Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 195 of 328
Found at i:58163850 original size:21 final size:21
Alignment explanation
Indices: 58163826--58163873 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
58163816 GAATTGCACT
*
58163826 ACCATTAAACCACTATCAACC
1 ACCATCAAACCACTATCAACC
58163847 ACCATCAAACCACTATCAACC
1 ACCATCAAACCACTATCAACC
58163868 ACCATC
1 ACCATC
58163874 GACAAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.17
Consensus pattern (21 bp):
ACCATCAAACCACTATCAACC
Found at i:58164716 original size:12 final size:12
Alignment explanation
Indices: 58164679--58164725 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
58164669 ACATCTCCAA
*
58164679 ATGCATAATTAG
1 ATGCATAATCAG
* *
58164691 ATGCAAAATTAG
1 ATGCATAATCAG
58164703 ATGCATAATCAG
1 ATGCATAATCAG
*
58164715 ATACATAATCA
1 ATGCATAATCA
58164726 TATCCTACCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (12 bp):
ATGCATAATCAG
Found at i:58168161 original size:29 final size:29
Alignment explanation
Indices: 58168089--58168153 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
58168079 GTGACGAGAT
58168089 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
58168118 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
58168147 TGGCACT
1 TGGCACT
58168154 GGGTGTGCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:58179618 original size:55 final size:56
Alignment explanation
Indices: 58179513--58179639 Score: 147
Period size: 55 Copynumber: 2.3 Consensus size: 56
58179503 AGGGTTTAAA
* *
58179513 GATACCATGTAAGACCATTCCAAGGCATGGCAATTGATAAGGTTTCTAAGGC-AAG
1 GATACCATGTAAGACCATTCCAAGACATGACAATTGATAAGGTTTCTAAGGCAAAG
* *
58179568 GATACCATGTAAGACCATGT-CAAGACGTGAC-ATTGATAA-GTTACTGTAAGGCAAAG
1 GATACCATGTAAGACCAT-TCCAAGACATGACAATTGATAAGGTT--TCTAAGGCAAAG
*
58179624 G-TCCCATGTAAGACCA
1 GATACCATGTAAGACCA
58179640 ATTGGTGAGT
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
53 3 0.05
54 8 0.13
55 47 0.75
56 5 0.08
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (56 bp):
GATACCATGTAAGACCATTCCAAGACATGACAATTGATAAGGTTTCTAAGGCAAAG
Found at i:58182455 original size:22 final size:22
Alignment explanation
Indices: 58182411--58182457 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
58182401 GACGGGATAA
*
58182411 CACATAGCCGTAAACAGGACAG
1 CACATAGCCGTAAACACGACAG
58182433 CACATAGCCGTAAACATCG-CAG
1 CACATAGCCGTAAACA-CGACAG
58182455 CAC
1 CAC
58182458 CGCTGCCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.38, C:0.32, G:0.19, T:0.11
Consensus pattern (22 bp):
CACATAGCCGTAAACACGACAG
Found at i:58182920 original size:41 final size:41
Alignment explanation
Indices: 58182858--58183062 Score: 279
Period size: 41 Copynumber: 5.0 Consensus size: 41
58182848 TAAAAGTCAC
* * *
58182858 CGGTGGATCCAC-AGTCGTCAAGCAACCACGCGATCCTTAGT
1 CGGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTCAAT
*
58182899 CGGTGGATCCACGATCATCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* * * *
58182940 CAGTGGATCCATGATCGTCAAGCAACCATGCAATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* *
58182981 CGATGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
*
58183022 CGGTGGATCCAC-AGTCGTCAAGCAACCATGTGATCCTCAAT
1 CGGTGGATCCACGA-TCGTCAAGCAACCATGCGATCCTCAAT
58183063 TTCTTCTTCT
Statistics
Matches: 144, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
41 143 0.99
42 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
Found at i:58184759 original size:41 final size:41
Alignment explanation
Indices: 58184700--58184822 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
58184690 TAAAATCCAC
* *
58184700 CGGTGGATCCACGATCGTCAAGCAACCATGCGATTCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* * *
58184741 TGGTGGATCCATGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
*
58184782 CGGTGGATCCACAATCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
58184823 TTCTTCCTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
Found at i:58185113 original size:27 final size:27
Alignment explanation
Indices: 58185060--58185456 Score: 284
Period size: 27 Copynumber: 14.7 Consensus size: 27
58185050 TTTCACCCTA
* * * * *
58185060 CAAGGGTGTTTTGGTAAATCTAAAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
58185087 CAAGGGTATTTTGGTAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
58185114 CAATGGTATTTCT-GTAATTTTTGAAAGT
1 CAAGGGTATTT-TGGTAATTTTACAAA-T
* * **
58185142 CAAGGATATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* * * *
58185169 TAGGGGTAATTCT-GTAATTTTCCAAAT
1 CAAGGGT-ATTTTGGTAATTTTACAAAT
* *
58185196 CAAGGGTATTTCGATAATTTT-CAAAAT
1 CAAGGGTATTTTGGTAATTTTAC-AAAT
* *
58185223 TAAGGGTATTCTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
58185250 CCAGGG-ACTTCGGTAATTTTA-AAAGT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
** * **
58185276 CGTGGGTATTTCGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
58185303 CAAAGGTATTTTGGTAATTTCATAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
58185330 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
58185357 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
58185384 CAGGGGTATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
58185411 TGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
58185438 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
58185457 CTACCCTACA
Statistics
Matches: 292, Mismatches: 69, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
25 3 0.01
26 21 0.07
27 241 0.83
28 27 0.09
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:58185321 original size:107 final size:108
Alignment explanation
Indices: 58185170--58185404 Score: 273
Period size: 107 Copynumber: 2.2 Consensus size: 108
58185160 TTTGTAAATT
* * * *
58185170 AGGGGTAATTCTGTAATTTTCCAAATCAAGGGTATTTCGATAATTTTCA-AAATTAAGGGTATTC
1 AGGGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCGATAA-TTTCATAAATTAAGGGTATTC
*
58185234 TGGTAATTTTACAAATCC-AGGG-ACTTCGGTAATTTTA-AAAGTC
65 TGGTAATTTTACAAA-CCAAGGGTACTTCGGTAATTTTACAAA-CC
** * * * *
58185277 -GTGGGTATTTCGGTAATTTTACAGGTCAAAGGTATTTTGGTAATTTCATAAATTAGGGGTATTT
1 AG-GGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCGATAATTTCATAAATTAAGGGTATTC
* *
58185341 TGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACC
65 TGGTAATTTTACAAACCAAGGGTACTTCGGTAATTTTACAAACC
*
58185385 AGGGGTATTTTGGTAATTTT
1 AGGGGTATTTCGGTAATTTT
58185405 GCTAATTGAG
Statistics
Matches: 108, Mismatches: 14, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
106 8 0.07
107 65 0.60
108 31 0.29
109 4 0.04
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (108 bp):
AGGGGTATTTCGGTAATTTTACAAATCAAAGGTATTTCGATAATTTCATAAATTAAGGGTATTCT
GGTAATTTTACAAACCAAGGGTACTTCGGTAATTTTACAAACC
Found at i:58185483 original size:81 final size:81
Alignment explanation
Indices: 58185333--58185483 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
58185323 CATAAATTAG
* * * ***
58185333 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGCATTTCAA
58185398 TAATTTTGCTAATTGA
66 TAATTTTGCTAATTGA
** **
58185414 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTCTACCCTA-CAGGGGCATTTCA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTA-CAAACCAGGGGCATTTCA
58185478 ATAATT
65 ATAATT
58185484 CTACCCTACA
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
81 57 0.97
82 2 0.03
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTACAAACCAGGGGCATTTCAA
TAATTTTGCTAATTGA
Found at i:58185502 original size:27 final size:27
Alignment explanation
Indices: 58185438--58185502 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
58185428 TTTTGTAAAC
* *
58185438 CAAGGGTATTTTAGTAATTCTACCCTA
1 CAAGGGTATTTCAATAATTCTACCCTA
* *
58185465 CAGGGGCATTTCAATAATTCTACCCTA
1 CAAGGGTATTTCAATAATTCTACCCTA
*
58185492 CAAGCGTATTT
1 CAAGGGTATTT
58185503 AGGTAATACT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (27 bp):
CAAGGGTATTTCAATAATTCTACCCTA
Found at i:58188242 original size:22 final size:22
Alignment explanation
Indices: 58188207--58188260 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
58188197 ACGGCTCAAC
*
58188207 GCCGTAGACAGGACAACACATA
1 GCCGTAAACAGGACAACACATA
* *
58188229 GCCTTAAACAGGACAGCACATA
1 GCCGTAAACAGGACAACACATA
58188251 GCCGTAAACA
1 GCCGTAAACA
58188261 TCCTAACAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.28, G:0.20, T:0.11
Consensus pattern (22 bp):
GCCGTAAACAGGACAACACATA
Found at i:58188705 original size:41 final size:41
Alignment explanation
Indices: 58188648--58188809 Score: 218
Period size: 41 Copynumber: 4.0 Consensus size: 41
58188638 CTTAAAAGCC
* *
58188648 ATCGGTGGATCCACGGTCGCCAAGCAACCATGTGATCCTTA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTA
* * *
58188689 ATCGGTTGATCCACGGTCGTCAAGAAACCATGCGATCCTCA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTA
* * *
58188730 ATCGGTGCATCCACAGTCGTCAAGCAACCACGCGAT-CTTCA
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTT-A
* *
58188771 ATCGGTGGATCCACGATCGTCAAGCAACCATACGATCCT
1 ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCT
58188810 CAATTTCTTC
Statistics
Matches: 103, Mismatches: 16, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
40 2 0.02
41 99 0.96
42 2 0.02
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (41 bp):
ATCGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTA
Found at i:58190348 original size:40 final size:41
Alignment explanation
Indices: 58190289--58190580 Score: 438
Period size: 40 Copynumber: 7.3 Consensus size: 41
58190279 CCTTCAAGAT
* *
58190289 TTAG-CCGGATATAGT-AACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
* *
58190328 TTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
* * *
58190368 TTAGCCTGGATATAG-CAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
*
58190408 TTAGCCCGGATATAGTCAA-TAGCACAAAAGCCTTCGGGAC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
*
58190448 TTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCAGGAC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
58190488 TTAGCCCGGATATAGTCAA-TAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
*
58190528 TTAGCCCGGATATAGTCAA-TAGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
58190568 TTAGCCCGGATAT
1 TTAGCCCGGATAT
58190581 CATTCGAATA
Statistics
Matches: 239, Mismatches: 9, Indels: 9
0.93 0.04 0.04
Matches are distributed among these distances:
39 5 0.02
40 230 0.96
41 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (41 bp):
TTAGCCCGGATATAGTCAACTAGCACAAATGCCTTCGGGAC
Found at i:58204761 original size:20 final size:20
Alignment explanation
Indices: 58204738--58204775 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
58204728 CACATCTAAA
*
58204738 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
58204758 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
58204776 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:58205593 original size:40 final size:40
Alignment explanation
Indices: 58205519--58205700 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
58205509 AACCCAAGTA
* *
58205519 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
58205558 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* * *
58205598 CCTTCGGGACTTGGCCCGGATATAGTCACTAGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
58205638 CCTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
58205678 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58205701 CATTCGAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 12 0.09
40 115 0.88
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:58212668 original size:40 final size:40
Alignment explanation
Indices: 58212594--58212775 Score: 269
Period size: 40 Copynumber: 4.6 Consensus size: 40
58212584 AACCCAAGTA
* *
58212594 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
58212633 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
58212673 CCTTCGGGACTTAACCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
58212713 CCTTTGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
58212753 CCTTCGGGACTTAGCCCAGATAT
1 CCTTCGGGACTTAGCCCGGATAT
58212776 CATTCGAATA
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 12 0.09
40 113 0.88
41 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:58214801 original size:27 final size:27
Alignment explanation
Indices: 58214771--58215092 Score: 154
Period size: 27 Copynumber: 12.0 Consensus size: 27
58214761 GGTAAATCTA
* *
58214771 CAAACCAAGGGTATTTCGGTAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* **
58214798 CAAATCAATGGTATTT-TTTAAATTTTTG
1 CAAATCAAGGGTATTTCAGT-AA-TTTTG
* * *
58214826 -AAAGTTAAGAGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTCAGTAATTTTG
* * * ** *
58214853 TAGATCAGGGGTATTTTTGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * ** *
58214880 CAAATTAAAGGTATTTCAAAAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
** *
58214907 CAAATC-AGGGATATTTTGGTAATTTTA
1 CAAATCAAGGG-TATTTCAGTAATTTTG
* * *
58214934 CAAATCAATGG-ATTTCAATAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * **
58214960 CAAGTCGAGGGTATTTTGGTAATTTTAG
1 CAAATCAAGGGTATTTCAGTAATTTT-G
* * ** *
58214988 -AAATCAGGGGTAATTCCTTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* **
58215014 TAAAT-AAGGGGTATTTTGGTAATTTTG
1 CAAATCAA-GGGTATTTCAGTAATTTTG
* * *
58215041 TAAACCAAGGGTA-TTCAGTAATTTTT
1 CAAATCAAGGGTATTTCAGTAATTTTG
* * *
58215067 TAAACCAAGGGTATTTCAATAATTTT
1 CAAATCAAGGGTATTTCAGTAATTTT
58215093 ACCCTACAGG
Statistics
Matches: 222, Mismatches: 60, Indels: 26
0.72 0.19 0.08
Matches are distributed among these distances:
26 48 0.22
27 149 0.67
28 23 0.10
29 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.41
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCAGTAATTTTG
Found at i:58214904 original size:54 final size:53
Alignment explanation
Indices: 58214856--58214993 Score: 170
Period size: 53 Copynumber: 2.6 Consensus size: 53
58214846 AATTTTGTAG
* * * *
58214856 ATCAGGGGTATTTTTGTAATTTTCCAAATTAAAGGTATTTCAAAAATTTTCCAA
1 ATCAGGGATATTTTGGTAATTTTACAAATCAAAGG-ATTTCAAAAATTTTCCAA
* * *
58214910 ATCAGGGATATTTTGGTAATTTTACAAATCAATGGATTTCAATAATTTTACAA
1 ATCAGGGATATTTTGGTAATTTTACAAATCAAAGGATTTCAAAAATTTTCCAA
* *
58214963 GTCGAGGG-TATTTTGGTAATTTTAGAAATCA
1 ATC-AGGGATATTTTGGTAATTTTACAAATCA
58214994 GGGGTAATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
53 40 0.54
54 34 0.46
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (53 bp):
ATCAGGGATATTTTGGTAATTTTACAAATCAAAGGATTTCAAAAATTTTCCAA
Found at i:58214957 original size:53 final size:54
Alignment explanation
Indices: 58214856--58215065 Score: 201
Period size: 54 Copynumber: 3.9 Consensus size: 54
58214846 AATTTTGTAG
* * * * *
58214856 ATCAGGGGTATTTTTGTAATTTTCCAAATTAAAGGTATTTCAAAAATTTTCCAA
1 ATCAGGGGTATTTTGGTAATTTTACAAATCAAAGGTATTTCAATAATTTTACAA
* *
58214910 ATCAGGGATATTTTGGTAATTTTACAAATCAATGG-ATTTCAATAATTTTACAA
1 ATCAGGGGTATTTTGGTAATTTTACAAATCAAAGGTATTTCAATAATTTTACAA
* * ** * ** *
58214963 GTC-GAGGGTATTTTGGTAATTTTAGAAATCAGGGGTAATTCCTTAATTTTATAA
1 ATCAG-GGGTATTTTGGTAATTTTACAAATCAAAGGTATTTCAATAATTTTACAA
* ** * * *
58215017 ATAAGGGGTATTTTGGTAATTTTGTAAACCAAGGGTA-TTCAGTAATTTT
1 ATCAGGGGTATTTTGGTAATTTTACAAATCAAAGGTATTTCAATAATTTT
58215066 TTAAACCAAG
Statistics
Matches: 129, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.01
53 54 0.42
54 73 0.57
55 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (54 bp):
ATCAGGGGTATTTTGGTAATTTTACAAATCAAAGGTATTTCAATAATTTTACAA
Found at i:58215070 original size:26 final size:27
Alignment explanation
Indices: 58215022--58215092 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 27
58215012 TATAAATAAG
**
58215022 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCAGTAATTTTGTAAACCAA
*
58215049 GGGTA-TTCAGTAATTTTTTAAACCAA
1 GGGTATTTCAGTAATTTTGTAAACCAA
*
58215075 GGGTATTTCAATAATTTT
1 GGGTATTTCAGTAATTTT
58215093 ACCCTACAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 23 0.59
27 16 0.41
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTGTAAACCAA
Found at i:58215136 original size:27 final size:27
Alignment explanation
Indices: 58215075--58215142 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
58215065 TTTAAACCAA
* *
58215075 GGGTATTTCAATAATTTTACCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
** *
58215102 GGACATTTCAGTAATTCTAGCCTACAG
1 GGGTATTTCAGTAATTCTACCCTACAG
58215129 GGGTATTTCAGTAA
1 GGGTATTTCAGTAA
58215143 CACTAGCTTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTACAG
Found at i:58215148 original size:27 final size:27
Alignment explanation
Indices: 58215095--58215154 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
58215085 ATAATTTTAC
**
58215095 CCTACAGGGACATTTCAGTAATTCTAG
1 CCTACAGGGACATTTCAGTAACACTAG
**
58215122 CCTACAGGGGTATTTCAGTAACACTAG
1 CCTACAGGGACATTTCAGTAACACTAG
*
58215149 CTTACA
1 CCTACA
58215155 TATATGAGAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.28
Consensus pattern (27 bp):
CCTACAGGGACATTTCAGTAACACTAG
Found at i:58221368 original size:55 final size:53
Alignment explanation
Indices: 58221281--58221449 Score: 187
Period size: 55 Copynumber: 3.1 Consensus size: 53
58221271 ATTAGGGTTT
*
58221281 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGC-ATTGGTAA-GTTTATAAGGC
* * * *
58221336 AAGGATACCATGTAAGACCGTGTCAAGACATGGCATTGATAAGTTACTATAAGAC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTT--TATAAGGC
* * * * * *
58221391 AAATG-TCCCATGCAAGACCATGTCAAGGCATGACATTGGTTAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTATAAGGC
58221444 AAGGAT
1 AAGGAT
58221450 TACATGCCTG
Statistics
Matches: 94, Mismatches: 16, Indels: 10
0.78 0.13 0.08
Matches are distributed among these distances:
52 3 0.03
53 10 0.11
54 7 0.07
55 71 0.76
56 3 0.03
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTATAAGGC
Found at i:58231946 original size:22 final size:22
Alignment explanation
Indices: 58231921--58231994 Score: 76
Period size: 22 Copynumber: 3.2 Consensus size: 22
58231911 CCATGCGAAA
58231921 ATGGCTTATTCATGATGTTAAT
1 ATGGCTTATTCATGATGTTAAT
* * ** *
58231943 ATGGCGTATATTTGATTATGCGAAA
1 ATGGC-T-TA-TTCATGATGTTAAT
58231968 ATGGCTTATTCATGATGTTAAT
1 ATGGCTTATTCATGATGTTAAT
58231990 ATGGC
1 ATGGC
58231995 GTATATTTAA
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
22 19 0.49
23 3 0.08
24 3 0.08
25 14 0.36
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (22 bp):
ATGGCTTATTCATGATGTTAAT
Found at i:58231969 original size:47 final size:47
Alignment explanation
Indices: 58231913--58232009 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
58231903 TTATATGGCC
*
58231913 ATGCGAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTGATT
1 ATGCGAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATT
58231960 ATGCGAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATT
1 ATGCGAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATT
58232007 ATG
1 ATG
58232010 TATTGAGCTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (47 bp):
ATGCGAAAATGGCTTATTCATGATGTTAATATGGCGTATATTTAATT
Found at i:58231983 original size:25 final size:26
Alignment explanation
Indices: 58231913--58231985 Score: 70
Period size: 22 Copynumber: 3.0 Consensus size: 26
58231903 TTATATGGCC
58231913 ATGCGAAAATGGCTTATTCATGATGT
1 ATGCGAAAATGGCTTATTCATGATGT
*
58231939 -T---AATATGGCGTATATT--TGAT-T
1 ATGCGAAAATGGC-T-TATTCATGATGT
58231960 ATGCGAAAATGGCTTATTCATGATGT
1 ATGCGAAAATGGCTTATTCATGATGT
58231986 TAATATGGCG
Statistics
Matches: 36, Mismatches: 2, Indels: 18
0.64 0.04 0.32
Matches are distributed among these distances:
21 1 0.03
22 12 0.33
23 5 0.14
24 5 0.14
25 12 0.33
26 1 0.03
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (26 bp):
ATGCGAAAATGGCTTATTCATGATGT
Found at i:58233369 original size:22 final size:23
Alignment explanation
Indices: 58233304--58233396 Score: 75
Period size: 23 Copynumber: 4.1 Consensus size: 23
58233294 AGCTTATTGT
* * *
58233304 TTTCATCTCATTAGAGCTTA-TCG
1 TTTCAACTCAATAGAGCTTACT-A
* * *
58233327 TTTCAACTC-GTATGAGTTTACTG
1 TTTCAACTCAATA-GAGCTTACTA
* *
58233350 TTT-AGCTCAATAGAGCTTACCA
1 TTTCAACTCAATAGAGCTTACTA
58233372 TTTCAACTCAATAGAGCTTACTA
1 TTTCAACTCAATAGAGCTTACTA
58233395 TT
1 TT
58233397 CATCAGCTTA
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
22 16 0.29
23 39 0.70
24 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (23 bp):
TTTCAACTCAATAGAGCTTACTA
Found at i:58233393 original size:45 final size:47
Alignment explanation
Indices: 58233257--58233393 Score: 113
Period size: 45 Copynumber: 2.9 Consensus size: 47
58233247 AGACTCACCA
* *
58233257 CAGCTCATATA-AGCTTACCGATATATCAGCTCGAA-AGAGCTTATTGTTTT
1 CAGCTCA-ATAGAGCTTACC-AT-T-TCAACTC-AATAGAGCTTACTGTTTT
* * * * * *
58233307 CATCTCATTAGAGCTTATCGTTTCAACTC-GTATGAGTTTACTG-TTT
1 CAGCTCAATAGAGCTTACCATTTCAACTCAATA-GAGCTTACTGTTTT
58233353 -AGCTCAATAGAGCTTACCATTTCAACTCAATAGAGCTTACT
1 CAGCTCAATAGAGCTTACCATTTCAACTCAATAGAGCTTACT
58233394 ATTCATCAGC
Statistics
Matches: 69, Mismatches: 14, Indels: 13
0.72 0.15 0.14
Matches are distributed among these distances:
45 32 0.46
46 6 0.09
47 14 0.20
48 1 0.01
49 3 0.04
50 13 0.19
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (47 bp):
CAGCTCAATAGAGCTTACCATTTCAACTCAATAGAGCTTACTGTTTT
Found at i:58233782 original size:31 final size:31
Alignment explanation
Indices: 58233738--58233831 Score: 170
Period size: 31 Copynumber: 3.0 Consensus size: 31
58233728 TTAAATTCTG
58233738 AATTATACGGGCTTACTAAGCTATAAAGCTT
1 AATTATACGGGCTTACTAAGCTATAAAGCTT
**
58233769 AATTATATAGGCTTACTAAGCTATAAAGCTT
1 AATTATACGGGCTTACTAAGCTATAAAGCTT
58233800 AATTATACGGGCTTACTAAGCTATAAAGCTT
1 AATTATACGGGCTTACTAAGCTATAAAGCTT
58233831 A
1 A
58233832 CTTTGTTTCT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (31 bp):
AATTATACGGGCTTACTAAGCTATAAAGCTT
Found at i:58233832 original size:17 final size:17
Alignment explanation
Indices: 58233748--58233833 Score: 60
Period size: 17 Copynumber: 5.4 Consensus size: 17
58233738 AATTATACGG
58233748 GCTTACTAAGCTATAAA
1 GCTTACTAAGCTATAAA
* * *
58233765 GCTTAATTA--TAT-AG
1 GCTTACTAAGCTATAAA
58233779 GCTTACTAAGCTATAAA
1 GCTTACTAAGCTATAAA
* **
58233796 GC-T--TAA-TTATACGG
1 GCTTACTAAGCTATA-AA
58233810 GCTTACTAAGCTATAAA
1 GCTTACTAAGCTATAAA
58233827 GCTTACT
1 GCTTACT
58233834 TTGTTTCTGT
Statistics
Matches: 49, Mismatches: 12, Indels: 16
0.64 0.16 0.21
Matches are distributed among these distances:
13 4 0.08
14 13 0.27
15 4 0.08
16 4 0.08
17 20 0.41
18 4 0.08
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (17 bp):
GCTTACTAAGCTATAAA
Found at i:58237727 original size:100 final size:98
Alignment explanation
Indices: 58237615--58237806 Score: 357
Period size: 100 Copynumber: 1.9 Consensus size: 98
58237605 ATGTATGAGA
58237615 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGAT
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA--TATATATGTGAT
*
58237680 ATGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
58237715 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
58237780 GGCCTAATGGCCGATGTGATGAATGTG
66 GGCCTAATGGCCGATGTGATGAATGTG
58237807 GAATATATGT
Statistics
Matches: 91, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
98 40 0.44
100 51 0.56
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (98 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:58237824 original size:49 final size:49
Alignment explanation
Indices: 58237615--58237806 Score: 357
Period size: 49 Copynumber: 3.9 Consensus size: 49
58237605 ATGTATGAGA
58237615 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
58237664 TATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TA--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
58237715 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
58237764 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
58237807 GAATATATGT
Statistics
Matches: 139, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
49 91 0.65
51 48 0.35
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (49 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:58237842 original size:98 final size:98
Alignment explanation
Indices: 58237640--58237938 Score: 294
Period size: 98 Copynumber: 3.1 Consensus size: 98
58237630 AGGCCTAATG
58237640 GCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGATATGGCCTAATGGCCGATGTGATGAA
1 GCCGATGTGATGAATGTGAAAGTGTA--TATATATGTGATATGGCCTAATGGCCGATGTGATGAA
* * * * * *
58237705 TGTGAAAGTGTATATAT-ATGTG-ATAAG-GCCTAATG
64 TGTGAAA-TATATGTGTGATGTGTATATGTG-GTAA-A
*
58237740 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATATGGCCTAATGGCCGATGTGATGAATG
*
58237805 TGGAATATATGTGTGATGTGTATATGTGGTAAA
66 TGAAATATATGTGTGATGTGTATATGTGGTAAA
* * * * * * *
58237838 GCCGAAG-GACT-AATGTGAAACATATATAAGATATGTG-TATGTG-GTAA-AGCCGAATG-GCT
1 GCCGATGTGA-TGAATGTGAAA-GTGTAT-ATATATGTGATATG-GCCTAATGGCCG-ATGTGAT
*
58237897 -AATGTGAAATATATGTGTGATATGTATATGTGGTAAA
61 GAATGTGAAATATATGTGTGATGTGTATATGTGGTAAA
58237934 GCCGA
1 GCCGA
58237939 ATGGCTAATG
Statistics
Matches: 173, Mismatches: 18, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
96 40 0.23
97 23 0.13
98 67 0.39
99 16 0.09
100 27 0.16
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (98 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATATGGCCTAATGGCCGATGTGATGAATG
TGAAATATATGTGTGATGTGTATATGTGGTAAA
Found at i:58237882 original size:48 final size:48
Alignment explanation
Indices: 58237823--58237952 Score: 199
Period size: 48 Copynumber: 2.7 Consensus size: 48
58237813 ATGTGTGATG
58237823 TGTATATGTGGTAAAGCCGAA-GGACTAATGTGAAACATATATAAGATA
1 TGTATATGTGGTAAAGCCGAATGG-CTAATGTGAAACATATATAAGATA
* * * **
58237871 TGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
58237919 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 TGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
58237953 TGTTGTAATA
Statistics
Matches: 75, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
48 73 0.97
49 2 0.03
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TGTATATGTGGTAAAGCCGAATGGCTAATGTGAAACATATATAAGATA
Found at i:58238038 original size:37 final size:37
Alignment explanation
Indices: 58237992--58238082 Score: 119
Period size: 37 Copynumber: 2.4 Consensus size: 37
58237982 AACTTGGAAA
* * * *
58237992 TATGTTCCGGGTGAGACCCGATGACTACTTGTGGAGAT
1 TATG-TCCGGGTAAGACCCGATGACTACATCTAGAGAT
58238030 TATGTCCGGGTAAGACCCGATGACTACATCTAGAGAT
1 TATGTCCGGGTAAGACCCGATGACTACATCTAGAGAT
* *
58238067 TATGTTCAGGTAAGAC
1 TATGTCCGGGTAAGAC
58238083 TACATAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
37 43 0.91
38 4 0.09
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (37 bp):
TATGTCCGGGTAAGACCCGATGACTACATCTAGAGAT
Found at i:58246208 original size:39 final size:40
Alignment explanation
Indices: 58246164--58246290 Score: 170
Period size: 40 Copynumber: 3.2 Consensus size: 40
58246154 CCTTCGGAAT
* *
58246164 TTAG-CCGGATATAGCT-ACTCGCTCAAATGCCTTCGAGAC
1 TTAGCCCGGTTATAG-TAACTCGCACAAATGCCTTCGAGAC
* *
58246203 TTAGCCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
**
58246243 TTAGCCCGGTTATAGTAACTCGCAC-AATTACTTCGAGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
58246282 TTAGCCCGG
1 TTAGCCCGG
58246291 AATTGGTCAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 25 0.32
40 53 0.68
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGAGAC
Found at i:58254541 original size:79 final size:81
Alignment explanation
Indices: 58254432--58254614 Score: 241
Period size: 79 Copynumber: 2.3 Consensus size: 81
58254422 TACTCGTTCA
* *
58254432 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
58254495 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
58254512 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
58254575 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
58254591 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
58254615 CATCATTCGA
Statistics
Matches: 91, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 3 0.03
79 60 0.66
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:58254614 original size:40 final size:40
Alignment explanation
Indices: 58254411--58254614 Score: 247
Period size: 40 Copynumber: 5.1 Consensus size: 40
58254401 CGGAATTTAA
** *
58254411 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58254451 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
58254491 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
58254530 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
58254570 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
58254610 CCGGA
1 CCGGA
58254615 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 95 0.67
41 12 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:58255865 original size:13 final size:13
Alignment explanation
Indices: 58255846--58255882 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 13
58255836 AACATGAGAG
58255846 CTTTTTTTTC--T
1 CTTTTTTTTCTTT
58255857 CTTTTTTTTCTTT
1 CTTTTTTTTCTTT
58255870 CTTTTTCTTTCTT
1 CTTTTT-TTTCTT
58255883 CTATTCGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.43
13 7 0.30
14 6 0.26
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
CTTTTTTTTCTTT
Found at i:58255884 original size:13 final size:12
Alignment explanation
Indices: 58255846--58255884 Score: 53
Period size: 13 Copynumber: 3.2 Consensus size: 12
58255836 AACATGAGAG
58255846 CTTTTTTTTC-T
1 CTTTTTTTTCTT
58255857 CTTTTTTTTCTTT
1 CTTTTTTTTC-TT
58255870 CTTTTTCTTTCTT
1 CTTTTT-TTTCTT
58255883 CT
1 CT
58255885 ATTCGGCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.40
13 11 0.44
14 4 0.16
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (12 bp):
CTTTTTTTTCTT
Found at i:58255925 original size:63 final size:63
Alignment explanation
Indices: 58255798--58255930 Score: 146
Period size: 63 Copynumber: 2.1 Consensus size: 63
58255788 CTCAAAGCTC
* * * * *
58255798 TTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTTTTTTTTCTCTTT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGATATCTCTTCTCTTT
* * *
58255861 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCTAGGAAGAAGCATGA-ATGATGATCTCTT-T-TT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAA-CATGAGA-GAT-ATCTCTTCTCTT
58255923 T
63 T
58255924 TTTTTCT
1 TTTTTCT
58255931 CTTTCACCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 47 0.80
64 8 0.14
65 4 0.07
ACGTcount: A:0.16, C:0.19, G:0.11, T:0.54
Consensus pattern (63 bp):
TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGATATCTCTTCTCTTT
Found at i:58258255 original size:39 final size:39
Alignment explanation
Indices: 58258201--58258338 Score: 138
Period size: 40 Copynumber: 3.5 Consensus size: 39
58258191 AAACCAAGTA
* * *
58258201 CCTTCGGAATTTAG-CCGGATATAGCTACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTTGCACAAATG
* * *
58258240 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTTGCACAAATG
* *
58258280 CTTTCGGGACTTAGCCCGGA-ATTGGT-CATTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAC-TT-GCACAAATG
58258320 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58258339 TTATCATCCG
Statistics
Matches: 82, Mismatches: 12, Indels: 9
0.80 0.12 0.09
Matches are distributed among these distances:
38 1 0.01
39 15 0.18
40 66 0.80
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTTGCACAAATG
Found at i:58258286 original size:40 final size:40
Alignment explanation
Indices: 58258234--58258342 Score: 139
Period size: 40 Copynumber: 2.7 Consensus size: 40
58258224 GCTACTTGCT
*
58258234 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
* * * * * *
58258274 CAATTGCTTTCGGGACTTAGCCCGG-AATTGGTCATTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTAGCA
58258314 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
58258343 CATCCGAATA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
39 1 0.02
40 55 0.96
41 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTAGCA
Found at i:58266440 original size:40 final size:40
Alignment explanation
Indices: 58266348--58266497 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
58266338 AATTGAATGA
* * * *
58266348 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAAT-T
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACATAC
* * *
58266387 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
58266428 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
58266467 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
58266498 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 31 0.34
40 54 0.59
41 3 0.03
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:58266511 original size:40 final size:40
Alignment explanation
Indices: 58266387--58266513 Score: 132
Period size: 40 Copynumber: 3.2 Consensus size: 40
58266377 GCTGGAAATT
* * * * *
58266387 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
* * ** *
58266427 CATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CATTC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
58266467 TATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGGTTA
58266507 TATCCGG
1 TATCCGG
58266514 TTATGTTCCG
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 67 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGGTTA
Found at i:58274415 original size:40 final size:40
Alignment explanation
Indices: 58274330--58274480 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
58274320 AATTGAATGA
* * *
58274330 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
58274370 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
58274411 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
58274450 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
58274481 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:58274494 original size:40 final size:40
Alignment explanation
Indices: 58274367--58274496 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
58274357 ATGCTGGAAA
* * * *
58274367 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
58274407 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
58274447 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
58274487 TTATATCCGG
1 TTATATCCGG
58274497 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:58278333 original size:124 final size:124
Alignment explanation
Indices: 58278111--58278335 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
58278101 GAATTATGTG
* * * * * * *
58278111 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
58278176 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
58278235 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
58278300 GCTAAGTCCCGAAGAC-ATTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
58278336 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 4 0.05
124 84 0.95
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:58278457 original size:40 final size:40
Alignment explanation
Indices: 58278330--58278459 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
58278320 TTGCTGGAAA
* * *
58278330 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
58278370 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
58278410 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
58278450 TTATATCCGG
1 TTATATCCGG
58278460 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:58289342 original size:15 final size:15
Alignment explanation
Indices: 58289319--58289353 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
58289309 CACCCAAATC
*
58289319 ACATAACTCCTAATG
1 ACATGACTCCTAATG
58289334 ACATGACTCCTAATG
1 ACATGACTCCTAATG
58289349 ACATG
1 ACATG
58289354 TCATTCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (15 bp):
ACATGACTCCTAATG
Found at i:58290336 original size:13 final size:13
Alignment explanation
Indices: 58290318--58290343 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58290308 ATATTATAAT
58290318 TATTTTATGTTAA
1 TATTTTATGTTAA
58290331 TATTTTATGTTAA
1 TATTTTATGTTAA
58290344 AAAATAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:58291773 original size:40 final size:40
Alignment explanation
Indices: 58291722--58291967 Score: 422
Period size: 40 Copynumber: 6.2 Consensus size: 40
58291712 GGACTAAGAT
*
58291722 CCGAAGACATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
58291762 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
*
58291802 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
58291842 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* *
58291882 CCGAAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
* * *
58291922 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
58291961 CCGAAGG
1 CCGAAGG
58291968 TACTTGGGTT
Statistics
Matches: 196, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
39 15 0.08
40 181 0.92
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
Found at i:58297327 original size:29 final size:29
Alignment explanation
Indices: 58297286--58297348 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 29
58297276 ATAAATATCA
*
58297286 AATTTATACATG-AACTTTGATTTGGTGC
1 AATTTATACATGAAACTTTGATTTGATGC
* *
58297314 AATTTGATACATGAAATTTTGATTTGATTC
1 AATTT-ATACATGAAACTTTGATTTGATGC
58297344 AATTT
1 AATTT
58297349 TCAAAAATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 7 0.23
30 18 0.60
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (29 bp):
AATTTATACATGAAACTTTGATTTGATGC
Found at i:58306014 original size:26 final size:27
Alignment explanation
Indices: 58305957--58306011 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
58305947 AATTGCCCAT
*
58305957 GGTTTTTCTAACATGAGAATCAAAGAG
1 GGTTTTTCCAACATGAGAATCAAAGAG
58305984 GGTTTTTCCAACATGAGAATCAAAGAG
1 GGTTTTTCCAACATGAGAATCAAAGAG
58306011 G
1 G
58306012 TTTGTCAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (27 bp):
GGTTTTTCCAACATGAGAATCAAAGAG
Found at i:58307669 original size:46 final size:46
Alignment explanation
Indices: 58307617--58307930 Score: 311
Period size: 46 Copynumber: 6.8 Consensus size: 46
58307607 TATTTGGGCA
* *
58307617 TCCGAACTCGTTGAGTCGAGTCCGAGTTCAATTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
58307663 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
58307708 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
58307756 TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
58307802 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * *
58307847 CATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
58307895 TCGGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
58307931 AGCGGTTTAC
Statistics
Matches: 223, Mismatches: 27, Indels: 36
0.78 0.09 0.13
Matches are distributed among these distances:
42 6 0.03
43 8 0.04
45 5 0.02
46 129 0.58
47 55 0.25
48 6 0.03
50 8 0.04
51 6 0.03
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:58307772 original size:93 final size:93
Alignment explanation
Indices: 58307613--58307784 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
58307603 CGGATATTTG
*
58307613 GGCATCCGAACTCGTTGAGTCGAGTCCGAGTTCAATTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTCGAGTCCGAGTTCAATTATGGATGCGAACGTCCGAACTCATTGAG
*
58307678 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * *
58307706 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTCGAGTCCGAGTTCAATTATGGATGCGAACGTCCGAACTCATTGAG
58307771 TTGAGTCCAAGTTC
66 TTGAGTCCAAGTTC
58307785 ACTTATGGAT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTCGAGTCCGAGTTCAATTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:58307853 original size:93 final size:93
Alignment explanation
Indices: 58307756--58307924 Score: 257
Period size: 93 Copynumber: 1.8 Consensus size: 93
58307746 GATGCGAACG
*
58307756 TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGA
1 TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACATCCGAACTCGTTGAGTTGA
*
58307821 GTCCGAGTTCGTGAGATGTAACTAGGCA
66 GTCCAAGTTCGTGAGATGTAACTAGGCA
* * * * * * *
58307849 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAACGTCGGAGCTCGTTGAGTTGA
1 TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACATCCGAACTCGTTGAGTTGA
58307914 GTCCAAGTTCG
66 GTCCAAGTTCG
58307925 CTTATGAGCG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACATCCGAACTCGTTGAGTTGA
GTCCAAGTTCGTGAGATGTAACTAGGCA
Found at i:58307867 original size:139 final size:139
Alignment explanation
Indices: 58307617--58307930 Score: 538
Period size: 139 Copynumber: 2.3 Consensus size: 139
58307607 TATTTGGGCA
* * * *
58307617 TCCGAACTCGTTGAGTCGAGTCCGAGTTCAATTATGGATGCGAACGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGA
58307682 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
66 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
*
58307747 ATGCGAACG
131 ATGCAAACG
*
58307756 TCCGAACTCATTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGA
*
58307821 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGG
66 GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58307886 ATGCAAACG
131 ATGCAAACG
* * *
58307895 TCGGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATG
58307931 AGCGGTTTAC
Statistics
Matches: 164, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 164 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (139 bp):
TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAGTTGA
GTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
ATGCAAACG
Found at i:58310930 original size:15 final size:15
Alignment explanation
Indices: 58310888--58310931 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
58310878 CATAGTATCG
*
58310888 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
58310903 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTC
58310918 TATCTTGGATTTCT
1 TATCTTGGATTTCT
58310932 TTATTCAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:58312947 original size:46 final size:46
Alignment explanation
Indices: 58312895--58313160 Score: 208
Period size: 46 Copynumber: 5.7 Consensus size: 46
58312885 TTGGGCATCT
58312895 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * * *
58312941 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* * * * *
58312988 GAGCTTGTTGAGTTGAATCCGAGTTTACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
58313034 GAACTCATTGAGTTGAGTCCGAG-T---TTGTGAGATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAAC---G--TCC
* *
58313081 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * * *
58313127 GAGCTTGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58313161 GTGGGTTACA
Statistics
Matches: 174, Mismatches: 26, Indels: 40
0.73 0.11 0.17
Matches are distributed among these distances:
42 10 0.06
43 8 0.05
45 5 0.03
46 81 0.47
47 47 0.27
48 5 0.03
50 8 0.05
51 10 0.06
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:58312998 original size:93 final size:93
Alignment explanation
Indices: 58312888--58313153 Score: 424
Period size: 93 Copynumber: 2.9 Consensus size: 93
58312878 TCGGATTTTG
*
58312888 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
58312953 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
58312981 GGCATCTGAGCTTGTTGAGTTGAATCCGAGTTTACTTATGGATGCGAACGTCTGAACTCATTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
58313046 TTGAGTCCGAGTTTGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
58313074 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTTGTTGAG
1 GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
58313139 TTGAGTCCAAGTTCG
66 TTGAGTCCGAGTTCG
58313154 CTTATGGGTG
Statistics
Matches: 155, Mismatches: 18, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 155 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:58313094 original size:47 final size:47
Alignment explanation
Indices: 58312938--58313105 Score: 166
Period size: 47 Copynumber: 3.6 Consensus size: 47
58312928 GATGCGAACG
*
58312938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
* * * * * * *
58312985 TCTGAGCTTGTTGAGTTGAATCCGAGTTTACTTATGGATGCGAAC---G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTT-GTGA--GATG-TAACTAGGCA
* *
58313031 TCTGAACTCATTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
*
58313078 TCCGAGCTCGTTGAGTTGAGTCCGAGTT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTT
58313106 CACTTATGGA
Statistics
Matches: 94, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 25 0.27
47 49 0.52
48 3 0.03
50 4 0.04
51 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
Found at i:58320861 original size:46 final size:46
Alignment explanation
Indices: 58320730--58320993 Score: 176
Period size: 46 Copynumber: 5.7 Consensus size: 46
58320720 TTATTTGGCT
* * * * ** *
58320730 AGTGTAAGACATGTCTGGAACATGCATTGACCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGAGCC
* * * ** * *
58320776 AGCGTAAGACATCTCTGGGACATGCATCGGCATTGAGACGAGAACT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGAGCC
58320822 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACG-AGAGCC
* * * * * * *
58320868 AGTTTGAGACATGTCTGGGACATGCATCAG-CTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CAAGACGAGAGCC
* * * ** ** *
58320914 ATTGTAAGACCATGTTTGGTACATGGCATC-TACTTGAGA-TATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGACGA-GAGCC
58320961 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
58320994 ACCTTACCCA
Statistics
Matches: 168, Mismatches: 42, Indels: 14
0.75 0.19 0.06
Matches are distributed among these distances:
45 3 0.02
46 111 0.66
47 47 0.28
48 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGAGAGCC
Found at i:58320885 original size:92 final size:92
Alignment explanation
Indices: 58320728--58320895 Score: 221
Period size: 92 Copynumber: 1.8 Consensus size: 92
58320718 TGTTATTTGG
* ** *
58320728 CTAGTGTAAGACATGTCTGGAACATGCATTGACCACATTATGAGAGCCAGCGTAAGACATCTCTG
1 CTAGTGTAAGACATGTCTGGAACATGCATCGACCACAAGACGAGAGCCAGCGTAAGACATCTCTG
58320793 GGACATGCATCGGCATTGAGACGAGAA
66 GGACATGCATCGGCATTGAGACGAGAA
* * * ** * *
58320820 CTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTA-AGCCAGTTTGAGACATGTCT
1 CTAGTGTAAGACATGTCTGGAACATGCATCGACCACAAGACG-AGAGCCAGCGTAAGACATCTCT
58320884 GGGACATGCATC
65 GGGACATGCATC
58320896 AGCTACGAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
92 63 0.98
93 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (92 bp):
CTAGTGTAAGACATGTCTGGAACATGCATCGACCACAAGACGAGAGCCAGCGTAAGACATCTCTG
GGACATGCATCGGCATTGAGACGAGAA
Found at i:58326362 original size:13 final size:13
Alignment explanation
Indices: 58326344--58326370 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58326334 GCTCGGCAGG
58326344 GACACGCCCATGT
1 GACACGCCCATGT
58326357 GACACGCCCATGT
1 GACACGCCCATGT
58326370 G
1 G
58326371 TGATTACTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.37, G:0.26, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:58332017 original size:40 final size:40
Alignment explanation
Indices: 58331815--58332003 Score: 290
Period size: 40 Copynumber: 4.7 Consensus size: 40
58331805 TATTCGGATG
* * *
58331815 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
58331855 A-ATTCCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58331895 ATAATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58331935 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58331975 ATAACTGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
58332004 AGCAAGTAGC
Statistics
Matches: 135, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 133 0.99
41 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:58333461 original size:87 final size:87
Alignment explanation
Indices: 58333315--58333485 Score: 306
Period size: 87 Copynumber: 2.0 Consensus size: 87
58333305 TAAAATGGAC
** *
58333315 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGAAATGGTCTCGGGTAT
1 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGAAACAGTCTCGGGTAC
58333380 GGGGTGTTACAATTTTATTTGG
66 GGGGTGTTACAATTTTATTTGG
*
58333402 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACAGTCTCGGGTAC
1 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGAAACAGTCTCGGGTAC
58333467 GGGGTGTTACAATTTTATT
66 GGGGTGTTACAATTTTATT
58333486 GGTATCAGAG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 80 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (87 bp):
TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGAAACAGTCTCGGGTAC
GGGGTGTTACAATTTTATTTGG
Found at i:58339812 original size:11 final size:11
Alignment explanation
Indices: 58339796--58339821 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
58339786 TTGATATTCG
58339796 GATATTCGGAT
1 GATATTCGGAT
58339807 GATATTCGGAT
1 GATATTCGGAT
58339818 GATA
1 GATA
58339822 ACCGGGCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (11 bp):
GATATTCGGAT
Found at i:58340021 original size:40 final size:40
Alignment explanation
Indices: 58339819--58340007 Score: 254
Period size: 40 Copynumber: 4.7 Consensus size: 40
58339809 TATTCGGATG
* * * *
58339819 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * *
58339859 A-ATTTCGGGCTAAGTCCTGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
58339899 ATAACCGGGCTAAGTCCCGAAGGCATTTATGGGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58339939 TTAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
58339979 ATAACCGGGCTAAGTCCCGAAAGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
58340008 AGCAAGTAGC
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:58341451 original size:87 final size:87
Alignment explanation
Indices: 58341321--58341481 Score: 295
Period size: 87 Copynumber: 1.9 Consensus size: 87
58341311 TAAAATGGAC
*
58341321 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGCAATGGTCTCGGGTAC
1 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGTCTCGGGTAC
58341386 GGGGTGTTAAAATTTTATTTGG
66 GGGGTGTTAAAATTTTATTTGG
*
58341408 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGTAACGGTCTCGGGTAC
1 TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGTCTCGGGTAC
*
58341473 GTGGTGTTA
66 GGGGTGTTA
58341482 CAAACGAGGT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 71 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (87 bp):
TGTGAAAATAAATGAAATGAGTCCGTAAATACCTCGTGTTCGACTCCGGCAACGGTCTCGGGTAC
GGGGTGTTAAAATTTTATTTGG
Found at i:58345189 original size:60 final size:60
Alignment explanation
Indices: 58345113--58345244 Score: 162
Period size: 60 Copynumber: 2.2 Consensus size: 60
58345103 ACTGGACCTC
58345113 AGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGT-ATCAGAGTATATTGGGCCT
1 AGCCCATATCAATATTAATCTGGGCCATAGCCCTCTTACGAGTCA--AGA-TATATTGGGCCT
* * * * *
58345173 AGCCCATATCAGTATTAATCTGGGTCGTCGCCCTGTTACGAGTCAAGATATATTGGGCCT
1 AGCCCATATCAATATTAATCTGGGCCATAGCCCTCTTACGAGTCAAGATATATTGGGCCT
*
58345233 TGCCCATATCAA
1 AGCCCATATCAA
58345245 CACAGTTGGG
Statistics
Matches: 62, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
60 51 0.82
61 7 0.11
62 3 0.05
63 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (60 bp):
AGCCCATATCAATATTAATCTGGGCCATAGCCCTCTTACGAGTCAAGATATATTGGGCCT
Found at i:58345901 original size:8 final size:8
Alignment explanation
Indices: 58345888--58345927 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
58345878 TCACAAATGC
58345888 CGGCTTTT
1 CGGCTTTT
58345896 CGGCTTTT
1 CGGCTTTT
*
58345904 CAGCTTTT
1 CGGCTTTT
58345912 CGGCTTTT
1 CGGCTTTT
*
58345920 CGACTTTT
1 CGGCTTTT
58345928 ACCGATCTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.05, C:0.25, G:0.20, T:0.50
Consensus pattern (8 bp):
CGGCTTTT
Found at i:58350546 original size:21 final size:22
Alignment explanation
Indices: 58350500--58350549 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
58350490 TGCTGGGCTC
**
58350500 ACACGCCTGTGTGGTCCAAGGG
1 ACACGCCTGTGTGACCCAAGGG
*
58350522 ACACGCCTGTGTGACCCTA-GG
1 ACACGCCTGTGTGACCCAAGGG
58350543 ACACGCC
1 ACACGCC
58350550 CGTGCTAGAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 9 0.36
22 16 0.64
ACGTcount: A:0.20, C:0.34, G:0.30, T:0.16
Consensus pattern (22 bp):
ACACGCCTGTGTGACCCAAGGG
Found at i:58355465 original size:25 final size:23
Alignment explanation
Indices: 58355385--58355467 Score: 91
Period size: 22 Copynumber: 3.6 Consensus size: 23
58355375 GCACTATTAT
* *
58355385 ACAGAGAGCATTAAAGTGCTAT-
1 ACAGAGAGCACTAATGTGCTATA
58355407 ACAGAGAGCAC-AGATGTGCTA-A
1 ACAGAGAGCACTA-ATGTGCTATA
*
58355429 ACGGAGAGCACTAATGTGCTAATA
1 ACAGAGAGCACTAATGTGCT-ATA
58355453 ATCAGAGAGCACTAA
1 A-CAGAGAGCACTAA
58355468 CGTACTAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
21 1 0.02
22 34 0.67
23 2 0.04
24 2 0.04
25 12 0.24
ACGTcount: A:0.41, C:0.17, G:0.24, T:0.18
Consensus pattern (23 bp):
ACAGAGAGCACTAATGTGCTATA
Found at i:58355475 original size:25 final size:25
Alignment explanation
Indices: 58355432--58355481 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
58355422 GTGCTAAACG
* *
58355432 GAGAGCACTAATGTGCTAATAATCA
1 GAGAGCACTAACGTACTAATAATCA
58355457 GAGAGCACTAACGTACTAATAATCA
1 GAGAGCACTAACGTACTAATAATCA
58355482 AATAGGGCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (25 bp):
GAGAGCACTAACGTACTAATAATCA
Found at i:58355884 original size:7 final size:7
Alignment explanation
Indices: 58355872--58355898 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
58355862 CATACACATA
58355872 ATTTAAC
1 ATTTAAC
58355879 ATTTAAC
1 ATTTAAC
58355886 ATTTAAC
1 ATTTAAC
58355893 ATTTAA
1 ATTTAA
58355899 TAATGAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTTAAC
Found at i:58366029 original size:21 final size:21
Alignment explanation
Indices: 58366003--58366046 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
58365993 TTAACATTAA
58366003 ATTTACTTTATTAACAAAACC
1 ATTTACTTTATTAACAAAACC
*
58366024 ATTTACTTTATTAACAGAACC
1 ATTTACTTTATTAACAAAACC
58366045 AT
1 AT
58366047 GAAAAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (21 bp):
ATTTACTTTATTAACAAAACC
Found at i:58366992 original size:2 final size:2
Alignment explanation
Indices: 58366985--58367025 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
58366975 AAATTTATTA
58366985 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
58367026 AAGTAAACTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:58367191 original size:14 final size:14
Alignment explanation
Indices: 58367172--58367230 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
58367162 CCAGAAAAGT
58367172 AAATCATTTTCCAG
1 AAATCATTTTCCAG
* *
58367186 AAATCATTTTCTAAA
1 AAATCATTTTC-CAG
* *
58367201 AAATTATTTTTCAG
1 AAATCATTTTCCAG
*
58367215 AAATTATTTTCC-G
1 AAATCATTTTCCAG
58367228 AAA
1 AAA
58367231 AATATTTTAC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
13 4 0.11
14 23 0.62
15 10 0.27
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:58367204 original size:29 final size:28
Alignment explanation
Indices: 58367172--58367238 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
58367162 CCAGAAAAGT
*
58367172 AAATCATTTTCCAGAAATCATTTTCTAAA
1 AAAT-ATTTTCCAGAAATCATTTTCCAAA
* * *
58367201 AAATTATTTTTCAGAAATTATTTTCCGAA
1 AAA-TATTTTCCAGAAATCATTTTCCAAA
58367230 AAATATTTT
1 AAATATTTT
58367239 ACCTGCAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 6 0.18
29 26 0.79
30 1 0.03
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.43
Consensus pattern (28 bp):
AAATATTTTCCAGAAATCATTTTCCAAA
Found at i:58369443 original size:13 final size:13
Alignment explanation
Indices: 58369425--58369486 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
58369415 TTTGGTAATA
58369425 CTTTTAAAAAGTG
1 CTTTTAAAAAGTG
58369438 CTTTTAAAAAGTG
1 CTTTTAAAAAGTG
**
58369451 -TTGTGGAAAAGTG
1 CTT-TTAAAAAGTG
* * *
58369464 TTTTTGAGAAGTG
1 CTTTTAAAAAGTG
58369477 CTTTTGAAAA
1 CTTTT-AAAA
58369487 TTTTAGGTGT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 2 0.05
13 33 0.85
14 4 0.10
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (13 bp):
CTTTTAAAAAGTG
Found at i:58369485 original size:26 final size:26
Alignment explanation
Indices: 58369425--58369486 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
58369415 TTTGGTAATA
*
58369425 CTTTTAAAAAGTGCTTTTAAAAAGTG
1 CTTTTGAAAAGTGCTTTTAAAAAGTG
* * * *
58369451 -TTGTGGAAAAGTGTTTTTGAGAAGTG
1 CTT-TTGAAAAGTGCTTTTAAAAAGTG
58369477 CTTTTGAAAA
1 CTTTTGAAAA
58369487 TTTTAGGTGT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
25 2 0.07
26 24 0.86
27 2 0.07
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (26 bp):
CTTTTGAAAAGTGCTTTTAAAAAGTG
Found at i:58370162 original size:13 final size:13
Alignment explanation
Indices: 58370141--58370170 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
58370131 GGCCAACCAA
*
58370141 ACTTTTCAAAAGC
1 ACTTATCAAAAGC
58370154 ACTTATCAAAAGC
1 ACTTATCAAAAGC
58370167 ACTT
1 ACTT
58370171 TTTCACAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTATCAAAAGC
Found at i:58370632 original size:28 final size:30
Alignment explanation
Indices: 58370601--58370662 Score: 74
Period size: 28 Copynumber: 2.1 Consensus size: 30
58370591 TTCCTTTTTC
* *
58370601 AAATAAATTTATTTTTTA-AAAAC-CCCTA
1 AAATAAATTTATTTTTAACAAAACTCCATA
* *
58370629 AAATTAATTTCTTTTTAACAAAACTCCATA
1 AAATAAATTTATTTTTAACAAAACTCCATA
58370659 AAAT
1 AAAT
58370663 TTATATAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 15 0.54
29 5 0.18
30 8 0.29
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.39
Consensus pattern (30 bp):
AAATAAATTTATTTTTAACAAAACTCCATA
Found at i:58377897 original size:24 final size:24
Alignment explanation
Indices: 58377861--58377947 Score: 156
Period size: 24 Copynumber: 3.6 Consensus size: 24
58377851 AATCTCAAAT
58377861 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
* *
58377885 GCATTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTTACTATG
58377909 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
58377933 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
58377948 ACATAATAAG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 59 1.00
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:58377913 original size:48 final size:48
Alignment explanation
Indices: 58377861--58377969 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
58377851 AATCTCAAAT
* ** *
58377861 GCACTATGTGTGCGATTTACTATGGCATTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATA-A
58377909 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
58377957 GCACTATGTGTGC
1 GCACTATGTGTGC
58377970 AACGTTTGGT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 51 0.91
49 5 0.09
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (48 bp):
GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:58384763 original size:13 final size:13
Alignment explanation
Indices: 58384747--58384774 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
58384737 ATCCCACCCT
58384747 AAAATAGATACAG
1 AAAATAGATACAG
58384760 AAAATAGATACAG
1 AAAATAGATACAG
58384773 AA
1 AA
58384775 TTTACAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.07, G:0.14, T:0.14
Consensus pattern (13 bp):
AAAATAGATACAG
Found at i:58392127 original size:23 final size:22
Alignment explanation
Indices: 58392096--58392140 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
58392086 TCCTAGATAT
58392096 AGGGCACACATGCCCTTGTGGTCC
1 AGGGCACAC--GCCCTTGTGGTCC
58392120 AGGG-ACACGCCCTTGTGGTCC
1 AGGGCACACGCCCTTGTGGTCC
58392141 TAAGACACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 13 0.62
23 4 0.19
24 4 0.19
ACGTcount: A:0.16, C:0.33, G:0.31, T:0.20
Consensus pattern (22 bp):
AGGGCACACGCCCTTGTGGTCC
Found at i:58392147 original size:21 final size:21
Alignment explanation
Indices: 58392107--58392149 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
58392097 GGGCACACAT
*
58392107 GCCCTTGTGGTCCAGGGACAC
1 GCCCTTGTGGTCCAGAGACAC
58392128 GCCCTTGTGGTCCTA-AGACAC
1 GCCCTTGTGGTCC-AGAGACAC
58392149 G
1 G
58392150 TCTGTGCTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.16, C:0.33, G:0.30, T:0.21
Consensus pattern (21 bp):
GCCCTTGTGGTCCAGAGACAC
Found at i:58394624 original size:40 final size:40
Alignment explanation
Indices: 58394558--58394724 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
58394548 AAATTGAATG
* * *
58394558 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
58394597 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
58394637 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * *
58394677 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAT-GTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-TGGTAATT
58394717 ATATCCGG
1 ATATCCGG
58394725 TTATATTCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:58400224 original size:38 final size:40
Alignment explanation
Indices: 58400140--58400269 Score: 203
Period size: 40 Copynumber: 3.3 Consensus size: 40
58400130 CGTCCTCGAN
* * *
58400140 GACTTAGCCCGG-ATATAGTAACTCGTACAAATGCCTTCGG
1 GACTTAGCCCGGAAT-TAGTCACTAGCACAAATGCCTTCGG
58400180 GACTTAGCCCGGAATTAGTCAC-AGCACAAATG-CTTCGG
1 GACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGG
58400218 GACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGG
1 GACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGG
58400258 GACTTAGCCCGG
1 GACTTAGCCCGG
58400270 TTACCATCGA
Statistics
Matches: 84, Mismatches: 3, Indels: 6
0.90 0.03 0.06
Matches are distributed among these distances:
38 28 0.33
39 18 0.21
40 36 0.43
41 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.24, T:0.22
Consensus pattern (40 bp):
GACTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGG
Found at i:58403594 original size:40 final size:39
Alignment explanation
Indices: 58403528--58403692 Score: 147
Period size: 40 Copynumber: 4.2 Consensus size: 39
58403518 AAATTGAATG
* *
58403528 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* * * **
58403567 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
* *
58403607 ACATCCGGGCTAAGACCCGAAGGC-ATTCG-TGCGAGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTTGCTG-GAGATT
* * ** *
58403645 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-TGCTGGAGATT
58403685 ATATCCGG
1 ATATCCGG
58403693 TTATATTCCG
Statistics
Matches: 98, Mismatches: 23, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
37 1 0.01
38 26 0.27
39 18 0.18
40 53 0.54
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTTGCTGGAGATT
Found at i:58403660 original size:38 final size:38
Alignment explanation
Indices: 58403529--58403676 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 38
58403519 AATTGAATGA
* * * *
58403529 TATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATTA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGATTC
* * *
58403568 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGAT-TC
58403606 TACATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGATTC
1 T--ATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGATTC
*
58403646 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
58403677 ACGTGATTAT
Statistics
Matches: 91, Mismatches: 11, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
37 1 0.01
38 28 0.31
39 17 0.19
40 44 0.48
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGATTC
Found at i:58403691 original size:78 final size:78
Alignment explanation
Indices: 58403528--58403692 Score: 192
Period size: 78 Copynumber: 2.1 Consensus size: 78
58403518 AAATTGAATG
*
58403528 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGC-GGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
58403593 TTGTGCTAGTGGCT
65 TTGTGCTAGTGACT
* * * * *
58403607 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCA
* *
58403670 TTTGTGC-ACGTGATT
64 ATTGTGCTA-GTGACT
58403685 ATATCCGG
1 ATATCCGG
58403693 TTATATTCCG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
77 1 0.01
78 45 0.62
79 16 0.22
80 11 0.15
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (78 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCGGAAATTATATCCGGGCTAAGACCCGAAGGCAAT
TGTGCTAGTGACT
Found at i:58420826 original size:3 final size:3
Alignment explanation
Indices: 58420820--58420869 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
58420810 TAATAATAAT
58420820 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
58420868 AA
1 AA
58420870 TAATAATAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:58421096 original size:3 final size:3
Alignment explanation
Indices: 58421081--58421119 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
58421071 ACAACATCAT
*
58421081 TAA TAA GAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
58421120 AGTAAAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:58423882 original size:24 final size:24
Alignment explanation
Indices: 58423850--58423945 Score: 113
Period size: 24 Copynumber: 3.8 Consensus size: 24
58423840 TGTCATTGTG
58423850 CTAAGTGAAATAAGACCATGACAT
1 CTAAGTGAAATAAGACCATGACAT
*
58423874 CTAAGTGAAATAAGTCCAT-AGCAATGT
1 CTAAGTGAAATAAGACCATGA-C-A--T
*
58423901 GCTAAGTGAAATAAGACCATGGCAT
1 -CTAAGTGAAATAAGACCATGACAT
*
58423926 CTAAGTGAAATAAGTCCATG
1 CTAAGTGAAATAAGACCATG
58423946 GCAATGTGCT
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
23 1 0.02
24 38 0.61
25 2 0.03
27 2 0.03
28 19 0.31
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.23
Consensus pattern (24 bp):
CTAAGTGAAATAAGACCATGACAT
Found at i:58423914 original size:28 final size:28
Alignment explanation
Indices: 58423846--58423989 Score: 171
Period size: 28 Copynumber: 5.4 Consensus size: 28
58423836 GATATGTCAT
* *
58423846 TGTGCTAAGTGAAATAAGACCATGAC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
58423873 --T-CTAAGTGAAATAAGTCCATAGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
58423898 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
58423925 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
58423950 TGTGCTAAGTGAAATAAGTCCACGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
58423977 TGGTGCTAAGTGA
1 T-GTGCTAAGTGA
58423990 GAAATTTCCC
Statistics
Matches: 101, Mismatches: 7, Indels: 17
0.81 0.06 0.14
Matches are distributed among these distances:
24 40 0.40
25 4 0.04
27 5 0.05
28 52 0.51
ACGTcount: A:0.38, C:0.15, G:0.24, T:0.24
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:58423977 original size:52 final size:52
Alignment explanation
Indices: 58423846--58423977 Score: 228
Period size: 52 Copynumber: 2.5 Consensus size: 52
58423836 GATATGTCAT
*
58423846 TGTGCTAAGTGAAATAAGACCATGACATCTAAGTGAAATAAGTCCATAGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATAGCAA
*
58423898 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATAGCAA
* *
58423950 TGTGCTAAGTGAAATAAGTCCACGGCAT
1 TGTGCTAAGTGAAATAAGACCATGGCAT
58423978 GGTGCTAAGT
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 76 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (52 bp):
TGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCCATAGCAA
Found at i:58427254 original size:14 final size:14
Alignment explanation
Indices: 58427235--58427262 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
58427225 GTTTAGATCA
58427235 AGAACCAAAGAAAT
1 AGAACCAAAGAAAT
58427249 AGAACCAAAGAAAT
1 AGAACCAAAGAAAT
58427263 CGGATTTGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.14, T:0.07
Consensus pattern (14 bp):
AGAACCAAAGAAAT
Found at i:58431752 original size:43 final size:43
Alignment explanation
Indices: 58431702--58431786 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
58431692 ATGTGATTCT
*
58431702 GATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAGTGGCATC
1 GATATGTGGTTAC-ACGTAAGACCAC-GTCTGGGACAGTGGCATC
*
58431745 GATATGTGGTTACACGTAAGACCACGTCTGGGACATTGGCAT
1 GATATGTGGTTACACGTAAGACCACGTCTGGGACAGTGGCAT
58431787 TGTACGATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 1 0.03
43 36 0.95
44 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (43 bp):
GATATGTGGTTACACGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:58434138 original size:2 final size:2
Alignment explanation
Indices: 58434133--58434166 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
58434123 ATGATTGAGT
58434133 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
58434167 ATCTGAATCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:58438758 original size:16 final size:16
Alignment explanation
Indices: 58438737--58438769 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
58438727 CAAGATAATG
58438737 TGGTATTATCTTAGAA
1 TGGTATTATCTTAGAA
58438753 TGGTATTATCTTAGAA
1 TGGTATTATCTTAGAA
58438769 T
1 T
58438770 AGGCGTTGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (16 bp):
TGGTATTATCTTAGAA
Found at i:58440692 original size:26 final size:28
Alignment explanation
Indices: 58440650--58440703 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
58440640 TGTAATGTGT
*
58440650 TAAATTTTTGTAAA-GTGAATAAAAGAC
1 TAAATTTATGTAAAGGTGAATAAAAGAC
58440677 TAAATTTAT-TAAAGTGTGAATAAAAGA
1 TAAATTTATGTAAAG-GTGAATAAAAGA
58440704 ATCGAGACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 8 0.33
28 12 0.50
ACGTcount: A:0.50, C:0.02, G:0.15, T:0.33
Consensus pattern (28 bp):
TAAATTTATGTAAAGGTGAATAAAAGAC
Found at i:58446091 original size:20 final size:20
Alignment explanation
Indices: 58446068--58446112 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
58446058 AATTTTTTAT
*
58446068 TATTTAA-ATAAAATTAAATA
1 TATTTAATAGAAAATT-AATA
*
58446088 TATTTAATAGAAAATTTATA
1 TATTTAATAGAAAATTAATA
58446108 TATTT
1 TATTT
58446113 GAAAATTAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TATTTAATAGAAAATTAATA
Found at i:58446688 original size:3 final size:3
Alignment explanation
Indices: 58446680--58446720 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
58446670 AGAAAAAATG
58446680 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
58446721 GAAAAAAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:58458250 original size:30 final size:27
Alignment explanation
Indices: 58458216--58458279 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
58458206 CTTAACTAAA
*
58458216 AAAAGTTATAATTTAGTCTCTAAATTATTT
1 AAAAGTTATAATTTA---ACTAAATTATTT
* *
58458246 AAAAGTTTTCATTTAACTAAATTATTT
1 AAAAGTTATAATTTAACTAAATTATTT
58458273 AAAAGTT
1 AAAAGTT
58458280 TTTATACAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 18 0.58
30 13 0.42
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (27 bp):
AAAAGTTATAATTTAACTAAATTATTT
Found at i:58462971 original size:11 final size:11
Alignment explanation
Indices: 58462955--58462982 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
58462945 AGAATATTTC
58462955 AATAAAAAATA
1 AATAAAAAATA
58462966 AATAAAAAATA
1 AATAAAAAATA
58462977 AATAAA
1 AATAAA
58462983 CTCTTGGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (11 bp):
AATAAAAAATA
Found at i:58465400 original size:18 final size:18
Alignment explanation
Indices: 58465377--58465413 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
58465367 GACGATCCTC
*
58465377 TATCAAATAATTAATTAT
1 TATCAAACAATTAATTAT
58465395 TATCAAACAATTAATTAT
1 TATCAAACAATTAATTAT
58465413 T
1 T
58465414 CCCTCCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.43
Consensus pattern (18 bp):
TATCAAACAATTAATTAT
Found at i:58467907 original size:49 final size:48
Alignment explanation
Indices: 58467761--58467932 Score: 149
Period size: 49 Copynumber: 3.6 Consensus size: 48
58467751 AGATGCCGAC
* *
58467761 GCCATGTCCCAGACATGGTCTTACACTGGCTAG-CA-AATC-AAATCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCT-GTCATTATCGGAATCGAT
* * * * **
58467808 GCCATGTCCTAGACAGGTCTTACACTGACTTTCATATAT-TGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTGTCAT-TATCGGAATC-GAT
* *
58467857 GCCGTGTCCCAGACAGGTCTTACACTGGCTGTCATCTATCGGTATCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTGTCAT-TATCGGAATCGAT
58467906 GCCATGTCCCAAGTA-A-GTCTTACACTG
1 GCCATGTCCC-AG-ACAGGTCTTACACTG
58467933 ACACACAACA
Statistics
Matches: 100, Mismatches: 17, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
46 16 0.16
47 14 0.14
48 4 0.04
49 60 0.60
50 5 0.05
51 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (48 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTGTCATTATCGGAATCGAT
Found at i:58468098 original size:48 final size:47
Alignment explanation
Indices: 58467952--58468121 Score: 166
Period size: 48 Copynumber: 3.6 Consensus size: 47
58467942 AAGCTGACGC
* * **
58467952 CATGTACTAGACAAGTCTTACACTAGCTTGTATATCTCGAGGTTGATG
1 CATGTCCTAGACATGTCTTACACTAGC-TGTATATCTCGAGGCCGATG
* * * * * * *
58468000 CGTCTCCCAGACATGTCTTACACTAG-T-TCTCGTCTCAAAGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCTGTAT-ATCTCGAGGCCGATG
* *
58468046 CATGTCCTAGACATGTCTTATACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCTAGACATGTCTTACACTAGCT-GTATATCTCGAGGCCGATG
58468094 CATGTTCC-AGACATGTCTTACACTAGCT
1 CATG-TCCTAGACATGTCTTACACTAGCT
58468122 CTCGTAATGT
Statistics
Matches: 95, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
45 2 0.02
46 32 0.34
47 1 0.01
48 55 0.58
49 5 0.05
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (47 bp):
CATGTCCTAGACATGTCTTACACTAGCTGTATATCTCGAGGCCGATG
Found at i:58468140 original size:94 final size:94
Alignment explanation
Indices: 58467952--58468166 Score: 252
Period size: 94 Copynumber: 2.3 Consensus size: 94
58467942 AAGCTGACGC
* * * * ** *
58467952 CATGTACTAGACAAGTCTTACACTAGCTTGTATATCTCGAGGTTGATGCGTCTCCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATGCATCTCCCAGACATGTC
* *
58468017 TTACACTAGTTCTCGTCTCAAAGCCGATG
66 TTACACTAGCTCTCGTATCAAAGCCGATG
* * *
58468046 CATGTCCTAGACATGTCTTATACTGGCTGGTATATCTCGAGGCCGATGCATGTTCCAGACATGTC
1 CATGTCCTAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATGCATCTCCCAGACATGTC
*** *
58468111 TTACACTAGCTCTCGTAAT-GTGGCTGATG
66 TTACACTAGCTCTCGT-ATCAAAGCCGATG
* *
58468140 CATCTCCCAGACATGTCTTACACTGGC
1 CATGTCCTAGACATGTCTTACACTGGC
58468167 ACACATATCA
Statistics
Matches: 101, Mismatches: 19, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
94 100 0.99
95 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (94 bp):
CATGTCCTAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATGCATCTCCCAGACATGTC
TTACACTAGCTCTCGTATCAAAGCCGATG
Found at i:58470996 original size:18 final size:18
Alignment explanation
Indices: 58470973--58471008 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
58470963 TTCCTGGATG
58470973 GTAGTCGATTATCAACTC
1 GTAGTCGATTATCAACTC
**
58470991 GTAGTCTTTTATCAACTC
1 GTAGTCGATTATCAACTC
58471009 CAACCATCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (18 bp):
GTAGTCGATTATCAACTC
Found at i:58473266 original size:46 final size:46
Alignment explanation
Indices: 58473213--58473336 Score: 169
Period size: 46 Copynumber: 2.7 Consensus size: 46
58473203 TGATATGTGT
*
58473213 GCTAGTGTAAGACATGTTTGGGACATGCATCAGC-CACATTATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCTCACA-GATGAGA
* ***
58473259 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTTTGAGATGAGA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCTCACAGATGAGA
* *
58473305 GCTAGTGTAAGACATGTCTAGGACATGCATCA
1 GCTAGTGTAAGACATGTTTGGGACATGCATCA
58473337 ACTTCGAGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 68 0.99
47 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTTTGGGACATGCATCAGCTCACAGATGAGA
Found at i:58473346 original size:46 final size:46
Alignment explanation
Indices: 58473213--58473389 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
58473203 TGATATGTGT
* * ** *
58473213 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCCAC-ATTATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTTCGA-GATGAGA
* * * *
58473259 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCTTTGAGATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTTCGAGATGAGA
* * *
58473305 GCTAGTGTAAGACATGTCTAGGACATGCATCAACTTCGAGATATACAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTTCGAGAT-GA-GA
* * * *
58473353 ACTAGTGTAAGACCTGCCTAGGACATGGCGTCAGCTT
1 GCTAGTGTAAGACATGTCTAGGACAT-GCATCAGCTT
58473390 GTTGTGTGTT
Statistics
Matches: 110, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
46 76 0.69
47 2 0.02
48 24 0.22
49 8 0.07
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCTTCGAGATGAGA
Found at i:58473526 original size:49 final size:50
Alignment explanation
Indices: 58473400--58473526 Score: 159
Period size: 49 Copynumber: 2.6 Consensus size: 50
58473390 GTTGTGTGTT
* * *
58473400 GTGTAAAACCTATCTGGGACATGGCAT-TGACACCGATAAATGAGAGCCA
1 GTGTAAGACCTATCTGGGACATGGCATCGGACACCGATAAATGAAAGCCA
* * * *
58473449 GTGTAAGACCTATCTGGGACACGGCATCGGA-ATCGATATATGAAAGTCA
1 GTGTAAGACCTATCTGGGACATGGCATCGGACACCGATAAATGAAAGCCA
* *
58473498 GTGTAAGACCTCTCTGGGACATGACATCG
1 GTGTAAGACCTATCTGGGACATGGCATCG
58473527 ACTTTGATGT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
49 65 0.97
50 2 0.03
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.22
Consensus pattern (50 bp):
GTGTAAGACCTATCTGGGACATGGCATCGGACACCGATAAATGAAAGCCA
Found at i:58477190 original size:30 final size:30
Alignment explanation
Indices: 58477154--58477214 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
58477144 TCCTTAACTC
58477154 AAACTTTGGAAAAATTACAATTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
* * * * *
58477184 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGAAAAATTACAATTTTTCCCCT
58477214 A
1 A
58477215 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.05, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTTCCCCT
Found at i:58483320 original size:49 final size:48
Alignment explanation
Indices: 58483211--58483527 Score: 172
Period size: 49 Copynumber: 6.7 Consensus size: 48
58483201 GGGATAAGAT
* * ** * *
58483211 GCCGACGCCATGTCCCAAACATGGTCTTACACTGAC-TAGCACATCAAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTAATATATCAAG
* * *
58483259 GTCGATGTCATGTCCCAGATAGGTCTTACACTGACTTTAATATATCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGAC-TTAATATATCAAG
* * * * *
58483308 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTATC-GG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGACT-TAATATATCAAG
* * * *
58483356 TGTCGATGCCATGTCCCAGACAGGTCTTACATTGAC-TCACA-A-CAA-
1 -GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTAATATATCAAG
** * * * * *
58483401 GCTAACGCCATGTCTCAGACAGGTCTTACACT-AGCTTGTATATCTCGAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CTT-AATATATCAAG
* * * * ** * *
58483450 ACTGATG-CATGTCCCAGACATGTCATACACT-AGCTCT--CGTCTCAAA
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGA-CT-TAATATATCAAG
*
58483496 GCCGATG-CATGTCCCAGACATGTCTTACACTG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTG
58483528 GCTGGTATAT
Statistics
Matches: 209, Mismatches: 47, Indels: 27
0.74 0.17 0.10
Matches are distributed among these distances:
43 1 0.00
44 27 0.13
45 2 0.01
46 36 0.17
47 17 0.08
48 45 0.22
49 81 0.39
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGACTTAATATATCAAG
Found at i:58483381 original size:98 final size:97
Alignment explanation
Indices: 58483211--58483392 Score: 240
Period size: 98 Copynumber: 1.9 Consensus size: 97
58483201 GGGATAAGAT
*
58483211 GCCGACGCCATGTCCCAAACATGGTCTTACACTGACTAGCACATCAAAGTCGATGTCATGTCCCA
1 GCCGACGCCATGTCCCAAACATGGTCTTACACTGACTAGCACATCAAAGTCGATGCCATGTCCCA
*
58483276 GATAGGTCTTACACTGACTTTAATATATCAAG
66 GACAGGTCTTACACTGACTTTAATATATCAAG
* * * ** ***
58483308 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCC
1 GCCGACGCCATGTCCCAAACATGGTCTTACACTGACTAGCA-C-ATCAAAGTCGATGCCATGTCC
*
58483372 CAGACAGGTCTTACATTGACT
64 CAGACAGGTCTTACACTGACT
58483393 CACAACAAGC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
96 15 0.21
97 21 0.29
98 36 0.50
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (97 bp):
GCCGACGCCATGTCCCAAACATGGTCTTACACTGACTAGCACATCAAAGTCGATGCCATGTCCCA
GACAGGTCTTACACTGACTTTAATATATCAAG
Done.