Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 193 of 328
Found at i:57458592 original size:38 final size:37
Alignment explanation
Indices: 57458518--57458592 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
57458508 TATAATATTC
*
57458518 TATGATTTTTATATGATTTTACAATTTTTTATAATTTT
1 TATGATTTTTATAT-ATTTTACAATTTTTTAAAATTTT
* *
57458556 TATGATTTTTATA-ATTTTTATATTTTTATTAAAATTT
1 TATGATTTTTATATA-TTTTACAATTTT-TTAAAATTT
57458593 AATCATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
36 1 0.03
37 10 0.31
38 21 0.66
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (37 bp):
TATGATTTTTATATATTTTACAATTTTTTAAAATTTT
Found at i:57458864 original size:90 final size:88
Alignment explanation
Indices: 57458687--57458940 Score: 271
Period size: 90 Copynumber: 2.8 Consensus size: 88
57458677 ATTAATGGCG
* * ** * * * *
57458687 GTTCAAGTACCTAATTGAGTGCAAAAAAAGGCAAGGGTTTAATTGCTTTTTAT-GAAAAAGTTTG
1 GTTCAAGTACCCAATTGAGT-AAAAAAAAAACAAGGGCTTAATTGCTTTTTTTAAAAAAAATTTG
*
57458751 AGGGCCTTTTGATGCATTTTGAAA
65 AGGGCCTTTTGATGCATTATGAAA
*
57458775 GTTCAAGTACCCAATTGAATATAAAAAAAAACAAGGGCTTAATTGCTTTTTTTAAAAAAAATTTG
1 GTTCAAGTACCCAATTGAGTA-AAAAAAAAACAAGGGCTTAATTGCTTTTTTTAAAAAAAATTTG
* *
57458840 AAGGTCTTTTTGATGCATTATGAAA
65 -AGGGCCTTTTGATGCATTATGAAA
* * * *
57458865 ATTCAAGTACCCAAATGAGTGAAAAAAAATAAC-AGAGGCTTAATTACTTTATTTT-AAAAAAGT
1 GTTCAAGTACCCAATTGAGT-AAAAAAAA-AACAAG-GGCTTAATTGCTTT-TTTTAAAAAAAAT
*
57458928 TTGAGGGCTTTTT
62 TTGAGGGCCTTTT
57458941 ATACTATTAA
Statistics
Matches: 141, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
88 45 0.32
89 9 0.06
90 56 0.40
91 27 0.19
92 4 0.03
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (88 bp):
GTTCAAGTACCCAATTGAGTAAAAAAAAAACAAGGGCTTAATTGCTTTTTTTAAAAAAAATTTGA
GGGCCTTTTGATGCATTATGAAA
Found at i:57458971 original size:2 final size:2
Alignment explanation
Indices: 57458964--57458992 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
57458954 TATAAAAATG
57458964 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
57458993 CATGTTTACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:57460393 original size:16 final size:16
Alignment explanation
Indices: 57460348--57460394 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
57460338 GCGTAGTTGG
*
57460348 CTGTAATGGAATAAAA
1 CTGTAATGGAATAGAA
* **
57460364 CTGTAATTGAATAGCT
1 CTGTAATGGAATAGAA
57460380 CTGTAATGGAATAGA
1 CTGTAATGGAATAGA
57460395 GTTATAATTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:57460403 original size:32 final size:31
Alignment explanation
Indices: 57460348--57460407 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
57460338 GCGTAGTTGG
*
57460348 CTGTAATGGAATAAAACTGTAATTGAATAGCT
1 CTGTAATGGAATAAAACTATAATT-AATAGCT
* **
57460380 CTGTAATGGAATAGAGTTATAATTAATA
1 CTGTAATGGAATAAAACTATAATTAATA
57460408 ATTCAACTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 4 0.17
32 20 0.83
ACGTcount: A:0.42, C:0.07, G:0.18, T:0.33
Consensus pattern (31 bp):
CTGTAATGGAATAAAACTATAATTAATAGCT
Found at i:57460699 original size:58 final size:58
Alignment explanation
Indices: 57460594--57460704 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
57460584 ATTACTAAAA
* *
57460594 ATAATTTAATAAATATAATAAATAATTTAACCATATTCTAACATAATTATTATTAATT
1 ATAATTTAATAAATATAATAAATAATTTAACAAAATTCTAACATAATTATTATTAATT
* * * **
57460652 ATAATTTAATAAA-ATGATATATAATTTAATAAAATTCTTAATGTAATTATTAT
1 ATAATTTAATAAATATAATAAATAATTTAACAAAATTC-TAACATAATTATTAT
57460705 ATGAATTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
57 19 0.42
58 26 0.58
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (58 bp):
ATAATTTAATAAATATAATAAATAATTTAACAAAATTCTAACATAATTATTATTAATT
Found at i:57465114 original size:12 final size:12
Alignment explanation
Indices: 57465097--57465123 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
57465087 CAGATTTATG
57465097 CAAAACAATACC
1 CAAAACAATACC
57465109 CAAAACAATACC
1 CAAAACAATACC
57465121 CAA
1 CAA
57465124 TAATTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.59, C:0.33, G:0.00, T:0.07
Consensus pattern (12 bp):
CAAAACAATACC
Found at i:57469874 original size:47 final size:47
Alignment explanation
Indices: 57469819--57470041 Score: 193
Period size: 47 Copynumber: 4.7 Consensus size: 47
57469809 CGAAACTTAT
*
57469819 CCGATGCATGTCCCAGACACGTCTTACACTGGCTAACATCATCGAGG
1 CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGG
* * *
57469866 CCGATGCATGTCCCAGACATGTCTTACACTGGC-ACTCATC-TCTACG
1 CCGATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATCGAGG
* * ** * * *
57469912 CTGATGCCATGTCCTAGACGTGGTCTTACACGGGCTATCATGAT-GTGG
1 CCGATG-CATGTCCCAGAC-ACGTCTTACACTGGCTATCATCATCGAGG
* * ** * * *
57469960 CTGATGCATGTCCCAGACACGTCTTACACTAGCCCTCGTC-TCAATG
1 CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGG
* *
57470006 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCT
1 CCGATG-CATGTCCCAGACA-CGTCTTACACTGGCT
57470042 CTCACATAAC
Statistics
Matches: 138, Mismatches: 30, Indels: 15
0.75 0.16 0.08
Matches are distributed among these distances:
45 1 0.01
46 30 0.22
47 71 0.51
48 34 0.25
49 2 0.01
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (47 bp):
CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGG
Found at i:57469968 original size:94 final size:95
Alignment explanation
Indices: 57469819--57470033 Score: 274
Period size: 94 Copynumber: 2.3 Consensus size: 95
57469809 CGAAACTTAT
* *
57469819 CCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTAACATCATCGAGGCCGATGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACGGGCTAACATCATCGAGGCCGATGCATGTCCCAG
* * *
57469882 ACATGTCTTACACTGGCACTCATCTCTACG
66 ACACGTCTTACACTAGCACTCATCTCAACG
* * * * * * *
57469912 CTGATGCCATGTCCTAGACGTGGTCTTACACGGGCTATCATGAT-GTGGCTGATGCATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACGGGCTAACATCATCGAGGCCGATGCATGTCCCAG
* * *
57469976 ACACGTCTTACACTAGCCCTCGTCTCAATG
66 ACACGTCTTACACTAGCACTCATCTCAACG
57470006 CCGATGCCATGTCCCAGACATGGTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
57470034 TACTGGCTCT
Statistics
Matches: 102, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
93 5 0.05
94 78 0.76
95 19 0.19
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (95 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACGGGCTAACATCATCGAGGCCGATGCATGTCCCAG
ACACGTCTTACACTAGCACTCATCTCAACG
Found at i:57471587 original size:19 final size:19
Alignment explanation
Indices: 57471559--57471595 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
57471549 GATACGTGAA
57471559 ACATCATAAATCTTTTCTC
1 ACATCATAAATCTTTTCTC
*
57471578 ACATCGTAAATCTTTTCT
1 ACATCATAAATCTTTTCT
57471596 AACTCTGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.24, G:0.03, T:0.43
Consensus pattern (19 bp):
ACATCATAAATCTTTTCTC
Found at i:57477321 original size:43 final size:47
Alignment explanation
Indices: 57477273--57477393 Score: 135
Period size: 47 Copynumber: 2.7 Consensus size: 47
57477263 GTGTATACGT
*
57477273 GCTGATGCATGTCCCAGACATGTCTTAC-CTAGC--ACAAAAAT-TA-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAAC-AAAATCGAG
* * * * **
57477316 GCTGATGCATGTCCTAGACACGTCTTGCACTGGCTAACATCATCGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAACAAAATCGAG
57477363 GCTGATGCATGTCCCAGACATGTCTTACACT
1 GCTGATGCATGTCCCAGACATGTCTTACACT
57477394 GGCACTCACC
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
43 25 0.40
44 4 0.06
45 3 0.05
46 3 0.05
47 28 0.44
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCTAACAAAATCGAG
Found at i:57480285 original size:27 final size:28
Alignment explanation
Indices: 57480229--57480298 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
57480219 AAACTTGTAC
57480229 AGCACTAAGTGTGCGAGTTTGATCATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
*
57480257 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATCATAT
57480284 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
57480299 GACTCACTAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATCATAT
Found at i:57480309 original size:27 final size:27
Alignment explanation
Indices: 57480229--57480310 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
57480219 AAACTTGTAC
* *
57480229 AGCACTAAGTGTGCGAGTTTGA-TCATAT
1 AGCACTAAGTGTGCGAG-CTCACT-ATAT
* * *
57480257 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCACTATAT
57480284 AGCACTAAGTGTGCG-GACTCACTATAT
1 AGCACTAAGTGTGCGAG-CTCACTATAT
57480311 GCTTTTGAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.61
28 18 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCACTATAT
Found at i:57489669 original size:45 final size:45
Alignment explanation
Indices: 57489605--57489819 Score: 282
Period size: 45 Copynumber: 4.9 Consensus size: 45
57489595 TGTACAGTAC
*
57489605 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
57489650 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*
57489695 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
57489740 TATTCTGGCC-TCGAGCCTAGCAGG-TGA-AATGCCGGTGA-ATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCT-ATAATGCCGGTGAGAT-AT
** * * *
57489782 -ATTCGGGTTTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
57489820 TTTGATAAAA
Statistics
Matches: 154, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
41 6 0.04
42 24 0.16
43 13 0.08
44 14 0.09
45 97 0.63
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:57499480 original size:55 final size:54
Alignment explanation
Indices: 57499393--57499647 Score: 278
Period size: 55 Copynumber: 4.8 Consensus size: 54
57499383 ATTAGGGTTT
*
57499393 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
57499448 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
57499503 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTCAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
*
57499556 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
57499605 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
57499648 GTACCCGCGT
Statistics
Matches: 172, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
49 40 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 68 0.40
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:57499599 original size:108 final size:110
Alignment explanation
Indices: 57499400--57499600 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
57499390 TTTAAGGATA
*
57499400 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
57499465 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
57499510 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTCA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
57499572 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
57499601 TCAAAAGGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:57502367 original size:48 final size:48
Alignment explanation
Indices: 57502281--57502507 Score: 328
Period size: 48 Copynumber: 4.7 Consensus size: 48
57502271 TCATATCGAC
* * ** * *
57502281 GCCATGTCCCAAACATGGTCGTACATGAAATCACATATCGATGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAAT
* * * *
57502329 GCCATATCCCATACATGGTCTTACGTGGGATCATATATCAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAAT
*
57502377 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAAT
* *
57502425 GCTATGTCCCAGACATGGTCTTACATGGGATCACATATTAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAAT
*
57502473 GCCATGTCCCAGACATGGTCTAACATGGGATCACA
1 GCCATGTCCCAGACATGGTCTTACATGGGATCACA
57502508 ATGCCATAGC
Statistics
Matches: 160, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 160 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAAT
Found at i:57502528 original size:37 final size:37
Alignment explanation
Indices: 57502469--57502567 Score: 94
Period size: 37 Copynumber: 2.7 Consensus size: 37
57502459 ATATTAATGC
*
57502469 CAATGCCAT-GTCCCAGAC-ATGGTCTAACATGGGATCA
1 CAATGCCATAG-CCCAG-CTATGGTCTAACATGGCATCA
* * * *
57502506 CAATGCCATAGCCCAGCTATGGTTTTACATGTCATTA
1 CAATGCCATAGCCCAGCTATGGTCTAACATGGCATCA
* * *
57502543 CGATGCTATAGCCTAGCTATGGTCT
1 CAATGCCATAGCCCAGCTATGGTCT
57502568 TGCACGTACT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
36 1 0.02
37 49 0.96
38 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.28
Consensus pattern (37 bp):
CAATGCCATAGCCCAGCTATGGTCTAACATGGCATCA
Found at i:57504418 original size:99 final size:96
Alignment explanation
Indices: 57504306--57504484 Score: 252
Period size: 99 Copynumber: 1.8 Consensus size: 96
57504296 TACGAGATGT
* *
57504306 GTCAGTGTAAGACCATGTCCGGGACATGGCATCGAC-ACAGATATGTGAGAACTAGTGTAAGACC
1 GTCAGTGTAAGACCATGTCCGGGACATGGCATCGACTACAGATA--TGAG--CCAGTGTAAGACA
*
57504370 ATGTCTGGGACATGGCGTCAGCCTCGATGACGATA
62 ATGTCTAGGACATGGCGTCAGCCTCGATGACGATA
* * **
57504405 GTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATATGAGCCAGTGTAAGACAATGT
1 GTCAGTGTAAGACCATGTCCGGGACATGGCATCGACTACAGATATGAGCCAGTGTAAGACAATGT
57504470 CTAGGACATGGCGTC
66 CTAGGACATGGCGTC
57504485 GACATTCTAC
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
96 29 0.40
98 4 0.06
99 34 0.47
100 5 0.07
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (96 bp):
GTCAGTGTAAGACCATGTCCGGGACATGGCATCGACTACAGATATGAGCCAGTGTAAGACAATGT
CTAGGACATGGCGTCAGCCTCGATGACGATA
Found at i:57508686 original size:18 final size:18
Alignment explanation
Indices: 57508663--57508708 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
57508653 ATGCCTCAAT
57508663 TTTTGAAAGTGTTGATGG
1 TTTTGAAAGTGTTGATGG
57508681 TTTTGAAAGTGTTGATGG
1 TTTTGAAAGTGTTGATGG
57508699 TTTTGAAAGT
1 TTTTGAAAGT
57508709 TTCCATTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (18 bp):
TTTTGAAAGTGTTGATGG
Found at i:57513995 original size:20 final size:20
Alignment explanation
Indices: 57513970--57514014 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
57513960 AGGGACTAAA
* *
57513970 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
57513990 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
57514010 ATGAA
1 ATGAA
57514015 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:57521809 original size:39 final size:39
Alignment explanation
Indices: 57521773--57522174 Score: 248
Period size: 39 Copynumber: 10.2 Consensus size: 39
57521763 ACTTTAAGCT
* *
57521773 CGGATATAGTACCAGTATGAAGCCTGCGGACCTTAAGTC
1 CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
* * * *
57521812 CGAATATAGTACCAACACGAAGCCTACGGATCTTAAGTC
1 CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
* * * * * *
57521851 CGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCC
1 CGGATATAGTACCAGCACGAAGCCTGC-GGACCTTAAGTC
* * * * * * * *
57521891 CAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCC
1 CGGATATAGTACCAGCACGAAGCCTG-CGGACCTTAAGTC
* * * ***
57521931 CGGATACAATTCCAGCACGAAGCCTATAGACCTTAAGTC
1 CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
* * * * * * * * *
57521970 CGAATACAATTCCAGCACAAAGTCTGCGGGTCTTTAAGCC
1 CGGATATAGTACCAGCACGAAGCCTGC-GGACCTTAAGTC
* * * * * * *
57522010 CGGATATAATTCCAGCA-TATAGCCTACGGGTCTTTAAGCC
1 CGGATATAGTACCAGCACGA-AGCCTGC-GGACCTTAAGTC
* * * * *
57522050 CGGATACAATTCCAGCACGAAGCTTGCAGACCTTAAGTC
1 CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
* * * *
57522089 CGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTC
1 CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
* * * * *
57522128 TGGATACAATTCCAGCACGAAGCCTGCAGACCTTAAGTC
1 CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
57522167 CGGATATA
1 CGGATATA
57522175 CATCAAATAT
Statistics
Matches: 305, Mismatches: 53, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
39 173 0.57
40 131 0.43
41 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (39 bp):
CGGATATAGTACCAGCACGAAGCCTGCGGACCTTAAGTC
Found at i:57521897 original size:40 final size:40
Alignment explanation
Indices: 57521827--57522154 Score: 369
Period size: 40 Copynumber: 8.3 Consensus size: 40
57521817 ATAGTACCAA
* * *
57521827 CACGAAGCCTACGGATC-TTAAGTCCGGATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
*
57521866 CACGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
*
57521906 CACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
*** * * * *
57521946 CACGAAGCCT-ATAGACCTTAAGTCCGAATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
* * *
57521985 CACAAAGTCTGCGGGTCTTTAAGCCCGGATATAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
* *
57522025 CA-TATAGCCTACGGGTCTTTAAGCCCGGATACAATTCCAG
1 CACGA-AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
* * * * *
57522065 CACGAAGCTTGC-AGACCTTAAGTCCGGATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
* * * * *
57522104 CACGAAGCTTGC-GGACCTTAAGTCTGGATACAATTCCAG
1 CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
57522143 CACGAAGCCTGC
1 CACGAAGCCTGC
57522155 AGACCTTAAG
Statistics
Matches: 248, Mismatches: 37, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
39 117 0.47
40 130 0.52
41 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
CACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
Found at i:57521977 original size:119 final size:119
Alignment explanation
Indices: 57521827--57522154 Score: 471
Period size: 119 Copynumber: 2.8 Consensus size: 119
57521817 ATAGTACCAA
* *
57521827 CACGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCC
1 CACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCC
* *
57521892 AGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAG
66 GGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
* * * *
57521946 CACGAAGCCTATAGACCTTAAGTCCGAATACAATTCCAGCACAAAGTCTGCGGGTCTTTAAGCCC
1 CACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCC
* * *
57522011 GGATATAATTCCAGCA-TATAGCCTACGGGTCTTTAAGCCCGGATACAATTCCAG
66 GGATACAATTCCAGCACGA-AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
* * * * * * *
57522065 CACGAAGCTTGCAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGC-GGACCTTAAGTCT
1 CACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCC
57522129 GGATACAATTCCAGCACGAAGCCTGC
66 GGATACAATTCCAGCACGAAGCCTGC
57522155 AGACCTTAAG
Statistics
Matches: 182, Mismatches: 25, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
118 31 0.17
119 151 0.83
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (119 bp):
CACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCC
GGATACAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCGGATACAATTCCAG
Found at i:57522176 original size:119 final size:118
Alignment explanation
Indices: 57521764--57522172 Score: 446
Period size: 119 Copynumber: 3.5 Consensus size: 118
57521754 TCCTATGGGA
* * * * * * * * * * * *
57521764 CTTTAAGCTCGGATATAGTACCAGTATGAAGCCTGCGGACCTTAAGTCCGAATATAGTACCAACA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATACAATTCCAGCA
* * *
57521829 CGAAGCCTACGGATCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGGT
66 CGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGGT
* * * *
57521882 CTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGC
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG-CGGACCTTAAGCCCGGATACAATTCCAGC
* * *
57521947 ACGAAGCCTATAGACCTTAAGTCCGAATACAATTCCAGCACAAAG-TCTGCGGGT
65 ACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCT-TGCGGGT
* * * * *
57522001 CTTTAAGCCCGGATATAATTCCAGCA-TATAGCCTACGGGTCTTTAAGCCCGGATACAATTCCAG
1 CTTTAAGCCCGGATACAATTCCAGCACGA-AGCCTGC-GGACCTTAAGCCCGGATACAATTCCAG
* * *
57522065 CACGAAGCTTGCAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGC-GGA
64 CACGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGGT
* * * * *
57522119 CCTTAAGTCTGGATACAATTCCAGCACGAAGCCTGCAGACCTTAAGTCCGGATA
1 CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATA
57522173 TACATCAAAT
Statistics
Matches: 242, Mismatches: 43, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
117 14 0.06
118 59 0.24
119 168 0.69
120 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (118 bp):
CTTTAAGCCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGATACAATTCCAGCA
CGAAGCCTACAGACCTTAAGTCCGGATACAATTCCAGCACGAAGCTTGCGGGT
Found at i:57524332 original size:27 final size:26
Alignment explanation
Indices: 57524296--57524461 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 26
57524286 AGCATGGCTG
* *
57524296 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
57524322 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
57524350 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
57524377 CCAGATCAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
57524404 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
57524431 TCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
57524458 CCAG
1 CCAG
57524462 GACGCTTCCT
Statistics
Matches: 122, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.06
27 97 0.80
28 18 0.15
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:57524360 original size:54 final size:54
Alignment explanation
Indices: 57524296--57524461 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
57524286 AGCATGGCTG
* * *
57524296 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
*
57524350 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * * *
57524404 CCAGAACAGATATATGTGGCAGAGCCATCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
57524458 CCAG
1 CCAG
57524462 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
54 84 0.82
55 18 0.18
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:57524413 original size:81 final size:81
Alignment explanation
Indices: 57524296--57524461 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
57524286 AGCATGGCTG
* * *
57524296 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATA-ATCGTGGTAGAGCCACCAGAACAGA
1 CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATATAT-GTGGCAGAGCCACCAGAACAGA
57524360 TATATGTGGCAGAGCCA
65 TATATGTGGCAGAGCCA
* * * *
57524377 CCAGATCAAATAATCGTGGCAGAGCCACCAGA-ACAGATATATGTGGCAGAGCCATCAGATCAGA
1 CCAGAACAAATAAT-GTGACAGAGCCACCAGATACAGATATATGTGGCAGAGCCACCAGAACAGA
* *
57524441 TATTTGTGGCATAGCCA
65 TATATGTGGCAGAGCCA
57524458 CCAG
1 CCAG
57524462 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 57 0.77
82 17 0.23
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.17
Consensus pattern (81 bp):
CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATATATGTGGCAGAGCCACCAGAACAGAT
ATATGTGGCAGAGCCA
Found at i:57532084 original size:27 final size:26
Alignment explanation
Indices: 57532048--57532213 Score: 188
Period size: 27 Copynumber: 6.2 Consensus size: 26
57532038 AGCATGGCTG
* *
57532048 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
57532074 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
57532102 CCAGAACAGATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
57532129 CCAGATCAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
57532156 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * * *
57532183 TCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
57532210 CCAG
1 CCAG
57532214 GACGCTTCCT
Statistics
Matches: 122, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.06
27 97 0.80
28 18 0.15
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:57532112 original size:54 final size:54
Alignment explanation
Indices: 57532048--57532213 Score: 235
Period size: 54 Copynumber: 3.1 Consensus size: 54
57532038 AGCATGGCTG
* * *
57532048 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* *
57532102 CCAGAACAGATATATGTGGTAGAGCCACCAGATCAAATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* * * *
57532156 CCAGAACAGATATATGTGGCAGAGCCATCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
57532210 CCAG
1 CCAG
57532214 GACGCTTCCT
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 83 0.83
55 17 0.17
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:57532165 original size:81 final size:81
Alignment explanation
Indices: 57532048--57532213 Score: 210
Period size: 81 Copynumber: 2.0 Consensus size: 81
57532038 AGCATGGCTG
* * *
57532048 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATA-ATCGTGGTAGAGCCACCAGAACAGA
1 CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATATAT-GTGGCAGAGCCACCAGAACAGA
*
57532112 TATATGTGGTAGAGCCA
65 TATATGTGGCAGAGCCA
* * * *
57532129 CCAGATCAAATAATCGTGGCAGAGCCACCAGA-ACAGATATATGTGGCAGAGCCATCAGATCAGA
1 CCAGAACAAATAAT-GTGACAGAGCCACCAGATACAGATATATGTGGCAGAGCCACCAGAACAGA
* *
57532193 TATTTGTGGCATAGCCA
65 TATATGTGGCAGAGCCA
57532210 CCAG
1 CCAG
57532214 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
81 56 0.77
82 17 0.23
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (81 bp):
CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATATATGTGGCAGAGCCACCAGAACAGAT
ATATGTGGCAGAGCCA
Found at i:57538037 original size:45 final size:44
Alignment explanation
Indices: 57537981--57538148 Score: 162
Period size: 45 Copynumber: 3.6 Consensus size: 44
57537971 GATAGCTTCG
*
57537981 GCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATA
1 GCTACACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATA
*
57538025 GCTATCACTTATCTGATCAAGGAAATGTGAAAGTGAAAAGTGATA
1 GCTA-CACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATA
* *
57538070 GCTTCGGCTACACTTATCTGATCAATGACAAA-TGACAAGTGAAAAGTGGTA
1 ------GCTACACTTATCTGATCAAGGA-AAAGTGA-AAGTGAAAAGTGATA
* *
57538121 GCTTCAGC-TACCTGATC-AGTGAAAAGTG
1 GCTACA-CTTATCTGATCAAG-GAAAAGTG
57538149 GTAGCTCCAG
Statistics
Matches: 104, Mismatches: 8, Indels: 23
0.77 0.06 0.17
Matches are distributed among these distances:
44 8 0.08
45 55 0.53
46 1 0.01
50 20 0.19
51 20 0.19
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.26
Consensus pattern (44 bp):
GCTACACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATA
Found at i:57538136 original size:95 final size:95
Alignment explanation
Indices: 57537960--57538138 Score: 265
Period size: 95 Copynumber: 1.9 Consensus size: 95
57537950 CCATGGCAAC
* *
57537960 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGATAAGTGATA
1 AAGTGAAAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATA
*
57538025 GCTATCACTTATCTGATCAAGGAAATGTGA
66 GCTATCACTTACCTGATCAAGGAAATGTGA
* *
57538055 AAGTGAAAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAA-TGACAAGTGAAAAGTGG
1 AAGTGAAAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTGA-AAGTGAAAAGTGA
57538119 TAGCT-TCAGC-TACCTGATCA
64 TAGCTATCA-CTTACCTGATCA
57538139 GTGAAAAGTG
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
95 56 0.74
96 20 0.26
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.26
Consensus pattern (95 bp):
AAGTGAAAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGAAAAGTGAAAGTGAAAAGTGATA
GCTATCACTTACCTGATCAAGGAAATGTGA
Found at i:57538145 original size:31 final size:31
Alignment explanation
Indices: 57538107--57538224 Score: 166
Period size: 31 Copynumber: 3.8 Consensus size: 31
57538097 ACAAATGACA
57538107 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
*
57538138 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
* * *
57538169 GGTGAAAAGTGGTAG-TACTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-AGCTACCTGATC
* *
57538200 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCAGCTAC
57538225 AAGTGACAAG
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
30 2 0.03
31 74 0.95
32 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
Found at i:57538382 original size:48 final size:49
Alignment explanation
Indices: 57538324--57538422 Score: 166
Period size: 49 Copynumber: 2.0 Consensus size: 49
57538314 CCATCAGTGA
57538324 GATATGTGATT-CATGTAAGACCATAGCTGGGCTATGGCATCGA-TATGT
1 GATATGTGATTACATGTAAGACCATAGCTGGGCTATGGCATC-ATTATGT
*
57538372 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCATTATGT
1 GATATGTGATTACATGTAAGACCATAGCTGGGCTATGGCATCATTATGT
57538421 GA
1 GA
57538423 AGATGTGTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
48 12 0.25
49 36 0.75
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (49 bp):
GATATGTGATTACATGTAAGACCATAGCTGGGCTATGGCATCATTATGT
Found at i:57540978 original size:15 final size:15
Alignment explanation
Indices: 57540958--57541011 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
57540948 TATCGTATCT
57540958 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
57540973 TGGGTTT-TTCTA-TC
1 TGGGTTTCTT-TATTC
*
57540987 TTGGATTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
57541003 -GGTTTTCTT
1 TGGGTTTCTT
57541012 GTTATCTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 12 0.36
15 17 0.52
16 4 0.12
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:57543697 original size:50 final size:51
Alignment explanation
Indices: 57543620--57543748 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
57543610 GACCATGGCA
57543620 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
*
57543671 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
57543721 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
57543749 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 45 0.62
51 27 0.38
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:57543762 original size:31 final size:31
Alignment explanation
Indices: 57543724--57543872 Score: 219
Period size: 31 Copynumber: 4.8 Consensus size: 31
57543714 ACAAATGACA
*
57543724 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
57543755 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
57543786 AGTGAAAAGTAGTATCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
57543817 AGTGAAAAGTAGTAG-TATCGACTACCTGATC
1 AGTGAAAAGTGGTAGCT-TCGGCTACCTGATC
*
57543848 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
57543873 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 104 0.98
32 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:57544043 original size:49 final size:48
Alignment explanation
Indices: 57543971--57544101 Score: 184
Period size: 49 Copynumber: 2.8 Consensus size: 48
57543961 GCATCAGTGA
* *
57543971 GATATGTGATTCATGTAAGACCATAGCTGGGCTATGGCATAGATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATAGATATAT
*
57544019 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATAGATATAT
57544068 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTATGGCAT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCAT
57544102 CATTATGTGA
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
42 28 0.35
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.15
49 36 0.46
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATAGATATAT
Found at i:57544144 original size:42 final size:42
Alignment explanation
Indices: 57544032--57544129 Score: 162
Period size: 42 Copynumber: 2.3 Consensus size: 42
57544022 ATGTGATTAC
*
57544032 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
*
57544074 GTGTAAGACCATAGCTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAAGAT
57544116 GTGTAAGACCATAG
1 GTGTAAGACCATAG
57544130 TTGAACTCTA
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 52 0.98
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATATATGAAGAT
Found at i:57546351 original size:28 final size:27
Alignment explanation
Indices: 57546288--57546357 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
57546278 ATAGTGAGTC
57546288 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57546315 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
57546343 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57546358 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57555397 original size:40 final size:39
Alignment explanation
Indices: 57555232--57555415 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57555222 AAATTGAATG
* * *
57555232 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57555272 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57555312 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57555352 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57555391 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57555416 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57555440 original size:80 final size:81
Alignment explanation
Indices: 57555272--57555460 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57555262 GCTGGAAATT
* * * *
57555272 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57555337 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57555353 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57555416 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57555432 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57555461 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57557454 original size:17 final size:16
Alignment explanation
Indices: 57557428--57557462 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
57557418 TAAAGCCATG
57557428 ACAAATAGATACCTTT
1 ACAAATAGATACCTTT
57557444 ACAATATAGATACCTTT
1 ACAA-ATAGATACCTTT
57557461 AC
1 AC
57557463 TTCAGCACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (16 bp):
ACAAATAGATACCTTT
Found at i:57561457 original size:25 final size:24
Alignment explanation
Indices: 57561421--57561473 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
57561411 CACAAACGCA
*
57561421 GCTCTTTATGAG-TGTCCTGATATAG
1 GCTCTTTATGAGCT-TCCTGACAT-G
57561446 GCTCTTCT-TGAGCTTCCTGACATG
1 GCTCTT-TATGAGCTTCCTGACATG
57561470 GCTC
1 GCTC
57561474 GCTTGAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 5 0.20
25 18 0.72
26 2 0.08
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.38
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGACATG
Found at i:57565784 original size:28 final size:27
Alignment explanation
Indices: 57565721--57565790 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
57565711 ATAGTGAGTC
57565721 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57565748 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
57565776 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57565791 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57572434 original size:20 final size:20
Alignment explanation
Indices: 57572411--57572452 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
57572401 TGAGTTCTAC
57572411 AACTCGAAAATCAGTTTCGT
1 AACTCGAAAATCAGTTTCGT
57572431 AACTCGAAAATCAGTTTCGT
1 AACTCGAAAATCAGTTTCGT
57572451 AA
1 AA
57572453 TTTTTCCCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (20 bp):
AACTCGAAAATCAGTTTCGT
Found at i:57573818 original size:28 final size:27
Alignment explanation
Indices: 57573755--57573824 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
57573745 ATAGTGAGTC
57573755 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
57573782 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
57573810 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
57573825 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:57580121 original size:32 final size:32
Alignment explanation
Indices: 57580042--57580124 Score: 130
Period size: 32 Copynumber: 2.6 Consensus size: 32
57580032 TGATATTGAA
* * *
57580042 ATGGGCTAGGCCCAACTGATACTGGTTCTGAT
1 ATGGGCTAGGCCCAATTGATACTGATTCTGAG
*
57580074 ATGGGCTAGGCCCAATTGATATTGATTCTGAG
1 ATGGGCTAGGCCCAATTGATACTGATTCTGAG
57580106 ATGGGCTAGGCCCAATTGA
1 ATGGGCTAGGCCCAATTGA
57580125 GACTATGATA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (32 bp):
ATGGGCTAGGCCCAATTGATACTGATTCTGAG
Found at i:57580819 original size:27 final size:27
Alignment explanation
Indices: 57580781--57580857 Score: 154
Period size: 27 Copynumber: 2.9 Consensus size: 27
57580771 ACACTTAAAC
57580781 GTTTGCTTGTCCTCAAGCAAAATTCGT
1 GTTTGCTTGTCCTCAAGCAAAATTCGT
57580808 GTTTGCTTGTCCTCAAGCAAAATTCGT
1 GTTTGCTTGTCCTCAAGCAAAATTCGT
57580835 GTTTGCTTGTCCTCAAGCAAAAT
1 GTTTGCTTGTCCTCAAGCAAAAT
57580858 CCTCAACTCA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.36
Consensus pattern (27 bp):
GTTTGCTTGTCCTCAAGCAAAATTCGT
Found at i:57582953 original size:37 final size:39
Alignment explanation
Indices: 57582869--57582958 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 39
57582859 TGAGACTATA
57582869 TGTAAGACCAT-TCTAGGATATGGCATCATTATGAGACTTCG
1 TGTAAGACCATATCTAGGATATGG-A-CA-TATGAGACTTCG
* *
57582910 TGTAAGACCATATCTAGGATATGG-C-TATGAGATTTTG
1 TGTAAGACCATATCTAGGATATGGACATATGAGACTTCG
*
57582947 TTTAAGACCATA
1 TGTAAGACCATA
57582959 GCTGGGCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
37 21 0.47
39 1 0.02
41 11 0.24
42 12 0.27
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (39 bp):
TGTAAGACCATATCTAGGATATGGACATATGAGACTTCG
Found at i:57586436 original size:27 final size:26
Alignment explanation
Indices: 57586381--57586490 Score: 121
Period size: 27 Copynumber: 4.0 Consensus size: 26
57586371 AAGCGTCCTA
* *
57586381 GTGGCTATGCCACAAATTATCTGATCTG
1 GTGGCTCTGCCAC--ATTATCTGTTCTG
*
57586409 GTGGCTCTACCACATATATCTGTTCTG
1 GTGGCTCTGCCACAT-TATCTGTTCTG
57586436 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTGT-TCTG
* * *
57586464 GTGACTCCGTCACATTATCTGTTCTG
1 GTGGCTCTGCCACATTATCTGTTCTG
57586490 G
1 G
57586491 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
26 7 0.10
27 38 0.53
28 27 0.38
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:57586465 original size:55 final size:54
Alignment explanation
Indices: 57586381--57586490 Score: 141
Period size: 55 Copynumber: 2.0 Consensus size: 54
57586371 AAGCGTCCTA
* *
57586381 GTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTG
1 GTGGCTATGCCACAAATTATCTGATCTGGTGACTCCACCACAT-TATCTGTTCTG
* * **
57586436 GTGGCTCTGCCAC-GATTATCTGTATCTGGTGACTCCGTCACATTATCTGTTCTG
1 GTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCCACCACATTATCTGTTCTG
57586490 G
1 G
57586491 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
54 20 0.42
55 28 0.58
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (54 bp):
GTGGCTATGCCACAAATTATCTGATCTGGTGACTCCACCACATTATCTGTTCTG
Found at i:57594018 original size:27 final size:26
Alignment explanation
Indices: 57593960--57594072 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
57593950 AGGAAGCGTC
*
57593960 CTGGTGGCTCTGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
57593988 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
57594015 CTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
57594043 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
57594069 CTGG
1 CTGG
57594073 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
26 7 0.09
27 37 0.48
28 33 0.43
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:57594045 original size:55 final size:54
Alignment explanation
Indices: 57593960--57594072 Score: 165
Period size: 55 Copynumber: 2.1 Consensus size: 54
57593950 AGGAAGCGTC
*
57593960 CTGGTGGCTCTGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * *
57594015 CTGGTGGCTCTGCCAC-GATTATTTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
57594069 CTGG
1 CTGG
57594073 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 19 0.36
55 34 0.64
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:57595795 original size:14 final size:14
Alignment explanation
Indices: 57595771--57595824 Score: 60
Period size: 14 Copynumber: 4.0 Consensus size: 14
57595761 TAACATAAAC
57595771 ATAATAGTAAAATAA
1 ATAATA-TAAAATAA
57595786 ATAATATAAAATAA
1 ATAATATAAAATAA
* *
57595800 ATAAAAT-AACT-A
1 ATAATATAAAATAA
57595812 ATAATA-AAAATAA
1 ATAATATAAAATAA
57595825 GAAAAAGGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 9 0.27
13 4 0.12
14 14 0.42
15 6 0.18
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (14 bp):
ATAATATAAAATAA
Found at i:57599644 original size:57 final size:57
Alignment explanation
Indices: 57599548--57599683 Score: 200
Period size: 57 Copynumber: 2.4 Consensus size: 57
57599538 ATCGTATTAC
* *
57599548 AAGATTACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAGAGCTCAATT
1 AAGATAACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAAAGCTCAATT
* * *
57599605 AGGATAACCAGTCCAGGCTAAATCCATTAGGTAATGTATGCTCAAAAAAGCTCAATT
1 AAGATAACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAAAGCTCAATT
* * *
57599662 AAGATCACCAGACTAGGCTAAA
1 AAGATAACCAGTCCAGGCTAAA
57599684 CCTTAATTGT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 70 1.00
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (57 bp):
AAGATAACCAGTCCAGGCTAAATCCATTAAGTAACGTATGCTCAAAAAAGCTCAATT
Found at i:57600952 original size:19 final size:20
Alignment explanation
Indices: 57600921--57600965 Score: 83
Period size: 19 Copynumber: 2.3 Consensus size: 20
57600911 CAGAAGATAA
57600921 TTTCTGAAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
57600941 TTTCTG-AAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
57600960 TTTCTG
1 TTTCTG
57600966 GTGTTTGGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:57603982 original size:5 final size:6
Alignment explanation
Indices: 57603953--57603979 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
57603943 GAAAAGGATG
57603953 GGGGAA GGGGAA GGGGAA GGGGAA GGG
1 GGGGAA GGGGAA GGGGAA GGGGAA GGG
57603980 AAGATCATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.70, T:0.00
Consensus pattern (6 bp):
GGGGAA
Found at i:57615953 original size:47 final size:48
Alignment explanation
Indices: 57615878--57616005 Score: 141
Period size: 47 Copynumber: 2.7 Consensus size: 48
57615868 GTGTAGTCAG
* * * * *
57615878 TGTAAAACCATATCTGGGACATAGCATCGACATTATTATGTGAGCCAA
1 TGTAAGACCATGTCTGAGACATGGCATCGACATCATTATGTGAGCCAA
* * * *
57615926 TGTAAGACCGTGTCTGAG-CATGGCATCGGCATCGTTATGTGAGCCAG
1 TGTAAGACCATGTCTGAGACATGGCATCGACATCATTATGTGAGCCAA
* * *
57615973 TGTGAGACCATGTCTGGGACATGGCATCAACAT
1 TGTAAGACCATGTCTGAGACATGGCATCGACAT
57616006 GAGGTATCAT
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
47 39 0.60
48 26 0.40
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGAGACATGGCATCGACATCATTATGTGAGCCAA
Found at i:57616084 original size:43 final size:42
Alignment explanation
Indices: 57615977--57616085 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 42
57615967 AGCCAGTGTG
* * * *
57615977 AGACCATGTCTGGGACATGGCATCAACATGAGGTATCATGTA
1 AGACTATGTCTGGGATATGGCATCAACATGAGATATCATATA
* * * *
57616019 AGACTATAG-CTGAGTTATTGGCATCAATATGAGATTTCCATATA
1 AGACTAT-GTCTGGGATA-TGGCATCAACATGAGATAT-CATATA
57616063 AGACTATGTCTGGGATATGGCAT
1 AGACTATGTCTGGGATATGGCAT
57616086 TGGTATGATA
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
42 11 0.21
43 24 0.45
44 18 0.34
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
AGACTATGTCTGGGATATGGCATCAACATGAGATATCATATA
Found at i:57617913 original size:20 final size:18
Alignment explanation
Indices: 57617888--57617937 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
57617878 CGAATAGAGG
57617888 ACACGGGCGTGTCCTGAGCC
1 ACACGGGCGTGT-CTGA-CC
** *
57617908 ACACGGGCAAGTGTGACC
1 ACACGGGCGTGTCTGACC
57617926 ACACGGGCGTGT
1 ACACGGGCGTGT
57617938 TACTCCCCAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 12 0.48
19 3 0.12
20 10 0.40
ACGTcount: A:0.20, C:0.30, G:0.36, T:0.14
Consensus pattern (18 bp):
ACACGGGCGTGTCTGACC
Found at i:57626679 original size:13 final size:13
Alignment explanation
Indices: 57626661--57626689 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
57626651 TACAAAAAGA
57626661 TAACTTGTATTAG
1 TAACTTGTATTAG
57626674 TAACTTGTATTAG
1 TAACTTGTATTAG
57626687 TAA
1 TAA
57626690 ATGAACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.07, G:0.14, T:0.45
Consensus pattern (13 bp):
TAACTTGTATTAG
Found at i:57628233 original size:19 final size:20
Alignment explanation
Indices: 57628206--57628243 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
57628196 ACTAGAAAAT
57628206 AGTGGAAATT-TATTTTCTA
1 AGTGGAAATTCTATTTTCTA
*
57628225 AGTGTAAATTCTATTTTCT
1 AGTGGAAATTCTATTTTCT
57628244 GAGAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.29, C:0.08, G:0.13, T:0.50
Consensus pattern (20 bp):
AGTGGAAATTCTATTTTCTA
Found at i:57633839 original size:30 final size:30
Alignment explanation
Indices: 57633799--57633859 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
57633789 AAGAAAGGTA
57633799 CAACTATTCGTTAGTTTGAATTTGGTTACG
1 CAACTATTCGTTAGTTTGAATTTGGTTACG
*
57633829 CAACTGTTCGTTAGTTTGAATTTGGTTACG
1 CAACTATTCGTTAGTTTGAATTTGGTTACG
57633859 C
1 C
57633860 TATGTAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.43
Consensus pattern (30 bp):
CAACTATTCGTTAGTTTGAATTTGGTTACG
Found at i:57636031 original size:23 final size:23
Alignment explanation
Indices: 57636000--57636052 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
57635990 AGGGACATGA
* *
57636000 GCGTTTGCATTGTCTCTACACGG
1 GCGTGTGCATTGTCTCCACACGG
57636023 GCGTGTGCATTGTCTCCACACGG
1 GCGTGTGCATTGTCTCCACACGG
57636046 GCGTGTG
1 GCGTGTG
57636053 AGACATTAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.11, C:0.26, G:0.32, T:0.30
Consensus pattern (23 bp):
GCGTGTGCATTGTCTCCACACGG
Found at i:57638380 original size:47 final size:47
Alignment explanation
Indices: 57638261--57638416 Score: 222
Period size: 47 Copynumber: 3.3 Consensus size: 47
57638251 TACATGATAG
*
57638261 TATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
57638310 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
57638357 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
57638404 TAAATGTGATAAG
1 TATATGTGATAAG
57638417 TCCCGAAGGG
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 54 0.55
49 44 0.45
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:57641339 original size:47 final size:47
Alignment explanation
Indices: 57641270--57641364 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
57641260 AACAGCTCGT
57641270 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57641317 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
57641364 A
1 A
57641365 TACATGTGTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:57641411 original size:48 final size:48
Alignment explanation
Indices: 57641356--57641599 Score: 371
Period size: 48 Copynumber: 5.1 Consensus size: 48
57641346 CGATGTGATG
* *
57641356 AATGTGAAATACATGTGTGATATGTACATGTGATAAAGCCGAATGGCT
1 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
57641404 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
57641452 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * * * * *
57641500 AATGTGAAATATATATGAGATGTGTATATGTCGTAAAGCCGAATGGCG
1 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* * * * *
57641548 AATGTGAAATGCGTATGAGATATGAATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
57641596 AATG
1 AATG
57641600 AGAATGTTGT
Statistics
Matches: 181, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 181 1.00
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.30
Consensus pattern (48 bp):
AATGTGAAATACATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:57641698 original size:37 final size:37
Alignment explanation
Indices: 57641648--57641733 Score: 163
Period size: 37 Copynumber: 2.3 Consensus size: 37
57641638 GGAAATATAT
*
57641648 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
57641685 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
57641722 TCCGGGTAAGAC
1 TCCGGGTAAGAC
57641734 TTCGTAATAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.23
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:57643696 original size:40 final size:40
Alignment explanation
Indices: 57643630--57643861 Score: 367
Period size: 40 Copynumber: 5.8 Consensus size: 40
57643620 AAGAATTGAG
* * *
57643630 AGTGATATATCCAGG-CTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCC-GGACTAAGTTCCGAAGAGCATTCGTGCT
57643670 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
57643710 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* *
57643750 AGTGATGTACCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
57643790 AGTGATGTATCCGGATTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
57643830 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
57643862 ATCATGCTGG
Statistics
Matches: 181, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 2 0.01
40 179 0.99
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:57647236 original size:40 final size:40
Alignment explanation
Indices: 57647180--57647546 Score: 547
Period size: 40 Copynumber: 9.2 Consensus size: 40
57647170 GAGAATTGAG
*
57647180 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
57647220 AGTGATGTATCTGGGCTAAAT-CCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
57647259 AGTGATGTATTCGGGCTAAATCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
57647299 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
57647339 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
57647379 AGTGATGTATCCGGGCTAAATCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
57647419 AGTGATGTATCCGGGCTAAGTTCCGAAAAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
57647459 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * ** * *
57647499 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
1 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
57647539 GGTGATGT
1 AGTGATGT
57647547 GTATTCGGGC
Statistics
Matches: 298, Mismatches: 28, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
39 37 0.12
40 261 0.88
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:57647747 original size:25 final size:25
Alignment explanation
Indices: 57647706--57647757 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
57647696 TGTGTAATAA
57647706 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
57647731 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
57647756 TG
1 TG
57647758 CGAATTCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:57650381 original size:47 final size:47
Alignment explanation
Indices: 57650262--57650417 Score: 231
Period size: 47 Copynumber: 3.3 Consensus size: 47
57650252 TACATGATAG
57650262 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
57650311 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * *
57650358 TATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
57650405 TAAATGTGATAAG
1 TATATGTGATAAG
57650418 TCCCGAAGGG
Statistics
Matches: 99, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 54 0.55
49 45 0.45
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:57662977 original size:32 final size:32
Alignment explanation
Indices: 57662933--57662993 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
57662923 CATCTATTTT
*
57662933 CATTGTTTAACTCTTTGACAACACGAAAAGTC
1 CATTGTTCAACTCTTTGACAACACGAAAAGTC
*
57662965 CATTGTTCAACTCTTTGACAACATGAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAA
57662994 AACCAAAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.31
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAGTC
Found at i:57664074 original size:26 final size:25
Alignment explanation
Indices: 57664031--57664079 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
57664021 TTATATTTAT
* *
57664031 ATTAATTGCTAATAATTTGTAATTTG
1 ATTAATTGATAAGAATTTG-AATTTG
*
57664057 ATTAATTGATAAGCATTTGAATT
1 ATTAATTGATAAGAATTTGAATT
57664080 GTTATATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.47
Consensus pattern (25 bp):
ATTAATTGATAAGAATTTGAATTTG
Found at i:57672897 original size:10 final size:10
Alignment explanation
Indices: 57672882--57672906 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
57672872 CCCAAACTTG
57672882 CAGGTGAAAA
1 CAGGTGAAAA
57672892 CAGGTGAAAA
1 CAGGTGAAAA
57672902 CAGGT
1 CAGGT
57672907 TGATGTAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (10 bp):
CAGGTGAAAA
Found at i:57673801 original size:6 final size:6
Alignment explanation
Indices: 57673782--57673822 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
57673772 TAAACACCTA
*
57673782 TTATTT TTACTTT TTA-TT TTA-TT TTATTT TTATCT TTATTT
1 TTATTT TTA-TTT TTATTT TTATTT TTATTT TTATTT TTATTT
57673823 ATATGTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 10 0.32
6 15 0.48
7 6 0.19
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:57673806 original size:17 final size:17
Alignment explanation
Indices: 57673786--57673822 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
57673776 CACCTATTAT
57673786 TTTTACTTTTTAT-TTTA
1 TTTTA-TTTTTATCTTTA
57673803 TTTTATTTTTATCTTTA
1 TTTTATTTTTATCTTTA
57673820 TTT
1 TTT
57673823 ATATGTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTATTTTTATCTTTA
Found at i:57677820 original size:46 final size:45
Alignment explanation
Indices: 57677768--57677940 Score: 204
Period size: 46 Copynumber: 3.8 Consensus size: 45
57677758 TTTGGGCATC
*
57677768 CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTT
1 CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG-T
* *
57677814 CGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGT
* * * *
57677859 CTGAGCTCGTTGAGTTGAGT-TCGAGTTCACTAATGGATACGAATGCC
1 C-GAACTCGTTGAGTTGAGTCT-GAGTTCACTTATGGATGCGAATG-T
* * * *
57677906 CGAGCTCTTTGATTTGAGTCTGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGG
57677941 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
45 2 0.02
46 106 0.96
47 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (45 bp):
CGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGT
Found at i:57687396 original size:30 final size:30
Alignment explanation
Indices: 57687341--57687471 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
57687331 ATAGTGAATC
*
57687341 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
57687370 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
57687400 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
57687428 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
57687458 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57687472 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:57687451 original size:58 final size:58
Alignment explanation
Indices: 57687340--57687471 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
57687330 TATAGTGAAT
* * * * *
57687340 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
57687399 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
57687457 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
57687472 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:57694188 original size:71 final size:71
Alignment explanation
Indices: 57694105--57694267 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
57694095 CGATTTGTCT
57694105 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57694170 CTTTCA
66 CTTTCA
57694176 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
57694241 CTTTCA
66 CTTTCA
57694247 CGTAGCTCTCTTG-CTACATGG
1 CGTAGCTCTCTTGTCTACATGG
57694268 GATACATCTC
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 8 0.09
71 84 0.91
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:57697864 original size:2 final size:2
Alignment explanation
Indices: 57697859--57697897 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
57697849 AAATCAATAC
57697859 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
57697898 AGCATGGTGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:57701478 original size:21 final size:22
Alignment explanation
Indices: 57701452--57701492 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
57701442 CACTTGACAC
*
57701452 AGGGGC-ACACGCCCGTGTGGG
1 AGGGGCAACACGCCCATGTGGG
57701473 AGGGGCAACACGCCCATGTG
1 AGGGGCAACACGCCCATGTG
57701493 AGCATTCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.20, C:0.29, G:0.41, T:0.10
Consensus pattern (22 bp):
AGGGGCAACACGCCCATGTGGG
Found at i:57705056 original size:31 final size:31
Alignment explanation
Indices: 57705019--57705092 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
57705009 TCCCATGCCA
*
57705019 CACGGGCGTGTGTGACCACATGGCCTACCTC
1 CACGGGCGTGTGTGACCACACGGCCTACCTC
57705050 CACGGGCGTGTGTGACCACACGGCCTACCTC
1 CACGGGCGTGTGTGACCACACGGCCTACCTC
*
57705081 CACGGGCATGTG
1 CACGGGCGTGTG
57705093 ACTCTCCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.16, C:0.35, G:0.31, T:0.18
Consensus pattern (31 bp):
CACGGGCGTGTGTGACCACACGGCCTACCTC
Found at i:57709452 original size:40 final size:40
Alignment explanation
Indices: 57709408--57709565 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
57709398 CGCTTGGTTA
*
57709408 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGCCCGGATT
*
57709448 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATT
** *
57709488 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTTCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATT
* * *
57709528 TAGTCACTTAGCACAAA-GCCTTCGGGA-CTCAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGCCCGGA
57709566 CATCATTCGA
Statistics
Matches: 106, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.03
40 92 0.87
41 11 0.10
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATT
Found at i:57717255 original size:30 final size:29
Alignment explanation
Indices: 57717161--57717262 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
57717151 TATAGTGAAT
* * *
57717161 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
57717190 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
57717218 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
57717248 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
57717263 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:57720615 original size:40 final size:40
Alignment explanation
Indices: 57720578--57720763 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
57720568 GCTACTCGTT
* *
57720578 CAAATGCCTTCGGGACATCGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
57720618 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
57720658 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
57720698 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
57720739 CAAA-GCCTTCGGGACTCAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
57720764 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:57738909 original size:28 final size:28
Alignment explanation
Indices: 57738863--57738931 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
57738853 TTTAAAACCC
*
57738863 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
57738890 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
57738918 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
57738932 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:57740760 original size:19 final size:18
Alignment explanation
Indices: 57740723--57740766 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
57740713 ATACATACAG
57740723 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
57740740 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
57740759 TACTAATT
1 TAATAATT
57740767 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:57743187 original size:28 final size:28
Alignment explanation
Indices: 57743152--57743210 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
57743142 CTAGGGTATA
57743152 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
57743180 TCGGTAATTTTGCTCTTTAGGGGTAATT
1 TCGGTAATTTTGCTCTTTAGGGGTAATT
57743208 TCG
1 TCG
57743211 TGATCTACGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.25, T:0.46
Consensus pattern (28 bp):
TCGGTAATTTTGCTCTTTAGGGGTAATT
Found at i:57745039 original size:19 final size:18
Alignment explanation
Indices: 57745002--57745045 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
57744992 ATACATACAG
57745002 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
57745019 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
57745038 TACTAATT
1 TAATAATT
57745046 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:57746603 original size:45 final size:45
Alignment explanation
Indices: 57746548--57746634 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
57746538 CCAAAACATG
57746548 TGTCACATATATCACAAACTCAGACCAAAACTCAATGAGTTTGGA
1 TGTCACATATATCACAAACTCAGACCAAAACTCAATGAGTTTGGA
* ** * *
57746593 TGTCAGATATATCATGAACTCAGACCACAACTTAATGAGTTT
1 TGTCACATATATCACAAACTCAGACCAAAACTCAATGAGTTT
57746635 AGATTGCATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (45 bp):
TGTCACATATATCACAAACTCAGACCAAAACTCAATGAGTTTGGA
Found at i:57752586 original size:43 final size:44
Alignment explanation
Indices: 57752523--57752606 Score: 125
Period size: 43 Copynumber: 1.9 Consensus size: 44
57752513 ATCGAAATAT
* * *
57752523 GATATTCGGGCTTCGGGCCTAGCATGCTATAATGTCGGTGAGAC
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
*
57752567 GATA-TCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
1 GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
57752607 AATGAAATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 32 0.89
44 4 0.11
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.26
Consensus pattern (44 bp):
GATATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAGAC
Found at i:57752942 original size:39 final size:39
Alignment explanation
Indices: 57752887--57753094 Score: 276
Period size: 38 Copynumber: 5.3 Consensus size: 39
57752877 AATTGATGTG
* * *
57752887 TATCCGGGCTTAAAGACTCGCAGGCTTTGTCCTGGTAATA
1 TATCCGGG-TTAAAGACCCGCAGGCTTCGTGCTGGTAATA
*
57752927 TATCCGGGTTAAAGACCCGCAGGCTTCGTGCTAGTAATA
1 TATCCGGGTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
* *
57752966 TATCCGGGTTAAA-TCCCTCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
* *
57753004 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAAGACCCGCAGGCTTCGTGCTGGTAATA
* * * *
57753044 TATCCGGGTTAAA-TCCCACAGGCTTCGTACTGGTATTA
1 TATCCGGGTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
57753082 TATCCGGGTTAAA
1 TATCCGGGTTAAA
57753095 TCCCATTATA
Statistics
Matches: 151, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 64 0.42
39 50 0.33
40 37 0.25
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (39 bp):
TATCCGGGTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
Found at i:57753032 original size:78 final size:77
Alignment explanation
Indices: 57752907--57753094 Score: 295
Period size: 78 Copynumber: 2.4 Consensus size: 77
57752897 TAAAGACTCG
* *
57752907 CAGGCTTTGTCCTGGTAATATATCCGGGTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATCCG
1 CAGGCTTCGTACTGGTAATATATCCGGGTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATCCG
*
57752972 GGTTAAATCCCT
66 GGTTAAATCCCA
* * * *
57752984 CAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGTATTATATCC
1 CAGGCTTCGTACTGGTAATATATCCGGG-TTAAAGACCCGCAGGCTTCGTGCTAGTAATATATCC
57753049 GGGTTAAATCCCA
65 GGGTTAAATCCCA
*
57753062 CAGGCTTCGTACTGGTATTATATCCGGGTTAAA
1 CAGGCTTCGTACTGGTAATATATCCGGGTTAAA
57753095 TCCCATTATA
Statistics
Matches: 102, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
77 31 0.30
78 71 0.70
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (77 bp):
CAGGCTTCGTACTGGTAATATATCCGGGTTAAAGACCCGCAGGCTTCGTGCTAGTAATATATCCG
GGTTAAATCCCA
Found at i:57753099 original size:38 final size:38
Alignment explanation
Indices: 57752887--57753219 Score: 270
Period size: 38 Copynumber: 9.1 Consensus size: 38
57752877 AATTGATGTG
* * * * *
57752887 TATCCGGGCTTAAAGACTCGCAGGCTTTGTCCTGGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
* * *
57752927 TATCCGGGTTAAAGACCCGCAGGCTTCGTGCTAGTAATA
1 TATCCGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
* *
57752966 TATCCGGGTTAAATCCCTCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* *
57753004 TATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
* *
57753044 TATCCGGGTTAAATCCCACAGGCTTCGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * *
57753082 TATCCGGGTTAAAT-CC-CA---TT-ATATCTGG-GTTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGT-GCTGGTATTA
* * *
57753114 AATCC------C-----GCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
57753141 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
* * * *
57753179 TATCCGGGTTAAATCCCACAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
57753217 TAT
1 TAT
57753220 TCAGGCCTTT
Statistics
Matches: 242, Mismatches: 31, Indels: 42
0.77 0.10 0.13
Matches are distributed among these distances:
23 2 0.01
26 6 0.02
27 7 0.03
32 8 0.03
33 6 0.02
36 2 0.01
37 2 0.01
38 122 0.50
39 50 0.21
40 37 0.15
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
Found at i:57753104 original size:21 final size:21
Alignment explanation
Indices: 57753078--57753119 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
57753068 TCGTACTGGT
57753078 ATTATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCC
*
57753099 ATTATATCTGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCC
57753120 GCAGGCTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (21 bp):
ATTATATCCGGGTTAAATCCC
Found at i:57753113 original size:59 final size:59
Alignment explanation
Indices: 57753040--57753157 Score: 200
Period size: 59 Copynumber: 2.0 Consensus size: 59
57753030 TCGTGCTGGT
*
57753040 ATTATATCCGGGTTAAATCCCACAGGCTTCGTACTGGTATTATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCCACAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCC
* * *
57753099 ATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCC
1 ATTATATCCGGGTTAAATCCCACAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCC
57753158 GCAGGCTTCG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (59 bp):
ATTATATCCGGGTTAAATCCCACAGGCTTCGTACTGGTAATATATCCGGGTTAAATCCC
Found at i:57753191 original size:97 final size:99
Alignment explanation
Indices: 57753002--57753196 Score: 322
Period size: 97 Copynumber: 2.0 Consensus size: 99
57752992 GTGCTGGTAA
* *
57753002 TATATCCGGGCTTAAAGACCCGTAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGC
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGC
57753067 TTCGTACTGGTATTATATCCGGGTTAAATCCCAT
66 TTCGTACTGGTATTATATCCGGGTTAAATCCCAT
* * *
57753101 TATATCTGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGC
1 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGC
*
57753164 TTCGTGCTGGTATTATATCCGGGTTAAATCCCA
66 TTCGTACTGGTATTATATCCGGGTTAAATCCCA
57753197 CAGGCCTAGT
Statistics
Matches: 90, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
97 76 0.84
98 5 0.06
99 9 0.10
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (99 bp):
TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCACAGGC
TTCGTACTGGTATTATATCCGGGTTAAATCCCAT
Found at i:57753209 original size:135 final size:137
Alignment explanation
Indices: 57752964--57753219 Score: 444
Period size: 135 Copynumber: 1.9 Consensus size: 137
57752954 GTGCTAGTAA
* *
57752964 TATATCCGGGTTAAATCCCTCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGTAGGC
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGCAGGC
* *
57753029 TTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCTTCGTACTGGTATTATATCCGGGTTAA
66 TTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAGTACTGGTATTATATCCGGGTTAA
57753094 ATCCCAT
131 ATCCCAT
* *
57753101 TATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAA-TCCCGCAGGC
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGCAGGC
57753164 TTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAGTACTGGTATTATAT
66 TTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAGTACTGGTATTATAT
57753220 TCAGGCCTTT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
135 62 0.55
136 5 0.04
137 46 0.41
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.32
Consensus pattern (137 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGACCCGCAGGC
TTCGTGCTGGTATTATATCCGGGTTAAATCCCACAGGCCTAGTACTGGTATTATATCCGGGTTAA
ATCCCAT
Found at i:57754477 original size:40 final size:40
Alignment explanation
Indices: 57754422--57754502 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
57754412 AAGTAAAAAA
* *
57754422 AAAAGACTAAATTGAAAATGGTGCAAAACTTGCTAATTAT
1 AAAAGACTAAATTGAAAAAGGTGAAAAACTTGCTAATTAT
*
57754462 AAAAGACTAAATTGAAAAAGGTGAAAAATTTGCTAATTAT
1 AAAAGACTAAATTGAAAAAGGTGAAAAACTTGCTAATTAT
57754502 A
1 A
57754503 GCAATTAGGC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.27
Consensus pattern (40 bp):
AAAAGACTAAATTGAAAAAGGTGAAAAACTTGCTAATTAT
Found at i:57758084 original size:24 final size:24
Alignment explanation
Indices: 57758052--57758160 Score: 157
Period size: 24 Copynumber: 4.5 Consensus size: 24
57758042 AATCTCAAAT
57758052 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
*
57758076 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
57758100 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* ** *
57758124 GCACGATGTGTGCGAACATAATA-G
1 GCACTATGTGTGCG-ATTTACTATG
57758148 GCACTATGTGTGC
1 GCACTATGTGTGC
57758161 AACGTTTGGT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
24 72 0.94
25 5 0.06
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:57766569 original size:48 final size:48
Alignment explanation
Indices: 57766433--57766604 Score: 204
Period size: 48 Copynumber: 3.6 Consensus size: 48
57766423 ATGAGATTCT
* * * * **
57766433 GTGTAAGACCATGTCTAGGACATGGTATCAGCGATGATATATGTGCTT
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCA
*
57766481 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCA
* * *
57766529 GTGTAAGACCATGTCTGGGACATGGCATCAACAATGATATGTAGAGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGT-GTGCCA
* *
57766578 -TCTAAAACCATGTC-GAGGACATGGCAT
1 GTGTAAGACCATGTCTG-GGACATGGCAT
57766605 TGGTACTTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 1 0.01
48 104 0.95
49 4 0.04
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCA
Found at i:57770323 original size:40 final size:39
Alignment explanation
Indices: 57770158--57770341 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57770148 AAATTGAATG
* * *
57770158 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57770198 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57770238 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57770278 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57770317 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57770342 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57770366 original size:80 final size:81
Alignment explanation
Indices: 57770198--57770386 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57770188 GCTGGAAATT
* * * *
57770198 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57770263 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57770279 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57770342 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57770358 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57770387 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57778367 original size:40 final size:39
Alignment explanation
Indices: 57778202--57778385 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
57778192 AAATTGAATG
* * *
57778202 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
57778242 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
57778282 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
57778322 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
57778361 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
57778386 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:57778410 original size:80 final size:81
Alignment explanation
Indices: 57778242--57778430 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
57778232 GCTGGAAATT
* * * *
57778242 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
57778307 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
57778323 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
57778386 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
57778402 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
57778431 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:57780415 original size:17 final size:16
Alignment explanation
Indices: 57780389--57780423 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 16
57780379 TAAAGCCATG
57780389 ACAAATAGATACCTTT
1 ACAAATAGATACCTTT
57780405 ACAATATAGATACCTTT
1 ACAA-ATAGATACCTTT
57780422 AC
1 AC
57780424 TTCAGCACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (16 bp):
ACAAATAGATACCTTT
Found at i:57784411 original size:25 final size:24
Alignment explanation
Indices: 57784375--57784427 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
57784365 CACAAACGCA
*
57784375 GCTCTTTATGAG-TGTCCTGATATAG
1 GCTCTTTATGAGCT-TCCTGACAT-G
57784400 GCTCTTCT-TGAGCTTCCTGACATG
1 GCTCTT-TATGAGCTTCCTGACATG
57784424 GCTC
1 GCTC
57784428 GCTTGAACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
24 5 0.20
25 18 0.72
26 2 0.08
ACGTcount: A:0.15, C:0.25, G:0.23, T:0.38
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGACATG
Found at i:57788673 original size:27 final size:28
Alignment explanation
Indices: 57788643--57788742 Score: 121
Period size: 28 Copynumber: 3.5 Consensus size: 28
57788633 ATAGTGAGTC
57788643 CGCACACTTAGTGCTATACAATC-AACT
1 CGCACACTTAGTGCTATACAATCAAACT
**
57788670 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
* * *
57788698 CGCACACTTAGTGCTGTACAAGTTTTAAACC
1 CGCACACTTAGTGCTATACAA---TCAAACT
57788729 CGCACACTTAGTGC
1 CGCACACTTAGTGC
57788743 CATTCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
31 19 0.31
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:57797095 original size:39 final size:40
Alignment explanation
Indices: 57796995--57797176 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 40
57796985 TCGAATGATG
* * *
57796995 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-AAGTTACTAAA
* * * *
57797035 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTCGTGCAAGTTACTAAA
57797075 TCCGGGCTAAG-CCCGAAGGCATT-GTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
* * * **
57797113 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCGCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTA-AA
**
57797154 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57797177 TGAGCGAGTC
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
38 22 0.19
39 23 0.20
40 63 0.54
41 9 0.08
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCAAGTTACTAAA
Found at i:57797140 original size:78 final size:80
Alignment explanation
Indices: 57796995--57797176 Score: 210
Period size: 78 Copynumber: 2.3 Consensus size: 80
57796985 TCGAATGATG
* * * *
57796995 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
57797060 GTGCGAGTTAATAAA
66 GTGCGAGTTAATAAA
* **
57797075 TCCGGGCTAAG-CCCGAAGGCATTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATT
***
57797137 CGTGCGAGTCGCTATAA
65 CGTGCGAGTTAATA-AA
**
57797154 -CCGGGCTTCGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
57797177 TGAGCGAGTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 46 0.53
79 29 0.33
80 11 0.13
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
GTGCGAGTTAATAAA
Found at i:57801981 original size:17 final size:18
Alignment explanation
Indices: 57801939--57801987 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
57801929 AGTTGAAAAG
57801939 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
57801958 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
57801975 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
57801988 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:57802876 original size:40 final size:40
Alignment explanation
Indices: 57802810--57802976 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
57802800 AAATTGAATG
* * *
57802810 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
57802849 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
57802889 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
57802929 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
57802969 ATATCCGG
1 ATATCCGG
57802977 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:57809991 original size:17 final size:18
Alignment explanation
Indices: 57809949--57809997 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
57809939 AGTTGAAAAG
57809949 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
57809968 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
57809985 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
57809998 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:57810885 original size:40 final size:40
Alignment explanation
Indices: 57810819--57810985 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
57810809 AAATTGAATG
* * *
57810819 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
57810858 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
57810898 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
57810938 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
57810978 ATATCCGG
1 ATATCCGG
57810986 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:57813869 original size:89 final size:89
Alignment explanation
Indices: 57813718--57813897 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
57813708 AGTACTGGGA
*
57813718 TTCCAAAAACGTAGAAATTACAAGCAAATGGACTAAATTGACTAACCGATTAAAGTTTAAAAAAT
1 TTCCAAAAACGTAGAAATTACAAGAAAATGGACTAAATTGACTAACCGATTAAAGTTTAAAAAAT
*
57813783 TTGAAACCCTTGGCCATGCGTTTC
66 TCGAAACCCTTGGCCATGCGTTTC
*
57813807 TTCCAAAAACGTAGAAATTACAAGAAAATGGACTAAATTGACTAACCGGTTAAAGTTTAAAAAAT
1 TTCCAAAAACGTAGAAATTACAAGAAAATGGACTAAATTGACTAACCGATTAAAGTTTAAAAAAT
*
57813872 TCGAAACCCTTGGCCGTGCGTTTC
66 TCGAAACCCTTGGCCATGCGTTTC
57813896 TT
1 TT
57813898 TCTCTTTTCT
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (89 bp):
TTCCAAAAACGTAGAAATTACAAGAAAATGGACTAAATTGACTAACCGATTAAAGTTTAAAAAAT
TCGAAACCCTTGGCCATGCGTTTC
Found at i:57813918 original size:13 final size:13
Alignment explanation
Indices: 57813900--57813946 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
57813890 CGTTTCTTTC
*
57813900 TCTTTTCTCCCTT
1 TCTTTTCTCCATT
**
57813913 TCTTTTCT-TTTT
1 TCTTTTCTCCATT
57813925 CTCTTTTCTCCATT
1 -TCTTTTCTCCATT
57813939 TCTTTTCT
1 TCTTTTCT
57813947 TTCTCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 2 0.07
13 24 0.86
14 2 0.07
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (13 bp):
TCTTTTCTCCATT
Done.