Indels: 111
0.74 0.11 0.15
Matches are distributed among these distances:
130 10 0.02
131 95 0.17
132 7 0.01
133 1 0.00
134 5 0.01
135 1 0.00
137 6 0.01
138 9 0.02
139 1 0.00
140 10 0.02
141 155 0.27
142 116 0.21
143 44 0.08
144 91 0.16
145 6 0.01
148 7 0.01
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (131 bp):
TTAAAAAGAATAATAAAACACAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCT
CTTAAAAATTTATACTTTATATTTGATTCTGTAACCGACTTTGGCTCAAAATTCAAATTTTAATA
T
Found at i:56374847 original size:415 final size:413
Alignment explanation
Indices: 56373767--56375411 Score: 1537
Period size: 415 Copynumber: 3.9 Consensus size: 413
56373757 GTGATCATCA
* * ** *
56373767 CACATGGTAAATTTCTATTTTAACCTCTTAAAATTTTATACTTTATCTATAATTCCATAACAAGC
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTCTGTAAC-AGA
* * * *
56373832 TTTGCCTCAAAATTCGAGTTTTGATTATTTAAAAATGAAATTAAAAGGAATCATAAGACACGAGA
65 TTTGCCTCAAAATTCGAATTTT-AATATTTAAAAATGAAATTAAAA-AAATAATAAGACACGAGA
* * *
56373897 ACTTCGCTATGCATCACATTGTAAATATCCATTTTAACCTCTTACAAATTTATTCTTTATATTTG
128 ACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTG
* ** * * * * *
56373962 ATTTTGTAACTGACTTGGCCTTGAAATTCGAATTTTAATAATTAGAAATGAAATTTAAAAAAT-A
193 ATTCTGTAACCAACTTCGCCTTGAAATTCAAATTTTAATATTTAAAAAT-AAAATTAAAAAATAA
** * ** *
56374026 TAAAACACGAGAAGTTTGCTATGCATCACATGATAAATTTTTATTTTAACATCTTAAAACTTTAT
257 TAAAACAAAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACA-CTTAAAAATTTAT
* * ** * * * *
56374091 ACTTTGTCTTTGATTCTGTAA-CCAATGTTGCCTTC-AAATTCGAATTTTAAAATTTAAAAATAA
321 ACTTTATCTTTAATTCTGTAATGGACT-TTGCC-TCAAAATTCGAGTTTTAATATTTAAAAATGA
* * * *
56374154 TATTTCAAAAAAGCATAAAACACAATTAGTTTTCCATGCAT
384 -A--TC-ATAAAGCATAAGA-AC--TTCG----CTATGCAT
* ** * *
56374195 CACATGGTAAATTTCAATTTTAACCTAATAAAAATTTATACTTTATCTATAATTCTAG-ATCAAA
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTCT-GTAACAGA
* * * *
56374259 CTTTGCCACAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATAATAAGACACAAGA
65 -TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAA-AATAATAAGACACGAGA
*
56374324 ACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATATTTG
128 ACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTG
* *
56374389 ATTCTATAACCAACTTCG-C-TGCAAAATTCAAATTTTAATATTTAAAAATGAAA-TAAAAAAGT
193 ATTCTGTAACCAACTTCGCCTTG--AAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAA-T
** *
56374451 AATAAAACACGAGAAGTTCAG-TATGCATCACATGGTAAATTTCCATTTTAATCACTTAAAAATT
255 AATAAAACAAAAGAAGTT-TGCTATGCATCACATGGTAAATTTCCATTTTAA-CACTTAAAAATT
* * * *
56374515 TATACTTTATATTTAAATTC-GTAATGGACTTTGGCTCAAAATTCGTGTTTCAATATTTAAAAA-
318 TATACTTTATCTTT-AATTCTGTAATGGACTTTGCCTCAAAATTCGAGTTTTAATATTTAAAAAT
* *
56374578 GAATCATAAGGCACAAGAACTTCGCTATGCAT
382 GAATCATAAAGCATAAGAACTTCGCTATGCAT
* * * * *
56374610 CAGATTGTAAATTTCCATTTTAACCAT-TTAAAAATTTATACTTTATCTTTGATTCTGTAACTGA
1 CACATGGTAAATTTCCATTTTAACC-TCTTAAAAATTTATACTTTATCTATAATTCTGTAACAGA
* * * *
56374674 TTTGGCCTCGAAATTCAAATTTTAATATTTAAAAATCAAATTAAAAAAATAATAAAACACGAGAA
65 TTT-GCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAGACACGAGAA
* * * *
56374739 GTTTGCTATGCATCCCA-TGATAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTTATCTTT
129 CTTCGCTATGCATCACATTG-TAAATTTCCATTTTAACCTCTTAAAAATTTATAC-TTTATATTT
* * *
56374803 GATTCTGTAACCGACGTT-GCCTTGAAGTTCAAATTTTAATATTTAAATATAAAATTAAAAAAAT
192 GATTCTGTAACCAAC-TTCGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATT-AAAAAAT
* ** * * *
56374867 AAGAAAA-AAAATTAGTTTTCTATGCATCAC-TCGGTAAATTTCCATTTTAACTGCTTAAAAAAT
255 AATAAAACAAAAGAAGTTTGCTATGCATCACAT-GGTAAATTTCCATTTTAAC-ACTTAAAAATT
* * * * * *
56374930 TATACTTTATCTTTAATTCTATAACGAACTTCGACTCAAAATTAGAGTTTTAATATTTAAAAATG
318 TATACTTTATCTTTAATTCTGTAATGGACTTTGCCTCAAAATTCGAGTTTTAATATTT---AA--
*
56374995 AAATTGAAAAAAAATCATAAAGCGTAAGAACTTCGCTATGCAT
378 AAA-TG------AATCATAAAGCATAAGAACTTCGCTATGCAT
* * * * * *
56375038 CACATGGTAAATTTTCATTTTGACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAGCCGAA
1 CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTCTGTAACAG-A
* * * * ** * *
56375103 TTAGCCTCGAAATTCGAATTTTAATATTTAAAAATGAATTTAAAAAGATTCTTAG----GA-CA-
65 TTTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAGACACGAGAAC
* * * * ** *
56375162 TT-AC-A--CATCACATTGTAAATTTTCA-TCTAACTTCTTAAAAATTTATACTGCATCTTTGAT
130 TTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTGAT
* * * * ** * * *
56375222 TTTGTAACTAACTTCGACTCGAAATTTGAATTTTAATACTTAAAAATAAAATTAAAAATTCATAA
195 TCTGTAACCAACTTCGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAATAATAA
* * *
56375287 AACAAAAGAAGTTTGTTATGCATCACATGGT-GATTTCCATTTTAAC-CTTATAGAAGTTTATAC
260 AACAAAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACACTTA-A-AAATTTATAC
* *
56375350 TTTATCTATAATTCTGTAATGGACTTTGCCTCAAAATTCGAGTTTGAATATTTAAAAATGAA
323 TTTATCTTTAATTCTGTAATGGACTTTGCCTCAAAATTCGAGTTTTAATATTTAAAAATGAA
56375412 GTTAAAGAGA
Statistics
Matches: 1019, Mismatches: 151, Indels: 119
0.79 0.12 0.09
Matches are distributed among these distances:
403 2 0.00
409 2 0.00
410 3 0.00
412 2 0.00
413 6 0.01
414 75 0.07
415 310 0.30
416 84 0.08
417 30 0.03
418 17 0.02
419 5 0.00
420 4 0.00
421 3 0.00
422 12 0.01
423 3 0.00
424 2 0.00
425 10 0.01
426 7 0.01
427 230 0.23
428 209 0.21
429 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (413 bp):
CACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTCTGTAACAGAT
TTGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAATTAAAAAAATAATAAGACACGAGAACT
TCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTGATT
CTGTAACCAACTTCGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAATAATAAA
ACAAAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACACTTAAAAATTTATACTTT
ATCTTTAATTCTGTAATGGACTTTGCCTCAAAATTCGAGTTTTAATATTTAAAAATGAATCATAA
AGCATAAGAACTTCGCTATGCAT
Found at i:56374983 original size:284 final size:281
Alignment explanation
Indices: 56373767--56375417 Score: 1360
Period size: 284 Copynumber: 5.9 Consensus size: 281
56373757 GTGATCATCA
* * * * *
56373767 CACATGGTAAATTTCTATTTTAACCTCTTAAAATTTTATACTTTATCTATAATTCCATAA-CAAG
1 CACATGGTAAATTTCCATTTTAA-CTCTTAAAAATTTATACTTTATCTTTGATTCTATAACCAA-
* * * * * *
56373831 CTTTGCCTCAAAATTCGAGTTTTGATTATTTAAAAATGAAATTAAAAGGAATCATAAGACACGAG
64 CTTCGCCTCAAAATTAGAATTTT-AATATTTAAAAATGAAATTAAAA-AAATCATAAAACACGAG
* * * * * *
56373896 AACTTCGCTATGCATCACATTGTAAATATCCATTTTAACCTCTTACAAATTTATTCTTTATATTT
127 AAGTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * * * *
56373961 GATTTTGTAACTGACTTGGCCTTGAAATTCGAATTTTAATAATTAGAAATGAAATTTAAAAAATA
192 GATTCTGTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTTA-AAATGAAATTAAAAAAATA
** * *
56374026 TA-AAACACGAGAAGTTTGCTATGCAT
256 -AGAAACAAAAGAACTTCGCTATGCAT
* ** * * *
56374052 CACATGATAAATTTTTATTTTAACATCTTAAAACTTTATACTTTGTCTTTGATTCTGTAACCAA-
1 CACATGGTAAATTTCCATTTTAAC-TCTTAAAAATTTATACTTTATCTTTGATTCTATAACCAAC
* * * * * *
56374116 TGTTGCCTTC-AAATTCGAATTTTAAAATTTAAAAAT-AATATTTCAAAAAAGCATAAAACACAA
65 T-TCGCC-TCAAAATTAGAATTTTAATATTTAAAAATGAA-A-TTAAAAAAATCATAAAACACGA
** ** * * ** *
56374179 TTAGTTTTCCATGCATCACATGGTAAATTTCAATTTTAACCTAATAAAAATTTATACTTTATCTA
126 GAAGTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
* * ** * * * *
56374244 TAATTCTAG-ATCAAACTTTGCCACAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGA
191 TGATTCT-GTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTT-AAAATGAAATTAAAAA-A
* *
56374308 ATAATAAGACACAAGAACTTCGCTATGCAT
253 ATAAGAA-ACAAAAGAACTTCGCTATGCAT
* * *
56374338 CACATTGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATATTTGATTCTATAACCAAC
1 CACATGGTAAATTTCCATTTTAA-CTCTTAAAAATTTATACTTTATCTTTGATTCTATAACCAAC
* *
56374403 TTCG-CTGCAAAATTCA-AATTTTAATATTTAAAAATGAAA-TAAAAAAGTAATAAAACACGAGA
65 TTCGCCT-CAAAATT-AGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGA
* * *
56374465 AGTTCAG-TATGCATCACATGGTAAATTTCCATTTTAATCACTTAAAAATTTATACTTTATATTT
128 AGTTC-GCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* ** * * ** * * *
56374529 AAATTC-GTAATGGACTTTGGCTCAAAATTCGTGTTTCAATATTTAAAAAG-AA-T-----CATA
192 -GATTCTGTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTTAAAATGAAATTAAAAAAATA
* *
56374586 AG--GCACAAGAACTTCGCTATGCAT
256 AGAAACAAAAGAACTTCGCTATGCAT
* * * **
56374610 CAGATTGTAAATTTCCATTTTAAC-CATTTAAAAATTTATACTTTATCTTTGATTCTGTAACTGA
1 CACATGGTAAATTTCCATTTTAACTC--TTAAAAATTTATACTTTATCTTTGATTCTATAACCAA
* * * * *
56374674 TTTGGCCTCGAAATTCA-AATTTTAATATTTAAAAATCAAATTAAAAAAATAATAAAACACGAGA
64 CTTCGCCTCAAAATT-AGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGA
* * *
56374738 AGTTTGCTATGCATCCCATGATAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTTATCTTT
128 AGTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATAC-TTTATCTTT
* * * * *
56374803 GATTCTGTAACCGACGTTGCCTTGAAGTTCAAATTTTAATATTTAAATATAAAATTAAAAAAATA
192 GATTCTGTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTTAAA-ATGAAATTAAAAAAATA
* ** * **
56374868 AGAAAAAAAATTAGTTTTCTATGCAT
256 AGAAACAAAAGAACTTCGCTATGCAT
* * *
56374894 CAC-TCGGTAAATTTCCATTTTAACTGCTTAAAAAATTATACTTTATCTTTAATTCTATAACGAA
1 CACAT-GGTAAATTTCCATTTTAACT-CTTAAAAATTTATACTTTATCTTTGATTCTATAACCAA
* * * ***
56374958 CTTCGACTCAAAATTAGAGTTTTAATATTTAAAAATGAAATTGAAAAAAAATCATAAAGCGTAAG
64 CTTCGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATT--AAAAAAATCATAAAACACGAG
* * *
56375023 AACTTCGCTATGCATCACATGGTAAATTTTCATTTTGACCTCTTAAAAATTTATACTTTATCTTT
127 AAGTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTT
* * * *
56375088 GATTCTGTAGCCGAATTAGCCTCGAAATTCGAATTTTAATATTTAAAAATG-AATT---TAAA-A
192 GATTCTGTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTT-AAAATGAAATTAAAAAAATA
** ** * *
56375148 AGATTC-TTAGGACATT-AC-A--CAT
256 AGAAACAAAAGAAC-TTCGCTATGCAT
* * * ** * * *
56375170 CACATTGTAAATTTTCA-TCTAACTTCTTAAAAATTTATACTGCATCTTTGATTTTGTAACTAAC
1 CACATGGTAAATTTCCATTTTAAC-TCTTAAAAATTTATACTTTATCTTTGATTCTATAACCAAC
* * * * * * **
56375234 TTCGACTCGAAATTTGAATTTTAATACTTAAAAATAAAATT-AAAAATTCATAAAACAAAAGAAG
65 TTCGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAG
* * * * * * *
56375298 TTTGTTATGCATCACATGGT-GATTTCCATTTTAACCT-TATAGAAGTTTATACTTTATCTATAA
130 TTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCT-TAAAAATTTATACTTTATCTTTGA
** * * * *
56375361 TTCTGTAATGGACTTTGCCTCAAAATTCGAGTTTGAATATTTAAAAATGAAGTTAAA
194 TTCTGTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTT-AAAATGAAATTAAA
56375418 GAGAATCATA
Statistics
Matches: 1108, Mismatches: 206, Indels: 114
0.78 0.14 0.08
Matches are distributed among these distances:
270 2 0.00
271 76 0.07
272 148 0.13
273 76 0.07
274 38 0.03
275 78 0.07
276 19 0.02
277 2 0.00
278 1 0.00
279 3 0.00
280 6 0.01
281 4 0.00
282 7 0.01
283 10 0.01
284 325 0.29
285 135 0.12
286 174 0.16
287 4 0.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.37
Consensus pattern (281 bp):
CACATGGTAAATTTCCATTTTAACTCTTAAAAATTTATACTTTATCTTTGATTCTATAACCAACT
TCGCCTCAAAATTAGAATTTTAATATTTAAAAATGAAATTAAAAAAATCATAAAACACGAGAAGT
TCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTTGATT
CTGTAACCGACTTTGCCTCGAAATTCGAATTTTAATATTTAAAATGAAATTAAAAAAATAAGAAA
CAAAAGAACTTCGCTATGCAT
Found at i:56375217 original size:131 final size:132
Alignment explanation
Indices: 56375035--56375279 Score: 332
Period size: 131 Copynumber: 1.9 Consensus size: 132
56375025 CTTCGCTATG
* * ** *
56375035 CATCACATGGTAAATTTTCATTTTGACCTCTTAAAAATTTATACTTTATCTTTGATTCTGTAGCC
1 CATCACATGGTAAATTTTCATTCTAACCTCTTAAAAATTTATACTGCATCTTTGATTCTGTA-AC
* * * *
56375100 GAA-TTAGCCTCGAAATTCGAATTTTAATATTTAAAAATGAATTTAAAAAGATTCTTAGGACATT
65 GAACTTAGACTCGAAATTCGAATTTTAATACTTAAAAATAAAATTAAAAAGATTCTTAGGACATT
56375164 ACA
130 ACA
* * * *
56375167 CATCACATTGTAAATTTTCA-TCTAACTTCTTAAAAATTTATACTGCATCTTTGATTTTGTAACT
1 CATCACATGGTAAATTTTCATTCTAACCTCTTAAAAATTTATACTGCATCTTTGATTCTGTAACG
* *
56375231 AACTTCGACTCGAAATTTGAATTTTAATACTTAAAAATAAAATTAAAAA
66 AACTTAGACTCGAAATTCGAATTTTAATACTTAAAAATAAAATTAAAAA
56375280 TTCATAAAAC
Statistics
Matches: 97, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
130 3 0.03
131 75 0.77
132 19 0.20
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.40
Consensus pattern (132 bp):
CATCACATGGTAAATTTTCATTCTAACCTCTTAAAAATTTATACTGCATCTTTGATTCTGTAACG
AACTTAGACTCGAAATTCGAATTTTAATACTTAAAAATAAAATTAAAAAGATTCTTAGGACATTA
CA
Found at i:56375332 original size:699 final size:695
Alignment explanation
Indices: 56373880--56375456 Score: 1738
Period size: 699 Copynumber: 2.3 Consensus size: 695
56373870 AATTAAAAGG
* ** * *
56373880 AATCATAAGACACGAGAACTTCGCTATGCATCACATTGTAAATATCCATTTTAACCTCTTACAAA
1 AATCATAAAACAAAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCT-TTAAAAA
* * * * * * *
56373945 TTTATTCTTTATATTTGATTTTGTAACTGACTTGGCCTTGAAATTCGAATTTTAATAATTAGAAA
65 TTTATACTTTATCTTTGATTCTGTAACTGATTTGGCCTCGAAATTCGAATTTTAATATTTAAAAA
* **
56374010 TGAAATTTAAAAAATATAAAACACGAGAAGTTTGCTATGCATCACATGATAAATTTTTATTTTAA
130 TGAAATTAAAAAAATATAAAACACGAGAAGTTTGCTATGCATCACATGATAAATTTCCATTTTAA
* * * *
56374075 CATCTTAAAACTTTATACTTTGTCTTTGATTCTGTAACCAATGTTGCCTTCAAATTCGAATTTTA
195 CATCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAACGTTGCCTTCAAATTCAAATTTTA
* * * * *
56374140 AAATTTAAAAATAATATTTCAAAAAAGCATAAAACACAATTAGTTTTCCATGCATCACATGGTAA
260 AAATTTAAAAATAATAATTAAAAAAAGAAGAAAACAAAATTAGTTTTCCATGCATCACATGGTAA
* * * *
56374205 ATTTCAATTTTAACCTAATAAAAATTTATACTTTATCTATAATTCTAGATCAAACTTTGCCACAA
325 ATTTCAATTTTAACCT-ATAAAAAATTATACTTTATCTATAATTCTAGAACAAACTTCGACACAA
* *
56374270 AATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATAATAAGACACAAGAACTTCGCTATG
389 AATTAGAGTTTCAATATTTAAAAATGAAATTAAAAAAAATAATAAGACACAAGAACTTCGCTATG
* *
56374335 CATCACATTGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTTATATTTGATTCTATAACC
454 CATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTGATTCTATAACC
*
56374400 AACTTCGCTGCAAAATTCAAATTTTAATATTTAAAAATGAAATAAAAAAGTAATAAAACACGAGA
519 AACTTAGCTGCAAAATTCAAATTTTAATATTTAAAAATGAAATAAAAAAG-AATAAAACACGAGA
* * **
56374465 AGTTCAGTATGCATCACATGGTAAATTTCCATTTTAATCACTTAAAAATTTATACTTTATATTTA
583 AGTTCAGCA-GCATCACATGGTAAATTTCCATTCTAATCACTTAAAAATTTATACTGCATATTTA
* * * ** *
56374530 AATTCGTAATGGACTTTGGCTCAAAATTCGTGTTTCAATATTTAAAAAG
647 AATTCGTAATGAACTTCGACTCAAAATTCGAATTTCAATATTTAAAAAA
** * *
56374579 AATCATAAGGCACAAGAACTTCGCTATGCATCAGATTGTAAATTTCCATTTTAACCATTTAAAAA
1 AATCATAAAACAAAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACC-TTTAAAAA
*
56374644 TTTATACTTTATCTTTGATTCTGTAACTGATTTGGCCTCGAAATTCAAATTTTAATATTTAAAAA
65 TTTATACTTTATCTTTGATTCTGTAACTGATTTGGCCTCGAAATTCGAATTTTAATATTTAAAAA
* *
56374709 TCAAATTAAAAAAATAATAAAACACGAGAAGTTTGCTATGCATCCCATGATAAATTTCCATTTTA
130 TGAAATTAAAAAAAT-ATAAAACACGAGAAGTTTGCTATGCATCACATGATAAATTTCCATTTTA
* * * *
56374774 ACCTCTTAAAAATTTATACTTTTATCTTTGATTCTGTAACCGACGTTGCCTTGAAGTTCAAATTT
194 ACATCTTAAAAATTTATAC-TTTATCTTTGATTCTGTAACCAACGTTGCCTTCAAATTCAAATTT
* * * *
56374839 TAATATTTAAATATAA-AATTAAAAAAATAAGAAAA-AAAATTAGTTTTCTATGCATCAC-TCGG
258 TAAAATTTAAAAATAATAATTAAAAAAAGAAGAAAACAAAATTAGTTTTCCATGCATCACAT-GG
* * * *
56374901 TAAATTTCCATTTTAACTGCT-TAAAAAATTATACTTTATCTTTAATTCTATAACGAACTTCGAC
322 TAAATTTCAATTTTAAC--CTATAAAAAATTATACTTTATCTATAATTCTAGAACAAACTTCGAC
* * * **
56374965 TCAAAATTAGAGTTTTAATATTTAAAAATGAAATTGAAAAAAAATCATAA-AGCGTAAGAACTTC
385 ACAAAATTAGAGTTTCAATATTTAAAAATGAAATT-AAAAAAAATAATAAGA-CACAAGAACTTC
* * *
56375029 GCTATGCATCACATGGTAAATTTTCATTTTGACCTCTTAAAAATTTATACTTTATCTTTGATTCT
448 GCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTGATTCT
* * * * * * ***
56375094 GTAGCCGAA-TTAGCCT-CGAAATTCGAATTTTAATATTTAAAAATGAATTTAAAAAG-AT-TCT
513 ATAACC-AACTTAG-CTGCAAAATTCAAATTTTAATATTTAAAAATGAAATAAAAAAGAATAAAA
* * * *
56375155 TA-G-GACA-TT-A-CA-CATCACATTGTAAATTTTCA-TCTAA-CTTCTTAAAAATTTATACTG
576 CACGAGA-AGTTCAGCAGCATCACATGGTAAATTTCCATTCTAATC-ACTTAAAAATTTATACTG
* * * * * * *
56375212 CATCTTTGATTTTGTAACT-AACTTCGACTCGAAATTTGAATTTTAATACTTAAAAATAAAATTA
639 CATATTTAAATTCGTAA-TGAACTTCGACTCAAAATTCGAATTTCAATA-TT-----T-AAA--A
56375276 AA
694 AA
* * * * * *
56375278 AATTCATAAAACAAAAGAAGTTTGTTATGCATCACATGGT-GATTTCCATTTTAACCTTATAGAA
1 AA-TCATAAAACAAAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTT-TAAAA
* * * * * *
56375342 GTTTATACTTTATCTATAATTCTGTAA-TGGACTTT-GCCTCAAAATTCGAGTTTGAATATTTAA
64 ATTTATACTTTATCTTTGATTCTGTAACT-GA-TTTGGCCTCGAAATTCGAATTTTAATATTTAA
* * * * * * *
56375405 AAATGAAGTTAAAGAGAATCATAAGACACGAGCACTTCGCTACGCATCACAT
127 AAATGAAATTAAA-AAAAT-ATAAAACACGAGAAGTTTGCTATGCATCACAT
56375457 TTTGTGAAAA
Statistics
Matches: 738, Mismatches: 113, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
689 1 0.00
690 53 0.07
691 21 0.03
693 1 0.00
694 1 0.00
695 4 0.01
696 3 0.00
697 4 0.01
698 6 0.01
699 320 0.43
700 265 0.36
701 59 0.08
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.37
Consensus pattern (695 bp):
AATCATAAAACAAAAGAACTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTTTAAAAAT
TTATACTTTATCTTTGATTCTGTAACTGATTTGGCCTCGAAATTCGAATTTTAATATTTAAAAAT
GAAATTAAAAAAATATAAAACACGAGAAGTTTGCTATGCATCACATGATAAATTTCCATTTTAAC
ATCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCAACGTTGCCTTCAAATTCAAATTTTAA
AATTTAAAAATAATAATTAAAAAAAGAAGAAAACAAAATTAGTTTTCCATGCATCACATGGTAAA
TTTCAATTTTAACCTATAAAAAATTATACTTTATCTATAATTCTAGAACAAACTTCGACACAAAA
TTAGAGTTTCAATATTTAAAAATGAAATTAAAAAAAATAATAAGACACAAGAACTTCGCTATGCA
TCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATATTTGATTCTATAACCAA
CTTAGCTGCAAAATTCAAATTTTAATATTTAAAAATGAAATAAAAAAGAATAAAACACGAGAAGT
TCAGCAGCATCACATGGTAAATTTCCATTCTAATCACTTAAAAATTTATACTGCATATTTAAATT
CGTAATGAACTTCGACTCAAAATTCGAATTTCAATATTTAAAAAA
Found at i:56380716 original size:5 final size:5
Alignment explanation
Indices: 56380706--56380730 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
56380696 TTTTTCTTGC
56380706 AATTT AATTT AATTT AATTT AATTT
1 AATTT AATTT AATTT AATTT AATTT
56380731 TTATTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
AATTT
Found at i:56391085 original size:20 final size:20
Alignment explanation
Indices: 56391062--56391105 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
56391052 ATATAGTGTC
56391062 AATGCGACACATAACAGAAT
1 AATGCGACACATAACAGAAT
56391082 AATGCGACACATAACAGAAT
1 AATGCGACACATAACAGAAT
56391102 AATG
1 AATG
56391106 TACAGAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.50, C:0.18, G:0.16, T:0.16
Consensus pattern (20 bp):
AATGCGACACATAACAGAAT
Found at i:56394185 original size:142 final size:141
Alignment explanation
Indices: 56392303--56394425 Score: 1685
Period size: 143 Copynumber: 15.1 Consensus size: 141
56392293 AGGGTGTTAC
* * * *
56392303 ACTTTATCTTTGATTCTATAGCTGACTT-GACCTCAAAATAT-GAATTTTAATATTTAAAAAAGA
1 ACTTTATCTTTAATTCTATAACGGACTTCG-CCTCAAAAT-TCGAATTTTAATATTTAAAAATGA
* * * *
56392366 AA-TAAAAACATCATAAAACACTAGAAGTTTGCTATGCATCACA-TGATAAATTTTCATTTTAAC
64 AATTAAAAAAATCATAAAACACGAGAA-CTTGCTATGCATCACATTG-TAAATTTCCATTTTAAC
56392429 CTCTTAAAAATTTAT
127 CTCTTAAAAATTTAT
* * * * *
56392444 ACTTTATCTATAATT-TCATATCGGACTTTGCCTCAAAATTC-AAGTTTCAGTATTTAAAAATGA
1 ACTTTATCTTTAATTCT-ATAACGGACTTCGCCTCAAAATTCGAA-TTTTAATATTTAAAAATGA
* * *
56392507 AATTAAAAAAGTATCATAAGACACGAGCACTTCGCTATGCATCAGATTGTAAATTTCCATTTTAA
64 AATTAAAAAA--ATCATAAAACACGAGAACTT-GCTATGCATCACATTGTAAATTTCCATTTTAA
*
56392572 CCTCTTAAAAAGTTAT
126 CCTCTTAAAAATTTAT
* * *
56392588 ACTTTAT-TTATAATT-TCATAAAGGACTTTGCCTCAAAATTC-AATGTTCCAATATTTAAAAAT
1 ACTTTATCTT-TAATTCT-ATAACGGACTTCGCCTCAAAATTCGAAT-TT-TAATATTTAAAAAT
* * * *
56392650 GAAATTAAAAAGAATCATAAGACACAAGCACTTCACTATGCATCACATTGTAAATTTCCATTTTA
62 GAAATTAAAAA-AATCATAAAACACGAGAACTT-GCTATGCATCACATTGTAAATTTCCATTTTA
* *
56392715 ACCTCTTAAAAAGTGAT
125 ACCTCTTAAAAATTTAT
* *
56392732 ACTTTAT-TTATAATTTCGTA-AA-GGACTTTGCCTCAAAATTC-AATGTTCCAATATTTAAAAA
1 ACTTTATCTT-TAA-TTC-TATAACGGACTTCGCCTCAAAATTCGAAT-TT-TAATATTTAAAAA
* * * *
56392793 TGAAATTAAAAAGAATCATAAGACACAAGCACTTCACTATG-ATCACATTGTAAATTTCCATTTT
61 TGAAATTAAAAA-AATCATAAAACACGAGAACTT-GCTATGCATCACATTGTAAATTTCCATTTT
*
56392857 AACCTTTTAAAAATTTAT
124 AACCTCTTAAAAATTTAT
* * * ** * * * * * * *
56392875 ACTTTGTATTTGATTCTATAATTGAATTCACCTCGAAATTCAAATTTTAAAATTTAGAGATGAAA
1 ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAA
* * * * *
56392940 TTAAAAAAAATTATAAAACACAAGAAGTTTTCTATGCATCACATGGTAAATTTCCATTTT-ACCA
66 TT-AAAAAAATCATAAAACACGAGAA-CTTGCTATGCATCACATTGTAAATTTCCATTTTAACC-
*
56393004 ACTTAAAAATTTAT
128 TCTTAAAAATTTAT
* * * * * * * *
56393018 ACATTCTCTTTAATTCCGA-AACAGG-CTTCGCCTTAAAATTTGAGTTTCAATA-TTGAAAAT-A
1 ACTTTATCTTTAATT-CTATAAC-GGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGA
* *
56393079 TATTAAAAAGAATCATAAAACACGAGAACTTAGCGATGCATCACATTGTAAATTTCCATTTTAAC
64 AATTAAAAA-AATCATAAAACACGAGAACTT-GCTATGCATCACATTGTAAATTTCCATTTTAAC
*
56393144 CTCTTAAGAATTTAT
127 CTCTTAAAAATTTAT
* * ** ** * * * * * *
56393159 ACTTTATTTTTTATTCGGTAATTGACTTGGACTCAAGATTTGAATTTTAATATTTAATAACGAAA
1 ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAA
* *
56393224 TT-AAAAAATCATAAAACACTAGAAGTTTGCTATGCATCACA-TGTTAAATTTCCATTTTAACCA
66 TTAAAAAAATCATAAAACACGAGAA-CTTGCTATGCATCACATTG-TAAATTTCCATTTTAACC-
* *
56393287 T-TGAAAATTTTAT
128 TCTTAAAAATTTAT
* * * * * *
56393300 A-TTTTTCTTTAATTAC-ATAACAGACTTGGCCTCAAAATTCGAGTATCAATATTTAAAAATGAA
1 ACTTTATCTTTAATT-CTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAA
* * * * *
56393363 ACTAAAAACAATCATAAGACACGAGAACTTTGCTATGCATCACATTGTAAATTTTCATATTAACT
65 ATTAAAAA-AATCATAAAACACGAGAAC-TTGCTATGCATCACATTGTAAATTTCCATTTTAACC
*
56393428 TCTTAAAAAATTAT
128 TCTTAAAAATTTAT
* * * * * * * *
56393442 AGTTTATTTTTTATTCTGTAACTGACTTTGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAA
1 ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAA
* * * * * *
56393507 TTATAAAAACTCATAAAACACGAGAAGTTTTCTATGCATCACATGGTAAATTTTCATTTTAACCA
66 TTA-AAAAAATCATAAAACACGAGAA-CTTGCTATGCATCACATTGTAAATTTCCATTTTAACCT
* *
56393572 CTTGAAAAGTTAT
129 CTTAAAAATTTAT
** * * * *
56393585 ACTTTATCTTTAATTCCGTAACGAAGTTCGCCTCAAAATTCG-GTTTCAATATTT----A--AAA
1 ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAA
* ** * * * *
56393643 TTAAAACAATCATATGACATGAGAACTTCCCTATGCATCACATTGTAAATTTCCAGTTTATCCTC
66 TTAAAAAAATCATAAAACACGAGAACTT-GCTATGCATCACATTGTAAATTTCCATTTTAACCTC
56393708 TTAAAAATTTAT
130 TTAAAAATTTAT
* * * * ** * * *
56393720 AATTTATCTTTGATTCTGTAGCCAACATT-GCATCGAAATTCAAATTTTAATATTTAAAAATGAA
1 ACTTTATCTTTAATTCTATAACGGAC-TTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAA
** * ** * *
56393784 ATTATAAAAAATTGTAAAACACGAGAAAATTTATATGCATCACATGGTAAATTTCCATTTTAATC
65 ATTA-AAAAAATCATAAAACACGAG-AACTTGCTATGCATCACATTGTAAATTTCCATTTTAACC
* *
56393849 ACTTAAAAAATTAT
128 TCTTAAAAATTTAT
* * * * * *
56393863 ACTTTATCTTTAATTCCATAATGGAGTTCGACTCAAAATTCG-ATTTTCAATATCTAACAAT-AA
1 ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTT-AATATTTAAAAATGAA
* * * * * *
56393926 ATTAAAAACAA-CAATAAGACACGATAATTTCACTATGCATTACATTGTAAATTTTCATTTTAAC
65 ATTAAAAA-AATC-ATAAAACACGAGAACTT-GCTATGCATCACATTGTAAATTTCCATTTTAAC
* *
56393990 CTCGTAAAAATTTGT
127 CTCTTAAAAATTTAT
** * * *
56394005 ACTTTATCTTTGTTTCTGTAATC-GACTTGGCCTCGAAATTCGAATTTTAATATTTAAAAATGAA
1 ACTTTATCTTTAATTCTATAA-CGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAA
* *
56394069 ATTAAAAAAATCATAAAACACGAGAAACTTGCTATGCGTCACA-TGATAAATTTCCATTTTAACA
65 ATTAAAAAAATCATAAAACACGAG-AACTTGCTATGCATCACATTG-TAAATTTCCATTTTAACC
* **
56394133 TCTTTAAAGGTTAT
128 TCTTAAAAATTTAT
* * ** **
56394147 ACTTTATGTTTGATTCTATAACCAACGTT-GCCTTGAAATTCGAA-TTTAA-A---AAAAA--AA
1 ACTTTATCTTTAATTCTATAACGGAC-TTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAA
* * ** * * *
56394204 GCTT---AAAA-C---ACA-ATTAG--TTTTCTATGCATCACATGGTAAATTTCCATTTTAACCT
65 -ATTAAAAAAATCATAAAACACGAGAACTTGCTATGCATCACATTGTAAATTTCCATTTTAACCT
* *
56394259 CGTAAAAAGTTAT
129 CTTAAAAATTTAT
* * * * * * *
56394272 ACTTTATCTATAATTCCATAACGGACTTTGGCTCAAAATTTGAGTTTCAATATTTAAAAATGAAA
1 ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAA
* * * *
56394337 TTAAAAAGAATAATAAGA-ATGAAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACC
66 TTAAAAA-AATCATAAAACACG-AGAACTT-GCTATGCATCACATTGTAAATTTCCATTTTAACC
56394401 TCTTAAAAATTTAT
128 TCTTAAAAATTTAT
*
56394415 ACTTTGTCTTT
1 ACTTTATCTTT
56394426 GATTATGTAG
Statistics
Matches: 1603, Mismatches: 287, Indels: 182
0.77 0.14 0.09
Matches are distributed among these distances:
124 2 0.00
125 71 0.04
126 5 0.00
127 1 0.00
128 3 0.00
129 2 0.00
130 5 0.00
131 2 0.00
132 3 0.00
133 4 0.00
134 4 0.00
135 91 0.06
136 20 0.01
137 5 0.00
138 1 0.00
139 4 0.00
140 68 0.04
141 223 0.14
142 332 0.21
143 454 0.28
144 270 0.17
145 30 0.02
146 2 0.00
147 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (141 bp):
ACTTTATCTTTAATTCTATAACGGACTTCGCCTCAAAATTCGAATTTTAATATTTAAAAATGAAA
TTAAAAAAATCATAAAACACGAGAACTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCT
TAAAAATTTAT
Found at i:56395023 original size:23 final size:25
Alignment explanation
Indices: 56394990--56395035 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
56394980 TATGTAGGAA
*
56394990 ATTTTCTGAAAAATCT-GCATTATT
1 ATTTTCTGAAAAATATCGCATTATT
56395014 ATTTT-TGAAAAATATCGCATTA
1 ATTTTCTGAAAAATATCGCATTA
56395036 GCATAATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.37, C:0.11, G:0.09, T:0.43
Consensus pattern (25 bp):
ATTTTCTGAAAAATATCGCATTATT
Found at i:56396942 original size:62 final size:63
Alignment explanation
Indices: 56396873--56397004 Score: 187
Period size: 63 Copynumber: 2.1 Consensus size: 63
56396863 TAAGGTGCAA
* * * *
56396873 GGGTCACATGGGC-TGACACAGAGGCATGTGTCCAGGCCGTGTAACTCACTGACTT-TGATTTT
1 GGGTCACACGGGCAAGACACACAGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCAGA-TTT
* *
56396935 GGGTCACACGGGCAAGCCACACAGGCTTGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTT
1 GGGTCACACGGGCAAGACACACAGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTT
56396998 GGGTCAC
1 GGGTCAC
56397005 TGTAACACCC
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
62 12 0.19
63 48 0.77
64 2 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (63 bp):
GGGTCACACGGGCAAGACACACAGGCATGTGTCCAGGCCGTGTAACTCACTGACTTCAGATTT
Found at i:56400328 original size:141 final size:138
Alignment explanation
Indices: 56400021--56400949 Score: 662
Period size: 141 Copynumber: 6.6 Consensus size: 138
56400011 AGGGTGTTAC
* * * * *
56400021 ACTTAGCCTCAAAATTCGACTTTTAATATTTAAAAATGAAATTAAGAAAATCATAAAACGCGAA-
1 ACTTTGCCTCAAAATTCGAATTTCAATATTTAAAAAT-AAAATAA-AAAATCATAAAACAC-AAG
* * * * *
56400085 AAGTTTACTATGAATCACATGATAAATTT-CA---AAACCTCTTAAAAAGTTATACTTTATCTTT
63 AAGTTTCCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATC-TT
* * *
56400146 GATTTTGTAACCG
127 AATTCT-TAACGG
* * * * * * * **
56400159 ACTTTACCTTGAAAA-TCGAATTTTAATATTTACAAATAAAACAAAATAAGCAAAAAACACAATT
1 ACTTTGCC-TCAAAATTCGAATTTCAATATTTAAAAATAAAATAAAA-AATCATAAAACACAAGA
*
56400223 AGTTTCCAATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATA
64 AGTTTCCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT-TA
*
56400288 CATCCTTAACGG
128 -ATTCTTAACGG
* * * * * * * **
56400300 AGTTCGCCTCAAAATTCGAGTTTCAATATTGAAAAAATAAATTAAGAATAATCATAAGATATGAG
1 ACTTTGCCTCAAAATTCGAATTTCAATATT-TAAAAATAAAATAA-AA-AATCATAAAACACAAG
** * * * *
56400365 AA-TTAAGCTATG-AGTCACATTGTAAATTT-CATTTTTGACCTCTTAAAAATTTATAGGTTTTT
63 AAGTT-TCCTATGCA-TCACATGGTAAATTTCCA-TTTTAACCTCTTAAAAATTTATA-CTTTAT
* * ** * *
56400427 TTCTATTTGATAGCTG
124 CT-TAATTCTTAACGG
* * * * * * * *
56400443 ACTTGGCCTCGAAATTCTAATTTTAATATTTAAAACTGAAATTAAAAAATCATAAAACTCTAGAA
1 ACTTTGCCTCAAAATTCGAATTTCAATATTTAAAAAT-AAAATAAAAAATCATAAAACACAAGAA
* * *
56400508 GTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTGTACTTTATCTTTCA
65 GTTTCCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATC-TTAA
* *
56400573 TTTTGTAATGG
129 TTCT-TAACGG
* * * *
56400584 AGTTTGCCTCAAAATTC-AAGTTTCAATAGTTAAAAATGAAATTAAAAAGAATCAT--AAGACAA
1 ACTTTGCCTCAAAATTCGAA-TTTCAATATTTAAAAAT-AAAAT-AAAA-AATCATAAAACACAA
* * * *
56400646 -AAGTTTGCTATGCATCACATGGTAAATTTCCGTTTTAACCTTTTAAAAATTTATACTTTATATT
62 GAAGTTTCCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT-CT
* * *
56400710 TGATTCTGTACCCG
126 TAATTCT-TAACGG
* * ** * * * *
56400724 ACTTAGTCTTGAATTTCAAATTTTAATATTTAAAAATAAAATTAAAAAACTCATAAAACACTAGA
1 ACTTTGCCTCAAAATTCGAATTTCAATATTTAAAAATAAAA-TAAAAAA-TCATAAAACACAAGA
*
56400789 AGTTTGCC-ATGCATCACATGGTAAATTTCCATTTTAATCTCTTAAAAATTTATACTTTATCTAT
64 AGTTT-CCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT-T
*
56400853 AATTTCGTAACGG
127 AA-TTCTTAACGG
* * * ** *
56400866 ACTTTGTCTCAAGATTCGAGTTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAGACACAAG
1 ACTTTGCCTCAAAATTCGAATTTCAATATTTAAAAAT-AAAAT-AAAA-AATCATAAAACACAAG
* * *
56400931 CATTTTGCTATGCATCACA
63 AAGTTTCCTATGCATCACA
56400950 ACGCTATATC
Statistics
Matches: 618, Mismatches: 134, Indels: 73
0.75 0.16 0.09
Matches are distributed among these distances:
136 4 0.01
137 39 0.06
138 30 0.05
139 16 0.03
140 110 0.18
141 153 0.25
142 126 0.20
143 131 0.21
144 9 0.01
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (138 bp):
ACTTTGCCTCAAAATTCGAATTTCAATATTTAAAAATAAAATAAAAAATCATAAAACACAAGAAG
TTTCCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTAATT
CTTAACGG
Found at i:56400411 original size:143 final size:138
Alignment explanation
Indices: 56400231--56400949 Score: 614
Period size: 142 Copynumber: 5.1 Consensus size: 138
56400221 TTAGTTTCCA
*
56400231 ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTATACATCCTTA
1 ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT-TACATTCTTA
*
56400296 ACGGAGTTCGCCTCAAAATTCGAGTTTCAATATTGAAAAAAT-AAATTAAGAATAATCATAAGAT
65 ACGGAGTTCGCCTCAAAATTCAAGTTTCAATATT--AAAAATGAAATTAA-AA-AATCATAAGAT
*
56400360 ATGAGAA-TTAAGCT
126 AT-AGAAGTT-TGCT
* * * *
56400374 ATG-AGTCACATTGTAAATTT-CATTTTTGACCTCTTAAAAATTTATAGGTTT-T-TTTCTATT-
1 ATGCA-TCACATGGTAAATTTCCA-TTTTAACCTCTTAAAAATTTATA-CTTTATCTTAC-ATTC
* * * * * * *
56400434 TGATAGCTGACTTGGCCTCGAAATTCTAA-TTTTAATATTTAAAACTGAAATTAAAAAATCATAA
62 T--TAACGGAGTTCGCCTCAAAATTC-AAGTTTCAATA-TTAAAAATGAAATTAAAAAATCATAA
* *
56400498 AACTCTAGAAGTTTGCT
123 GA-TATAGAAGTTTGCT
* * *
56400515 ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTGTACTTTATCTTTCATTTTGTA
1 ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTACATTCT-TA
* * *
56400580 ATGGAGTTTGCCTCAAAATTCAAGTTTCAATAGTTAAAAATGAAATTAAAAAGAATCATAAGACA
65 ACGGAGTTCGCCTCAAAATTCAAGTTTCAATA-TTAAAAATGAAATT-AAAA-AATCATAAGATA
56400645 -A-AAGTTTGCT
127 TAGAAGTTTGCT
* * * **
56400655 ATGCATCACATGGTAAATTTCCGTTTTAACCTTTTAAAAATTTATACTTTATATTTGATTCTGTA
1 ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTACATTCT-TA
* * * * * ** * * * * * *
56400720 CCCGACTTAGTCTTGAATTTCAAATTTTAATATTTAAAAATAAAATTAAAAAACTCATAAAACAC
65 ACGGAGTTCGCCTCAAAATTCAAGTTTCAATA-TTAAAAATGAAATTAAAAAA-TCATAAGATA-
*
56400785 TAGAAGTTTGCC
127 TAGAAGTTTGCT
* *
56400797 ATGCATCACATGGTAAATTTCCATTTTAATCTCTTAAAAATTTATACTTTATCTATA-ATTTCGT
1 ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT-TACA-TTCTT
* * * * * * *
56400861 AACGGACTTTGTCTCAAGATTCGAGTTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAGAC
64 AACGGAGTTCGCCTCAAAATTCAAGTTTCAATA-TTAAAAATGAAATT-AAAA-AATCATAAGAT
* * *
56400926 ACAAGCATTTTGCT
126 A-TAGAAGTTTGCT
56400940 ATGCATCACA
1 ATGCATCACA
56400950 ACGCTATATC
Statistics
Matches: 472, Mismatches: 77, Indels: 54
0.78 0.13 0.09
Matches are distributed among these distances:
138 2 0.00
139 13 0.03
140 107 0.23
141 100 0.21
142 125 0.26
143 117 0.25
144 8 0.02
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.37
Consensus pattern (138 bp):
ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTTACATTCTTAA
CGGAGTTCGCCTCAAAATTCAAGTTTCAATATTAAAAATGAAATTAAAAAATCATAAGATATAGA
AGTTTGCT
Found at i:56400847 original size:282 final size:279
Alignment explanation
Indices: 56400026--56400949 Score: 1001
Period size: 284 Copynumber: 3.3 Consensus size: 279
56400016 GTTACACTTA
* * * * *
56400026 GCCTCAAAATTCGACTTTTAATATTTAAAAATGAAATTAAGAA-AATCATAAAACGCGAAAAGTT
1 GCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACAC--AAAGTT
* * * ** *
56400090 TACTATGAATCACATGATAAATTT-C--AAAACCTCTTAAAAAGTTATACTTTATCTTTGATTTT
64 TGCTATGCATCACATGGTAAATTTCCTTTTAACCTCTTAAAAATTTATACTTTAT-TTTGA-TTT
* * * * * *
56400152 GTAACCGACTTTA-CCTTGAAAATCGAATTTTAATATTTACAAATAAAA-CAAAATAAGCAAAAA
127 GTAACCGAC-TTAGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAA-AATCATAAA
* **
56400215 ACACAATTAGTTT-CCAATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT
190 ACACTAGAAGTTTGCC-ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACT
* ** *
56400279 TTATCTATACATCCT-TAACGGAGTTC
254 TTATCT-TTCATTTTGTAACGGAGTTT
* * * * *
56400305 GCCTCAAAATTCGAGTTTCAATATTGAAAAAAT-AAATTAAGAATAATCATAAGATATGAGAA-T
1 GCCTCAAAATTCGAGTTTCAATATT-TAAAAATGAAATTAAAAAGAATCATAAGACA-CA-AAGT
* * * * * *
56400368 TAAGCTATG-AGTCACATTGTAAATTTCATTTTTGACCTCTTAAAAATTTATAGGTTT-TTTTCT
63 T-TGCTATGCA-TCACATGGTAAATTTC-CTTTTAACCTCTTAAAAATTTATA-CTTTATTTT-G
* * * * * * *
56400431 ATTTGATAGCTGACTTGGCCTCGAAATTCTAATTTTAATATTTAAAACTGAAATTAAAAAATCAT
123 ATTTG-TAACCGACTTAGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAATCAT
* * *
56400496 AAAACTCTAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTGTA
187 AAAACACTAGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATA
*
56400561 CTTTATCTTTCATTTTGTAATGGAGTTT
252 CTTTATCTTTCATTTTGTAACGGAGTTT
* *
56400589 GCCTCAAAATTCAAGTTTCAATAGTTAAAAATGAAATTAAAAAGAATCATAAGACA-AAAGTTTG
1 GCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACAAAGTTTG
*
56400653 CTATGCATCACATGGTAAATTTCCGTTTTAACCTTTTAAAAATTTATACTTTATATTTGATTCTG
66 CTATGCATCACATGGTAAATTTCC-TTTTAACCTCTTAAAAATTTATACTTTAT-TTTGATT-TG
* * *
56400718 TACCCGACTTAGTCTTGAATTTCAAATTTTAATATTTAAAAATAAAATTAAAAAACTCATAAAAC
128 TAACCGACTTAGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAA-TCATAAAAC
*
56400783 ACTAGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAATCTCTTAAAAATTTATACTTTA
192 ACTAGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTA
* * * *
56400848 TCTATAATTTCGTAACGGACTTT
257 TCTTTCATTTTGTAACGGAGTTT
* * * *
56400871 GTCTCAAGATTCGAGTTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAGACACAAGCATTT
1 GCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACAA--AGTT
56400936 TGCTATGCATCACA
64 TGCTATGCATCACA
56400950 ACGCTATATC
Statistics
Matches: 539, Mismatches: 78, Indels: 50
0.81 0.12 0.07
Matches are distributed among these distances:
279 37 0.07
280 38 0.07
281 94 0.17
282 148 0.27
283 22 0.04
284 175 0.32
285 25 0.05
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.36
Consensus pattern (279 bp):
GCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACAAAGTTTG
CTATGCATCACATGGTAAATTTCCTTTTAACCTCTTAAAAATTTATACTTTATTTTGATTTGTAA
CCGACTTAGCCTTGAAATTCAAATTTTAATATTTAAAAATAAAATTAAAAAATCATAAAACACTA
GAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCTT
TCATTTTGTAACGGAGTTT
Found at i:56401139 original size:196 final size:196
Alignment explanation
Indices: 56400786--56401145 Score: 558
Period size: 196 Copynumber: 1.8 Consensus size: 196
56400776 ATAAAACACT
*
56400786 AGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAATCTCTTAAAAATTTATACTTTATCT
1 AGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * * * *
56400851 ATAATTTCGTAACGGACTTTGTCTCAAGATTCGAGTTTCAATATTTAAAAATGAAGTTAAAAAGA
66 ATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAATTAAAAAGA
* *
56400916 ATCATAAGACACAAGCATTTTGCTATGCATCACAACGCTATATCTTAAGAAGAATCATAAGACCC
131 ATCATAAGACACAAGAATTTCGCTATGCATCACAACGCTATATCTTAAGAAGAATCATAAGACCC
56400981 G
196 G
** * *
56400982 AGAAGTTTGTTATGCATCTCATGGTAAATTTCCATTTTAACCTTTTAAAAATTTATACTTTATCT
1 AGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
* * *
56401047 ATAATTCCGTAACGGGCTTTGCCTTAAAATTTGAGTTTCAATATTTAAAAATAAAATTAAAAAGA
66 ATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAATTAAAAAGA
* * *
56401112 TTCATAATACACGAGAATTTCGCTATGCATCACA
131 ATCATAAGACACAAGAATTTCGCTATGCATCACA
56401146 TTGTAAATTT
Statistics
Matches: 146, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (196 bp):
AGAAGTTTGCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTATCT
ATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATAAAATTAAAAAGA
ATCATAAGACACAAGAATTTCGCTATGCATCACAACGCTATATCTTAAGAAGAATCATAAGACCC
G
Found at i:56401500 original size:142 final size:139
Alignment explanation
Indices: 56400968--56402039 Score: 892
Period size: 143 Copynumber: 7.5 Consensus size: 139
56400958 TCTTAAGAAG
* * * * * *
56400968 AATCATAAGACCCGAGAAGTTTGTTATGCATCTCATGGTAAATTTCCATTTTAACCTTTTAAAAA
1 AATCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
* * * * *
56401033 TTTATACTTTATCTATAATTCCGTAACGGGCTTTGCCTT-AAAATTTGAGTTTCAATATTTAAAA
66 TTTATACTTTATCTTTAATT-CGTAACCGAC-TTGCCTTGAAAA-TCGAGTTTTAATATTTAAAA
56401097 ATAAAATTAAAA
128 ATAAAATTAAAA
* * *
56401109 AGATTCATAATACACGAGAA-TTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAA
1 A-A-TCATAAAACACAAGAAGTTT-GCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAA
** * * * * * **
56401173 AAATTGGTACTTTAAT-TTTAATTTGGTAACTGACTTGGCTTCGAAATTAGAACTTTAATATTTA
63 AAATTTATACTTT-ATCTTTAA-TTCGTAACCGACTTGCCTT-GAAAATCGAGTTTTAATATTTA
*
56401237 ATAATTAAAA-T-AAA
125 A-AAATAAAATTAAAA
* * *
56401251 AATCATAAAACACAATAAGTTTGCAATGCATCACAT-ATAAATTTCCATTTTAACCTCTTAAAAA
1 AATCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
* * * *
56401315 TTTATAATTTATC-TTGATTCTGTAACCGACGTTGCCTTGAAAATCAAATTTTAATATTTAAAAA
66 TTTATACTTTATCTTTAATTC-GTAACCGAC-TTGCCTTGAAAATCGAGTTTTAATATTTAAAAA
56401379 TAAAATTAAATGA
129 TAAAATTAAA--A
* * * **
56401392 AATCATAAAACGCAACAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAATT
1 AATCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
* * * * * *
56401457 TTTAAACTTTATATTTAATTGCATAACAGACTT-CCATTCAAAATTCGAGTTTTAATATTAAAAA
66 TTTATACTTTATCTTTAATT-CGTAACCGACTTGCC-TTGAAAA-TCGAGTTTTAATATTTAAAA
*
56401521 ATTAAATTAAAA
128 ATAAAATTAAAA
* * * ** *
56401533 AGA--ATAATAACACATGAGAACTTCGCTATGCATCAAATTATGAATTTCCATTTTAACCTCTTA
1 A-ATCATAA-AACACA--AGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTA
* * ** * * * *
56401596 AAAATATATACTTTAACTTTTTCTTTGATTTTATAACCGACTTCGTCATGAAATTTGAGTTTTAA
62 AAAAT-T-TA---T-ACTTTATCTTT-AATTCGTAACCGACTT-GCCTTGAAAATCGAGTTTTAA
56401661 TATTTAAAAATAAAATTAAAA
119 TATTTAAAAATAAAATTAAAA
* * * * *
56401682 AGATTCATATAACACAAGAAGTTTTCCATACATCGCATGGTAAATTTCCATTTTAA-CTACTTAA
1 A-A-TCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT-CTTAA
* * * * * *
56401746 AAATTTATATTTTATCTTTAATTCCGTAACGGAGTAAGCCTT-AAAATTCAAGTTTCAATATTTA
63 AAATTTATACTTTATCTTTAATT-CGTAACCGACT-TGCCTTGAAAA-TCGAGTTTTAATATTTA
* *
56401810 TAAATAAACTTAAAA
125 AAAATAAAATTAAAA
* * * * ** *
56401825 CAATCAGAAGACACGAGAACTTTGCTATGCATCACATTTTAAATTTCCATTTTAACCTGTTAAAA
1 -AATCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAA
* * * *
56401890 ATTTATA-TTGTATCTTTGATTCTGTAATCGACTTTGCCTTGAAATTCGAATTTTAATATTTAAA
65 ATTTATACTT-TATCTTTAATTC-GTAACCGAC-TTGCCTTGAAAATCGAGTTTTAATATTTAAA
**
56401954 AACGAAATTAAAA
127 AATAAAATTAAAA
* * ** * * *
56401967 AATCATAAAACACTAGTAGTTTATTGTTCTTCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
1 AATCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
56402032 TTTATACT
66 TTTATACT
56402040 GTGAAAAAAT
Statistics
Matches: 740, Mismatches: 143, Indels: 95
0.76 0.15 0.10
Matches are distributed among these distances:
137 9 0.01
138 33 0.04
139 42 0.06
140 30 0.04
141 108 0.15
142 165 0.22
143 221 0.30
144 18 0.02
145 2 0.00
147 2 0.00
148 3 0.00
149 90 0.12
150 7 0.01
151 7 0.01
152 3 0.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (139 bp):
AATCATAAAACACAAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
TTTATACTTTATCTTTAATTCGTAACCGACTTGCCTTGAAAATCGAGTTTTAATATTTAAAAATA
AAATTAAAA
Found at i:56401723 original size:292 final size:280
Alignment explanation
Indices: 56400981--56402039 Score: 1023
Period size: 281 Copynumber: 3.7 Consensus size: 280
56400971 CATAAGACCC
* * * ** * *
56400981 GAGAAGTTTGTTATGCATCTCATGGTAAATTTCCATTTTAACCTTTTAAAAATTTATACTTTATC
1 GAGAACTTTGCTATGCATCACATTATAAATTTCCATTTTAACCTCTTAAAAATTTATAATTTATC
* * * * * * * * *
56401046 TATAATTCCGTAACGGGCTTTGCCTTAAAATTTGAGTTTCAATATTTAAAAATAAAATTAAAAAG
66 TTTGATTCTGTAACCGAC-TTGCCTTGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAA-
* * *
56401111 ATTCATAATACACGAGAA--TTTCGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAA
129 A-TCATAAAACACAAGAAGTTTTC-C-ATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAA
** * * * * **
56401174 AATTGGTACTTTA-ATTTTAATTTG-GTAACTGACTTGGCTTCGAAATTAGAACTTTAATATTTA
191 AATTTATACTTTATA-TTTAA-TTGCGTAACAGACTT-CCTTCAAAATTCGAGTTTTAATATTTA
* *
56401237 ATAATTAAAATAAAAATC-ATAAAACACA
253 AAAATTAAATTAAAAA-CAATAAAACACA
* * *
56401265 -ATAAGTTTGCAATGCATCACA-TATAAATTTCCATTTTAACCTCTTAAAAATTTATAATTTATC
1 GAGAACTTTGCTATGCATCACATTATAAATTTCCATTTTAACCTCTTAAAAATTTATAATTTATC
* *
56401328 -TTGATTCTGTAACCGACGTTGCCTTGAAAATCAAATTTTAATATTTAAAAATAAAATTAAATGA
66 TTTGATTCTGTAACCGAC-TTGCCTTGAAATTCGAATTTTAATATTTAAAAATAAAATTAAA--A
* * * **
56401392 AATCATAAAACGCAACAAGTTTTCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAATT
128 AATCATAAAACACAAGAAGTTTTCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
* * *
56401457 TTTAAACTTTATATTTAATTGCATAACAGACTTCCATTCAAAATTCGAGTTTTAATATTAAAAAA
193 TTTATACTTTATATTTAATTGCGTAACAGACTTCC-TTCAAAATTCGAGTTTTAATATTTAAAAA
*
56401522 TTAAATTAAAAAGAATAATAACACA
257 TTAAATTAAAAACAATAA-AACACA
* * *
56401547 TGAGAACTTCGCTATGCATCAAATTATGAATTTCCATTTTAACCTCTTAAAAATATATACTTTAA
1 -GAGAACTTTGCTATGCATCACATTATAAATTTCCATTTTAACCTCTTAAAAAT-T-TA---TAA
* * * * * * *
56401612 CTTTTTCTTTGATTTTATAACCGACTTCGTCATGAAATTTGAGTTTTAATATTTAAAAATAAAAT
60 -TTTATCTTTGATTCTGTAACCGACTT-GCCTTGAAATTCGAATTTTAATATTTAAAAATAAAAT
* * *
56401677 TAAAAAGATTCATATAACACAAGAAGTTTTCCATACATCGCATGGTAAATTTCCATTTTAA-CTA
123 TAAAAA-A-TCATAAAACACAAGAAGTTTTCCATGCATCACATGGTAAATTTCCATTTTAACCT-
* * * * * * * *
56401741 CTTAAAAATTTATATTTTATCTTTAATTCCGTAACGGAGTAAGCCTT-AAAATTCAAGTTTCAAT
185 CTTAAAAATTTATACTTTATATTTAATTGCGTAACAGACT--TCCTTCAAAATTCGAGTTTTAAT
*
56401805 ATTTATAAA-TAAACTT-AAAACAATCAGAAGACAC-
248 ATTTAAAAATTAAA-TTAAAAACAAT-A-AA-ACACA
* *
56401839 GAGAACTTTGCTATGCATCACATTTTAAATTTCCATTTTAACCTGTTAAAAATTTAT-ATTGTAT
1 GAGAACTTTGCTATGCATCACATTATAAATTTCCATTTTAACCTCTTAAAAATTTATAATT-TAT
* **
56401903 CTTTGATTCTGTAATCGACTTTGCCTTGAAATTCGAATTTTAATATTTAAAAACGAAATTAAAAA
65 CTTTGATTCTGTAACCGAC-TTGCCTTGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAA
* * ** * *
56401968 ATCATAAAACACTAGTAGTTTAT-TGTTCTTCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
129 ATCATAAAACACAAGAAGTTT-TCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAA
56402032 TTTATACT
193 TTTATACT
56402040 GTGAAAAAAT
Statistics
Matches: 640, Mismatches: 102, Indels: 67
0.79 0.13 0.08
Matches are distributed among these distances:
280 4 0.01
281 158 0.25
282 46 0.07
283 80 0.12
284 22 0.03
285 85 0.13
286 4 0.01
287 2 0.00
289 2 0.00
290 6 0.01
291 69 0.11
292 153 0.24
293 7 0.01
294 2 0.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (280 bp):
GAGAACTTTGCTATGCATCACATTATAAATTTCCATTTTAACCTCTTAAAAATTTATAATTTATC
TTTGATTCTGTAACCGACTTGCCTTGAAATTCGAATTTTAATATTTAAAAATAAAATTAAAAAAT
CATAAAACACAAGAAGTTTTCCATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAATTT
ATACTTTATATTTAATTGCGTAACAGACTTCCTTCAAAATTCGAGTTTTAATATTTAAAAATTAA
ATTAAAAACAATAAAACACA
Found at i:56407270 original size:143 final size:140
Alignment explanation
Indices: 56406847--56407286 Score: 472
Period size: 142 Copynumber: 3.1 Consensus size: 140
56406837 AATTCTAACA
* * * * * *
56406847 TATACTTTATCTTTCATTTCATAACGGAGTTCGCCTCAAAATTCAAGTTTTAATAGTTAAAAATG
1 TATACTTTATCTTT-AATTCGTAACGGACTTAGCCTCAAAATTCGAGTTTTAATATTTAAAAATG
* **
56406912 AAATTAAAAAGAATCATAAGACATGAGAAGTTTGCTATGTATCACATGGTAAATTTTTGTTTTAA
65 -AATTAAAAAGAATCATAAGACACGAGAAGTTTGCTATGTATCACATGGTAAA-TTTCATTTTAA
* *
56406977 GCTTTTAAAAATT
128 CCTCTTAAAAATT
* * * ** * * *
56406990 TATACTTTATATTTGATTTGTTCCCGACTTAGTCTCGAAATTCG-GATTTTAATATTTAAAAATG
1 TATACTTTATCTTTAATTCGTAACGGACTTAGCCTCAAAATTCGAG-TTTTAATATTTAAAAAT-
* * * *
56407054 GAATTAAAAA-AATCGTAAAACACGAGAAGTTTGCCATGTATCACGTGGTAAACTTTCATTTTAA
64 GAATTAAAAAGAATCATAAGACACGAGAAGTTTGCTATGTATCACATGGTAAA-TTTCATTTTAA
56407118 CCTCTTAAAAATT
128 CCTCTTAAAAATT
* * *
56407131 TATACTTTATCTATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATG
1 TATACTTTATCTTTAATT-CGTAACGGACTTAGCCTCAAAATTCGAGTTTTAATATTTAAAAATG
* * * * *
56407196 AAGTTAAAAAGAATCATAAGACACGAGCACTTCT-CTATGCATCACATTGTAAATTTCCCTTTTA
65 AA-TTAAAAAGAATCATAAGACACGAGAAGTT-TGCTATGTATCACATGGTAAATTT-CATTTTA
56407260 ACCTCTTAAAAATT
127 ACCTCTTAAAAATT
* *
56407274 TACACTATATCTT
1 TATACTTTATCTT
56407287 AAGAAGAATG
Statistics
Matches: 242, Mismatches: 47, Indels: 16
0.79 0.15 0.05
Matches are distributed among these distances:
141 76 0.31
142 88 0.36
143 77 0.32
144 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (140 bp):
TATACTTTATCTTTAATTCGTAACGGACTTAGCCTCAAAATTCGAGTTTTAATATTTAAAAATGA
ATTAAAAAGAATCATAAGACACGAGAAGTTTGCTATGTATCACATGGTAAATTTCATTTTAACCT
CTTAAAAATT
Found at i:56407334 original size:86 final size:86
Alignment explanation
Indices: 56407199--56407371 Score: 231
Period size: 86 Copynumber: 2.0 Consensus size: 86
56407189 AAAAATGAAG
* * *
56407199 TTAAAAAGAATCATAAGACACGAGCACTTCTCTATGCATCACATTGTAAATTTCCCTTTTAACCT
1 TTAAAAAGAATCATAAGACACGAGAACTTCTCTATGCATCACATGGTAAATTTCCATTTTAACCT
56407264 CTTAAAAATTTACACTATATC
66 CTTAAAAATTTACACTATATC
* * * * *
56407285 TTAAGAAGAATGATAAGACCCGAGAAGTT-TGCTATGCATCACATGGTAAATTTTCATTTTAACC
1 TTAAAAAGAATCATAAGACACGAGAACTTCT-CTATGCATCACATGGTAAATTTCCATTTTAACC
* * *
56407349 TTTTAAAAATTTATACTTTATC
65 TCTTAAAAATTTACACTATATC
56407371 T
1 T
56407372 ATAATTTCGT
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
85 1 0.01
86 74 0.99
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (86 bp):
TTAAAAAGAATCATAAGACACGAGAACTTCTCTATGCATCACATGGTAAATTTCCATTTTAACCT
CTTAAAAATTTACACTATATC
Found at i:56407480 original size:229 final size:229
Alignment explanation
Indices: 56407076--56407504 Score: 671
Period size: 229 Copynumber: 1.9 Consensus size: 229
56407066 TCGTAAAACA
* *
56407076 CGAGAAGTTTGCCATGTATCACGTGGTAAACTTTCATTTTAACCTCTTAAAAATTTATACTTTAT
1 CGAGAAGTTTGCCATGCATCACATGGTAAACTTTCATTTTAACCTCTTAAAAATTTATACTTTAT
* * *
56407141 CTATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAGTTAAAAA
66 CTATAATTCCGTAACGGACTTTGCCTCAAAATTCGAATTTCAATACTTAAAAATGAAATTAAAAA
* **
56407206 GAATCATAAGACACGAGCACTTCTCTATGCATCACATTGTAAATTTCCCTTTTAACCTCTTAAAA
131 GAATCATAAGACACGAGAACTTCTCTATGCATCACATTGTAAATTTCCAATTTAACCTCTTAAAA
56407271 ATTTACACTATATCTTAAGAAGAATGATAAGACC
196 ATTTACACTATATCTTAAGAAGAATGATAAGACC
* * *
56407305 CGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCTTTTAAAAATTTATACTTTAT
1 CGAGAAGTTTGCCATGCATCACATGGTAAACTTTCATTTTAACCTCTTAAAAATTTATACTTTAT
* * *
56407370 CTATAATTTCGTAACGGACTTTGCTTCAAAATTCTAATTTCAATACTTAAAAATGAAATTAAAAA
66 CTATAATTCCGTAACGGACTTTGCCTCAAAATTCGAATTTCAATACTTAAAAATGAAATTAAAAA
* * * * *
56407435 GATTCATAATACACGAGAACTT-TGCTCTGCGTCACATTTTAAATTTCCAATTTAACCTCTTAAA
131 GAATCATAAGACACGAGAACTTCT-CTATGCATCACATTGTAAATTTCCAATTTAACCTCTTAAA
56407499 AATTTA
195 AATTTA
56407505 TACTTTAATT
Statistics
Matches: 180, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
228 1 0.01
229 179 0.99
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (229 bp):
CGAGAAGTTTGCCATGCATCACATGGTAAACTTTCATTTTAACCTCTTAAAAATTTATACTTTAT
CTATAATTCCGTAACGGACTTTGCCTCAAAATTCGAATTTCAATACTTAAAAATGAAATTAAAAA
GAATCATAAGACACGAGAACTTCTCTATGCATCACATTGTAAATTTCCAATTTAACCTCTTAAAA
ATTTACACTATATCTTAAGAAGAATGATAAGACC
Found at i:56407577 original size:143 final size:139
Alignment explanation
Indices: 56407305--56407939 Score: 693
Period size: 143 Copynumber: 4.5 Consensus size: 139
56407295 TGATAAGACC
* * *
56407305 CGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCTTTTAAAAATTTATACTTTAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * * * * * *
56407370 CTATAATTTCGTAACGGACTTTGCTTCAAAATTCTAATTTCAATACTTAAAAATGAAATTAAAAA
66 CTTTAA-TTCATAACCGAC-TTGCCTCGAAATTCGAATTTCAATATTTAAAAATGAAATTAAAAA
*
56407435 GATTCATAATACA
129 -A-TCATAAAACA
* * * * *
56407448 CGAGAACTTTGCTCTGCGTCACATTTTAAATTTCCAATTTAACCTCTTAAAAATTTATACTTTAA
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTT-A
* * * *
56407513 T-TTTGATTCAGTAATCGACTTGGCCTCGAAATTCGAA-TTCTAATA-TTAATAATTAAATTGAA
65 TCTTTAATTCA-TAACCGACTT-GCCTCGAAATTCGAATTTC-AATATTTAAAAATGAAATT-AA
56407575 AAAATCATAAAACA
126 AAAATCATAAAACA
* * *
56407589 CGAGAAGTTTGCAATGCATCACA-TATAAATTTCCATTTAAACCTCTTAAAAATTTATACTTTAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * * *
56407653 CTTTGATTCTATAACCGACGTTGCCTCGAAATTCAAATTTTAATATTTAAAAAAGAAATTAAAAA
66 CTTTAATTC-ATAACCGAC-TTGCCTCGAAATTCGAATTTCAATATTTAAAAATGAAATTAAAAA
*
56407718 ATAATAAAACA
129 ATCATAAAACA
* * * *
56407729 CGGGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATATTTTAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
* * *
56407794 CTTTAATTCCATAACCGACTTCGCCTAGAAATTTGAGTTTCAATATTTAAAAATGAAATTAAAAA
66 CTTTAATT-CATAACCGACTT-GCCTCGAAATTCGAATTTCAATATTTAAAAATGAAATT-AAAA
*
56407859 GAATCATAAGACA
128 -AATCATAAAACA
* * *** * * * * *
56407872 CAAGAACTTCATTGTGCATCACATTGTAAATTTCCTTTTTAACATCTTAAAAATTTACACTATAT
1 CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
56407937 CTT
66 CTT
56407940 AATAAGAATC
Statistics
Matches: 414, Mismatches: 63, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
139 2 0.00
140 107 0.26
141 128 0.31
142 26 0.06
143 149 0.36
144 2 0.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (139 bp):
CGAGAAGTTTGCTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAAAATTTATACTTTAT
CTTTAATTCATAACCGACTTGCCTCGAAATTCGAATTTCAATATTTAAAAATGAAATTAAAAAAT
CATAAAACA
Found at i:56407608 original size:370 final size:369
Alignment explanation
Indices: 56406915--56407655 Score: 879
Period size: 370 Copynumber: 2.0 Consensus size: 369
56406905 AAAAATGAAA
* * ** *
56406915 TTAAAAAGAATCATAAGACATGAGAAGTTTGCTATGTATCACATGGTAAATTTTTGTTTTAAGCT
1 TTAAAAAGAATCATAAGACACGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCT
* * ** * * * *
56406980 TTTAAAAATTTATACTTTATATTTGATTTGTTCCCGACTTAGTCTCGAAATTCGGATTTTAATAT
66 TTTAAAAATTTATACTTTATATATAATTTGTAACCGACTTAGTCTCAAAATTCGAATTTCAATAC
* * * * *
56407045 TTAAAAATGGAATTAAAAAAATCGTAAAACACGAGAAGTTTGCCATGTATCACGTGGTAAACTTT
131 TTAAAAATGAAATTAAAAAAATCATAAAACACGAGAACTTTGCCATGCATCACATGGTAAACTTT
* * *
56407110 CATTTTAACCTCTTAAAAATTTATACTTTATCTATAATTCCGTAACGGACTTTGCCTCAAAATTC
196 CAATTTAACCTCTTAAAAATTTATACTTTATCTATAATTCAGTAACGGACTTGGCCTCAAAATTC
* * * * *
56407175 GAGTTTCAATATTTAAAAATGAAGTTAAAAAGAATCATAAGACACGAGCACTTCTCTATGCATCA
261 GAATTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAACTTCTCAATGCATCA
* * *
56407240 CATTGTAAATTTCCCTTTTAACCTCTTAAAAATTTACACTATATC
326 CA-TATAAATTTCCATTTAAACCTCTTAAAAATTTACACTATATC
* * *
56407285 TTAAGAAGAATGATAAGACCCGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCT
1 TTAAAAAGAATCATAAGACACGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCT
* * * *
56407350 TTTAAAAATTTATACTTTATCTATAATTTCGTAACGGACTTTG-CTTCAAAATTCTAATTTCAAT
66 TTTAAAAATTTATACTTTATATATAATTT-GTAACCGACTTAGTC-TCAAAATTCGAATTTCAAT
* * * **
56407414 ACTTAAAAATGAAATTAAAAAGATTCATAATACACGAGAACTTTGCTC-TGCGTCACATTTTAAA
129 ACTTAAAAATGAAATTAAAAA-AATCATAAAACACGAGAACTTTGC-CATGCATCACATGGTAAA
* *
56407478 -TTTCCAATTTAACCTCTTAAAAATTTATACTTTAAT-TTTGATTCAGTAATC-GACTTGGCCTC
192 CTTT-CAATTTAACCTCTTAAAAATTTATACTTT-ATCTATAATTCAGTAA-CGGACTTGGCCTC
* * * * *
56407540 GAAATTCGAA-TTCTAATA-TTAATAATTAAATTGAAAA-AATCATAAAACACGAGAAGTT-TGC
254 AAAATTCGAATTTC-AATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAACTTCT-C
* *
56407601 AATGCATCACATATAAATTTCCATTTAAACCTCTTAAAAATTTATACTTTATC
317 AATGCATCACATATAAATTTCCATTTAAACCTCTTAAAAATTTACACTATATC
56407654 TT
1 TT
56407656 TGATTCTATA
Statistics
Matches: 312, Mismatches: 50, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
369 40 0.13
370 113 0.36
371 64 0.21
372 91 0.29
373 4 0.01
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (369 bp):
TTAAAAAGAATCATAAGACACGAGAAGTTTGCTATGCATCACATGGTAAATTTTCATTTTAACCT
TTTAAAAATTTATACTTTATATATAATTTGTAACCGACTTAGTCTCAAAATTCGAATTTCAATAC
TTAAAAATGAAATTAAAAAAATCATAAAACACGAGAACTTTGCCATGCATCACATGGTAAACTTT
CAATTTAACCTCTTAAAAATTTATACTTTATCTATAATTCAGTAACGGACTTGGCCTCAAAATTC
GAATTTCAATATTTAAAAATGAAATTAAAAAGAATCATAAAACACGAGAACTTCTCAATGCATCA
CATATAAATTTCCATTTAAACCTCTTAAAAATTTACACTATATC
Found at i:56407987 original size:86 final size:86
Alignment explanation
Indices: 56407852--56408010 Score: 210
Period size: 86 Copynumber: 1.8 Consensus size: 86
56407842 AAAAATGAAA
* * * *
56407852 TTAAAAAGAATCATAAGACACAAGAACTTCATTGTGCATCACATTGTAAATTTCCTTTTTAACAT
1 TTAAAAAGAATCATAAGACACAAGAACTTCACTATGCATCACATAGTAAATTTCCATTTTAACAT
56407917 CTTAAAAATTTACACTATATC
66 CTTAAAAATTTACACTATATC
* * * ** * *
56407938 TTAATAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCGCATAGTAAATTTCCATTTTAACCT
1 TTAAAAAGAATCATAAGACACAAGAACTTCACTATGCATCACATAGTAAATTTCCATTTTAACAT
*
56408003 TTTAAAAA
66 CTTAAAAA
56408011 CTTATACTTT
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
86 61 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (86 bp):
TTAAAAAGAATCATAAGACACAAGAACTTCACTATGCATCACATAGTAAATTTCCATTTTAACAT
CTTAAAAATTTACACTATATC
Found at i:56408261 original size:369 final size:368
Alignment explanation
Indices: 56407577--56408273 Score: 853
Period size: 369 Copynumber: 1.9 Consensus size: 368
56407567 AAATTGAAAA
* *
56407577 AATCATAAAACACGAGAAGTTTGCAATGCATCACATATAAATTTCCATTTAAACCTCTTAAAAAT
1 AATCATAAAACACAAGAAGTTTGCAATGCATCACATATAAATTTCCATTTAAACCTCTTAAAAAC
* * * *
56407642 TTATACTTTATCTTTGATTCTATAACCGACGTTGCCTCGAAATTCAAATTTTAATATTTAAAAAA
66 TTATACTTTATCTATAATTCTATAACCGACGTTGCCTCAAAATTCAAATTTCAATATTTAAAAAA
* * *
56407707 GAAATTAAAAAATAATAAAACACGGGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAAC
131 GAAATT-AAAAATAATAAAACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAAC
* * * **
56407772 CTCTTAAAATTTTATATTTTATCTTTAATTCCATAACCGACTTCGCCTAGAAATTTGAGTTTCAA
195 CTCTTAAAAATATATATTTTATCTTTAATCCCATAACCGACTTCGCCTAGAAATTCAAGTTTCAA
* * *
56407837 TATTTAAAAATGAAATTAAAAAGAATCATAAGACACAAGAACTTCATTGTGCATCACATTGTAAA
260 TATTTAAAAATGAAATTAAAAAGAATCATAAGACACAAGAACTTCACTATGCATCACATGGTAAA
56407902 TTTCCTTTTTAACATCTTAAAAATTTACACTATATCTTAATAAG
325 TTTCCTTTTTAACATCTTAAAAATTTACACTATATCTTAATAAG
* * * * * *
56407946 AATCATAAGACCCAAGAAGTTTGCTATGCATCGCATAGTAAATTTCCATTTTAACCTTTTAAAAA
1 AATCATAAAACACAAGAAGTTTGCAATGCATCACATA-TAAATTTCCATTTAAACCTCTTAAAAA
* * ** * * * * *
56408011 CTTATACTTTGTCTATAATTC-CTAATGGACTTTTCCTCAAAATTCGAGTTTCAATATTTAATAA
65 CTTATACTTTATCTATAATTCTATAACCGACGTTGCCTCAAAATTCAAATTTCAATATTTAAAAA
* * * * * * *
56408075 TGAAATT-AAAATGATTCATACATGAGAACTTCGCTATGTATCACATTGTAAATTTCCATTTTAA
130 AGAAATTAAAAAT-AATAAAACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAA
* * * *
56408139 CCTCTTAAAAAATATATACTTTT-TCTTTGATCCCGTAA-TGAACTTCGCCTCGAAATTCAAGTT
194 CCTCTT-AAAAATATATA-TTTTATCTTTAATCCCATAACCG-ACTTCGCCTAGAAATTCAAGTT
* * * * ** **
56408202 TGAATATTTAATATTTAAATTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGG
256 TCAATATTTAAAAATGAAATTAAAAAGAATCATAAGACACAAGAACTTCACTATGCATCACATGG
56408267 TAAATTT
321 TAAATTT
56408274 TCATTTGAAT
Statistics
Matches: 272, Mismatches: 51, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
367 5 0.02
368 49 0.18
369 172 0.63
370 46 0.17
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.36
Consensus pattern (368 bp):
AATCATAAAACACAAGAAGTTTGCAATGCATCACATATAAATTTCCATTTAAACCTCTTAAAAAC
TTATACTTTATCTATAATTCTATAACCGACGTTGCCTCAAAATTCAAATTTCAATATTTAAAAAA
GAAATTAAAAATAATAAAACACGAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACC
TCTTAAAAATATATATTTTATCTTTAATCCCATAACCGACTTCGCCTAGAAATTCAAGTTTCAAT
ATTTAAAAATGAAATTAAAAAGAATCATAAGACACAAGAACTTCACTATGCATCACATGGTAAAT
TTCCTTTTTAACATCTTAAAAATTTACACTATATCTTAATAAG
Found at i:56408273 original size:653 final size:650
Alignment explanation
Indices: 56406876--56408582 Score: 2273
Period size: 653 Copynumber: 2.6 Consensus size: 650
56406866 CATAACGGAG
* * *
56406876 TTCGCCTCAAAATTCAAGTTTTAATAGTTAAAAATGAAATTAAAAAGAATCATAAGACATGAGAA
1 TTCGCCTCGAAATTCAAG-TTTAATA-TTAATAATTAAATTAAAAAGAATCATAAGACATGAGAA
* ** * * * *
56406941 GTTTGCTATGTATCACATGGTAAATTTTTGTTTTAAGCTTTTAAAAATTTATACTTTATATTTGA
64 GTTTGCTATGCATCACATGGTAAATTTTCATTTAAACCTCTTAAAAATTTATACTTTATCTTTGA
* ** * ** * *
56407006 TT-TGTTCCCGACTTAGTCTCGAAATTCGGATTTTAATATTTAAAAATGGAATTAAAAAAATCGT
129 TTCTATAACCGACTT-GCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATT-AAAAAATCAT
* * * *
56407070 AAAACACGAGAAGTTTGCCATGTATCACGTGGTAAACTTT-CATTTTAACCTCTTAAAAATTTAT
192 AAAACACGAGAAGTTTGCTATGCATCACATGGTAAA-TTTCCATTTTAACCTCTTAAAATTTTAT
* * * *
56407134 ACTTTATCTATAATTCCGTAACGGACTTTGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAG
256 ACTTTATCTTTAATTCCGTAACAGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAA
* * *
56407199 TTAAAAAGAATCATAAGACACGAGCACTTCTCTATGCATCACATTGTAAATTTCCCTTTTAACCT
321 TTAAAAAGAATCATAAGACACAAGAACTTCT-TATGCATCACATTGTAAATTTCCATTTTAACCT
* *
56407264 CTTAAAAATTTACACTATATCTTAAGAAGAATGATAAGACCCGAGAAGTTTGCTATGCATCACAT
385 CTTAAAAATTTACACTATATCTTAAGAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCACAT
* * * *
56407329 GGTAAATTTTCATTTTAACCTTTTAAAAATTTATACTTTATCTATAATTTCGTAACGGACTTTGC
450 AGTAAATTTCCATTTTAACCTTTTAAAAACTTATACTTTATCTATAATTTCCTAACGGACTTTGC
* * *
56407394 TTCAAAATTCTAATTTCAATACTTAAAAATGAAATTAAAAAGATTCATAATACACGAGAACTTTG
515 CTCAAAATTCGAATTTCAATACTTAAAAATGAAATTAAAAAGATTC--AATACACGAGAACTTCG
* * * * *
56407459 CTCTGCGTCACATTTTAAATTTCCAATTTAACCTCTTAAAAATTTATACTTTAATTTTGATTCAG
578 CTATGCATCACATTGTAAATTTCCAATTTAACCTCTTAAAAATATATACTTTAATTTTGATCCAG
56407524 TAATCGAC
643 TAATCGAC
* * * *
56407532 TTGGCCTCGAAATTCGAA-TTCTAATATTAATAATTAAATTGAAAA-AATCATAAAACACGAGAA
1 TTCGCCTCGAAATTC-AAGTT-TAATATTAATAATTAAATTAAAAAGAATCATAAGACATGAGAA
* * *
56407595 GTTTGCAATGCATCACAT-ATAAATTTCCATTTAAACCTCTTAAAAATTTATACTTTATCTTTGA
64 GTTTGCTATGCATCACATGGTAAATTTTCATTTAAACCTCTTAAAAATTTATACTTTATCTTTGA
* *
56407659 TTCTATAACCGACGTTGCCTCGAAATTCAAATTTTAATATTTAAAAAAGAAATTAAAAAATAATA
129 TTCTATAACCGAC-TTGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAATCATA
* *
56407724 AAACACGGGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATAT
193 AAACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATAC
* * *
56407789 TTTATCTTTAATTCCATAACCGACTTCGCCT-AGAAATTTGAGTTTCAATATTTAAAAATGAAAT
258 TTTATCTTTAATTCCGTAACAGACTTCGCCTCA-AAATTCGAGTTTCAATATTTAAAAATGAAAT
* * *
56407853 TAAAAAGAATCATAAGACACAAGAACTTCATTGTGCATCACATTGTAAATTTCCTTTTTAACATC
322 TAAAAAGAATCATAAGACACAAGAACTTC-TTATGCATCACATTGTAAATTTCCATTTTAACCTC
* *
56407918 TTAAAAATTTACACTATATCTTAATAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCGCATA
386 TTAAAAATTTACACTATATCTTAAGAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCACATA
* * *
56407983 GTAAATTTCCATTTTAACCTTTTAAAAACTTATACTTTGTCTATAA-TTCCTAATGGACTTTTCC
451 GTAAATTTCCATTTTAACCTTTTAAAAACTTATACTTTATCTATAATTTCCTAACGGACTTTGCC
* * * * *
56408047 TCAAAATTCGAGTTTCAATATTTAATAATGAAATTAAAATGATTC-ATACATGAGAACTTCGCTA
516 TCAAAATTCGAATTTCAATACTTAAAAATGAAATTAAAAAGATTCAATACACGAGAACTTCGCTA
* * * *
56408111 TGTATCACATTGTAAATTTCCATTTTAACCTCTTAAAAAATATATACTTT-TTCTTTGATCCCGT
581 TGCATCACATTGTAAATTTCCAATTTAACCTCTT-AAAAATATATACTTTAAT-TTTGATCCAGT
56408175 AAT-GAAC
644 AATCG-AC
*
56408182 TTCGCCTCGAAATTCAAGTTTGAATATTTAATATTTAAATTAAAAAGAATCATAAGACATGAGAA
1 TTCGCCTCGAAATTCAAGTTT-AATA-TTAATAATTAAATTAAAAAGAATCATAAGACATGAGAA
* * ** * * *
56408247 CTTTGCTATGCATCACATGGTAAATTTTCATTTGAATGTCTCAAAATTTTATACTTTACCTTTGA
64 GTTTGCTATGCATCACATGGTAAATTTTCATTTAAACCTCTTAAAAATTTATACTTTATCTTTGA
*
56408312 TTCTATAACCGACTTTGCCTCTAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAGATCAT
129 TTCTATAACCGAC-TTGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAA-ATCAT
* * * * * *
56408377 AAAACATGAGAACTGTGCTATGCATCAAATGGTATATTTCCATTTTAACGTCTTAAAATTTTATA
192 AAAACACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATA
* * * * * *
56408442 CTTTATCTTTCATTTCGTAACAGAGTTCTCCTCACAATTCGAGTTTCAATAGTTAAAAATGAAAT
257 CTTTATCTTTAATTCCGTAACAGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAAT
* * *
56408507 TAAAAAGAATCATAAGACACAAGAACTTCGTCATGCATCACATTGTAAATTTTCATTTTAACCTT
322 TAAAAAGAATCATAAGACACAAGAACTTC-TTATGCATCACATTGTAAATTTCCATTTTAACCTC
56408572 TTAAAAATTTA
386 TTAAAAATTTA
56408583 TAGTCTATAT
Statistics
Matches: 919, Mismatches: 115, Indels: 36
0.86 0.11 0.03
Matches are distributed among these distances:
649 51 0.06
650 48 0.05
651 17 0.02
652 90 0.10
653 415 0.45
654 257 0.28
655 21 0.02
656 18 0.02
657 2 0.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (650 bp):
TTCGCCTCGAAATTCAAGTTTAATATTAATAATTAAATTAAAAAGAATCATAAGACATGAGAAGT
TTGCTATGCATCACATGGTAAATTTTCATTTAAACCTCTTAAAAATTTATACTTTATCTTTGATT
CTATAACCGACTTGCCTCGAAATTCAAATTTTAATATTTAAAAATGAAATTAAAAAATCATAAAA
CACGAGAAGTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAATTTTATACTTT
ATCTTTAATTCCGTAACAGACTTCGCCTCAAAATTCGAGTTTCAATATTTAAAAATGAAATTAAA
AAGAATCATAAGACACAAGAACTTCTTATGCATCACATTGTAAATTTCCATTTTAACCTCTTAAA
AATTTACACTATATCTTAAGAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCACATAGTAAA
TTTCCATTTTAACCTTTTAAAAACTTATACTTTATCTATAATTTCCTAACGGACTTTGCCTCAAA
ATTCGAATTTCAATACTTAAAAATGAAATTAAAAAGATTCAATACACGAGAACTTCGCTATGCAT
CACATTGTAAATTTCCAATTTAACCTCTTAAAAATATATACTTTAATTTTGATCCAGTAATCGAC
Found at i:56408365 original size:143 final size:143
Alignment explanation
Indices: 56407938--56408976 Score: 942
Period size: 143 Copynumber: 7.3 Consensus size: 143
56407928 ACACTATATC
* *** * * *
56407938 TTAATAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCGCATAGTAAATTTCCATTTTAACCT
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
* * * * * * ** * *
56408003 TTTAAAAACTTATACTTTGTCTATAATTC-CTAATGGACTTTTCCTCAAAATTCGAGTTTCAATA
66 CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCGAGTTTCAATA
*
56408067 TTTAATAATGAAA
131 TTTAAAAATGAAA
* * * * *
56408080 TTAAAATGATTCAT---ACATGAGAACTTCGCTATGTATCACATTGTAAATTTCCATTTTAACCT
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
* * * * * * * *
56408142 CTTAAAAAATATATACTTTTTCTTTGATCCCGTAA-TGAACTTCGCCTCGAAATTCAAGTTTGAA
66 CTT-AAAAATTTATACTTTATCTTTGATTCTGTAACCG-ACTTTGCCTCGAAATTCGAGTTTCAA
* * *
56408206 TATTTAATATTTAAA
129 TATTTAAAAATGAAA
* * **
56408221 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTTCATTTGAATGT
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
* * * * * * * *
56408286 CTCAAAATTTTATACTTTACCTTTGATTCTATAACCGACTTTGCCTCTAAATTCAAATTTTAATA
66 CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCGAGTTTCAATA
56408351 TTTAAAAATGAAA
131 TTTAAAAATGAAA
* * * * *
56408364 TTAAAAAG-ATCATAAAACATGAGAACTGTGCTATGCATCAAATGGTATATTTCCATTTTAACGT
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
* * * *
56408428 CTTAAAATTTTATACTTTATCTTTCATT-TCGTAACAGAGTTCT-CCTC-ACAATTCGAGTTTCA
66 CTTAAAAATTTATACTTTATCTTTGATTCT-GTAACCGACTT-TGCCTCGA-AATTCGAGTTTCA
*
56408490 ATAGTTAAAAATGAAA
128 ATATTTAAAAATGAAA
** * * *
56408506 TTAAAAAGAATCATAAGACACAAGAACTTCG-TCATGCATCACATTGTAAATTTTCATTTTAACC
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCT-ATGCATCACATGGTAAATTTCCATTTTAACC
* * * * * * * * * * *
56408570 TTTTAAAAATTTATAGTCTATATTTGATTATGTAATCGACTTAGTCTCGAAATTTGAATTTTAAT
65 TCTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCGAGTTTCAAT
56408635 ATTTAAAAATGAAA
130 ATTTAAAAATGAAA
* * * * *
56408649 TTAAAAAAAATCAT--TACATGAGAAGTTTGCTATGCATCACATCGTAAATTTTCATTTTAACCT
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
* * * *** * * *
56408712 CTTAAAAATTTATATTTTATCTATAATTCTGTAGTGGACTTTGTCTCAAAATTTGAGTTTCAATA
66 CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCGAGTTTCAATA
*
56408777 TTTAAAAATGAAG
131 TTTAAAAATGAAA
* * *
56408790 TTAAAAAGAATCATAAGACATGAGCACTTTGCTATGCATCACATTGTAAATTTCCATTTGAACCT
1 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
* * * ** * *
56408855 TTTAAAAACTTATACTTTA-CTTTTGATTCTGTAACCAACTTCT-CCTCGAAATTTAAATTTAAA
66 CTTAAAAATTTATACTTTATC-TTTGATTCTGTAACCGACTT-TGCCTCGAAATTCGAGTTTCAA
*
56408918 TTTTTAAAAAT-AAA
129 TATTTAAAAATGAAA
** * * *
56408932 CTTCCAAA-AATCATAAAATACGAGAGA-TTTGCTATGCATCACATG
1 -TTAAAAAGAATCATAAGACATGAGA-ACTTTGCTATGCATCACATG
56408977 AATTTGTTAC
Statistics
Matches: 730, Mismatches: 145, Indels: 44
0.79 0.16 0.05
Matches are distributed among these distances:
139 42 0.06
140 21 0.03
141 169 0.23
142 165 0.23
143 286 0.39
144 47 0.06
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (143 bp):
TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTCCATTTTAACCT
CTTAAAAATTTATACTTTATCTTTGATTCTGTAACCGACTTTGCCTCGAAATTCGAGTTTCAATA
TTTAAAAATGAAA
Found at i:56408829 original size:284 final size:283
Alignment explanation
Indices: 56407938--56408975 Score: 1027
Period size: 284 Copynumber: 3.7 Consensus size: 283
56407928 ACACTATATC
* * * * * *
56407938 TTAATAAGAATCATAAGACCCAAGAAGTTTGCTATGCATCGCATAGTAAATTTCCATTTTAACCT
1 TTAAAAAGAATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTGAACCT
* * * * ** * * * * *
56408003 TTTAAAAACTTATACTTTGTCTATAATTC-CTAATGGACTTTTCCTCAAAATTCGAGTTTCAATA
66 TTTAAAAACTTATACTTTATCTTTGATTCTGTAACCGACTTGTCCTCGAAATTCAAATTTTAATA
* * * * * *
56408067 TTTAATAATGAAATTAAAATGATTCAT-ACATGAGAACTTCGCTATGTATCACATTGTAAATTTC
131 TTTAAAAATGAAATTAAAA-AAATCATAACATGAGAACTTTGCTATGCATCACATCGTAAATTTC
* * * * * * *
56408131 CATTTTAACCTCTTAAAAAATATATACTTTT-TCTTTGATCCCGTAATGAACTTCGCCTCGAAAT
195 CATTTTAACCTCTT-AAAAATTTATA-TTTTATCTTTAATTCTGTAATGGACTTTGCCTCAAAAT
* * * * *
56408195 TCAAGTTTGAATATTTAATATTTAAA
258 TCGAGTTTCAATATTTAAAAATGAAA
** * * **
56408221 TTAAAAAGAATCATAAGACATGAGAACTTTGCTATGCATCACATGGTAAATTTTCATTTGAATGT
1 TTAAAAAGAATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTGAACCT
* * ** * * *
56408286 CTCAAAATTTTATACTTTACCTTTGATTCTATAACCGACTT-TGCCTCTAAATTCAAATTTTAAT
66 TTTAAAAACTTATACTTTATCTTTGATTCTGTAACCGACTTGT-CCTCGAAATTCAAATTTTAAT
* * * * *
56408350 ATTTAAAAATGAAATTAAAAAGATCATAAAACATGAGAACTGTGCTATGCATCAAATGGTATATT
130 ATTTAAAAATGAAATTAAAAAAATCAT--AACATGAGAACTTTGCTATGCATCACATCGTAAATT
* * * * ** * *
56408415 TCCATTTTAACGTCTTAAAATTTTATACTTTATCTTTCATT-TCGTAACAGAGTTCT-CCTCACA
193 TCCATTTTAACCTCTTAAAAATTTATATTTTATCTTTAATTCT-GTAATGGACTT-TGCCTCAAA
*
56408478 ATTCGAGTTTCAATAGTTAAAAATGAAA
256 ATTCGAGTTTCAATATTTAAAAATGAAA
* * *
56408506 TTAAAAAGAATCATAAGACACAAGAACTTCG-TCATGCATCACATTGTAAATTTTCATTTTAACC
1 TTAAAAAGAATCATAAGACACAAGAACTTTGCT-ATGCATCACATTGTAAATTTCCATTTGAACC
* * * * * * **
56408570 TTTTAAAAATTTATAGTCTATATTTGATTATGTAATCGACTTAGT-CTCGAAATTTGAATTTTAA
65 TTTTAAAAACTTATACTTTATCTTTGATTCTGTAACCGACTT-GTCCTCGAAATTCAAATTTTAA
* *
56408634 TATTTAAAAATGAAATTAAAAAAAATCATTACATGAGAAGTTTGCTATGCATCACATCGTAAATT
129 TATTTAAAAATGAAATT-AAAAAAATCATAACATGAGAACTTTGCTATGCATCACATCGTAAATT
* * * *
56408699 TTCATTTTAACCTCTTAAAAATTTATATTTTATCTATAATTCTGTAGTGGACTTTGTCTCAAAAT
193 TCCATTTTAACCTCTTAAAAATTTATATTTTATCTTTAATTCTGTAATGGACTTTGCCTCAAAAT
* *
56408764 TTGAGTTTCAATATTTAAAAATGAAG
258 TCGAGTTTCAATATTTAAAAATGAAA
** *
56408790 TTAAAAAGAATCATAAGACATGAGCACTTTGCTATGCATCACATTGTAAATTTCCATTTGAACCT
1 TTAAAAAGAATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTGAACCT
* * * *
56408855 TTTAAAAACTTATACTTTA-CTTTTGATTCTGTAACCAACTTCTCCTCGAAATTTAAATTTAAAT
66 TTTAAAAACTTATACTTTATC-TTTGATTCTGTAACCGACTTGTCCTCGAAATTCAAATTTTAAT
* ** *
56408919 TTTTAAAAAT-AAACTTCCAAAAATCATAAAATACGAGAGA-TTTGCTATGCATCACAT
130 ATTTAAAAATGAAA-TTAAAAAAATCATAACAT--GAGA-ACTTTGCTATGCATCACAT
56408976 GAATTTGTTA
Statistics
Matches: 615, Mismatches: 119, Indels: 40
0.79 0.15 0.05
Matches are distributed among these distances:
283 97 0.16
284 269 0.44
285 193 0.31
286 55 0.09
287 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (283 bp):
TTAAAAAGAATCATAAGACACAAGAACTTTGCTATGCATCACATTGTAAATTTCCATTTGAACCT
TTTAAAAACTTATACTTTATCTTTGATTCTGTAACCGACTTGTCCTCGAAATTCAAATTTTAATA
TTTAAAAATGAAATTAAAAAAATCATAACATGAGAACTTTGCTATGCATCACATCGTAAATTTCC
ATTTTAACCTCTTAAAAATTTATATTTTATCTTTAATTCTGTAATGGACTTTGCCTCAAAATTCG
AGTTTCAATATTTAAAAATGAAA
Found at i:56409982 original size:143 final size:141
Alignment explanation
Indices: 56409721--56410447 Score: 735
Period size: 143 Copynumber: 5.1 Consensus size: 141
56409711 CAAAATACAC
* ** * *
56409721 GAGAACTTCACTAAGCATCACATGGTAAATTTTTATTTTAA-CTTCTTAAAAGTTTATACTATAT
1 GAGAACTTCACTATGCATCACATGGTAAATTTCCATTTTAACCTT-TTAAAAATTTATACTTTAT
* * * *
56409785 CTTTGATTTTGTAATTGACTTCACCTCAAAATTCAAGTTTTAATATTTACAAATGAAATAAAAAA
65 CTTTGATTCTGTAA-CGACTTCGCCTCAAAATTCAAGTTTCAATATTTA-AAATGAAATAAAAAA
* *
56409850 TAATAATAAGACAT
128 GAATCATAAGACAT
* ** * * *
56409864 AAGAACTTCACTATAAATAACATGGTAAATTTCCATTTAAATCTTTTAAAAATTTATACTTTATC
1 GAGAACTTCACTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAATTTATACTTTATC
** * ** * *
56409929 TTTGATTCCATAACAGACTTTGCCTCAAAATTTGAGTGTCAATATTTGAAAATGAAATTAAAAAG
66 TTTGATTCTGTAAC-GACTTCGCCTCAAAATTCAAGTTTCAATATTT-AAAATGAAATAAAAAAG
*
56409994 AACCATAAGACAT
129 AATCATAAGACAT
* * * * *
56410007 GAGAACTTCGCCATGCATCACATAGTAAATTTCCATTTTAACCTCTTT-AAAATTTAGACATTAT
1 GAGAACTTCACTATGCATCACATGGTAAATTTCCATTTTAACCT-TTTAAAAATTTATACTTTAT
* * * * *
56410071 CTTTTATTCTGTAACGAACTTCGCCTTAAAATTCAACTATCAATATTTAAAAATGATATTGAAAA
65 CTTTGATTCTGTAACG-ACTTCGCCTCAAAATTCAAGTTTCAATATTT-AAAATGA-AAT--AAA
* *
56410136 AAAAAATCATAATACAT
125 AAAGAATCATAAGACAT
* * * *
56410153 AAGAACTTCACTATGCATTACATGGTAAATTTCCATTTTAACCTCTTAAAAATATATACTTTATC
1 GAGAACTTCACTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAATTTATACTTTATC
* * * * *
56410218 TTTGATT-TCGTAACGAACTTTGCCTCGAAATTCAAGTTTCAATATTTAATACTTAAATTAAAAA
66 TTTGATTCT-GTAACG-ACTTCGCCTCAAAATTCAAGTTTCAATATTTAA-AATGAAATAAAAAA
56410282 GAATCATAAGACAT
128 GAATCATAAGACAT
** ** * * *
56410296 GAGAACTTTGCTATGCATCACATGGTAAATTTCCATTAGAACCTCTCAAAATTTTATACTTTATC
1 GAGAACTTCACTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAATTTATACTTTATC
* * *
56410361 -TTGACTCTGTAACTGACTTCGCCACAAAATTCGAGTTTCAATATTTAAAAATGAAAAGTAAAAA
66 TTTGATTCTGTAAC-GACTTCGCCTCAAAATTCAAGTTTCAATATTT-AAAATG-AAA-TAAAAA
* *
56410425 A-TATTATAAGACAT
127 AGAATCATAAGACAT
56410439 GAGAACTTC
1 GAGAACTTC
56410448 TGTAACACCC
Statistics
Matches: 477, Mismatches: 91, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
142 40 0.08
143 304 0.64
144 15 0.03
145 7 0.01
146 111 0.23
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (141 bp):
GAGAACTTCACTATGCATCACATGGTAAATTTCCATTTTAACCTTTTAAAAATTTATACTTTATC
TTTGATTCTGTAACGACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAATGAAATAAAAAAGAA
TCATAAGACAT
Found at i:56410240 original size:289 final size:284
Alignment explanation
Indices: 56409721--56410447 Score: 861
Period size: 289 Copynumber: 2.5 Consensus size: 284
56409711 CAAAATACAC
* * ** *
56409721 GAGAACTTCACTAAGCATCACATGGTAAATTTTTATTTTAACTTCTTAAAAGTTTATACTATATC
1 GAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACT-TATC
* * * * * *
56409786 TTTGATTTTGTAATTGACTTCACCTCAAAATTCAAGTTTTAATATTTACAAATGAAATAAAAAAT
65 TTTGATTCTGTAA-CGACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAAATGAAATAAAAAAA
* *
56409851 AATAATAAGACATAAGAACTTCACTATAAATAACATGGTAAATTTCCATTTAAATCTTTTAAAAA
129 AATAATAAGACATAAGAACTTCACTATAAATAACATGGTAAATTTCCATTTAAACCTCTTAAAAA
* **
56409916 TTTATACTTTATCTTTGATTCCATAACAGACTTTGCCTCAAAATTTGAGTGTCAATATTTGAA-A
194 TATATACTTTATCTTTGATTCCATAACAGACTTTGCCTCAAAATTCAAGTGTCAATATTT-AATA
56409980 ATGAAATTAAAAAGAACCATAAGACAT
258 ATGAAATTAAAAAGAACCATAAGACAT
* * *
56410007 GAGAACTTCGCCATGCATCACATAGTAAATTTCCATTTTAACCTCTTTAAAA-TTTAGACATTAT
1 GAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTC-TTAAAAGTTTATAC-TTAT
* * * * *
56410071 CTTTTATTCTGTAACGAACTTCGCCTTAAAATTCAACTATCAATATTTAAAAATGATATTGAAAA
64 CTTTGATTCTGTAACG-ACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAAATGA-AAT--AAA
* * ** * *
56410136 AAAAAATCATAATACATAAGAACTTCACTATGCATTACATGGTAAATTTCCATTTTAACCTCTTA
125 AAAAAATAATAAGACATAAGAACTTCACTATAAATAACATGGTAAATTTCCATTTAAACCTCTTA
* * * *
56410201 AAAATATATACTTTATCTTTGATTTCGTAAC-GAACTTTGCCTCGAAATTCAAGTTTCAATATTT
190 AAAATATATACTTTATCTTTGATTCCATAACAG-ACTTTGCCTCAAAATTCAAGTGTCAATATTT
* * *
56410265 AATACTTAAATTAAAAAGAATCATAAGACAT
254 AATAATGAAATTAAAAAGAACCATAAGACAT
* ** * *
56410296 GAGAACTTTGCTATGCATCACATGGTAAATTTCCATTAGAACCTCTCAAAATTTTATACTTTATC
1 GAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATAC-TTATC
* * *
56410361 -TTGACTCTGTAACTGACTTCGCCACAAAATTCGAGTTTCAATATTTAAAAATGAAA-AGTAAAA
65 TTTGATTCTGTAAC-GACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAAATGAAATA--AAAA
* * *
56410424 AATATTATAAGACATGAGAACTTC
127 AAAATAATAAGACATAAGAACTTC
56410448 TGTAACACCC
Statistics
Matches: 372, Mismatches: 57, Indels: 24
0.82 0.13 0.05
Matches are distributed among these distances:
284 1 0.00
285 1 0.00
286 116 0.31
287 10 0.03
288 53 0.14
289 191 0.51
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (284 bp):
GAGAACTTCGCTATGCATCACATGGTAAATTTCCATTTTAACCTCTTAAAAGTTTATACTTATCT
TTGATTCTGTAACGACTTCGCCTCAAAATTCAAGTTTCAATATTTAAAAATGAAATAAAAAAAAA
TAATAAGACATAAGAACTTCACTATAAATAACATGGTAAATTTCCATTTAAACCTCTTAAAAATA
TATACTTTATCTTTGATTCCATAACAGACTTTGCCTCAAAATTCAAGTGTCAATATTTAATAATG
AAATTAAAAAGAACCATAAGACAT
Found at i:56410846 original size:30 final size:32
Alignment explanation
Indices: 56410791--56410850 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
56410781 ACGGCCAGAT
*
56410791 CACACGCCCGTGTGTCTAGCCCGTGTGCTATG
1 CACACGCCCGTGTGCCTAGCCCGTGTGCTATG
*
56410823 CACACGCCCGTGT-CCTAG-TCGTGTGCTA
1 CACACGCCCGTGTGCCTAGCCCGTGTGCTA
56410851 GGCCGTGCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 4 0.15
32 13 0.50
ACGTcount: A:0.13, C:0.35, G:0.27, T:0.25
Consensus pattern (32 bp):
CACACGCCCGTGTGCCTAGCCCGTGTGCTATG
Found at i:56412041 original size:2 final size:2
Alignment explanation
Indices: 56412034--56412058 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
56412024 CCAGCTCAAT
56412034 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
56412059 CTATTGATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:56413146 original size:31 final size:31
Alignment explanation
Indices: 56413111--56413180 Score: 86
Period size: 31 Copynumber: 2.3 Consensus size: 31
56413101 CTTGTCACTT
* * *
56413111 GTAGCCGAAGCTATCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
* * *
56413142 GTAGCCGGAGCTACCATTTTTCACTAATCAA
1 GTAGCCGAAGCTACCACTATTCACTAATCAA
56413173 GTAGCCGA
1 GTAGCCGA
56413181 TGATCAGGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTATTCACTAATCAA
Found at i:56413202 original size:46 final size:46
Alignment explanation
Indices: 56413135--56413226 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
56413125 CACTATTCAC
* *
56413135 TGATCAGGTAGCCGGAGCTACCATTTTTCACTAATCAAGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
* * * *
56413181 TGATCAGGTAGTCGAAGCTACCACTTTTCATTGATCAGGTAGCCGA
1 TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
56413227 AGCTACCACT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (46 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCACTAATCAAGTAGCCGA
Found at i:56413219 original size:31 final size:31
Alignment explanation
Indices: 56413181--56413239 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
56413171 AAGTAGCCGA
*
56413181 TGATCAGGTAGTCGAAGCTACCACTTTTCAT
1 TGATCAGGTAGCCGAAGCTACCACTTTTCAT
56413212 TGATCAGGTAGCCGAAGCTACCACTTTT
1 TGATCAGGTAGCCGAAGCTACCACTTTT
56413240 ACTTGCCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (31 bp):
TGATCAGGTAGCCGAAGCTACCACTTTTCAT
Found at i:56413300 original size:50 final size:50
Alignment explanation
Indices: 56413219--56413394 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
56413209 CATTGATCAG
* * *
56413219 GTAGCCGAAGCTACCACTT-TTACTTGCCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
*
56413269 GTAGCTGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
56413319 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
56413369 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
56413395 GTTGCCATGG
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
50 113 0.96
51 5 0.04
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:56415616 original size:9 final size:8
Alignment explanation
Indices: 56415585--56415618 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
56415575 AGTCCCTAAT
56415585 TCACAAAA
1 TCACAAAA
56415593 TCACAAAA
1 TCACAAAA
56415601 TCACAAAA
1 TCACAAAA
56415609 TACACAAAA
1 T-CACAAAA
56415618 T
1 T
56415619 TTACTTGTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.62, C:0.24, G:0.00, T:0.15
Consensus pattern (8 bp):
TCACAAAA
Found at i:56421410 original size:59 final size:60
Alignment explanation
Indices: 56421314--56421446 Score: 205
Period size: 59 Copynumber: 2.2 Consensus size: 60
56421304 GACAAGATTG
* * *
56421314 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
* * *
56421374 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATA
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
56421433 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
56421447 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
59 52 0.78
60 15 0.22
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (60 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATA
Found at i:56421459 original size:29 final size:29
Alignment explanation
Indices: 56421344--56421446 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
56421334 AAAATTGTAC
*
56421344 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
56421373 AGCACTAAGTGTGCGAGCTGAAAATTATAT
1 AGCACTAAGTGTGCGAGCTGAAAA-TATAT
56421403 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
56421432 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
56421447 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:56428939 original size:29 final size:29
Alignment explanation
Indices: 56428865--56428939 Score: 141
Period size: 29 Copynumber: 2.6 Consensus size: 29
56428855 AAAATTGTAC
*
56428865 AGCACTAAGTGTGCGAACTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
56428894 AGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAGCTGAAAATATAT
56428923 AGCACTAAGTGTGCGAG
1 AGCACTAAGTGTGCGAG
56428940 AAAATATCAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 45 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (29 bp):
AGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:56431219 original size:31 final size:29
Alignment explanation
Indices: 56431168--56431229 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 29
56431158 TTTGAAAAAA
56431168 CAGAAATTAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAGACTCAACTCAACTCTCG
* *
56431197 CAGAAATTAAAAAGGCTCAACTCACCTCTCG
1 CAGAAATT--AAAGACTCAACTCAACTCTCG
56431228 CA
1 CA
56431230 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 8 0.28
31 21 0.72
ACGTcount: A:0.40, C:0.29, G:0.11, T:0.19
Consensus pattern (29 bp):
CAGAAATTAAAGACTCAACTCAACTCTCG
Found at i:56431346 original size:14 final size:14
Alignment explanation
Indices: 56431323--56431357 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
56431313 TGAGTTGATT
56431323 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
56431336 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
56431350 TTTGAAAA
1 TTTGAAAA
56431358 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:56431620 original size:72 final size:74
Alignment explanation
Indices: 56431336--56431706 Score: 344
Period size: 73 Copynumber: 5.0 Consensus size: 74
56431326 GAAAACAGAA
** * * * * *
56431336 TTTGAAAAACAGATTTTGAAAATACCTCGACATGTAACCGAGGCTCAACTCACATCTCGCAATGT
1 TTTGAAAAACAGAAATTGAAAATACCTCAACGTGT-CCCGAGGCTCAACTCACCTCTCGCAATAT
56431401 GAGTTGATTTT
65 GAGTTGA-TTT
* * ** * * *
56431412 TTTGAAAAATATAAATTGAAAAATACCTCAGTGTGTGATCTGAAGCTC-ACTCACCTCTCGCAAT
1 TTTGAAAAACAGAAATTG-AAAATACCTCAACGTGT--CCCGAGGCTCAACTCACCTCTCGCAAT
56431476 ATGAGTTGATTTT
63 ATGAGTTGA-TTT
* * * * * ** * * *
56431489 TTTG-AAGATAGAAATTG-AAATAGCTC-GCATGAGCCAAGGGTC-ACTCACCTCTCGCAATATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
56431550 AGTTGATTT
66 AGTTGATTT
** ** *
56431559 TTTG-AAAA-AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
56431622 AGTTGA-AT
66 AGTTGATTT
* *
56431630 TTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 TTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
56431695 AGTTGATTT
66 AGTTGATTT
56431704 TTT
1 TTT
56431707 TTTTTTTTTT
Statistics
Matches: 239, Mismatches: 48, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
69 8 0.03
70 18 0.08
71 42 0.18
72 25 0.10
73 57 0.24
74 12 0.05
76 25 0.10
77 44 0.18
78 8 0.03
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (74 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTT
Found at i:56431794 original size:317 final size:312
Alignment explanation
Indices: 56431413--56432027 Score: 737
Period size: 317 Copynumber: 1.9 Consensus size: 312
56431403 GTTGATTTTT
* *
56431413 TTGAAAAATATAAATTGAAAAATACCTCAGTGTGTGATCTGAAGCTCACTCACCTCTCGCAATAT
1 TTGAAAAATAGAAATTGAAAAATACCTCAGCGTGTGATCTGAAGCTCACTCACCTCTCGCAATAT
* * *
56431478 GAGTTGATTTTTTTGA-AGAT-AGAAATTGAAA-TAGCTC-GCATGAGCCAAGGGTC-ACTCACC
66 GAGTTGA-TTTTTTGACA-ATAAAAAATTGAAATTACCTCAGCATG-GCCAAGGCTCAACTCACC
* **
56431538 TCTCGCAATATAAGTTGATTTTTTG-AAAAA-GAAATTGAAAATACCTCAACGTGTCTTGAGGCT
128 TCTCGCAATATAAGTTGATTTTTTGAAAAAACGAAATTGAAAATACCTC-ACGTGAC-CAAGGCT
***
56431601 CAACTCATTTCTCACAATATGAGTTG-AATTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
191 CAACTC-CCACTCACAATATGAGTTGTAATTTTG--AAACAGAAATTGAAA-TACCTCAGCGTGT
56431665 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTTTTTTGAAATGCAGAAA
252 ---GAGGCTCAACTCA-CTCTCGCAATATGAGTTGATTTTTTTTTTTTTTTTTGAAATGCAGAAA
* *
56431730 TTGAAAAATGGAAATTG-AAAATACCTC-GACGTGTGATCTGAGGCTCAACTCACCTCTCGCAAT
1 TTGAAAAATAGAAATTGAAAAATACCTCAG-CGTGTGATCTGAAGCTC-ACTCACCTCTCGCAAT
* * **
56431793 ATGAGTTGATTTTTTGACAATAAAAAAATTGAAATTACCTCAGCGTGTCTGAGGCTCAACTCACC
64 ATGAGTTGATTTTTTGACAAT-AAAAAATTGAAATTACCTCAGCATGGCCAAGGCTCAACTCACC
* *
56431858 TCTCGCAATATGAGTTGATTTTTTGAAAAAAAATTAAAAACGAAATTGAAAATACCTCGCGTGAC
128 TCTCGCAATATAAGTTGATTTTTTG-------A--AAAAACGAAATTGAAAATACCTCACGTGAC
* **
56431923 CAAGGCTCAACTCCCACTCGCAATATGAGTTGTTTTTTTGAAACAGAAATTGAAATACCTCAGCG
184 CAAGGCTCAACTCCCACTCACAATATGAGTTGTAATTTTGAAACAGAAATTGAAATACCTCAGCG
56431988 TGTGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTT
249 TGTGAGGCTCAACTCACTCTCGCAATATGAGTTGATTTTT
56432028 GAAAAAGTAG
Statistics
Matches: 256, Mismatches: 22, Indels: 35
0.82 0.07 0.11
Matches are distributed among these distances:
315 1 0.00
316 35 0.14
317 41 0.16
318 10 0.04
319 11 0.04
320 35 0.14
322 24 0.09
323 13 0.05
326 13 0.05
327 15 0.06
328 15 0.06
329 16 0.06
330 10 0.04
331 17 0.07
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (312 bp):
TTGAAAAATAGAAATTGAAAAATACCTCAGCGTGTGATCTGAAGCTCACTCACCTCTCGCAATAT
GAGTTGATTTTTTGACAATAAAAAATTGAAATTACCTCAGCATGGCCAAGGCTCAACTCACCTCT
CGCAATATAAGTTGATTTTTTGAAAAAACGAAATTGAAAATACCTCACGTGACCAAGGCTCAACT
CCCACTCACAATATGAGTTGTAATTTTGAAACAGAAATTGAAATACCTCAGCGTGTGAGGCTCAA
CTCACTCTCGCAATATGAGTTGATTTTTTTTTTTTTTTTTGAAATGCAGAAA
Found at i:56431865 original size:74 final size:73
Alignment explanation
Indices: 56431741--56432031 Score: 321
Period size: 74 Copynumber: 3.9 Consensus size: 73
56431731 TGAAAAATGG
*
56431741 AAATTGAAAATACCTCGACGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTC-A-GCGTG-TCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
56431806 TTGACAATAAAA
63 TTGA-AATAAAA
*
56431818 AAATTGAAATTACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 AAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
56431883 AAAAAAAATTAAAAA
66 -----AAA-T-AAAA
* ** * *
56431898 CGAAATTGAAAATACCTC-GCGTGACCAAGGCTCAACTC-CCACTCGCAATATGAGTTGTTTTTT
1 --AAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
56431961 TG-AA-ACAG
64 TGAAATAAAA
56431969 AAATTG-AAATACCTCAGCGTG--TGAGGCTCAACTCA-CTCTCGCAATATGAGTTGA-TTTTTG
1 AAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
56432029 AAA
66 AAA
56432032 AAGTAGAAAT
Statistics
Matches: 188, Mismatches: 14, Indels: 34
0.80 0.06 0.14
Matches are distributed among these distances:
66 6 0.03
67 30 0.16
68 9 0.05
69 11 0.06
71 2 0.01
74 45 0.24
75 4 0.02
76 1 0.01
77 15 0.08
78 2 0.01
79 2 0.01
80 29 0.15
81 17 0.09
82 15 0.08
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (73 bp):
AAATTGAAAATACCTCAGCGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
AAATAAAA
Found at i:56432210 original size:68 final size:72
Alignment explanation
Indices: 56432050--56432248 Score: 257
Period size: 68 Copynumber: 2.7 Consensus size: 72
56432040 ATTAAAAGGT
*
56432050 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAATG-AAAACAGAAATTGAAAATACCTC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT------TTGAAAAACA-AAATTGAAAATACCTC
* *
56432114 AGCGTGATCTGAGGC
59 AGCATGA-CCGAGGC
56432129 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTT-AAAAA-AAAATTGAAAATACCTCAGCATG-
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAATTGAAAATACCTCAGCATGA
56432190 CCGAGGC
66 CCGAGGC
56432197 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAATT-AAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAATTGAAAAT
56432249 TAACTCACTC
Statistics
Matches: 113, Mismatches: 3, Indels: 17
0.85 0.02 0.13
Matches are distributed among these distances:
68 34 0.30
69 5 0.04
70 31 0.27
71 7 0.06
72 5 0.04
78 3 0.03
79 28 0.25
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.28
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAATTGAAAATACCTCAGCATGA
CCGAGGC
Found at i:56432282 original size:120 final size:118
Alignment explanation
Indices: 56432131--56432367 Score: 413
Period size: 120 Copynumber: 2.0 Consensus size: 118
56432121 TCTGAGGCTC
*
56432131 AACTCACCTCTCGCAATATGAGTTGATTTTTAAAA-AAAAATTGAAAATACCTCAGCATGCCGAG
1 AACTCACCTCTCGCAATATGAGTTGAATTTTAAAACAAAAATT-AAAATACCTCAGCATGCCGAG
56432195 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAATTAAAATT
65 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAACAAAATTAAAATT
* *
56432250 AACTCACTCTCTCGCAATATGAGTTGAATTTTAAAACAGAAATTAAAATACCTCAGCGTGCCGAG
1 AACTCAC-CTCTCGCAATATGAGTTGAATTTTAAAACAAAAATTAAAATACCTCAGCATGCCGAG
56432315 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTAAAAT
65 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTAAAAT
56432368 ACCTCACGTG
Statistics
Matches: 113, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
119 23 0.20
120 84 0.74
121 6 0.05
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (118 bp):
AACTCACCTCTCGCAATATGAGTTGAATTTTAAAACAAAAATTAAAATACCTCAGCATGCCGAGG
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACAAAATTAAAATT
Found at i:56432298 original size:50 final size:50
Alignment explanation
Indices: 56432199--56432298 Score: 150
Period size: 52 Copynumber: 2.0 Consensus size: 50
56432189 GCCGAGGCTC
*
56432199 AACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAATTAAAATT
1 AACTCACCTCTCGCAATATGAGTTGATATTTT-AAAAACAAAATTAAAATT
56432250 AACTCACTCTCTCGCAATATGAGTTGA-ATTTT-AAAACAGAAATTAAAAT
1 AACTCAC-CTCTCGCAATATGAGTTGATATTTTAAAAACA-AAATTAAAAT
56432299 ACCTCAGCGT
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
49 6 0.13
50 10 0.22
51 11 0.24
52 19 0.41
ACGTcount: A:0.42, C:0.16, G:0.10, T:0.32
Consensus pattern (50 bp):
AACTCACCTCTCGCAATATGAGTTGATATTTTAAAAACAAAATTAAAATT
Found at i:56432393 original size:70 final size:68
Alignment explanation
Indices: 56432250--56432503 Score: 379
Period size: 69 Copynumber: 3.7 Consensus size: 68
56432240 AATTAAAATT
*
56432250 AACTCACTCTCTCGCAATATGAGTTGAATTTTAAAACAGAAATTAAAATACCTCAGCGTG-CCGA
1 AACTCAC-CTCTCGCAATATGAGTTG-ATTTTAAAACAGAAATTAAAATACCTCAGCGTGTCTGA
56432314 GGCTC
64 GGCTC
56432319 AACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAACA-AAATTAAAATACCTCA-CGTGTCTT
1 AACTCACCTCTCGCAATATGAGTTGA--TTTT-AAAACAGAAATTAAAATACCTCAGCGTGTC-T
56432382 GAGGCTC
62 GAGGCTC
*
56432389 AACTCACCTCTCGCAATATGAGTTGATTTTAAAACAGAAATTGAAATACCTCAGCGTGTCCTGAG
1 AACTCACCTCTCGCAATATGAGTTGATTTTAAAACAGAAATTAAAATACCTCAGCGTGT-CTGAG
56432454 GCTC
65 GCTC
* *
56432458 AACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAAAATTAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTT-AAAACAGAAATTAAA
56432504 GGCTTAACTC
Statistics
Matches: 171, Mismatches: 5, Indels: 17
0.89 0.03 0.09
Matches are distributed among these distances:
67 7 0.04
68 41 0.24
69 71 0.42
70 52 0.30
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.28
Consensus pattern (68 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTAAAACAGAAATTAAAATACCTCAGCGTGTCTGAGG
CTC
Found at i:56432588 original size:113 final size:117
Alignment explanation
Indices: 56432383--56432606 Score: 375
Period size: 113 Copynumber: 1.9 Consensus size: 117
56432373 ACGTGTCTTG
56432383 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAGAAATTGAAATACCTCAGCGTGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAAC--AAA-T-AAATACCTCAGCGTGT
56432448 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAAAAAAATTAA
62 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAATTAA
*
56432503 AGGCTTAACTCACCTCTCGCAATATGAGTTGA-TTTAAAAC-AA-AAATACCTCAGCGTGTCCTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAATAAATACCTCAGCGTGTCCTG
56432565 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
66 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAA
56432607 TTAAATTGAA
Statistics
Matches: 102, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
113 52 0.51
114 9 0.09
116 2 0.02
119 8 0.08
120 31 0.30
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (117 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAAACAAATAAATACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAAAATTAA
Found at i:56432770 original size:72 final size:72
Alignment explanation
Indices: 56432609--56432751 Score: 236
Period size: 71 Copynumber: 2.0 Consensus size: 72
56432599 TTTGAAAATT
* * * *
56432609 AAATTGAAA-ACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
56432673 TGAGTTG
66 TGAGTTG
56432680 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
56432744 TGAGTTG
66 TGAGTTG
56432751 A
1 A
56432752 TTTTTTGAAA
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
71 42 0.63
72 25 0.37
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.22
Consensus pattern (72 bp):
AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
TGAGTTG
Found at i:56432871 original size:119 final size:121
Alignment explanation
Indices: 56432649--56432872 Score: 330
Period size: 119 Copynumber: 1.8 Consensus size: 121
56432639 GCGTGACCTG
56432649 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTT--AATTAAAACACAAAAATTGAAAATACCTCAGCG
56432714 TGCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAACAAAAAATTAAA
64 T--CCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAACAAAAAATTAAA
* * *
56432774 AGGCTTCAACTCACCTCTCGCAATATGAGTT-TTTGAAAA-ATAGAAATT-AAAATACCTCAGCG
1 AGGC-TCAACTCACCTCTCGCAATATGAGTTAATT-AAAACACAAAAATTGAAAATACCTCAGCG
*
56432836 T-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
64 TCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATT
56432873 CTTGAACAAC
Statistics
Matches: 93, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
119 35 0.38
122 15 0.16
123 9 0.10
124 4 0.04
125 4 0.04
126 26 0.28
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.26
Consensus pattern (121 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTAATTAAAACACAAAAATTGAAAATACCTCAGCGTC
CGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAACAAAAAATTAAA
Found at i:56432932 original size:276 final size:271
Alignment explanation
Indices: 56432050--56433477 Score: 1752
Period size: 257 Copynumber: 5.4 Consensus size: 271
56432040 ATTAAAAGGT
56432050 TCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAA--AAA-TGAAAACAGAAATTGAAAATAC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACTAAATTGAAAACA-AAATTGAAAATAC
* * *
56432111 CTCAGCGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAA-A-AAAAATTG
65 CTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTAAAACACAAAAATTG
* *
56432174 AAAATACCTCAGCATG--CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAA
129 AAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA--TTTTGAAAAA
* * *
56432237 C-AAAATTAAAA---TTAACTCACTCTCTCGCAATATGAGTTGAATTTTAAAACAGAAATTAAAA
192 CAAAAATTAAAAGGCTTAACTCAC-CTCTCGCAATATGAG-T-AATTTAAAAATA-AAATAAAAA
56432298 TACCTCAGC-GTGCCGAGGC
253 TACCTCAGCGGT-CCGAGGC
56432317 TCAACTCACCTCTCGCAATATGAGTTGA-TTT------T---TTGAAAACAAAATT-AAAATACC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACTAAATTGAAAACAAAATTGAAAATACC
* * * * *
56432371 TCA-CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAAA-ACAGAAATTG-A
66 TCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAACACAAAAATTGAA
* * *
56432433 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAA-AAA
131 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAA
* *
56432497 AATT-AAAGGCTTAACTCACCTCTCGCAATATGAGTTGA-TT-----TAAAACAAAAATACCTCA
196 AATTAAAAGGCTTAACTCACCTCTCGCAATATGAG-TAATTTAAAAATAAAATAAAAATACCTCA
56432555 GCGTGTCCTGAGGC
260 GCG-GTCC-GAGGC
*
56432569 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAATTAAATTGAAAACAGAAATTGAAAATA
1 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAACTAAATTGAAAACA-AAATTGAAAATA
56432634 CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATT
64 CCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-AATTAAAACACAAAAATT
*
56432699 GAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTGAAAC
128 GAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGA--TTTTGAAAA
* *
56432763 A-AAAAATTAAAAGGCTTCAACTCACCTCTCGCAATATGAGT-TTTTGAAAAATAGAAATTAAAA
191 ACAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGTAATTT-AAAAATA-AAATAAAAA
56432826 TACCTCAGC-GT-CGAGGC
253 TACCTCAGCGGTCCGAGGC
56432843 TCAACTCACCTCTCGCAATATGAGTTGATTCTTGAACAACGTAAATTGAAAACAGAAATTGAAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGAA-AAC-TAAATTGAAAACA-AAATTGAAAA
56432908 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAA
62 TACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-AATTAAAACACAAAAA
56432973 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAA
126 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
*
56433037 ACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAAT
191 ACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGT-AATTTAAAA-ATAAAATAAAAAT
*
56433102 ACCTCAGCGTGCCCCGAGGC
254 ACCTCAGCG-G-TCCGAGGC
* *
56433122 TCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAC----------A-AAAATTAAAAATACC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACTAAATTGAAAACAAAATTGAAAATACC
* * * *
56433176 TCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTG-ATTAAAACACAAAAATTGAA
66 TCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAACACAAAAATTGAA
56433240 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAA
131 AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAA
*
56433305 AATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT----A-AAACTAAAAATACCTCA
196 AATTAAAAGGCTTAACTCACCTCTCGCAATATGAGT-AATTTAAAAATAAAATAAAAATACCTCA
56433365 GCGTGTCCCGAGGC
260 GCG-GT-CCGAGGC
* *
56433379 TCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAAC---------AAC--AATTAAAAATACC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACTAAATTGAAAACAAAATTGAAAATACC
* * * *
56433433 TCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGA
66 TCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
56433478 TTTTCCTTGA
Statistics
Matches: 1069, Mismatches: 34, Indels: 125
0.87 0.03 0.10
Matches are distributed among these distances:
250 16 0.01
251 3 0.00
252 35 0.03
254 3 0.00
256 5 0.00
257 163 0.15
258 64 0.06
259 54 0.05
260 6 0.01
261 8 0.01
262 76 0.07
263 59 0.06
264 58 0.05
265 12 0.01
266 42 0.04
267 34 0.03
268 43 0.04
269 15 0.01
270 16 0.01
271 11 0.01
272 22 0.02
273 2 0.00
274 64 0.06
275 44 0.04
276 116 0.11
277 42 0.04
278 21 0.02
279 35 0.03
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (271 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACTAAATTGAAAACAAAATTGAAAATACC
TCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTAAAACACAAAAATTGAA
AATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAA
AATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTAATTTAAAAATAAAATAAAAATACCTCAG
CGGTCCGAGGC
Found at i:56433019 original size:72 final size:71
Alignment explanation
Indices: 56432885--56433049 Score: 251
Period size: 72 Copynumber: 2.3 Consensus size: 71
56432875 TGAACAACGT
* * *
56432885 AAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
56432950 GAGTTG
66 GAGTTG
* *
56432956 AAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTGAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATA
56433021 TGAGTTG
65 TGAGTTG
**
56433028 ATTTTGAAAACAAAAATT-AAAA
1 AAATTGAAAACAAAAATTGAAAA
56433050 GGCTTAACTC
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
70 4 0.05
71 17 0.20
72 64 0.75
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (71 bp):
AAATTGAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATAT
GAGTTG
Found at i:56433142 original size:121 final size:121
Alignment explanation
Indices: 56432925--56433427 Score: 525
Period size: 121 Copynumber: 4.0 Consensus size: 121
56432915 GCGTGACCTG
* * * *
56432925 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACAAAAACTAAAAATACCTCAGCG
56432990 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
63 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
* *
56433049 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
* *
56433114 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATT-AAA
** * * * * * *
56433171 ATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAAT-ATGAGTTGATTAAAACACAAAAA
1 A-GGCTCAAC---TC---A-CCTC-TCGCA-ATAT-G-AGTCA--A--T--TTAAA--ACAAAAA
* *
56433235 TTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA
46 CTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAA
56433300 ACAAAAATTAAA
110 ACAAAAATTAAA
* *
56433312 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT------AAAACTAAAAATACCTCAGCGTGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
* * *
56433371 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAACAATTAAA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
56433427 A
1 A
56433428 ATACCTCAAC
Statistics
Matches: 319, Mismatches: 37, Indels: 55
0.78 0.09 0.13
Matches are distributed among these distances:
115 15 0.05
116 60 0.19
121 75 0.24
122 11 0.03
123 6 0.02
124 29 0.09
126 3 0.01
128 1 0.00
129 3 0.01
130 5 0.02
131 5 0.02
132 5 0.02
133 5 0.02
134 3 0.01
135 1 0.00
137 3 0.01
139 5 0.02
140 5 0.02
141 67 0.21
142 12 0.04
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (121 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACAAAAACTAAAAATACCTCAGCGTGC
CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:56433192 original size:71 final size:71
Alignment explanation
Indices: 56433049--56433312 Score: 356
Period size: 70 Copynumber: 3.7 Consensus size: 71
56433039 AAAAATTAAA
* * * * *
56433049 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTT-AAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
56433112 GCCCCG
66 GCCCCG
* *
56433118 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
* **
56433183 GTCTTG
66 GCCCCG
* * *
56433189 AGGCTCAACTCATCTCTCGCAATATGAGTTGA--TTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAA-ACAAAAATTAAAAATACCTCAGCG
56433252 TGCCCCG
65 TGCCCCG
*
56433259 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAAA
56433313 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 31 0.19
70 61 0.37
71 58 0.35
72 14 0.08
73 3 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAGCGT
GCCCCG
Found at i:56433270 original size:70 final size:69
Alignment explanation
Indices: 56433049--56433312 Score: 339
Period size: 71 Copynumber: 3.7 Consensus size: 69
56433039 AAAAATTAAA
* ** * * *
56433049 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
56433114 CCCG
66 CCCG
* * *
56433118 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTAAAAACAAAAATTAAAAATACCTCAGCGT
* **
56433183 GTCTTG
64 GCCCCG
* *
56433189 AGGCTCAACTCATCTCTCGCAATATGAGTTGATTAAAACACAAAAATTGAAAATACCTCAGCGTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG
56433254 CCCCG
65 CCCCG
*
56433259 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT-AAAAACAAAAATTAAAA
56433313 GGCTTAACTC
Statistics
Matches: 167, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
69 33 0.20
70 56 0.34
71 60 0.36
72 14 0.08
73 4 0.02
ACGTcount: A:0.38, C:0.23, G:0.14, T:0.25
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTAAAAACAAAAATTAAAAATACCTCAGCGTGC
CCCG
Found at i:56438518 original size:12 final size:12
Alignment explanation
Indices: 56438501--56438536 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
56438491 TGGGATATGC
56438501 AATGTATGAATG
1 AATGTATGAATG
56438513 AATGTATGAATG
1 AATGTATGAATG
*
56438525 AATGCATGAATG
1 AATGTATGAATG
56438537 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (12 bp):
AATGTATGAATG
Found at i:56441169 original size:8 final size:9
Alignment explanation
Indices: 56441151--56441189 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
56441141 TTGGGATAGG
56441151 TTTTTCTTT
1 TTTTTCTTT
56441160 TTTTTCTTTT
1 TTTTTC-TTT
56441170 TTTTTCTTT
1 TTTTTCTTT
*
56441179 GTTTT-TTT
1 TTTTTCTTT
56441187 TTT
1 TTT
56441190 GGGTTAGGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 5 0.19
9 13 0.48
10 9 0.33
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:56441170 original size:10 final size:10
Alignment explanation
Indices: 56441151--56441189 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
56441141 TTGGGATAGG
56441151 TTTTTC-TTT
1 TTTTTCTTTT
56441160 TTTTTCTTTT
1 TTTTTCTTTT
56441170 TTTTTCTTTGT
1 TTTTTCTTT-T
56441181 TTTTT-TTTT
1 TTTTTCTTTT
56441190 GGGTTAGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.25
10 15 0.54
11 6 0.21
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:56441173 original size:19 final size:19
Alignment explanation
Indices: 56441151--56441189 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
56441141 TTGGGATAGG
56441151 TTTTTCTTT-TTTTTCTTTT
1 TTTTTCTTTGTTTTT-TTTT
56441170 TTTTTCTTTGTTTTTTTTT
1 TTTTTCTTTGTTTTTTTTT
56441189 T
1 T
56441190 GGGTTAGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.00, C:0.08, G:0.03, T:0.90
Consensus pattern (19 bp):
TTTTTCTTTGTTTTTTTTT
Found at i:56444976 original size:43 final size:43
Alignment explanation
Indices: 56444915--56445027 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
56444905 TATATATTTT
* *
56444915 TAAAGGTCATGTTCTTTAGTGGAGTTTGTAGGAAAAGAGTCGC
1 TAAAGGTCATGTTCTTTAGCGGAGTTTGTAGGAAAAGAGCCGC
* * *
56444958 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGAGTTTGTAGGAAAAGAGCCGC
** * *
56445001 TAAAAATCATGTTCTATAGCGGCGTTT
1 TAAAGGTCATGTTCTTTAGCGGAGTTT
56445028 TTTTACATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGAGTTTGTAGGAAAAGAGCCGC
Found at i:56446235 original size:491 final size:491
Alignment explanation
Indices: 56445285--56446265 Score: 1393
Period size: 491 Copynumber: 2.0 Consensus size: 491
56445275 ATTGTGCTAT
* *
56445285 CTTGTAATTTCTTAAGGATTGATAATTAGAACTTAATTTAAAGGGGTTAAATAGTAATTATACAT
1 CTTGTAATTTCTTAAGAATTGATAATTAGAACTTAATTTAAAGGGGCTAAATAGTAATTATACAT
*
56445350 AGAATATATATCATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACATTATTAATTAAA
66 AGAATATATATCATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACATTAGTAATTAAA
* *
56445415 ATTATAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTCGCAAAAACAAA
131 ATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTCGAAAAAACAAA
* * * * *
56445480 AGCATTTTCATCTTTTCTTCAAGCAAATAGAACCAAGGGATAAAGAAGAGAGGAGCGTTCGGCTT
196 AACATTTCCATCTTTTCTTCAAGCAAACAGAACCAAGGGATAAAAAAGAAAGGAGCGTTCGGCTT
* * *
56445545 TAAGGGTGTAACGCCCCAAAAATTTTTGTTTTTGGAATTGTTAAAACATGTCAAGGGTGTAACGT
261 TAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACATGTCAAGGGTGTAACAT
* * * *
56445610 TCGACTTTGAAAATAGTTTTTTTATATGAGAAACTGCCACCTGATACGATGGTTTCACCCATTGT
326 TCGACTTCGAAAATAGTTTTTTTATATGAGAAACTGCCACATGATACGATGGTTACACCCACTGT
* * *
56445675 GTTGTCTTAATATAAAAATATTATTATTTTTATCATGAAATTATTGCGGAGGCAATTTTAACC-A
391 GTCGTCTTAATATAAAAATATTATTATTTTTATCATGAAATTATTGCAGAGGAAATTTTAACCAA
*
56445739 AAAAAACTGATATGACGGTTTCACTC-ATTGTGTCAC
456 AAAAAACTGATACGACGGTTTCAC-CAATTGTGTCAC
* * ** *
56445775 CTTGTAATTTGCTTAAGAATTTATAATTAGATCTTTCTTTAAAGGGGCTAAATAGTAATTATACC
1 CTTGTAATTT-CTTAAGAATTGATAATTAGAACTTAATTTAAAGGGGCTAAATAGTAATTATACA
* * * *
56445840 TAGAATATATATGGC-T-GGTTATTGAAGTAAGTATGTATGTTATATTATAAAACGTTAGTCATT
65 TAGAATATATAT--CATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACATTAGTAATT
* *
56445903 AAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATTATGGGAATAGGTGGAAAAAAC
128 AAAATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTCGAAAAAAC
* ** * * *
56445968 AAAAACATTTCCATCTTTTTTTCGTGCAAACCGAACTAAGGGA-AAAAATAGAAATGA-CGTTCG
193 AAAAACATTTCCATCTTTTCTTCAAGCAAACAGAACCAAGGGATAAAAA-AGAAAGGAGCGTTCG
56446031 GCTTTAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACATGTCAAGGGTGTA
257 GCTTTAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACATGTCAAGGGTGTA
* * ** * * *
56446096 ACATTTGGCTTCGAAAATA-TTTTTTTATATGAGAATTTTCCGCATGGTACGATGGTTACACCCA
322 ACATTCGACTTCGAAAATAGTTTTTTTATATGAGAAACTGCCACATGATACGATGGTTACACCCA
* * *
56446160 CTGTGTCGT-TCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAGATGAAATTTTA
387 CTGTGTCGTCT-TAATATAAAAATATTATTATTTTTATCATGAAATTATTGCAGAGGAAATTTTA
*
56446224 ACAATAAAAAAAACTGATACGACGGTTTCACCAATTGTGTCA
451 AC--CAAAAAAAACTGATACGACGGTTTCACCAATTGTGTCA
56446266 TTTTATTATA
Statistics
Matches: 433, Mismatches: 49, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
488 1 0.00
489 95 0.22
490 98 0.23
491 204 0.47
492 34 0.08
493 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (491 bp):
CTTGTAATTTCTTAAGAATTGATAATTAGAACTTAATTTAAAGGGGCTAAATAGTAATTATACAT
AGAATATATATCATCGGTTATTGAAGTAAGCATGCATGTTATATTATAAAACATTAGTAATTAAA
ATTAGAAAATGAAATTTTAATTAAATAGAACATAAGTGATAATGGGAATAGGTCGAAAAAACAAA
AACATTTCCATCTTTTCTTCAAGCAAACAGAACCAAGGGATAAAAAAGAAAGGAGCGTTCGGCTT
TAAGGGTGTAACACCCCAAAAATTTTTGTTCTTGGAATTGTTAAAACATGTCAAGGGTGTAACAT
TCGACTTCGAAAATAGTTTTTTTATATGAGAAACTGCCACATGATACGATGGTTACACCCACTGT
GTCGTCTTAATATAAAAATATTATTATTTTTATCATGAAATTATTGCAGAGGAAATTTTAACCAA
AAAAAACTGATACGACGGTTTCACCAATTGTGTCAC
Found at i:56446662 original size:2 final size:2
Alignment explanation
Indices: 56446655--56446698 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
56446645 TCGGCTTTGA
56446655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
56446697 AT
1 AT
56446699 GAGAACTTGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:56447226 original size:576 final size:573
Alignment explanation
Indices: 56446149--56447228 Score: 1363
Period size: 576 Copynumber: 1.9 Consensus size: 573
56446139 ATGGTACGAT
56446149 GGTTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAGA
1 GGTTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAGA
* * * *
56446214 TGAAATTTTAACAATAAAAAAAACTGATACGACGGTTTCACCAATTGTGTCATTTTATTATAAAA
66 GGAAATTTTAACAACAAAAAAAACTGATACGACGATTTCACCAATTGTGTCATTTTATCATAAAA
* * * * * *
56446279 TATTATTATTTTTATCATGTAACTGCTTTAAACCTATTGTCGTCTTATAATTTACTTAAGGATTT
131 TATTATCATTTTTATCATGAAACTGCTTTAAACCCATTGTCATCTTATAATTTACTTAAGAATGT
* * * * * * *
56446344 AAAATTAGAATTTAACTTAAAAGGGTTGAATAGACCTTCTACCTAGAATATTTATGGCCGATTAT
196 AAAATTAGAACTTAACTTAAAAGGGTTAAATAGACATTATACCAAGAATATTTATAGCCGACTAT
56446409 TGAAGTATGTATGCTATATTAAAAAAACATTAGTAATTAAAATTATAAAATGAAAACTTAATTAA
261 TGAAGTATGTATGCTATATTAAAAAAACATTAGTAATTAAAATTATAAAATGAAAACTTAATTAA
* * * *
56446474 ATAAAAAATAAGTAATAATGGAAATAGGTGGCAAAAACAAAAATATTTTCATCTTTTCTTCGTGC
326 ATAAAAAATAAGTAATAATGGAAATAGGTGGAAAAAACAAAAACATATCCATCTTTTCTTCGTGC
* * * * * * * *
56446539 AAATCAAACCAAGTAAGAAATAAGAGAGGAAGGTTCGGTTTTAATGGTGTAACGCCACAAAAATT
391 AAACCAAACCAAGGAAGAAAGAAGAGAGGAAGATTCGGCTTTAAAGGAGTAACACCACAAAAATT
* * * *
56446604 TTTGTTTTCGGATATGTTAAAAGATGTCAAGGGTGTAACCTTCGGCTTTGAATATATATATATAT
456 TTTGTTTTCGGAAATGTTAAAAGATGTCAAAGATGTAACATTCGGCTTTGAATATATATATATAT
56446669 ATATATATATATATATATATATATATATATGAGAACTTGTCGCTTGATTCAAC
521 ATATATATATATATATATATATATATATATGAGAACTTGTCGCTTGATTCAAC
* * * **
56446722 GGTTTCACCCATTGTGTTG-TCTTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGTGG
1 GGTTACACCCACTGTGTCGTTC-TATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAG
* ** * * *
56446786 AGGCAA-TTT-A-AACAAAAAAATTTGATACGACTATTTTACCCATTGTGTCATCTTT-TCATAA
65 AGGAAATTTTAACAACAAAAAAAACTGATACGACGATTTCACCAATTGTGTCAT-TTTATCATAA
* * *
56446847 AATATTATCATTTTTATCATGAAAGTG-TTGTAAACCCATTGTATCATCTTGTAATTTGCTTAAG
129 AATATTATCATTTTTATCATGAAACTGCTT-TAAACCCATTG--TCATCTTATAATTTACTTAAG
* * *
56446911 AATGTATAATTAGAACTTAA-TTTAAAGAGGTTAAATAGTA-ATTATATCAAGAATATATATATA
191 AATGTAAAATTAGAACTTAACTTAAAAG-GGTTAAATAG-ACATTATACCAAGAATAT-T-TATA
* * * *
56446974 GCGGGCTATTGAAGCAAGTATGTATGTTATATTAAAAAAA-ATTAGTAATTGAAATTATAAAATG
252 GCCGACTATT---G-AAGTATGTATGCTATATTAAAAAAACATTAGTAATTAAAATTATAAAATG
* * * *
56447038 AAAA-TTTATTAAATAGAATATAAGTAATAATGGGAATAGGTGGAAAAAACAAAAACATATCCAT
313 AAAACTTAATTAAATAAAAAATAAGTAATAATGGAAATAGGTGGAAAAAACAAAAACATATCCAT
* ** *
56447102 TTTTTCTTCGTGCAAACCAAACCAAGGGGGAAAGAAGAGAGGAATATTCGGCTTTAAAGGAGTAA
378 CTTTTCTTCGTGCAAACCAAACCAAGGAAGAAAGAAGAGAGGAAGATTCGGCTTTAAAGGAGTAA
* * * *
56447167 CACCCCAAAATTTTTTGTTATT-GGAAATGTTAAAATATGTCAAAGATGTAATATTCGGCTTT
443 CACCACAAAAATTTTTGTT-TTCGGAAATGTTAAAAGATGTCAAAGATGTAACATTCGGCTTT
56447229 AAAAATATTT
Statistics
Matches: 427, Mismatches: 66, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
569 2 0.00
570 73 0.17
571 10 0.02
572 60 0.14
573 62 0.15
574 10 0.02
576 156 0.37
577 30 0.07
578 24 0.06
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (573 bp):
GGTTACACCCACTGTGTCGTTCTATTATAAAAATATTATTATTTTTATCATGAAATTGTTGCAGA
GGAAATTTTAACAACAAAAAAAACTGATACGACGATTTCACCAATTGTGTCATTTTATCATAAAA
TATTATCATTTTTATCATGAAACTGCTTTAAACCCATTGTCATCTTATAATTTACTTAAGAATGT
AAAATTAGAACTTAACTTAAAAGGGTTAAATAGACATTATACCAAGAATATTTATAGCCGACTAT
TGAAGTATGTATGCTATATTAAAAAAACATTAGTAATTAAAATTATAAAATGAAAACTTAATTAA
ATAAAAAATAAGTAATAATGGAAATAGGTGGAAAAAACAAAAACATATCCATCTTTTCTTCGTGC
AAACCAAACCAAGGAAGAAAGAAGAGAGGAAGATTCGGCTTTAAAGGAGTAACACCACAAAAATT
TTTGTTTTCGGAAATGTTAAAAGATGTCAAAGATGTAACATTCGGCTTTGAATATATATATATAT
ATATATATATATATATATATATATATATATGAGAACTTGTCGCTTGATTCAAC
Found at i:56450119 original size:44 final size:43
Alignment explanation
Indices: 56450056--56450141 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 43
56450046 ATTTATTATT
56450056 TATAGAAACAAAAAAAATAAAGTTTTGTGTTTGAACTTCAACGG
1 TATAGAAACAAAAAAAATAAAGTTTTGTGTTTG-ACTTCAACGG
*
56450100 TATAGAAACAAAACAAATAAAGTTTTGTGTTTGACTTCAACG
1 TATAGAAACAAAAAAAATAAAGTTTTGTGTTTGACTTCAACG
56450142 TAAAGAACAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 9 0.22
44 32 0.78
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.30
Consensus pattern (43 bp):
TATAGAAACAAAAAAAATAAAGTTTTGTGTTTGACTTCAACGG
Found at i:56457117 original size:114 final size:114
Alignment explanation
Indices: 56456915--56457142 Score: 420
Period size: 114 Copynumber: 2.0 Consensus size: 114
56456905 TTTTTGTTAT
* *
56456915 ATGTCATATTTGTATAGCCAAATGTGTTGGCTTATAATGATGTGATGATTCATTTTGTATATGAC
1 ATGTCATAATTGTATAGCCAAATGTGTTGGCTTATAATAATGTGATGATTCATTTTGTATATGAC
*
56456980 CATGAGATATGGCTCATATTAATTATGGGGATGTAATCCTATTCATATA
66 CATGAGATATGGCTCATAGTAATTATGGGGATGTAATCCTATTCATATA
*
56457029 ATGTCATAATTGTATAGCCAAATGTGTTGGCTTATAATAATTTGATGATTCATTTTGTATATGAC
1 ATGTCATAATTGTATAGCCAAATGTGTTGGCTTATAATAATGTGATGATTCATTTTGTATATGAC
56457094 CATGAGATATGGCTCATAGTAATTATGGGGATGTAATCCTATTCATATA
66 CATGAGATATGGCTCATAGTAATTATGGGGATGTAATCCTATTCATATA
56457143 TGCATGCATG
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 110 1.00
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.40
Consensus pattern (114 bp):
ATGTCATAATTGTATAGCCAAATGTGTTGGCTTATAATAATGTGATGATTCATTTTGTATATGAC
CATGAGATATGGCTCATAGTAATTATGGGGATGTAATCCTATTCATATA
Found at i:56469230 original size:21 final size:20
Alignment explanation
Indices: 56469201--56469241 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
56469191 ACAAAACTTA
56469201 CATAACTATCATCAAACATT
1 CATAACTATCATCAAACATT
*
56469221 CATAATCTATCATCAATCATT
1 CATAA-CTATCATCAAACATT
56469242 AAAATATATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (20 bp):
CATAACTATCATCAAACATT
Found at i:56482153 original size:3 final size:3
Alignment explanation
Indices: 56482135--56482179 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
56482125 TTTTGTGTAG
*
56482135 TTA TTA TT- TTA -CA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
56482180 TTCTTTTCTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 3 0.08
3 35 0.92
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:56484428 original size:31 final size:31
Alignment explanation
Indices: 56484392--56484450 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
56484382 TTAAACTTAC
56484392 TGATGGAATTTAAATGATTAAACGTTTTTAA
1 TGATGGAATTTAAATGATTAAACGTTTTTAA
*
56484423 TGATGGAATTTAAATGATTAAATGTTTT
1 TGATGGAATTTAAATGATTAAACGTTTT
56484451 AGACTTGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.17, T:0.44
Consensus pattern (31 bp):
TGATGGAATTTAAATGATTAAACGTTTTTAA
Found at i:56487341 original size:33 final size:32
Alignment explanation
Indices: 56487268--56487345 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 32
56487258 AAGTGTTTAT
* * **
56487268 ATGTAAGACCATTACTGGGCTATGGCATTTTG
1 ATGTAAGACCATAACTGGGCTATGGCACTACG
*
56487300 ATGATAAGACCATAACTGGGTTATGGCACTACG
1 ATG-TAAGACCATAACTGGGCTATGGCACTACG
56487333 AATGTAAGACCAT
1 -ATGTAAGACCAT
56487346 GGCAAGGCCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
32 3 0.08
33 33 0.85
34 3 0.08
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (32 bp):
ATGTAAGACCATAACTGGGCTATGGCACTACG
Found at i:56491593 original size:17 final size:19
Alignment explanation
Indices: 56491551--56491595 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
56491541 CTTTATTTTC
*
56491551 TTATTTATTGTTCTACTAT
1 TTATTTATTGTTCTACTAG
56491570 TTAATTTATTGTTCTA-T-G
1 TT-ATTTATTGTTCTACTAG
56491588 TTATTTAT
1 TTATTTAT
56491596 CTTAGTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 6 0.25
18 2 0.08
19 3 0.12
20 13 0.54
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64
Consensus pattern (19 bp):
TTATTTATTGTTCTACTAG
Found at i:56495959 original size:30 final size:30
Alignment explanation
Indices: 56495918--56495974 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
56495908 TTACGAGCCT
* *
56495918 AGGGCCAAAATGTAAATATGTGAAAGTTTA
1 AGGGCCAAAATGCAAATATGTAAAAGTTTA
* *
56495948 AGGGTCAAAATGCAAATTTGTAAAAGT
1 AGGGCCAAAATGCAAATATGTAAAAGT
56495975 ATGATTTTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (30 bp):
AGGGCCAAAATGCAAATATGTAAAAGTTTA
Found at i:56496231 original size:18 final size:20
Alignment explanation
Indices: 56496195--56496241 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
56496185 AGTTGTAAGT
56496195 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
56496215 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
56496234 ATGATATA
1 AT-ATATA
56496242 ACTTGTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:56496768 original size:101 final size:97
Alignment explanation
Indices: 56496591--56496983 Score: 340
Period size: 101 Copynumber: 3.9 Consensus size: 97
56496581 TCGTTGTGAG
* * * * * *
56496591 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGGACTAGATTGATAGGTCGCATGTGTAATAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAC-AGATTGATAAGTCACATGTGTAGTAC
* *
56496656 TAAGTGCAGGCTACTATGCATACCCGTTAACTTCAA
65 TAAGTGCAGGCTACTATGCGTACCAGTT-A-TT-AA
* * * * *
56496692 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAGCCACATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATTGATAAGTCACATGTGTAGTAC
* * * * *
56496757 TAAGTGTAGGCTACTACGTGTACTAGATTGA-TAGG
65 TAAGTGCAGGCTACTATGCGTACCAG-TT-ATTA-A
* * * ** *
56496792 TCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACATG-TTAACTTCGTTCACGTGTGTAGT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACA-GATTGA-TAAG-TCACATGTGTAGT
* * **
56496856 ACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAA
63 ACTAAGTGCAGGCTACTATGCGTACCAG-TTATTAA
* * ** *
56496892 GTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCGTATGTGTAGTG
1 -TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CAGATTGATAAGTCACATGTGTAGTA
*
56496957 CTAAGTGTAGGCTACTATGCGTACCAG
64 CTAAGTGCAGGCTACTATGCGTACCAG
56496984 AGAGCTTCGG
Statistics
Matches: 234, Mismatches: 48, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
99 4 0.02
100 71 0.30
101 150 0.64
102 9 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (97 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACAGATTGATAAGTCACATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCAGTTATTAA
Found at i:56496877 original size:26 final size:26
Alignment explanation
Indices: 56496848--56496929 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
56496838 TTCGTTCACG
*
56496848 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* *
56496874 TGTGTA-T-C-AGATGGTTAAGTC-AC-A
1 TGTGTAGTACTA-A--GTGAAGGCTACTA
*
56496898 TGTGTAGTACTAAGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
56496924 TGTGTA
1 TGTGTA
56496930 CCAGATTGAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
23 1 0.02
24 14 0.33
25 6 0.14
26 20 0.48
27 1 0.02
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:56496981 original size:50 final size:50
Alignment explanation
Indices: 56496596--56496984 Score: 363
Period size: 50 Copynumber: 7.7 Consensus size: 50
56496586 GTGAGTCACG
* * *
56496596 TGTGTAGTACTAAGTGCAGGCTACTACGTGGACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* ** * * * * *
56496646 TGTGTAATACTAAGTGCAGGCTACTATGCATACCCG-TTAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--T-AGGTCGCA
* * * * * * *
56496697 TGTGTAGTACTAAGTGTAGGCTACTATGTGTATCAGATGGTTAAGCCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * *
56496747 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * * * * *
56496797 TGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CATG-TTAACTTCGTTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-GATTGA--TAGGTCGCA
* * * * *
56496848 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATGGTTAAGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* *
56496898 TGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCGTA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
* * *
56496948 TGTGTAGTGCTAAGTGTAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
56496985 GAGCTTCGGT
Statistics
Matches: 272, Mismatches: 57, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
49 8 0.03
50 188 0.69
51 71 0.26
52 5 0.02
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTCGCA
Found at i:56496992 original size:151 final size:151
Alignment explanation
Indices: 56496589--56496983 Score: 639
Period size: 151 Copynumber: 2.6 Consensus size: 151
56496579 ATTCGTTGTG
* * * *
56496589 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGGACTAGATTGATAGGTCGCATGTGTAAT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGT
* * * *
56496654 ACTAAGTGCAGGCTACTATGCATACCCGTTAACTTCAATCACGTGTGTAGTACTAAGTGTAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
56496719 ACTATGTGTATCAGATGGTTA
131 ACTATGTGTATCAGATGGTTA
*
56496740 AGCCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGT
*
56496805 ACTAAGTGCAGGCTACTATGCGTA-CATGTTAACTTCGTTCACGTGTGTAGTACTAAGTGCAGGC
66 ACTAAGTGCAGGCTACTATGCGTACCA-GTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGC
56496869 TACTATGTGTATCAGATGGTTA
130 TACTATGTGTATCAGATGGTTA
* * *
56496891 AGTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTACCAGATTGATAGGTCGTATGTGTAGT
1 AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGT
* *
56496956 GCTAAGTGTAGGCTACTATGCGTACCAG
66 ACTAAGTGCAGGCTACTATGCGTACCAG
56496984 AGAGCTTCGG
Statistics
Matches: 226, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
150 1 0.00
151 223 0.99
152 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (151 bp):
AGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGTTAACTTCGATCACGTGTGTAGTACTAAGTGCAGGCT
ACTATGTGTATCAGATGGTTA
Found at i:56505535 original size:40 final size:40
Alignment explanation
Indices: 56505410--56505560 Score: 157
Period size: 40 Copynumber: 3.8 Consensus size: 40
56505400 AATTGAATGA
* * * *
56505410 TATCCGGGCTAAGCCCCGAAGGCAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGACATTC
* * * *
56505450 TATCCGGGTTAAGACTCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCT-G-GACATTC
56505491 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GACATTC
*
56505530 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
56505561 ACGTGGTTAT
Statistics
Matches: 91, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 78 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGACATTC
Found at i:56505575 original size:80 final size:80
Alignment explanation
Indices: 56505409--56505576 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
56505399 AAATTGAATG
* * *
56505409 ATATCCGGGCTAAGCCCCGAAGGCAATTATGCTGGAAATTATATCCGGGTTAAGACTCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
56505474 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * *
56505489 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
56505552 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
56505569 ATATCCGG
1 ATATCCGG
56505577 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:56515664 original size:15 final size:15
Alignment explanation
Indices: 56515644--56515681 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
56515634 ATGATATTGC
56515644 ATCTTGGATTTC-CTT
1 ATCTTGGATTTCTC-T
56515659 ATCTTGGATTTCTCT
1 ATCTTGGATTTCTCT
56515674 ATCTTGGA
1 ATCTTGGA
56515682 GATCTTGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 21 0.95
16 1 0.05
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.50
Consensus pattern (15 bp):
ATCTTGGATTTCTCT
Found at i:56518027 original size:30 final size:30
Alignment explanation
Indices: 56517981--56518039 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
56517971 TTTACGAGCC
* *
56517981 TAGGGGCCAAAGTGCAAATATGTGAAAGTT
1 TAGGGGCCAAAATGCAAATATGTAAAAGTT
* *
56518011 TAGGGGTCAAAATGCAAATTTGTAAAAGT
1 TAGGGGCCAAAATGCAAATATGTAAAAGT
56518040 ATGATTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.27, T:0.25
Consensus pattern (30 bp):
TAGGGGCCAAAATGCAAATATGTAAAAGTT
Found at i:56518677 original size:50 final size:50
Alignment explanation
Indices: 56518596--56518909 Score: 230
Period size: 50 Copynumber: 6.3 Consensus size: 50
56518586 TTCGTTGTGA
* * *
56518596 GTCACGTGTGTAGTACTAAATCCAGGCTACTACGTGTACTAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAG
* * * * *
56518646 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCTTA-ACT--TCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA--C-TAGATTGATAG
* * * * * * * *
56518696 ATCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-TCAAATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATTGATAG
* *
56518746 GTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAG
* * ** *
56518796 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCT-G-TT--TAC
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CTAGATTGATAG
* * * * *
56518843 TTCGAACATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAA
1 GTC--ACA--TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAG
*
56518897 GTCACGTGTGTAG
1 GTCACATGTGTAG
56518910 CATACCAAAT
Statistics
Matches: 203, Mismatches: 44, Indels: 34
0.72 0.16 0.12
Matches are distributed among these distances:
46 1 0.00
47 5 0.02
48 1 0.00
49 4 0.02
50 149 0.73
51 31 0.15
52 6 0.03
53 2 0.01
54 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATTGATAG
Found at i:56518770 original size:100 final size:100
Alignment explanation
Indices: 56518597--56518777 Score: 256
Period size: 100 Copynumber: 1.8 Consensus size: 100
56518587 TCGTTGTGAG
* * * * *
56518597 TCACGTGTGTAGTACTAAATCCAGGCTACTACGTGTACTAGATTGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAATCCAGGCTACTACATGTACTAAATGGATAAGTCACATGTGTAGTAC
56518662 TAAGTGCAGGCTACTATGCGTACCCTTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCTTAACTTCGA
* ** * *
56518697 TCACGTGTGTAGTACTAAGTGTAGGCTACTACATGTA-TCAAATGGTTAAGTCACGTGTGTAGTA
1 TCACGTGTGTAGTACTAAATCCAGGCTACTACATGTACT-AAATGGATAAGTCACATGTGTAGTA
56518761 CTAAGTGCAGGCTACTA
65 CTAAGTGCAGGCTACTA
56518778 CGTGTACCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
99 1 0.01
100 69 0.99
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAATCCAGGCTACTACATGTACTAAATGGATAAGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCTTAACTTCGA
Found at i:56520424 original size:13 final size:13
Alignment explanation
Indices: 56520406--56520430 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
56520396 GAATTGATGT
56520406 TATAATGTGTATC
1 TATAATGTGTATC
56520419 TATAATGTGTAT
1 TATAATGTGTAT
56520431 AAGTATGGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.16, T:0.48
Consensus pattern (13 bp):
TATAATGTGTATC
Found at i:56523791 original size:12 final size:12
Alignment explanation
Indices: 56523769--56523812 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
56523759 AAGTTTAAGA
*
56523769 AAATAACAATAG
1 AAATAAAAATAG
*
56523781 ACATAAAAATAG
1 AAATAAAAATAG
* *
56523793 AAATAAAACTAA
1 AAATAAAAATAG
56523805 AAATAAAA
1 AAATAAAA
56523813 TAAATGGACT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.16
Consensus pattern (12 bp):
AAATAAAAATAG
Found at i:56527071 original size:39 final size:39
Alignment explanation
Indices: 56527017--56527198 Score: 294
Period size: 39 Copynumber: 4.7 Consensus size: 39
56527007 GAATGTTCGA
56527017 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
56527056 GTGATATCCAGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
56527095 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* *
56527133 ATGATATCTGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
56527172 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
56527199 CTTTGTGCGG
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
38 34 0.26
39 87 0.67
40 9 0.07
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:56527109 original size:77 final size:78
Alignment explanation
Indices: 56527017--56527198 Score: 294
Period size: 77 Copynumber: 2.3 Consensus size: 78
56527007 GAATGTTCGA
*
56527017 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCAGGCTAAGCCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCAGGCTAAGCCCGAAGGC
56527082 AATTGTGCAAATT
66 AATTGTGCAAATT
* * **
56527095 GTGATA-CCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTATGATATCTGGGCTAAGCCCGAAGGC
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCAGGCTAAGCCCGAAGGC
56527159 AATTGTGCAAATT
66 AATTGTGCAAATT
*
56527172 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
56527199 CTTTGTGCGG
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
77 72 0.75
78 15 0.16
79 9 0.09
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (78 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTATGATATCCAGGCTAAGCCCGAAGGC
AATTGTGCAAATT
Found at i:56534362 original size:39 final size:39
Alignment explanation
Indices: 56534308--56534490 Score: 303
Period size: 39 Copynumber: 4.7 Consensus size: 39
56534298 GAATGTTCGA
56534308 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
56534347 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* ** *
56534386 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGTGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
56534425 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
56534464 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
56534491 CTTTGTGCGG
Statistics
Matches: 132, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 123 0.93
40 9 0.07
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:56535484 original size:46 final size:48
Alignment explanation
Indices: 56535333--56535602 Score: 271
Period size: 46 Copynumber: 5.8 Consensus size: 48
56535323 GGGGTAAGGT
* * *
56535333 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCTG-T
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCTC-GAG
* *
56535383 TCCCATGCCATGTCCCAGACATGGTCTTACACT-GAC--ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTCG-AG
* *
56535429 GCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAG
* *
56535475 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCGAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-TACATCTCGAG
* *
56535521 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACAT-CTCGAG
*
56535569 GCCGATG-GATGTCCCAGA-AT-GTCTTACACTAGCT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT
56535603 CACACAAGTG
Statistics
Matches: 192, Mismatches: 16, Indels: 29
0.81 0.07 0.12
Matches are distributed among these distances:
44 11 0.06
45 31 0.16
46 66 0.34
47 26 0.14
48 24 0.12
49 2 0.01
50 32 0.17
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCGAG
Found at i:56535548 original size:94 final size:92
Alignment explanation
Indices: 56535331--56535606 Score: 321
Period size: 94 Copynumber: 3.0 Consensus size: 92
56535321 ATGGGGTAAG
* ** *
56535331 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATATCTGTTCCCATGCCATGT
1 GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATATC-GGGCCGATG-CATGT
*
56535396 CCCAGACATGGTCTTACACT-G-ACACATCTC
62 CCCAGACAT-GTCTTACACTAGCTCACATCTC
* * *
56535426 GTAGCTGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCGATGCATGTCC
1 GT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCG-GGCCGATGCATGTCC
* *
56535489 CAGACATGTCTTACACTAGCTCTCGTCTC
64 CAGACATGTCTTACACTAGCTCACATCTC
*
56535518 GATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATAAT-GTGGCCGATGGATGTC
1 G-TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACAT-ATCG-GGCCGATGCATGTC
56535582 CCAGA-ATGTCTTACACTAGCTCACA
63 CCAGACATGTCTTACACTAGCTCACA
56535607 CAAGTGACCC
Statistics
Matches: 156, Mismatches: 17, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
90 10 0.06
91 16 0.10
92 23 0.15
93 34 0.22
94 50 0.32
95 17 0.11
96 6 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (92 bp):
GTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCGGGCCGATGCATGTCCCA
GACATGTCTTACACTAGCTCACATCTC
Found at i:56540856 original size:6 final size:6
Alignment explanation
Indices: 56540847--56540900 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
56540837 AATAAAATTG
* *
56540847 AAATGA AAATAA AAATAGA AAAT-A AAATAA AAATAA GAATAA ATAATAA
1 AAATAA AAATAA AAATA-A AAATAA AAATAA AAATAA AAATAA A-AATAA
56540896 TAAAT
1 -AAAT
56540901 TAGGAAGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
5 5 0.12
6 22 0.54
7 13 0.32
8 1 0.02
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:56540867 original size:18 final size:18
Alignment explanation
Indices: 56540827--56540881 Score: 67
Period size: 18 Copynumber: 2.9 Consensus size: 18
56540817 TATGTCTTTC
*
56540827 AAAATAAAATAATAAAATTG
1 AAAATAAAAT-A-AAAATAG
56540847 -AAATGAAAATAAAAATAG
1 AAAAT-AAAATAAAAATAG
56540865 AAAATAAAATAAAAATA
1 AAAATAAAATAAAAATA
56540882 AGAATAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 18 0.56
19 9 0.28
20 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (18 bp):
AAAATAAAATAAAAATAG
Found at i:56540879 original size:24 final size:24
Alignment explanation
Indices: 56540847--56540895 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
56540837 AATAAAATTG
*
56540847 AAATGAAAATAAAAATAGAA-AATA
1 AAATAAAAATAAAAATA-AATAATA
*
56540871 AAATAAAAATAAGAATAAATAATA
1 AAATAAAAATAAAAATAAATAATA
56540895 A
1 A
56540896 TAAATTAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (24 bp):
AAATAAAAATAAAAATAAATAATA
Found at i:56543236 original size:22 final size:22
Alignment explanation
Indices: 56543197--56543255 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
56543187 GTTTTAAGAA
*
56543197 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
56543218 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
56543240 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
56543256 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:56543272 original size:26 final size:24
Alignment explanation
Indices: 56543226--56543285 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
56543216 ATTTGTTTTA
*
56543226 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
56543250 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
56543276 TTTTTTATTT
1 ATATTTATTT
56543286 AATGAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:56555610 original size:30 final size:30
Alignment explanation
Indices: 56555576--56555632 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
56555566 CATGGGCTGG
* *
56555576 CACATAGGCATGTGGCTAGCCCGTGTGGTT
1 CACATAGGCATGTGCCCAGCCCGTGTGGTT
56555606 CACATAGGCATGTGCCCAGCCCGTGTG
1 CACATAGGCATGTGCCCAGCCCGTGTG
56555633 AAAATACCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (30 bp):
CACATAGGCATGTGCCCAGCCCGTGTGGTT
Found at i:56556652 original size:25 final size:25
Alignment explanation
Indices: 56556616--56556666 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
56556606 TAGGGTGTTA
*
56556616 CAGTTTGTAATACTAAAGTTCTATC
1 CAGTTTGCAATACTAAAGTTCTATC
56556641 CAGTTTGCAATACTAAAGTTCTATC
1 CAGTTTGCAATACTAAAGTTCTATC
56556666 C
1 C
56556667 CCGTGACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (25 bp):
CAGTTTGCAATACTAAAGTTCTATC
Found at i:56559820 original size:13 final size:13
Alignment explanation
Indices: 56559802--56559860 Score: 50
Period size: 13 Copynumber: 4.5 Consensus size: 13
56559792 TAATTTGACC
56559802 AATTGATTCTAAT
1 AATTGATTCTAAT
*
56559815 AATTGATTCTATT
1 AATTGATTCTAAT
* *
56559828 AACT-AGTT-TGACT
1 AATTGA-TTCT-AAT
56559841 AATTGATTCTAAT
1 AATTGATTCTAAT
*
56559854 AACTGAT
1 AATTGAT
56559861 ATTATGATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
12 2 0.06
13 32 0.89
14 2 0.06
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (13 bp):
AATTGATTCTAAT
Found at i:56562089 original size:29 final size:27
Alignment explanation
Indices: 56562028--56562088 Score: 122
Period size: 27 Copynumber: 2.3 Consensus size: 27
56562018 ACGGCTAAGC
56562028 CACACACCTGTGTGGCAGGCCATGTGT
1 CACACACCTGTGTGGCAGGCCATGTGT
56562055 CACACACCTGTGTGGCAGGCCATGTGT
1 CACACACCTGTGTGGCAGGCCATGTGT
56562082 CACACAC
1 CACACAC
56562089 AGCTGAGACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.20
Consensus pattern (27 bp):
CACACACCTGTGTGGCAGGCCATGTGT
Found at i:56563376 original size:26 final size:26
Alignment explanation
Indices: 56563301--56563377 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
56563291 TTAGGAAGTT
56563301 CAAACGAGCCATAT-T-GAGAAGCTCA
1 CAAA-GAGCCATATATCGAGAAGCTCA
*
56563326 CAAAGAGCC-TTTAATC-AGGAAGCTCA
1 CAAAGAGCCATAT-ATCGA-GAAGCTCA
* *
56563352 CGAAGAGCCATATATCGAGACGCTCA
1 CAAAGAGCCATATATCGAGAAGCTCA
56563378 TAAGAGTTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
23 2 0.05
24 5 0.12
25 6 0.14
26 26 0.62
27 3 0.07
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (26 bp):
CAAAGAGCCATATATCGAGAAGCTCA
Found at i:56571451 original size:46 final size:46
Alignment explanation
Indices: 56571401--56571521 Score: 129
Period size: 46 Copynumber: 2.6 Consensus size: 46
56571391 CATAGCCAAC
* * *
56571401 GCATGTCCCAGACATGTCTTACACT-GTC-TTACGTCTCGAGGCCGAT
1 GCATGTCTCAGACATGTCTTACACTAG-CACT-CGTCTCAAGGCCGAT
* * *
56571447 GCATGTCTTAGACATGTCTTATACTAGCACTCGTCTCAATGCCGAT
1 GCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
*
56571493 GCCATGTCTCAAACATGGTCTTACACTAG
1 G-CATGTCTCAGACAT-GTCTTACACTAG
56571522 ATCTCACAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
46 37 0.60
47 14 0.23
48 11 0.18
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (46 bp):
GCATGTCTCAGACATGTCTTACACTAGCACTCGTCTCAAGGCCGAT
Found at i:56586329 original size:46 final size:44
Alignment explanation
Indices: 56586234--56586348 Score: 133
Period size: 46 Copynumber: 2.5 Consensus size: 44
56586224 TTGTCGATGT
* *
56586234 CATGTCCCAGATATGGTCTTACACTGACACATCTAGCAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACACATCTAGCAGCCGAAG
* * *
56586279 CATGTCCCAGACATGTCTTACACTGGCTTACGTCTCG-AGGCCGAAG
1 CATGTCCCAGACATGTCTTACACTGAC--ACATCTAGCA-GCCGAAG
*
56586325 CATGTCCCAGACATCTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
56586349 AGCACTCGTC
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
44 12 0.20
45 14 0.23
46 35 0.57
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.25
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGACACATCTAGCAGCCGAAG
Found at i:56586359 original size:46 final size:46
Alignment explanation
Indices: 56586272--56586397 Score: 146
Period size: 46 Copynumber: 2.7 Consensus size: 46
56586262 ACATCTAGCA
* * *
56586272 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAG
* * *
56586318 GCCGAAGCATGTCCCAGACATCTCTTACACTAGCACT-CGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-CTACGTCTCAAG
* *
56586364 GCCGATGCCATGTCCAAAACATGGTCTTACACTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTA
56586398 ACTCTCATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 44 0.66
47 13 0.19
48 10 0.15
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCCTACGTCTCAAG
Found at i:56588329 original size:39 final size:40
Alignment explanation
Indices: 56588196--56588406 Score: 225
Period size: 40 Copynumber: 5.3 Consensus size: 40
56588186 AGCATTTGAA
* * * *
56588196 TATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAA
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-T
* *
56588236 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTG-T
*
56588276 TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGT
* **
56588315 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTAC
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGT
* * * * * *
56588355 CAAATCCGGGTTAAGACCC-AAGGCAATTGTGCTTGTGGT
1 TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGT
56588394 TATATCC-GGCTAA
1 TATATCCGGGCTAA
56588407 ATTCCGAAGA
Statistics
Matches: 149, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
38 5 0.03
39 54 0.36
40 90 0.60
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTTGT
Found at i:56588337 original size:79 final size:79
Alignment explanation
Indices: 56588196--56588406 Score: 232
Period size: 79 Copynumber: 2.7 Consensus size: 79
56588186 AGCATTTGAA
* * * * *
56588196 TATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGAATATATCCGGGCTAAGTCCCGAAGG
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGG
* *
56588260 CATTTATGCTAGTGAT
64 CATTTATGCAAGTGAC
56588276 TATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTTGTTATATCCGGGCTAAGACCCGAAGGC
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGC
* *
56588340 ATTTGTGCAAGTTAC
65 ATTTATGCAAGTGAC
* * * * *
56588355 CAAATCCGGGTTAAGACCC-AAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGCTAGTTGTTATATCCGGGCTAA
56588407 ATTCCGAAGA
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
78 15 0.13
79 69 0.61
80 29 0.26
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.27
Consensus pattern (79 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTATGCAAGTGAC
Found at i:56596374 original size:40 final size:40
Alignment explanation
Indices: 56596318--56596508 Score: 213
Period size: 40 Copynumber: 4.8 Consensus size: 40
56596308 CATGAGCATT
* *
56596318 TGAATAATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAAT-ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
*
56596359 TGAATATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * ** *
56596399 TGATTATATCCGGGCTAAGACCTGAAGGCATTCGTGCGAG
1 TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* * *
56596439 TTG-TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG
1 -TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
* ** * *
56596479 TTACCAAATCCGGGTTAAGACCCGAAGGCA
1 TGAATATATCCGGGCTAAGACCCGAAGGCA
56596509 ATTGTGCTTG
Statistics
Matches: 133, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.94
41 7 0.05
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TGAATATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG
Found at i:56596525 original size:80 final size:80
Alignment explanation
Indices: 56596328--56596529 Score: 235
Period size: 80 Copynumber: 2.5 Consensus size: 80
56596318 TGAATAATAC
* * * ** *
56596328 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATATCCGGGCTAAGTCCCGAAGGCATTTA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
* ** *
56596393 TGCTAGTGATTATAT
66 TGCAAGTGACCAAAT
* * *
56596408 CCGGGCTAAGACCTGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTT
* *
56596472 GTGCAAGTTACCAAAT
65 ATGCAAGTGACCAAAT
* *
56596488 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCC
56596530 AGCTAAATTC
Statistics
Matches: 100, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
79 2 0.02
80 95 0.95
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTTA
TGCAAGTGACCAAAT
Found at i:56600674 original size:32 final size:31
Alignment explanation
Indices: 56600617--56600679 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
56600607 AGTAATTCGT
* *
56600617 AAAGGGTTTTAGTTGAGCCACAAAAAACTAGG
1 AAAGGGTTCTAGTTAAGCCAC-AAAAACTAGG
**
56600649 AAAGGGTTCTAGTTAAGCCTTAAAAACTAGG
1 AAAGGGTTCTAGTTAAGCCACAAAAACTAGG
56600680 GGGAAGGTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.24
Consensus pattern (31 bp):
AAAGGGTTCTAGTTAAGCCACAAAAACTAGG
Found at i:56604251 original size:143 final size:142
Alignment explanation
Indices: 56604049--56606322 Score: 2544
Period size: 143 Copynumber: 16.0 Consensus size: 142
56604039 TTTCGAGGTA
* * * *
56604049 AAGTTCTTATCTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTGAGG
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * *
56604114 CGCAGTTCGTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTGCCA
65 CGAAG-TCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* * *
56604179 TGAGATGCATACCA
129 TGTGATGCATAGCG
* *
56604193 AAGTTCTTATGTCTTGTGATTTTTTTTAATTTAATTTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * * *
56604258 GAAATCAATTACAGAATTAAAGATAAAGTATAAACTTTTAACAAGTTAAAATGGAAATTTACCAT
66 GAAGTC-GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
56604323 GTGATGCA-AGCG
130 GTGATGCATAGCG
* * * * * *
56604335 AAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTGTTAAATATTGAGAAC-CGAATTTTAAAG
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATT-AAAACTCGAATTTTGAGG
* * * * *
56604399 CGAAGTCCGTTACAAAATTAAAGATAAAGTATAAATTTTTAAGAGGTTACAATGGAAATATATCA
65 CGAAGT-CGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
*
56604464 TGTGATGCATAACG
129 TGTGATGCATAGCG
* * * * *
56604478 AAGTTCTTATGTCTTATAATTTTTTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTGAA
1 AAGTTCTTATGTCTTATGA-TTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAG
* * * * * *
56604543 GTGAAGTCGTTAC-GAAATAAAAAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTACC
64 GCGAAGTCGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
56604607 -----ATG--T---G
128 ATGTGATGCATAGCG
* ** * *
56604612 AAGTTATTATGTCTTATGATTGTTTTCCAATTTTATTTTTAAATATTGAAACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * *
56604677 CTAAGTCCGTTAC-GAAATCAAAGATAAAGTATAAAATTTTAAGCA-GTTAAAATGAAAATTTAC
65 CGAAGT-CGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAG-AGGTTAAAATGGAAATTTAC
56604740 CATGTGATGCATAGCG
127 CATGTGATGCATAGCG
* * * * *
56604756 AAGTTCTTATGTCATATGATTTTTTTTAATTTCA-TTTTAAATATTGAAACTCAAATTTTGGGGT
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * * * * * *
56604820 GAAGCCCATTACGGAATCAGAGGTCAAGTATAAATTTTTAAAAGGTTAAAATGAAAATTTACAAT
66 GAAG-TCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
*
56604885 GTGATGCATAGCA
130 GTGATGCATAGCG
* * *
56604898 AAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGACACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * *
56604963 CGAAGTCTGTTACAGAATCAAAGATAAAATATAAATTGTTAAGAGGTTAAAAAGGAAATTTACTA
65 CGAAGTC-GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
56605028 TGTGATGCATAGCG
129 TGTGATGCATAGCG
*
56605042 AAGTTCTTATGTCTTATGATGTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * *
56605107 GAAGTCAGTTACAGAACCAAAGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCAT
66 GAAGTC-GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
* *
56605172 GTGATGCACAACG
130 GTGATGCATAGCG
** * ** * * * *
56605185 AAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * *
56605250 GAAGTCGGTTACAAAATCAAAGATAAAGTATAAATCTTTAAGAGGTTAAAATGGAAATTTACAAT
66 GAAGTC-GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
* **
56605315 ATGATGCATAGAA
130 GTGATGCATAGCG
* ** * * * ** * *
56605328 AAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * *
56605393 CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCAT
66 GAAGT-CGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
56605458 GTGATGCATAGCG
130 GTGATGCATAGCG
* ** * *
56605471 AAGTTCCTATGTCTTATGA-AGTTTTTAATTTCATCTTTAAGTATTAAAACTCGAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * * * *
56605535 GAAGTTGGTTACAAAATCAAAGATATATTATAAAATTTTAAGAGGTTAAAATGGAAATTTACCAT
66 GAAG-TCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
* *
56605600 GTGATGCACAACG
130 GTGATGCATAGCG
** * * * *
56605613 AAGTTCTCGTGTCTTATGATTCTTTTTAATTTCAATTTTAAATATTAAAATTCAAATTTCT-AGG
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTT-TGAGG
* * *
56605677 CGAAGTCGATTATAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTGCAA
65 CGAAGTCG-TTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* * *
56605742 TGTGATGTATAACA
129 TGTGATGCATAGCG
* * * ** *
56605756 AAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAGGC
1 AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
* * ** *
56605821 CAAGTCTGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAATTTAGAAATTTACCAT
66 GAAGTC-GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCAT
56605886 GTGATGCATAGCG
130 GTGATGCATAGCG
* * * * *
56605899 AAGTTTTTATGTCATATGATTTTTTTTCAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGA
1 AAGTTCTTATGTCTTATGATTTTTTTT-AATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * *
56605964 CAAAGTCCGTTAC-G-GT-AACA-ATAAAGTATATATTTTTAAGAGATTAAAATGGAAATTTACC
65 CGAAGT-CGTTACAGAATCAA-AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACC
*
56606025 ATGTGATGCACAGC-
128 ATGTGATGCATAGCG
* * *
56606039 ATGGTTCTTATGTCGTATGATTTTTTTTAATTTCATTCTTAAATATTAAAACTCGAATTTTGAGG
1 A-AGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * *
56606104 CGAAGTCGGTTACATAATGAAAGATATAGTATAAACTTTTAAGAGGTTAAAATGGAAATTAACCA
65 CGAAGTC-GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
* * *
56606169 TGGGGTGCATAGAG
129 TGTGATGCATAGCG
** * *
56606183 AAGTTCTCGTGTCTTATGATTCTTTTTT-ATTTCATTTTTAATTATTGAAACTCGAATTTTGAGG
1 AAGTTCTTATGTCTTATGATT-TTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGG
* * * * * * * *
56606247 CAAAGTCCATTACGGAATCAAAGATAAATTATATATTTTTAAGAGGTTAAAATGAAAACTTACCT
65 CGAAGT-CGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCA
56606312 TGTGATGCATA
129 TGTGATGCATA
56606323 ATGAAGATCT
Statistics
Matches: 1797, Mismatches: 287, Indels: 93
0.83 0.13 0.04
Matches are distributed among these distances:
133 37 0.02
134 70 0.04
135 1 0.00
137 1 0.00
139 7 0.00
140 44 0.02
141 76 0.04
142 359 0.20
143 897 0.50
144 273 0.15
145 32 0.02
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (142 bp):
AAGTTCTTATGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAACTCGAATTTTGAGGC
GAAGTCGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATG
TGATGCATAGCG
Found at i:56605634 original size:428 final size:428
Alignment explanation
Indices: 56604048--56606322 Score: 2714
Period size: 428 Copynumber: 5.3 Consensus size: 428
56604038 ATTTCGAGGT
* * * *
56604048 AAAGTTCTTATCTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGAAATTCAAATTTTGAG
1 AAAGTTCTCATGTCTTATGATTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAG
* ** *
56604113 GCGC-AGTTCGTTACAAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTGC
65 GC-CAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTAC
* * * * * *
56604177 CATGAGATGCATACCAAAGTTCTTATGTCTTGTGATTTTTTTTAATTTAATTTTTAAATATTAAA
129 CATGTGATGCATAGCGAAGTTCTTATGTCTTATGATTGTTTTTAATTTCATTTTTAAATATTAAA
* * * * * * * *
56604242 ACTCGAATTTTGAGGCGAAATCAATTACAGAATTAAAGATAAAGTATAAACTTTTAACAAGTTAA
194 ACTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAA
56604307 AATGGAAATTTACCATGTGATGCA-AGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATT
259 AATGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATT
* * * * * *
56604371 GTTAAATATTGAGAAC-CGAATTTTAAAGCGAAGTCCGTTACAAAATTAAAGATAAAGTATAAAT
324 -TTAAATATT-AAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAAT
* *
56604435 TTTTAAGAGGTTACAATGGAAATATATC-ATGTGATGCATA-A
387 TTTTAAGAGGTTAAAATGGAAATTTA-CAATGTGATGCATAGA
* * * * * *** *
56604476 CGAAGTTCTTATGTCTTATAATTTTTTTTTCAATTTCATTTTTAAATATTAAAACTTGGACTTTG
1 -AAAGTTCTCATGTCTTATGA-TTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTG
* ** * * * * * * *
56604541 AAGTGAAGT-CGTTACGAAATAAAAAATAAAGTACAAATTTTGAAAAGGTTAAAATGGAAATTTA
63 AGGCCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTA
* * * *
56604605 CC-----ATG--T---GAAGTTATTATGTCTTATGATTGTTTTCCAATTTTATTTTTAAATATTG
128 CCATGTGATGCATAGCGAAGTTCTTATGTCTTATGATTGTTTT-TAATTTCATTTTTAAATATTA
* * * *
56604660 AAACTCGAATTTTGAGGCTAAGTCCGTTACGAAATCAAAGATAAAGTATAAAATTTTAAGCA-GT
192 AAACTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAG-AGGT
* * * * *
56604724 TAAAATGAAAATTTACCATGTGATGCATAGCGAAGTTCTTATGTCATATGATTTTTTTTAATTTC
256 TAAAATGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTC
* * * * ** ** * * *
56604789 ATTTTAAATATTGAAACTCAAATTTTGGGGTGAAGCCCATTACGGAATCAGAGGTCAAGTATAAA
321 ATTTTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAA
* * *
56604854 TTTTTAAAAGGTTAAAATGAAAATTTACAATGTGATGCATAGC
386 TTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGA
* * *
56604897 AAAGTTCTCATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGACACTCGAATTTTGAG
1 AAAGTTCTCATGTCTTATGATTCTTTTT-AATTTCATTTTTAAATATTGAAACTCAAATTTTGAG
* * * * * *
56604962 GCGAAGTCTGTTACAGAATCAAAGATAAAATATAAATTGTTAAGAGGTTAAAAAGGAAATTTACT
65 GCCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACC
56605027 ATGTGATGCATAGCGAAGTTCTTATGTCTTATGA-TGTTTTTTAATTTCATTTTTAAATATTAAA
130 ATGTGATGCATAGCGAAGTTCTTATGTCTTATGATTG-TTTTTAATTTCATTTTTAAATATTAAA
* * *
56605091 ACTCGAATTTTGAGGCGAAGTCAGTTACAGAACCAAAGATATATTATAAAATTTTAAGAGGTTAA
194 ACTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAA
* * * *
56605156 AATGGAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTGTTATGATTCCTTTTAATTTCAAT
259 AATGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTC-AT
* * *
56605221 TTTAAATATTAAAATTCAAATTTCGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATC
323 TTTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATT
*
56605286 TTTAAGAGGTTAAAATGGAAATTTACAATATGATGCATAGA
388 TTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGA
* * * * **
56605327 AAAATTCTCGTATCTTATAATTCTTACTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
1 AAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
56605392 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
66 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
* * * *
56605457 TGTGATGCATAGCGAAGTTCCTATGTCTTATGA-AGTTTTTAATTTCATCTTTAAGTATTAAAAC
131 TGTGATGCATAGCGAAGTTCTTATGTCTTATGATTGTTTTTAATTTCATTTTTAAATATTAAAAC
** *
56605521 TCGAATTTTGAGGCGAAGTTGGTTACAAAATCAAAGATATATTATAAAATTTTAAGAGGTTAAAA
196 TCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAA
* *
56605586 TGGAAATTTACCATGTGATGCACAACGAAGTTCTCGTGTCTTATGATTCTTTTTAATTTCAATTT
261 TGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTC-ATTT
* * * *
56605651 TAAATATTAAAATTCAAATTTCT-AGGCGAAGTCGATTATAGAATCAAAGATAAAGTATAAATTT
325 TAAATATTAAAACTCAAATTT-TGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATTT
* *
56605715 TTAAGAGGTTAAAATGGAAATTTGCAATGTGATGTATA-A
389 TTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGA
* *
56605754 CAAAGTTCTCATGTCTTATGATTCTTATTAATTTCATTTTTAAATATTGGAACTCAAATTTTGAG
1 -AAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAG
* **
56605819 GCCAAGTCTGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAATTTA-GAAATTTAC
65 GCCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAA-AAAGGAAATTTAC
* * * *
56605883 CATGTGATGCATAGCGAAGTTTTTATGTCATATGATTTTTTTTCAATTTCATTTTTAAATATTGA
129 CATGTGATGCATAGCGAAGTTCTTATGTCTTATGATTGTTTTT-AATTTCATTTTTAAATATTAA
* * * * ** * * * *
56605948 AACTCAAATTTTGAGACAAAGTCCGTTAC--GGT-AACA-ATAAAGTATATATTTTTAAGAGATT
193 AACTCGAATTTTGAGGCGAAGTCAGTTACAAAATCAA-AGATATAGTATAAAATTTTAAGAGGTT
* * * *
56606009 AAAATGGAAATTTACCATGTGATGCACAGC-ATGGTTCTTATGTCGTATGATTTTTTTTAATTTC
257 AAAATGGAAATTTACCATGTGATGCACAGCGA-AGTTCTCATGTCTTATGATTCTTTTTAATTTC
* * * *
56606073 ATTCTTAAATATTAAAACTCGAATTTTGAGGCGAAGTCGGTTACATAATGAAAGATATAGTATAA
321 ATT-TTAAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAA
* * * * *
56606138 ACTTTTAAGAGGTTAAAATGGAAATTAACCATGGGGTGCATAGA
385 ATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGA
* * * * *
56606182 GAAGTTCTCGTGTCTTATGATTCTTTTTTATTTCATTTTTAATTATTGAAACTCGAATTTTGAGG
1 AAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
* * * * * * * *
56606247 CAAAGTCCATTACGGAATCAAAGATAAATTATATATTTTTAAGAGGTTAAAATGAAAACTTACCT
66 CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
56606312 TGTGATGCATA
131 TGTGATGCATA
56606323 ATGAAGATCT
Statistics
Matches: 1593, Mismatches: 220, Indels: 68
0.85 0.12 0.04
Matches are distributed among these distances:
419 72 0.05
420 237 0.15
421 38 0.02
422 1 0.00
424 3 0.00
425 3 0.00
426 5 0.00
427 289 0.18
428 397 0.25
429 330 0.21
430 218 0.14
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (428 bp):
AAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGG
CCAAGTCCGTTACGGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCA
TGTGATGCATAGCGAAGTTCTTATGTCTTATGATTGTTTTTAATTTCATTTTTAAATATTAAAAC
TCGAATTTTGAGGCGAAGTCAGTTACAAAATCAAAGATATAGTATAAAATTTTAAGAGGTTAAAA
TGGAAATTTACCATGTGATGCACAGCGAAGTTCTCATGTCTTATGATTCTTTTTAATTTCATTTT
AAATATTAAAACTCAAATTTTGAGGCGAAGTCGGTTACAAAATCAAAGATAAAGTATAAATTTTT
AAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGA
Found at i:56606630 original size:142 final size:144
Alignment explanation
Indices: 56606364--56606635 Score: 309
Period size: 142 Copynumber: 1.9 Consensus size: 144
56606354 AAAGAAGTTG
* ** * * *
56606364 TTCTTATGTCTTATGATTTTTTTTCAATTTCATTTTTAAATATTGAAACTTAAATTTTGAGGCTA
1 TTCTTATGTCATATGATTTTTTTTCAATTTCATTTTTAAATATCAAAACTGAAATTTTAAGGCGA
** ** * *
56606429 AGTCCATTATGGAATCAAAGATAAAATATAATTTTTTAAGAGGTTAAAAAAGAAATTTACTATGT
66 AGTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAAGTTAAAAAAGAAATTTACCATGT
56606494 GATGTATACCGAAA
131 GATGTATACCGAAA
56606508 TTCTTATGTCATATGA-TTTTTTTC-ATTTCATTTTTAAATATCAAAACTCGAAA-TTTAAGGCG
1 TTCTTATGTCATATGATTTTTTTTCAATTTCATTTTTAAATATCAAAACT-GAAATTTTAAGGCG
*** * * * ** *
56606570 AAGTTGGTTACAGAATCAAAGATATAGTGTAAACTTTTACTAAGTT-AAAATGAAATTTTACCAT
65 AAGTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAAGTTAAAAAAGAAA-TTTACCAT
56606634 GT
129 GT
56606636 AATGGATAAC
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
141 8 0.08
142 71 0.68
143 11 0.10
144 15 0.14
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (144 bp):
TTCTTATGTCATATGATTTTTTTTCAATTTCATTTTTAAATATCAAAACTGAAATTTTAAGGCGA
AGTCCATTACAGAATCAAAGATAAAATATAAACTTTTAAGAAGTTAAAAAAGAAATTTACCATGT
GATGTATACCGAAA
Found at i:56607410 original size:142 final size:141
Alignment explanation
Indices: 56607203--56607959 Score: 733
Period size: 142 Copynumber: 5.4 Consensus size: 141
56607193 TCATAGTTAT
* * * * *
56607203 AGTAGAAAGTTTTATGAGGTTCAAATTGAAATTTACCATGTGATGCATAGTGAAGTTCTTC-TGT
1 AGTATAAAGTTTTAAGAGGTT-AAATGGAAATTTACAATGTGATGTATAGTGAAGTTC-TCGTGT
* * * * * * **
56607267 TTTATGATATTTTTAATTTCATTCTTAAATATTAAAATTTGAATTTTGAGGCAAAGTTGGTTACA
64 TTTATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACA
56607332 GAATTAAAGATAA
129 GAATTAAAGATAA
* * ***
56607345 AGTATAAATTTTTAAGAGGTTAAGATGAAAATTTACAATGTGATGTATAAACAAGTTCTCGTGTT
1 AGTATAAAGTTTTAAGAGGTTAA-ATGGAAATTTACAATGTGATGTATAGTGAAGTTCTCGTGTT
*
56607410 TTATG---------A-TTC-TTTTTAAATATTGAAACTCGAATTTTGAGGC-ATAGACCGTTACA
65 TTATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGA-AGTCCGTTACA
56607463 GAATTAAAGATAA
129 GAATTAAAGATAA
* *
56607476 AGTATAAAATTTTAAGAGGTTACAATGGTAATTTACAATGTGATGCT-TAGTGAAGTTCTCGTGT
1 AGTATAAAGTTTTAAGAGGTTA-AATGGAAATTTACAATGTGATG-TATAGTGAAGTTCTCGTGT
* * * * * *
56607540 CTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCAAACTTTAAGGCGAAGTCCATTGC
64 TTTATGA-TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTAC
56607605 -GAAATTAAAGATAA
128 AG-AATTAAAGATAA
* * * *
56607619 AATATAAAGTTTTAAGAGGTTAAAATGGTAATTTACAATTTGATGCT-TTGTGAAGTTCTCGTGT
1 AGTATAAAGTTTTAAGAGGTT-AAATGGAAATTTACAATGTGATG-TATAGTGAAGTTCTCGTGT
* * * * *
56607683 CTTATGATTCTTTTTAATTTCA-TTTTAATTATTGAAACTCGAACTTTGAGGTGAAGTTCGTTAC
64 TTTATGA-TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTAC
56607747 -GAAATTAAAGATAA
128 AG-AATTAAAGATAA
* * * * * * *
56607761 AGTATAAAGTTTTAAGAGGTTAAATTGGAAATATACCATGTAATGCATAG-CAGACTTCTCATGT
1 AGTATAAAGTTTTAAGAGGTTAAA-TGGAAATTTACAATGTGATGTATAGTGA-AGTTCTCGTGT
* * * * * * * *
56607825 TTTCTGATTTTTTTAATTTCGTTTTTAAATATTAAAATTTGAATTTCGAGGCGAAGTCGGTTACA
64 TTTATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACA
*
56607890 GAATCAAAGATAA
129 GAATTAAAGATAA
* * * * *
56607903 AGTATAAACTTTTAAAATGTTAAAATGGAAATTTACAATGTGATGTAGAGCGAAGTT
1 AGTATAAAGTTTTAAGAGGTT-AAATGGAAATTTACAATGTGATGTATAGTGAAGTT
56607960 GTAGCAGTTC
Statistics
Matches: 512, Mismatches: 76, Indels: 54
0.80 0.12 0.08
Matches are distributed among these distances:
130 1 0.00
131 107 0.21
132 5 0.01
133 1 0.00
141 21 0.04
142 243 0.47
143 132 0.26
144 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.39
Consensus pattern (141 bp):
AGTATAAAGTTTTAAGAGGTTAAATGGAAATTTACAATGTGATGTATAGTGAAGTTCTCGTGTTT
TATGATCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTTTGAGGCGAAGTCCGTTACAGA
ATTAAAGATAA
Found at i:56607511 original size:131 final size:131
Alignment explanation
Indices: 56607291--56607699 Score: 374
Period size: 131 Copynumber: 3.0 Consensus size: 131
56607281 AATTTCATTC
* * *** *
56607291 TTAAATATTAAAATTTGAATTTTGAGGCAAAGTTGGTTACAGAATTAAAGATAAAGTATAAATTT
1 TTAAATATTAAAACTCGAATTTTGAGGCAAAGACCGTTACAGAATTAAAGATAAAGTATAAAATT
*
56607356 TTAAGAGGTTAAGATGAAAATTTACAATGTGATG-TATAAACAAGTTCTCGTGTTTTATGATTCT
66 TTAAGAGGTTAAGATGAAAATTTACAATGTGATGCT-TAAACAAGTTCTCGTGTCTTATGATTCT
56607420 TT
130 TT
* *
56607422 TTAAATATTGAAACTCGAATTTTGAGGCATAGACCGTTACAGAATTAAAGATAAAGTATAAAATT
1 TTAAATATTAAAACTCGAATTTTGAGGCAAAGACCGTTACAGAATTAAAGATAAAGTATAAAATT
** ***
56607487 TTAAGAGGTTACA-ATGGTAATTTACAATGTGATGCTTAGTGAAGTTCTCGTGTCTTATGATTCT
66 TTAAGAGGTTA-AGATGAAAATTTACAATGTGATGCTTAAACAAGTTCTCGTGTCTTATG-----
56607551 TTTTAATTTCATTT
125 -----A-TTC-TTT
* * * * * * * * * *
56607565 TTAAATATTGAAACTCAAACTTTAAGGCGAAGTCCATTGC-GAAATTAAAGATAAAATATAAAGT
1 TTAAATATTAAAACTCGAATTTTGAGGCAAAGACCGTTACAG-AATTAAAGATAAAGTATAAAAT
* ** * ****
56607629 TTTAAGAGGTTAAAATGGTAATTTACAATTTGATGCTTTGTGAAGTTCTCGTGTCTTATGATTCT
65 TTTAAGAGGTTAAGATGAAAATTTACAATGTGATGCTTAAACAAGTTCTCGTGTCTTATGATTCT
56607694 TT
130 TT
56607696 TTAA
1 TTAA
56607700 TTTCATTTTA
Statistics
Matches: 236, Mismatches: 26, Indels: 32
0.80 0.09 0.11
Matches are distributed among these distances:
131 113 0.48
132 5 0.02
133 1 0.00
141 1 0.00
142 5 0.02
143 111 0.47
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (131 bp):
TTAAATATTAAAACTCGAATTTTGAGGCAAAGACCGTTACAGAATTAAAGATAAAGTATAAAATT
TTAAGAGGTTAAGATGAAAATTTACAATGTGATGCTTAAACAAGTTCTCGTGTCTTATGATTCTT
T
Found at i:56613647 original size:27 final size:29
Alignment explanation
Indices: 56613617--56613702 Score: 86
Period size: 29 Copynumber: 3.0 Consensus size: 29
56613607 AACGCAAGAG
*
56613617 TATATA-GTGAATC-CGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
56613644 TATATATTTTCAGCTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* ** *
56613673 TATATATTTTCAGTTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
56613702 T
1 T
56613703 GTACAATTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
27 6 0.12
28 3 0.06
29 43 0.83
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (29 bp):
TATATATGTGAAGCTCGCACACTTAGTGC
Found at i:56613662 original size:29 final size:29
Alignment explanation
Indices: 56613630--56613702 Score: 137
Period size: 29 Copynumber: 2.5 Consensus size: 29
56613620 ATAGTGAATC
56613630 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
*
56613659 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
56613688 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56613703 GTACAATTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:56621147 original size:27 final size:29
Alignment explanation
Indices: 56621117--56621232 Score: 110
Period size: 29 Copynumber: 4.0 Consensus size: 29
56621107 AACGCAAGAG
*
56621117 TATATA-GTGAATC-CGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
56621144 TATATATTTTCAGCTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
* **
56621173 TATATAATTTTCAGCTCGCACACTTAGTGC
1 TATAT-ATGTGAAGCTCGCACACTTAGTGC
* ** *
56621203 TATATATTTTCAGTTCGCACACTTAGTGC
1 TATATATGTGAAGCTCGCACACTTAGTGC
56621232 T
1 T
56621233 GTACAATTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
27 6 0.07
28 3 0.04
29 43 0.53
30 29 0.36
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (29 bp):
TATATATGTGAAGCTCGCACACTTAGTGC
Found at i:56621185 original size:30 final size:29
Alignment explanation
Indices: 56621130--56621232 Score: 188
Period size: 29 Copynumber: 3.5 Consensus size: 29
56621120 ATAGTGAATC
56621130 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
56621159 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
*
56621189 CGCACACTTAGTGCTATATATTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
56621218 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
56621233 GTACAATTTT
Statistics
Matches: 72, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
29 43 0.60
30 29 0.40
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:56621206 original size:59 final size:60
Alignment explanation
Indices: 56621129--56621262 Score: 207
Period size: 59 Copynumber: 2.2 Consensus size: 60
56621119 TATAGTGAAT
* * *
56621129 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * *
56621188 TCGCACACTTAGTGCTATATATTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
56621248 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
56621263 CAATCTTGTC
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
59 47 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:56622545 original size:71 final size:69
Alignment explanation
Indices: 56622351--56622614 Score: 332
Period size: 71 Copynumber: 3.7 Consensus size: 69
56622341 GAGTTAAGCC
* *
56622351 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
56622416 GAGGTAT
63 GAGGTAT
* * ** * *
56622423 TTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTAATTTTTGT-TTTAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCGGGGCACGCTG
56622487 AGGTAT
64 AGGTAT
56622493 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTT--AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
56622558 AGGTAT
64 AGGTAT
* * ** * *
56622564 TTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
56622615 TTTAATTTTT
Statistics
Matches: 167, Mismatches: 20, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
69 35 0.21
70 56 0.34
71 60 0.36
72 16 0.10
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTTTAATTTTTGTTTTAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAG
GTAT
Found at i:56622659 original size:122 final size:123
Alignment explanation
Indices: 56622493--56622738 Score: 397
Period size: 122 Copynumber: 2.0 Consensus size: 123
56622483 GTTGAGGTAT
56622493 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* * *
56622558 AGGTATTTTTAGTTTATGT-TTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATTTATGTGTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
56622614 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * *
56622679 GAGGTATTTTCAATTTTTGTGTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATTTATGTGTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
56622738 T
1 T
56622739 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
121 12 0.11
122 67 0.59
123 7 0.06
124 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (123 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATTTATGTGTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Done.