Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 196 of 328
Found at i:58483480 original size:48 final size:48
Alignment explanation
Indices: 58483409--58483623 Score: 192
Period size: 46 Copynumber: 4.6 Consensus size: 48
58483399 AAGCTAACGC
* * *
58483409 CATGTCTCAGACAGGTCTTACACTAGCTTGTATATCTCGAGACTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGACCGATG
* * ** *
58483457 CATGTCCCAGACATGTCATACACTAGC-TCT-CGTCTC-AAAGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGA-CCGATG
* * *
58483503 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGACCGATG
** * * *
58483551 CAACTCCCAAACATGTCTTACACTAGCTCTCGTA-ATGT-G-G-CCTATG
1 CATGTCCCAGACATGTCTTACACTAGCT-T-GTATATCTCGAGACCGATG
* *
58483597 CATGTCACAGACATGTTTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
58483624 ACACGTATCA
Statistics
Matches: 133, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
45 2 0.02
46 61 0.46
47 4 0.03
48 59 0.44
49 4 0.03
50 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGACCGATG
Found at i:58483521 original size:94 final size:94
Alignment explanation
Indices: 58483409--58483623 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 94
58483399 AAGCTAACGC
* * * * ** *
58483409 CATGTCTCAGACAGGTCTTACACTAGCTTGTATATCTCGAGACTGATGCATGTCCCAGACATGTC
1 CATGTCACAGACATGTCTTACACTAGCTGGTATATCTCGAGACCGATGCAACTCCCAAACATGTC
*
58483474 ATACACTAGCTCTCGT-CTCAAAGCCGATG
66 ATACACTAGCTCTCGTAAT-AAAGCCGATG
* * *
58483503 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATGCAACTCCCAAACATGTC
1 CATGTCACAGACATGTCTTACACTAGCTGGTATATCTCGAGACCGATGCAACTCCCAAACATGTC
* *** *
58483568 TTACACTAGCTCTCGTAATGTGGCCTATG
66 ATACACTAGCTCTCGTAATAAAGCCGATG
*
58483597 CATGTCACAGACATGTTTTACACTAGC
1 CATGTCACAGACATGTCTTACACTAGC
58483624 ACACGTATCA
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
94 101 0.99
95 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (94 bp):
CATGTCACAGACATGTCTTACACTAGCTGGTATATCTCGAGACCGATGCAACTCCCAAACATGTC
ATACACTAGCTCTCGTAATAAAGCCGATG
Found at i:58486061 original size:39 final size:39
Alignment explanation
Indices: 58486007--58486149 Score: 232
Period size: 39 Copynumber: 3.6 Consensus size: 39
58485997 AATGTTCGAG
58486007 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* *
58486046 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
* *
58486085 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
*
58486124 TGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
58486150 CTTTGTGCGG
Statistics
Matches: 96, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 87 0.91
40 9 0.09
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAGTTA
Found at i:58489246 original size:46 final size:46
Alignment explanation
Indices: 58489194--58489364 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 46
58489184 ATTTGGGCAT
*
58489194 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
* *** * *
58489240 CCGAACTCATTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--C
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGC
*
58489287 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
*
58489333 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTT
58489365 CTGGGCGGGT
Statistics
Matches: 104, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
Found at i:58489358 original size:93 final size:93
Alignment explanation
Indices: 58489189--58489360 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
58489179 AGGATATTTG
* *
58489189 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCACCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
58489254 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
58489282 GGCACCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCACCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
58489347 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
58489361 ACTTCTGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCACCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:58492372 original size:15 final size:15
Alignment explanation
Indices: 58492336--58492415 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
58492326 GTATCTTGGG
* *
58492336 TTTCTTTATCCTAGA
1 TTTCTTTATTCTGGA
*
58492351 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
58492366 TTCCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
58492381 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
58492396 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
58492410 TTTCTT
1 TTTCTT
58492416 ATTATCTTTG
Statistics
Matches: 52, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
14 10 0.19
15 40 0.77
16 2 0.04
ACGTcount: A:0.11, C:0.19, G:0.12, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:58494558 original size:46 final size:44
Alignment explanation
Indices: 58494505--58494680 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 44
58494495 TATTTGGGCA
58494505 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
*** * *
58494551 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGAAG
*
58494598 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAA-G
* *
58494644 -CCCAAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
58494681 GTGGGTTACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 63 0.58
47 32 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAG
Found at i:58494660 original size:93 final size:93
Alignment explanation
Indices: 58494501--58494672 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
58494491 AGGATATTTG
* *
58494501 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
58494566 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
58494594 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGA
*
58494658 GTTGAGTCTGAGTTC
65 GTTGAGTCCGAGTTC
58494673 ACTTATGGGT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:58505080 original size:40 final size:40
Alignment explanation
Indices: 58505025--58505234 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
58505015 AACATTGGAA
58505025 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
58505065 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
58505105 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
58505145 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
58505184 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
58505225 CTATATCCGG
1 ATATATCCGG
58505235 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:58513217 original size:40 final size:40
Alignment explanation
Indices: 58513162--58513371 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
58513152 AACATTGGAA
58513162 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
58513202 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
58513242 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
58513282 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
58513321 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
58513362 CTATATCCGG
1 ATATATCCGG
58513372 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:58522627 original size:7 final size:7
Alignment explanation
Indices: 58522617--58522649 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
58522607 AAGAGAGAAT
58522617 GATGAGG
1 GATGAGG
58522624 GATGAGG
1 GATGAGG
58522631 GATGAGG
1 GATGAGG
58522638 GATGAGG
1 GATGAGG
58522645 GATGA
1 GATGA
58522650 TTAGGAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.30, C:0.00, G:0.55, T:0.15
Consensus pattern (7 bp):
GATGAGG
Found at i:58531614 original size:40 final size:38
Alignment explanation
Indices: 58531570--58531712 Score: 133
Period size: 40 Copynumber: 3.6 Consensus size: 38
58531560 CTGAAAATTT
* *
58531570 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAG-TA
* *
58531610 TATCCAGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTA
1 TATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAG-TA
* * * *
58531650 AATCCGGGCTAAGACCCGAAGGCGTTTGTGCAAATCGTGA
1 TATCCGGGCTAAGACCCGAAGGC-ATTGTGCAAGTAGT-A
* * *
58531690 TATCCGGGTTAAGTCCCGTAGGC
1 TATCCGGGCTAAGACCCGAAGGC
58531713 CTTGGTGCGG
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 4 0.05
40 80 0.93
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (38 bp):
TATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAGTA
Found at i:58533319 original size:27 final size:27
Alignment explanation
Indices: 58533285--58533727 Score: 218
Period size: 27 Copynumber: 16.3 Consensus size: 27
58533275 TCCTCAGTTG
* *
58533285 TAAAATTACCAAAGTACCCTCGGTTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* *
58533312 TAAAATTACCCAAA-TATCCTCGATTTG
1 TAAAATTA-CCAAATTACCCTCGATTTA
* * *
58533339 TAAAGTTATCGAAA-TACCCTC-AGTTTG
1 TAAAATTA-CCAAATTACCCTCGA-TTTA
* ** ** *
58533366 CAAAATTATTGAAA-TACCCTCGACATG
1 TAAAATTA-CCAAATTACCCTCGATTTA
* *
58533393 TAAAATTATCAAAGTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* **
58533420 CAAAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * ****
58533447 CAGAGTTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * **
58533474 CAAAATTACTATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
**
58533501 -AAGAATTACC-GTTCTACCCTCGATTTA
1 TAA-AATTACCAAAT-TACCCTCGATTTA
* **
58533528 TAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * **
58533555 GAGAATTACCATTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
* * * * *
58533582 GAAAATTACTAAAATACCC-CTGGTTTG
1 TAAAATTACCAAATTACCCTC-GATTTA
* * * *
58533609 TAAAATTACTAAAATACCCCCTGATTTG
1 TAAAATTACCAAATTACCCTC-GATTTA
* * *
58533637 TAAAATTACTGAAA-TACCCTCGACTGA
1 TAAAATTAC-CAAATTACCCTCGATTTA
* *
58533664 TAAAAGTTACCAAAGTACCGTCGATTTA
1 TAAAA-TTACCAAATTACCCTCGATTTA
* ****
58533692 TAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCAAATTACCCTCGATTTA
*
58533719 TAGAATTAC
1 TAAAATTAC
58533728 TGTTTTACCC
Statistics
Matches: 344, Mismatches: 59, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
26 10 0.03
27 282 0.82
28 49 0.14
29 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (27 bp):
TAAAATTACCAAATTACCCTCGATTTA
Found at i:58533371 original size:54 final size:53
Alignment explanation
Indices: 58533254--58533429 Score: 185
Period size: 54 Copynumber: 3.3 Consensus size: 53
58533244 GAATACTTTA
* * * *
58533254 GTTTACCAAATTACTGAAATATCCTC-AGTTGTAAAATTACCAAAGTACCCTC
1 GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
* * * *
58533306 GGTTTATAAAATTACCCAAATATCCTCGATTTGTAAAGTTATCGAAA-TACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATC-AAAGTACCCTC
* ** * *
58533360 AGTTTGCAAAATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTC
1 -GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
58533414 GATTTACAAAATTACC
1 G-TTTACAAAATTACC
58533430 ATTTTACCCT
Statistics
Matches: 99, Mismatches: 20, Indels: 7
0.79 0.16 0.06
Matches are distributed among these distances:
53 26 0.26
54 70 0.71
55 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (53 bp):
GTTTACAAAATTACCGAAATATCCTCGACTTGTAAAATTATCAAAGTACCCTC
Found at i:58533454 original size:108 final size:107
Alignment explanation
Indices: 58533261--58533454 Score: 246
Period size: 108 Copynumber: 1.8 Consensus size: 107
58533251 TTAGTTTACC
* ** * *
58533261 AAATTACTGAAATATCCTCAGTTGTAAAATTACCAAAGTACCCTCGGTTTATAAAATTACCCAAA
1 AAATTACTGAAATACCCTCACATGTAAAATTACCAAAGTACCCTCGATTTACAAAATTACCCAAA
* **
58533326 TATCCTCGATTTGTAAAGTTATCGAAATACCCTCAGTTTGCA
66 TACCCTCGATTTACAAAGTTATCGAAATACCCTCAGTTTGCA
* *
58533368 AAATTATTGAAATACCCTCGACATGTAAAATTATCAAAGTACCCTCGATTTACAAAATTA-CCAT
1 AAATTACTGAAATACCCTC-ACATGTAAAATTACCAAAGTACCCTCGATTTACAAAATTACCCA-
** *
58533432 TTTACCCTCGATTTACAGAGTTA
64 AATACCCTCGATTTACAAAGTTA
58533455 CTGTTTTACC
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
107 20 0.28
108 52 0.72
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (107 bp):
AAATTACTGAAATACCCTCACATGTAAAATTACCAAAGTACCCTCGATTTACAAAATTACCCAAA
TACCCTCGATTTACAAAGTTATCGAAATACCCTCAGTTTGCA
Found at i:58533638 original size:28 final size:28
Alignment explanation
Indices: 58533583--58533655 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
58533573 CTCGATTTAG
*
58533583 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
58533610 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
*
58533638 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
58533656 TCGACTGATA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 15 0.35
28 28 0.65
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:58533728 original size:27 final size:27
Alignment explanation
Indices: 58533407--58533770 Score: 266
Period size: 27 Copynumber: 13.4 Consensus size: 27
58533397 ATTATCAAAG
* *
58533407 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTT
* * * *
58533434 TACCCTCGATTTACAGAGTTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTT
*
58533461 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTT
** *
58533488 TACCCTCGATTTA-AAGAATTACCGTTC
1 TACCCTCGATTTATAA-AATTACTATTT
* *
58533515 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTT
* * *
58533542 TACCCTCGATTTAGAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTT
* ***
58533569 TACCCTCGATTTAGAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTATTT
* * ***
58533596 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTATTT
* * **
58533623 TACCCCCTGATTTGTAAAATTACTGA-AA
1 TACCCTC-GATTTATAAAATTACT-ATTT
* * * ***
58533651 TACCCTCGACTGATAAAAGTTACCAAAG
1 TACCCTCGATTTATAAAA-TTACTATTT
* * *
58533679 TACCGTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTT
* *
58533706 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTT
* * * **
58533733 TACCCTTGACTTAAAAAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTT
58533760 TACCCTCGATT
1 TACCCTCGATT
58533771 GTGAAATTAC
Statistics
Matches: 284, Mismatches: 46, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 3 0.01
27 235 0.83
28 45 0.16
29 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.10, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTATTT
Found at i:58533805 original size:27 final size:27
Alignment explanation
Indices: 58533775--58534210 Score: 594
Period size: 27 Copynumber: 16.3 Consensus size: 27
58533765 TCGATTGTGA
* *
58533775 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * ** *
58533802 AATTACCAAAACACCCCTAGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
58533829 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
58533856 AATTACTAAAATA-CCCTAGTAAGGTAG
1 AATTACCGAAATACCCCT-GTAGGGTAG
58533883 AATTACCG-AATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58533909 AATTACCG-AATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58533935 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
58533962 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58533989 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58534016 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58534043 AATTACCGAAATTCCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58534070 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58534097 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
58534124 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
**
58534151 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58534178 AATTACCGAGATA-CCTTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
58534204 AATTACC
1 AATTACC
58534211 ATTTTGCCCC
Statistics
Matches: 365, Mismatches: 39, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
26 69 0.19
27 295 0.81
28 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:58534470 original size:27 final size:26
Alignment explanation
Indices: 58534432--58534483 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
58534422 GATGGAGCAA
*
58534432 TCTGGTGGCTTCACCACATATATCTGT
1 TCTGGTGACTTCACCACA-ATATCTGT
**
58534459 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCACCACAATATCTG
58534484 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCACCACAATATCTGT
Found at i:58534536 original size:67 final size:67
Alignment explanation
Indices: 58534428--58534633 Score: 376
Period size: 67 Copynumber: 3.1 Consensus size: 67
58534418 TATTGATGGA
*
58534428 GCAATCTGGTGGCTTCACCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCG
1 GCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCG
58534493 CT
66 CT
58534495 GCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCG
1 GCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCG
58534560 CT
66 CT
* * *
58534562 GCAATCAGGTGGCTTTGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAACCTCG
1 GCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCG
58534627 CT
66 CT
58534629 GCAAT
1 GCAAT
58534634 TTCTGTGGTG
Statistics
Matches: 135, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 135 1.00
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (67 bp):
GCAATCTGGTGGCTTCGCCACATATATCTGTTCTGGTGACTTCGTCACAATATCTGGCAGCCTCG
CT
Found at i:58534537 original size:27 final size:26
Alignment explanation
Indices: 58534499--58534550 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
58534489 CTCGCTGCAA
*
58534499 TCTGGTGGCTTCGCCACATATATCTGT
1 TCTGGTGACTTCGCCACA-ATATCTGT
*
58534526 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACTTCGCCACAATATCTG
58534551 GCAGCCTCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACTTCGCCACAATATCTGT
Found at i:58534745 original size:6 final size:6
Alignment explanation
Indices: 58534736--58534882 Score: 113
Period size: 6 Copynumber: 23.8 Consensus size: 6
58534726 TTGCATTCAC
*
58534736 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
58534785 -TTACCTA ATTTTG ATTCTG GTTCTG ATTCTG ATTCTG -TTACCTG ATACTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * * *
58534835 ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG GTTCTA ATTTTG ATTCT
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
58534883 AGTTATGATA
Statistics
Matches: 111, Mismatches: 18, Indels: 24
0.73 0.12 0.16
Matches are distributed among these distances:
5 8 0.07
6 87 0.78
7 10 0.09
8 6 0.05
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:58534767 original size:25 final size:25
Alignment explanation
Indices: 58534739--58534870 Score: 120
Period size: 25 Copynumber: 5.6 Consensus size: 25
58534729 CATTCACATT
58534739 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
*
58534764 CTGATTCTGATTCTGATT--CTGTTA
1 CTGATTCTGATTCTG-TTACCTGATA
* * *
58534788 CCTAATTTTGATTCTG------G-TT
1 -CTGATTCTGATTCTGTTACCTGATA
58534807 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTGATA
* *
58534832 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTGATA
*
58534857 CTGATTCTGGTTCT
1 CTGATTCTGATTCT
58534871 AATTTTGATT
Statistics
Matches: 88, Mismatches: 10, Indels: 18
0.76 0.09 0.16
Matches are distributed among these distances:
18 13 0.15
19 1 0.01
20 1 0.01
24 6 0.07
25 65 0.74
26 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTGATA
Found at i:58534771 original size:31 final size:31
Alignment explanation
Indices: 58534736--58534870 Score: 157
Period size: 31 Copynumber: 4.4 Consensus size: 31
58534726 TTGCATTCAC
*
58534736 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
**
58534767 ATTCTGATTCTGATTCTGTTACCTAATTTTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* **
58534798 ATTCTGGTTCTGATTCTGATT--CTGTTACCTG
1 ATTCTGATTCTGATTCTG-TTACCTAATA-CTG
* *
58534829 ATACTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
*
58534860 ATTCTGGTTCT
1 ATTCTGATTCT
58534871 AATTTTGATT
Statistics
Matches: 85, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
30 5 0.06
31 75 0.88
32 5 0.06
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:58534809 original size:37 final size:34
Alignment explanation
Indices: 58534736--58534846 Score: 129
Period size: 37 Copynumber: 3.2 Consensus size: 34
58534726 TTGCATTCAC
*
58534736 ATTCTGATTCTGATTCTGTTACC---TGATACTG
1 ATTCTGATTCTGATTCTGTTACCTATTGATTCTG
58534767 ATTCTGATTCTGATTCTGTTACCTAATTTTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCT-A--TTGATTCTG
*
58534804 GTTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACCT-AT--TGATTCTG
58534841 ATTCTG
1 ATTCTG
58534847 TTACCTAATT
Statistics
Matches: 68, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
31 23 0.34
35 1 0.01
37 44 0.65
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (34 bp):
ATTCTGATTCTGATTCTGTTACCTATTGATTCTG
Found at i:58534880 original size:62 final size:62
Alignment explanation
Indices: 58534762--58534908 Score: 208
Period size: 62 Copynumber: 2.4 Consensus size: 62
58534752 TGTTACCTGA
* * *
58534762 TACTGATTCTGATTCTGATTCTGTTACCTAATTTTGATTCTGGTTCTGATTCTGATTCT-GT
1 TACTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTAATTCTGATTCTAGT
*
58534823 TACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTAATTTTGATTCTAGT
1 TA-CTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTAATTCTGATTCTAGT
* * *
58534886 TA-TGATAATGTTTCTTATTCTGT
1 TACTGATACTGATTCTGATTCTGT
58534909 AATGGGTTAA
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
61 20 0.26
62 53 0.69
63 4 0.05
ACGTcount: A:0.19, C:0.16, G:0.15, T:0.50
Consensus pattern (62 bp):
TACTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGTTCTAATTCTGATTCTAGT
Found at i:58549792 original size:55 final size:55
Alignment explanation
Indices: 58549731--58549840 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 55
58549721 CGTTCTTTAT
* *
58549731 TGCTTTCATATTTTCTTTGTTCTATATTCTATCCATCTCTCTCTATTTTATAACA
1 TGCTTTCATATTTTCTTTATTCTATACTCTATCCATCTCTCTCTATTTTATAACA
* * * * *
58549786 TGCTTTCATATTTTCTTTATTCTTTACTCTCTTCGTCTCTCTTTATTTTATAACA
1 TGCTTTCATATTTTCTTTATTCTATACTCTATCCATCTCTCTCTATTTTATAACA
58549841 CGTTATCAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.18, C:0.22, G:0.04, T:0.56
Consensus pattern (55 bp):
TGCTTTCATATTTTCTTTATTCTATACTCTATCCATCTCTCTCTATTTTATAACA
Found at i:58560210 original size:34 final size:34
Alignment explanation
Indices: 58560172--58560239 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
58560162 ATTCATCACG
* *
58560172 TTGATCAAACAAGTGATACTCGCATCTTAACCTC
1 TTGATCAAACAAGTGACACTCGCATCCTAACCTC
* * * *
58560206 TTGATTAAACTATTGACACTTGCATCCTAACCTC
1 TTGATCAAACAAGTGACACTCGCATCCTAACCTC
58560240 GCCATCAACA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.32
Consensus pattern (34 bp):
TTGATCAAACAAGTGACACTCGCATCCTAACCTC
Found at i:58564705 original size:17 final size:17
Alignment explanation
Indices: 58564683--58564718 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
58564673 TTGGGATGTA
*
58564683 AACTCATCAGCATTATC
1 AACTCATAAGCATTATC
58564700 AACTCATAAGCATTATC
1 AACTCATAAGCATTATC
58564717 AA
1 AA
58564719 GACGAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.42, C:0.25, G:0.06, T:0.28
Consensus pattern (17 bp):
AACTCATAAGCATTATC
Found at i:58570007 original size:44 final size:44
Alignment explanation
Indices: 58569944--58570050 Score: 153
Period size: 44 Copynumber: 2.4 Consensus size: 44
58569934 TCGCATCCAT
* *
58569944 TCGGACCAACTCAACGAGCTCAGATGCTCGCATCCATA-ATGAGC
1 TCGGACCAACTCAACGAGCTCAGATGC-CGCATACATACATGAAC
*
58569988 TCGGACCAACTCAACGAGCTCAGATGCCTCATACATATCATGAAC
1 TCGGACCAACTCAACGAGCTCAGATGCCGCATACATA-CATGAAC
*
58570033 CCGGACCAACTCAACGAG
1 TCGGACCAACTCAACGAG
58570051 TTCGGATTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
43 8 0.14
44 27 0.47
45 22 0.39
ACGTcount: A:0.32, C:0.33, G:0.19, T:0.17
Consensus pattern (44 bp):
TCGGACCAACTCAACGAGCTCAGATGCCGCATACATACATGAAC
Found at i:58572202 original size:27 final size:27
Alignment explanation
Indices: 58572172--58572247 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 27
58572162 AAATAACTAA
*
58572172 AATACCCCCATAGGGTAAAATGACCGT
1 AATACCCCTATAGGGTAAAATGACCGT
** * * *
58572199 AATATGCCTATAAGGTATAATGACTGT
1 AATACCCCTATAGGGTAAAATGACCGT
* * *
58572226 AATTCCCTTGTAGGGTAAAATG
1 AATACCCCTATAGGGTAAAATG
58572248 GCTGTTAGTA
Statistics
Matches: 36, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.28
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCGT
Found at i:58572658 original size:2 final size:2
Alignment explanation
Indices: 58572651--58572682 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
58572641 CTAAGGCCGA
58572651 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58572683 CACTACTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58577069 original size:19 final size:19
Alignment explanation
Indices: 58577045--58577083 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
58577035 TTAATTATTT
* *
58577045 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
58577064 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
58577083 T
1 T
58577084 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:58585102 original size:27 final size:27
Alignment explanation
Indices: 58585067--58585232 Score: 207
Period size: 27 Copynumber: 6.1 Consensus size: 27
58585057 AGCATGACTG
* *
58585067 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
58585093 CCATATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
58585121 CCAGA-ACAAATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
58585148 CCAGAT-CAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
58585175 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
58585202 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
58585229 CCAG
1 CCAG
58585233 GACGCTTCCT
Statistics
Matches: 124, Mismatches: 7, Indels: 17
0.84 0.05 0.11
Matches are distributed among these distances:
26 7 0.06
27 99 0.80
28 18 0.15
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:58585126 original size:54 final size:54
Alignment explanation
Indices: 58585067--58585232 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
58585057 AGCATGACTG
* * *
58585067 CCAGAACAGATA-ATGTGACAGAGTCACCATATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
*
58585121 CCAGAACAAATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
* *
58585175 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
58585229 CCAG
1 CCAG
58585233 GACGCTTCCT
Statistics
Matches: 104, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
54 87 0.84
55 17 0.16
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:58586862 original size:26 final size:26
Alignment explanation
Indices: 58586832--58586887 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
58586822 TGAAATGCCC
58586832 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
58586858 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
58586884 ATCA
1 ATCA
58586888 ATTTTTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:58586894 original size:22 final size:23
Alignment explanation
Indices: 58586842--58586894 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 23
58586832 ATCATGGAAC
58586842 ATTTACCTAACCCATTATCATGGAAT
1 ATTTACCTAACCCATTATC---GAAT
58586868 ATTTACCTAACCCATTATC-AAT
1 ATTTACCTAACCCATTATCGAAT
*
58586890 TTTTA
1 ATTTA
58586895 TCAATTTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 7 0.27
26 19 0.73
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.40
Consensus pattern (23 bp):
ATTTACCTAACCCATTATCGAAT
Found at i:58589682 original size:49 final size:49
Alignment explanation
Indices: 58589615--58589731 Score: 139
Period size: 49 Copynumber: 2.4 Consensus size: 49
58589605 AGGAATTGGG
58589615 ATTT-TTTCATTCTACCATCCCAAATTACCCGACAATGA-TGACTTTTAGT
1 ATTTGTTT-ATTCTACCATCCCAAATTACCCGACAATGATTG-CTTTTAGT
* *** * * *
58589664 ATTTGTTTATTCTGCCATCCCGGGTTGCCCGGCAATGATTGTTTTTAGT
1 ATTTGTTTATTCTACCATCCCAAATTACCCGACAATGATTGCTTTTAGT
58589713 ATTTGTTTATTCTACCATC
1 ATTTGTTTATTCTACCATC
58589732 TTGGGTTGCC
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 53 0.91
50 5 0.09
ACGTcount: A:0.21, C:0.22, G:0.14, T:0.43
Consensus pattern (49 bp):
ATTTGTTTATTCTACCATCCCAAATTACCCGACAATGATTGCTTTTAGT
Found at i:58589759 original size:49 final size:49
Alignment explanation
Indices: 58589647--58589765 Score: 127
Period size: 49 Copynumber: 2.4 Consensus size: 49
58589637 AATTACCCGA
* **
58589647 CAATGAT-GACTTTTAGTATTTGTTTATTCTGCCATCCCGGGTTGCCCGG
1 CAATGATCG-CTTTTAGTATTTGTTTATTCTACCATCCCGGGTTGCCAAG
* * **
58589696 CAATGATTGTTTTTAGTATTTGTTTATTCTACCATCTTGGGTTGCCTAAG
1 CAATGATCGCTTTTAGTATTTGTTTATTCTACCATCCCGGGTTGCC-AAG
58589746 -AATGA-CGCCTTTTAGTATTT
1 CAATGATCG-CTTTTAGTATTT
58589766 TATTATCCTG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
48 1 0.02
49 56 0.95
50 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.19, T:0.44
Consensus pattern (49 bp):
CAATGATCGCTTTTAGTATTTGTTTATTCTACCATCCCGGGTTGCCAAG
Found at i:58594226 original size:50 final size:52
Alignment explanation
Indices: 58594169--58594270 Score: 163
Period size: 50 Copynumber: 2.0 Consensus size: 52
58594159 ATCTAAACCG
* *
58594169 CATAATAATTAACTATTTAAATTTAAAT-ATTTAATAAT-TTTCCTTAACAT
1 CATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTCCTTAACAT
*
58594219 CATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTTCTTAACAT
1 CATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTCCTTAACAT
58594271 TTCTAATTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 26 0.55
51 10 0.21
52 11 0.23
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (52 bp):
CATAATAATTAACTAATTAAAATTAAATAATTTAATAATATTTCCTTAACAT
Found at i:58594407 original size:28 final size:28
Alignment explanation
Indices: 58594357--58594433 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
58594347 AATCAAAGAG
* * * **
58594357 TTTAGAAAAAAAAATTAAAAATTGGGAA
1 TTTAGAATAAAAAATCAAGAATTGACAA
*
58594385 TTTAGAATAAAAAATCGAGAATTGACAA
1 TTTAGAATAAAAAATCAAGAATTGACAA
* *
58594413 TTGAGAATAAAACATCAAGAA
1 TTTAGAATAAAAAATCAAGAA
58594434 CAAACAATTG
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.57, C:0.05, G:0.14, T:0.23
Consensus pattern (28 bp):
TTTAGAATAAAAAATCAAGAATTGACAA
Found at i:58594460 original size:28 final size:29
Alignment explanation
Indices: 58594409--58594466 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
58594399 TCGAGAATTG
*
58594409 ACAATTGAGAATAAAACATCAAGAA-CAA
1 ACAATTGAGAACAAAACATCAAGAATCAA
*
58594437 ACAATTGAGAACAAGAA-ATTAAGAATCAA
1 ACAATTGAGAACAA-AACATCAAGAATCAA
58594466 A
1 A
58594467 TTGTGAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.16
Consensus pattern (29 bp):
ACAATTGAGAACAAAACATCAAGAATCAA
Found at i:58596087 original size:30 final size:30
Alignment explanation
Indices: 58596051--58596116 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
58596041 TTGAAAAGAG
58596051 TTAGAAAGTTTTAAAGCAAACTAACAATTT
1 TTAGAAAGTTTTAAAGCAAACTAACAATTT
58596081 TTAGAAAGTTTTAAAGCAAACTAACAATTT
1 TTAGAAAGTTTTAAAGCAAACTAACAATTT
58596111 TT-GAAA
1 TTAGAAA
58596117 CAGGGGTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.11
30 32 0.89
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (30 bp):
TTAGAAAGTTTTAAAGCAAACTAACAATTT
Found at i:58597403 original size:76 final size:76
Alignment explanation
Indices: 58597215--58597431 Score: 213
Period size: 76 Copynumber: 2.8 Consensus size: 76
58597205 GTGCCCAGTA
** * *
58597215 GATAAACCATAACAATGTTTTGCGCCCAGCACTAGTCGGATAAATAAAAGGTATCAAATGTGTGC
1 GATAAACC--AACAATGAATTGCACCCAACACTAGTCGGATAAATAAAAGGTATCAAATGTGTGC
*
58597280 TTAGCACCAGTCG
64 TTAGCACCAATCG
* ** * * **
58597293 GATAAACCAACAATGAATTACACCCAACGTTAGTCTGTTAAATCGAAGGTATCAAATGTGTGCTT
1 GATAAACCAACAATGAATTGCACCCAACACTAGTCGGATAAATAAAAGGTATCAAATGTGTGCTT
* *
58597358 AGCACTAATTG
66 AGCACCAATCG
* * * * *
58597369 GATAAACTGAA-AATGAGTTGCACCCAACACTAGTCGGATAGACT-AACGATATCAAATGTGTGC
1 GATAAAC-CAACAATGAATTGCACCCAACACTAGTCGGATA-AATAAAAGGTATCAAATGTGTGC
58597432 CTATCATTGT
Statistics
Matches: 112, Mismatches: 25, Indels: 6
0.78 0.17 0.04
Matches are distributed among these distances:
76 100 0.89
77 4 0.04
78 8 0.07
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (76 bp):
GATAAACCAACAATGAATTGCACCCAACACTAGTCGGATAAATAAAAGGTATCAAATGTGTGCTT
AGCACCAATCG
Found at i:58600409 original size:40 final size:41
Alignment explanation
Indices: 58600363--58600453 Score: 132
Period size: 40 Copynumber: 2.3 Consensus size: 41
58600353 GCGCCCAACG
* * *
58600363 CTAGTCGGATAAACT-GATGATATCAAATGTGTGCCTAGCA
1 CTAGTCGGATAAAATCAACGATATCAAATGTGTGCCTAGCA
58600403 CTAGTCGGA-AAAATCAACGATATCAAATGTGTGCCTAGCA
1 CTAGTCGGATAAAATCAACGATATCAAATGTGTGCCTAGCA
*
58600443 CTAGTTGGATA
1 CTAGTCGGATA
58600454 TACAAACAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
39 4 0.09
40 40 0.89
41 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (41 bp):
CTAGTCGGATAAAATCAACGATATCAAATGTGTGCCTAGCA
Found at i:58612023 original size:17 final size:18
Alignment explanation
Indices: 58611983--58612024 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
58611973 CCATTATGTT
58611983 ATTAAATAGACATTTAAA
1 ATTAAATAGACATTTAAA
* *
58612001 AATAAATATA-ATTTAAA
1 ATTAAATAGACATTTAAA
*
58612018 TTTAAAT
1 ATTAAAT
58612025 TATTAGTTAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (18 bp):
ATTAAATAGACATTTAAA
Found at i:58622604 original size:27 final size:27
Alignment explanation
Indices: 58622559--58622629 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 27
58622549 ATTCTTTAGC
*
58622559 ATTTTTATATATTTTTTAAAAATAT-AA
1 ATTTTTAAAT-TTTTTTAAAAATATAAA
* * *
58622586 ATTTTTAAATTTTTATTAATATTTTAAA
1 ATTTTTAAATTTTT-TTAAAAATATAAA
*
58622614 ATTTTTAAAATTTTTT
1 ATTTTTAAATTTTTTT
58622630 GTGAAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.11
27 18 0.49
28 15 0.41
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTTTTAAATTTTTTTAAAAATATAAA
Found at i:58622621 original size:9 final size:9
Alignment explanation
Indices: 58622584--58622628 Score: 56
Period size: 9 Copynumber: 4.9 Consensus size: 9
58622574 TTAAAAATAT
58622584 AAATTTTT-
1 AAATTTTTA
58622592 AAATTTTTA
1 AAATTTTTA
*
58622601 TTAATATTTTA
1 -AAAT-TTTTA
58622612 AAATTTTTA
1 AAATTTTTA
58622621 AAATTTTT
1 AAATTTTT
58622629 TGTGAAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 8 0.25
9 13 0.41
10 6 0.19
11 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
AAATTTTTA
Found at i:58622638 original size:13 final size:13
Alignment explanation
Indices: 58622620--58622644 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58622610 TAAAATTTTT
58622620 AAAATTTTTTGTG
1 AAAATTTTTTGTG
58622633 AAAATTTTTTGT
1 AAAATTTTTTGT
58622645 TGAGAGAGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
AAAATTTTTTGTG
Found at i:58626329 original size:43 final size:42
Alignment explanation
Indices: 58626257--58626366 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
58626247 ATATTACGTG
* * *
58626257 TAAGACAATATCTGGGATATGGCATCGATATGAGACTT-CGTC
1 TAAGACCATATCTGGGATATGGCATCGATACGAGA-TTACATC
* * *
58626299 TAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATACGAGATTACATC
58626342 TAAGACCATATCTGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
58626367 TAGTACGGTA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATACGAGATTACATC
Found at i:58629552 original size:21 final size:21
Alignment explanation
Indices: 58629528--58629576 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
58629518 TCAACACATG
*
58629528 GGCGTGTGGGATGGCCACACT
1 GGCGTGTGGGATGCCCACACT
58629549 GGCGTGTGGGATGCCCACACT
1 GGCGTGTGGGATGCCCACACT
58629570 GGCGTGT
1 GGCGTGT
58629577 AGATTAGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.12, C:0.24, G:0.43, T:0.20
Consensus pattern (21 bp):
GGCGTGTGGGATGCCCACACT
Found at i:58629587 original size:21 final size:20
Alignment explanation
Indices: 58629528--58629599 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
58629518 TCAACACATG
*
58629528 GGCGTGTGGGATGGCCACACT
1 GGCGTGTGAGAT-GCCACACT
*
58629549 GGCGTGTGGGATGCCCACACT
1 GGCGTGTGAGATG-CCACACT
58629570 GGCGTGT-AGATTAGCCACAC-
1 GGCGTGTGAGA-T-GCCACACT
58629590 GGCCGTGTGA
1 GG-CGTGTGA
58629600 CCCCTGTAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
20 5 0.11
21 38 0.84
22 2 0.04
ACGTcount: A:0.17, C:0.25, G:0.39, T:0.19
Consensus pattern (20 bp):
GGCGTGTGAGATGCCACACT
Found at i:58635043 original size:14 final size:14
Alignment explanation
Indices: 58635024--58635050 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58635014 AGAATATATT
58635024 TTTAATTAATTAAC
1 TTTAATTAATTAAC
58635038 TTTAATTAATTAA
1 TTTAATTAATTAA
58635051 AAATTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTAATTAATTAAC
Found at i:58644238 original size:2 final size:2
Alignment explanation
Indices: 58644231--58644267 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
58644221 ATTAGTATGT
58644231 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58644268 TAAAATAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:58646597 original size:17 final size:17
Alignment explanation
Indices: 58646575--58646608 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
58646565 GGTATAAGGC
58646575 GCATCTTGTAGCTAAAG
1 GCATCTTGTAGCTAAAG
58646592 GCATCTTGTAGCTAAAG
1 GCATCTTGTAGCTAAAG
58646609 TATATACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (17 bp):
GCATCTTGTAGCTAAAG
Found at i:58647327 original size:84 final size:84
Alignment explanation
Indices: 58647186--58647362 Score: 336
Period size: 84 Copynumber: 2.1 Consensus size: 84
58647176 ACAAGAGCTA
*
58647186 TATCAATAAAGTACTCAAAAAGTTTGCCATTCAAGGTTGTAGACCAAGTGACACCCTAATTGCTA
1 TATCAATAAAGTACTCAAAAAGTTTGCCATTCAAGGTTGTAGACCAAGTGACACCCTAATTACTA
58647251 AAGAAGACAAATTTAATCT
66 AAGAAGACAAATTTAATCT
58647270 TATCAATAAAGTACTCAAAAAGTTTGCCATTCAAGGTTGTAGACCAAGTGACACCCTAATTACTA
1 TATCAATAAAGTACTCAAAAAGTTTGCCATTCAAGGTTGTAGACCAAGTGACACCCTAATTACTA
58647335 AAGAAGACAAATTTAATCT
66 AAGAAGACAAATTTAATCT
58647354 TACTCAATA
1 TA-TCAATA
58647363 CCCTAAAAGT
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 85 0.93
85 6 0.07
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (84 bp):
TATCAATAAAGTACTCAAAAAGTTTGCCATTCAAGGTTGTAGACCAAGTGACACCCTAATTACTA
AAGAAGACAAATTTAATCT
Found at i:58651152 original size:2 final size:2
Alignment explanation
Indices: 58651145--58651177 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
58651135 ATAAAGAAAT
58651145 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
58651178 GTGGTCCAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:58654314 original size:46 final size:44
Alignment explanation
Indices: 58654255--58654369 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
58654245 ACAGGACAGA
* *
58654255 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
58654301 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
58654345 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
58654370 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:58654350 original size:44 final size:45
Alignment explanation
Indices: 58654255--58654388 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
58654245 ACAGGACAGA
* *
58654255 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
58654301 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
58654345 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
58654389 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:58660266 original size:46 final size:44
Alignment explanation
Indices: 58660207--58660321 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
58660197 ACAGGACAGA
* *
58660207 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
58660253 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
58660297 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
58660322 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:58660302 original size:44 final size:45
Alignment explanation
Indices: 58660207--58660340 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
58660197 ACAGGACAGA
* *
58660207 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
58660253 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
58660297 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
58660341 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:58665940 original size:40 final size:40
Alignment explanation
Indices: 58665885--58665973 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
58665875 AGTGACTTCA
* *
58665885 ATGTCTTTATTTGCAC-TTCAGTGCCTCTGTATACACTTTG
1 ATGTCTCTACTTGCACATT-AGTGCCTCTGTATACACTTTG
* * *
58665925 ATGTCTCTACTTGCACATTTGTGCCTCTGTTTGCACTTTG
1 ATGTCTCTACTTGCACATTAGTGCCTCTGTATACACTTTG
* *
58665965 GTGCCTCTA
1 ATGTCTCTA
58665974 TTATACATCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
40 39 0.95
41 2 0.05
ACGTcount: A:0.15, C:0.25, G:0.17, T:0.44
Consensus pattern (40 bp):
ATGTCTCTACTTGCACATTAGTGCCTCTGTATACACTTTG
Found at i:58665958 original size:20 final size:20
Alignment explanation
Indices: 58665894--58665972 Score: 70
Period size: 20 Copynumber: 4.0 Consensus size: 20
58665884 AATGTCTTTA
**
58665894 TTTGCACTTCAGTGCCTCTG
1 TTTGCACTTTGGTGCCTCTG
* * * * *
58665914 TATACACTTTGATGTCTCTA
1 TTTGCACTTTGGTGCCTCTG
*
58665934 CTTGCACATTT-GTGCCTCTG
1 TTTGCAC-TTTGGTGCCTCTG
58665954 TTTGCACTTTGGTGCCTCT
1 TTTGCACTTTGGTGCCTCT
58665973 ATTATACATC
Statistics
Matches: 43, Mismatches: 14, Indels: 4
0.70 0.23 0.07
Matches are distributed among these distances:
19 3 0.07
20 37 0.86
21 3 0.07
ACGTcount: A:0.13, C:0.27, G:0.18, T:0.43
Consensus pattern (20 bp):
TTTGCACTTTGGTGCCTCTG
Found at i:58677062 original size:93 final size:93
Alignment explanation
Indices: 58676950--58677121 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
58676940 CGCCCATAAG
* *
58676950 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
58677015 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
58677043 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
58677108 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
58677122 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:58677118 original size:46 final size:46
Alignment explanation
Indices: 58676943--58677118 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
58676933 TGTAACCCGC
* * *
58676943 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
58676989 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
58677039 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
58677082 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
58677119 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:58684184 original size:2 final size:2
Alignment explanation
Indices: 58684177--58684203 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
58684167 ACATGCGTAA
58684177 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
58684204 ATTATATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:58691897 original size:93 final size:93
Alignment explanation
Indices: 58691768--58691938 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
58691758 GCCCATAAGT
* * *
58691768 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
58691833 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* *
58691861 GAACTCGGACTCAACTTAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
58691926 CAAGTTCGGATGC
66 CAAGTTCGGATGC
58691939 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:58691935 original size:46 final size:46
Alignment explanation
Indices: 58691760--58691940 Score: 206
Period size: 46 Copynumber: 3.9 Consensus size: 46
58691750 TGTAACCCGC
* * * *
58691760 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
58691806 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * *
58691856 -C-TCA-CGAACTCGGACTCAACTTAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
58691899 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
58691941 AACCATCCTA
Statistics
Matches: 112, Mismatches: 16, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 69 0.62
47 31 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:58695047 original size:16 final size:17
Alignment explanation
Indices: 58695017--58695049 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
58695007 AAATTATATA
58695017 TTTACTTTAAGTATTTT
1 TTTACTTTAAGTATTTT
*
58695034 TTTA-TTTAATTATTTT
1 TTTACTTTAAGTATTTT
58695050 ATAACATGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.70
Consensus pattern (17 bp):
TTTACTTTAAGTATTTT
Found at i:58700701 original size:46 final size:46
Alignment explanation
Indices: 58700651--58700818 Score: 207
Period size: 46 Copynumber: 3.6 Consensus size: 46
58700641 TATTTGGGCA
58700651 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
58700697 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
* *
58700744 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
58700790 CCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
58700819 TTATGGGCGG
Statistics
Matches: 104, Mismatches: 11, Indels: 14
0.81 0.09 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 60 0.58
47 32 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:58700806 original size:93 final size:93
Alignment explanation
Indices: 58700647--58700818 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
58700637 TGGATATTTG
* *
58700647 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
58700712 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
58700740 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
58700805 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
58700819 TTATGGGCGG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:58703776 original size:15 final size:15
Alignment explanation
Indices: 58703737--58703814 Score: 74
Period size: 15 Copynumber: 5.4 Consensus size: 15
58703727 GTATCTTGGG
*
58703737 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
58703752 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
58703767 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
58703781 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
58703796 TTT-TTTATTC-GGT
1 TTTCTTTATTCTGGA
58703809 TTTCTT
1 TTTCTT
58703815 GTTATCTTTG
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 7 0.14
14 14 0.27
15 30 0.59
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:58706245 original size:46 final size:46
Alignment explanation
Indices: 58706178--58706345 Score: 194
Period size: 46 Copynumber: 3.6 Consensus size: 46
58706168 TAGTTGGGCA
58706178 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
* ** * * * *
58706224 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATGGATGCGA-GCG
* * *
58706271 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
* * *
58706317 CCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
58706346 GCTTATGGGC
Statistics
Matches: 100, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 64 0.64
47 36 0.36
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCG
Found at i:58706333 original size:93 final size:93
Alignment explanation
Indices: 58706174--58706346 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
58706164 GGGATAGTTG
* * * *
58706174 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
58706239 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
58706267 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
58706332 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
58706347 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:58709654 original size:13 final size:13
Alignment explanation
Indices: 58709636--58709660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58709626 TTGTAAATTT
58709636 TGTATCTGTTTTC
1 TGTATCTGTTTTC
58709649 TGTATCTGTTTT
1 TGTATCTGTTTT
58709661 GGGGTGGGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.16, T:0.64
Consensus pattern (13 bp):
TGTATCTGTTTTC
Found at i:58714108 original size:53 final size:54
Alignment explanation
Indices: 58714039--58714242 Score: 212
Period size: 53 Copynumber: 3.8 Consensus size: 54
58714029 TTCCTTTTTA
* * * * *
58714039 AACTTACCATTTCCATGTCTTAACATAGTCTTACATGGTATCTTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * * *
58714092 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
** * * * * * * *
58714146 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* *
58714201 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC
58714243 CTTAAACCCT
Statistics
Matches: 121, Mismatches: 28, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 45 0.37
54 35 0.29
55 41 0.34
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.38
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:58714182 original size:55 final size:53
Alignment explanation
Indices: 58714051--58714234 Score: 170
Period size: 55 Copynumber: 3.4 Consensus size: 53
58714041 CTTACCATTT
* * * *
58714051 CCATGTCTTAACATAGTCTTACATGGTATCTTTGCCTTATGAACTCACCATTG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATGAACTCACCAATG
* * ** * *
58714104 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTAT-G-AACTCACCAATG
*** * * * *
58714159 CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAAAACTTACCAATG
1 CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTAT-GAACTCACCAATG
* *
58714213 CCATGCCTTGGCATGGTCTTAC
1 CCATGTCTTGACATGGTCTTAC
58714235 TTGGTATCCT
Statistics
Matches: 106, Mismatches: 23, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
53 35 0.33
54 30 0.28
55 41 0.39
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CCATGTCTTGACATGGTCTTACATGGGATCTTTGCCTTATGAACTCACCAATG
Found at i:58714286 original size:36 final size:36
Alignment explanation
Indices: 58714239--58714309 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
58714229 TCTTACTTGG
58714239 TATCCTTAAACCCTAATGTCATGACATTTGTATCCA
1 TATCCTTAAACCCTAATGTCATGACATTTGTATCCA
58714275 TATCCTTAAACCCTAATGTCATGACATTTGTATCC
1 TATCCTTAAACCCTAATGTCATGACATTTGTATCC
58714310 TACACATTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (36 bp):
TATCCTTAAACCCTAATGTCATGACATTTGTATCCA
Found at i:58725637 original size:40 final size:40
Alignment explanation
Indices: 58725592--58725758 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
58725582 CGGAATATAA
58725592 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
58725632 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
58725672 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
58725712 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58725751 CCGGATAT
1 CCGGATAT
58725759 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58733631 original size:40 final size:40
Alignment explanation
Indices: 58733586--58733752 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
58733576 CGGAATATAA
58733586 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
58733626 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
58733666 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
58733706 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
58733745 CCGGATAT
1 CCGGATAT
58733753 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:58737263 original size:39 final size:39
Alignment explanation
Indices: 58737220--58737354 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
58737210 ACCAATATGG
*
58737220 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
58737259 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
58737297 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
58737338 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
58737355 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:58738892 original size:17 final size:17
Alignment explanation
Indices: 58738870--58738904 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
58738860 GAATGCTCTC
*
58738870 TGTTTCTTATTCTTCTT
1 TGTTTCTTATTATTCTT
*
58738887 TGTTTCTTTTTATTCTT
1 TGTTTCTTATTATTCTT
58738904 T
1 T
58738905 TTCTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCTTATTATTCTT
Found at i:58738974 original size:13 final size:13
Alignment explanation
Indices: 58738934--58738967 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58738924 ACATATATAT
* *
58738934 ATAATATTATTTA
1 ATAATAATAGTTA
58738947 ATAATAATAGTTA
1 ATAATAATAGTTA
58738960 ATAATAAT
1 ATAATAAT
58738968 TTATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATAATAATAGTTA
Found at i:58745050 original size:39 final size:39
Alignment explanation
Indices: 58745007--58745141 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
58744997 ACCAATATGG
*
58745007 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
58745046 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
58745084 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
58745125 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
58745142 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:58746681 original size:17 final size:17
Alignment explanation
Indices: 58746659--58746693 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
58746649 GAATGCTCTC
*
58746659 TGTTTCTTATTCTTCTT
1 TGTTTCTTATTATTCTT
*
58746676 TGTTTCTTTTTATTCTT
1 TGTTTCTTATTATTCTT
58746693 T
1 T
58746694 TTCTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.14, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCTTATTATTCTT
Found at i:58746763 original size:13 final size:13
Alignment explanation
Indices: 58746723--58746756 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58746713 ACATATATAT
* *
58746723 ATAATATTATTTA
1 ATAATAATAGTTA
58746736 ATAATAATAGTTA
1 ATAATAATAGTTA
58746749 ATAATAAT
1 ATAATAAT
58746757 TTATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATAATAATAGTTA
Found at i:58753942 original size:129 final size:129
Alignment explanation
Indices: 58753760--58754030 Score: 357
Period size: 136 Copynumber: 2.1 Consensus size: 129
58753750 TTCTTATTGA
* * *
58753760 TTGATTTAGTTGTTCTTAGTTCGTTAAACTACGGTCTTCACTTTTGTGTTCTTTCAGTTC-AATT
1 TTGATTTTGTTGTTCTTAGCTCGTTAAACTACAGTCTTCACTTTTGTGTTCTTTCAGTTCAAATT
*
58753824 AAAATGGGTTTGTTTGTTTTTA-CTTTTTCTGTACTATTTGATTCTTATTGATTGCCCCTTTTG
66 AAAATGGGTTTGTCTGTTTTTATCTTTTTCTGTACTATTTGATTCTTATTGATTGCCCCTTTTG
* * **
58753887 TTGATTTTGTTGTTCTTAGCTCTTTGTAAATTACAGTCTTTGCTTTTGTGTTCTTTCAGTTCAAA
1 TTGATTTTGTTGTTCTTAGCTC-GT-TAAACTACAGTCTTCACTTTTGTGTTCTTTCAGTTCAAA
* * * *
58753952 TTTAAATGGGTTTGTCTGTTTTTACTTCTTCTTTTTTTGTACTGTTTGATTCTTATTGATTGCTC
64 TTAAAATGGGTTTGTCTGTTTTTA-----TCTTTTTCTGTACTATTTGATTCTTATTGATTGCCC
58754017 CTTTTG
124 CTTTTG
58754023 TTGATTTT
1 TTGATTTT
58754031 ACTATTTTTA
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
127 20 0.16
128 1 0.01
129 32 0.26
130 24 0.20
136 46 0.37
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (129 bp):
TTGATTTTGTTGTTCTTAGCTCGTTAAACTACAGTCTTCACTTTTGTGTTCTTTCAGTTCAAATT
AAAATGGGTTTGTCTGTTTTTATCTTTTTCTGTACTATTTGATTCTTATTGATTGCCCCTTTTG
Found at i:58754042 original size:136 final size:129
Alignment explanation
Indices: 58753800--58754094 Score: 349
Period size: 136 Copynumber: 2.2 Consensus size: 129
58753790 ACGGTCTTCA
*
58753800 CTTTTGTGTTCTTTCAGTTCAATTAAAATGGGTTTGTTTGTTTTTACTTTTTCTGTACTATTTGA
1 CTTTTGTGTTCTTTCAGTTCAATTAAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTTGA
** *
58753865 TTCTTATTGATTGCCCCTTTTGTTGATTTTGTTGTTCTTAGCTCTTTGTAAATTACAGTCTTTG
66 TTCTTATTGATTGCCCCTTTTGTTGATTTTACTATTCTTAGCTCTTTGTAAATTACAGTCTTTG
* *
58753929 CTTTTGTGTTCTTTCAGTTCAAATTTAAATGGGTTTGTCTGTTTTTACTTCTTCTTTTTTTGTAC
1 CTTTTGTGTTCTTTCAGTTC-AATTAAAATGGGTTTGTCTGTTTTTA------CTTTTTCTGTAC
* * * * * * *
58753994 TGTTTGATTCTTATTGATTGCTCCTTTTGTTGATTTTACTATTTTTAGCTATTGGCAAACTGCAC
59 TATTTGATTCTTATTGATTGCCCCTTTTGTTGATTTTACTATTCTTAGCTCTTTGTAAA-T-TAC
*
58754059 A-ACATTTG
122 AGTC-TTTG
*
58754067 CTTTTTGTGTTCTTTCAGCTCAATTAAA
1 C-TTTTGTGTTCTTTCAGTTCAATTAAA
58754095 GACTAAATTT
Statistics
Matches: 139, Mismatches: 16, Indels: 13
0.83 0.10 0.08
Matches are distributed among these distances:
129 20 0.14
130 24 0.17
136 61 0.44
137 2 0.01
138 14 0.10
139 18 0.13
ACGTcount: A:0.17, C:0.14, G:0.15, T:0.54
Consensus pattern (129 bp):
CTTTTGTGTTCTTTCAGTTCAATTAAAATGGGTTTGTCTGTTTTTACTTTTTCTGTACTATTTGA
TTCTTATTGATTGCCCCTTTTGTTGATTTTACTATTCTTAGCTCTTTGTAAATTACAGTCTTTG
Found at i:58754385 original size:30 final size:30
Alignment explanation
Indices: 58754351--58754447 Score: 149
Period size: 30 Copynumber: 3.2 Consensus size: 30
58754341 GGTTTGAAGT
58754351 TTTATATGAGCATACTGGGAAGGGTATAGG
1 TTTATATGAGCATACTGGGAAGGGTATAGG
* *
58754381 TTTATATGAGCATGCTGGGAAGGGTATAAG
1 TTTATATGAGCATACTGGGAAGGGTATAGG
*
58754411 TTTATATAAGCATATGCTGGGAAGGGTATAGG
1 TTTATATGAGCATA--CTGGGAAGGGTATAGG
58754443 TTTAT
1 TTTAT
58754448 GTATTTAAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
30 40 0.67
32 20 0.33
ACGTcount: A:0.30, C:0.06, G:0.31, T:0.33
Consensus pattern (30 bp):
TTTATATGAGCATACTGGGAAGGGTATAGG
Found at i:58768232 original size:16 final size:16
Alignment explanation
Indices: 58768211--58768241 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58768201 TTTACTATTA
*
58768211 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
58768227 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
58768242 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:58779924 original size:61 final size:62
Alignment explanation
Indices: 58779821--58779944 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 62
58779811 ATCCCAAAAA
58779821 TCAGAGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATT
1 TCAGAGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATT
* *
58779883 TCAGAGTTACCCATCATTTCCACCAA-CGACCACTTAGAATTTAGCTACTCATTGTTATATT
1 TCAGAGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATT
58779944 T
1 T
58779945 AAACTCATTG
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
61 34 0.57
62 26 0.43
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.34
Consensus pattern (62 bp):
TCAGAGTTACCCATCATTTCCACCAACCAACCACTTAGAATTTAGCTACTCATGGTTATATT
Found at i:58780337 original size:23 final size:23
Alignment explanation
Indices: 58780310--58780358 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
58780300 AAGATAAAAA
58780310 TGTAAAAACCAGCTAATGTGAAG
1 TGTAAAAACCAGCTAATGTGAAG
58780333 TGTAAAAACCAGCTAATGTGAAG
1 TGTAAAAACCAGCTAATGTGAAG
58780356 TGT
1 TGT
58780359 CCTCTTTCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.24
Consensus pattern (23 bp):
TGTAAAAACCAGCTAATGTGAAG
Found at i:58787620 original size:40 final size:40
Alignment explanation
Indices: 58787550--58787727 Score: 240
Period size: 40 Copynumber: 4.5 Consensus size: 40
58787540 AAACCAAGTA
* *
58787550 CCTTCGGGATTTAG-CCGG-ATATAG-CTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTC-ACTCGCACAAATG
* *
58787589 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGAAT-TAGTCACTCGCACAAATG
58787629 CCTTCGGGACTTAGCCCGGAATTAGTCAC-CAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTC-GCACAAATG
*
58787669 CCTTCGGGACTTAGCCCGGAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAATTAGTCACTCGCACAAATG
58787709 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
58787728 TTACCATCCG
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
39 14 0.11
40 111 0.87
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAATTAGTCACTCGCACAAATG
Found at i:58791139 original size:40 final size:40
Alignment explanation
Indices: 58791054--58791204 Score: 134
Period size: 40 Copynumber: 3.8 Consensus size: 40
58791044 AATTGAATGA
* * *
58791054 TATCCGGGCTAA-ATCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGA-CCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
58791094 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
58791135 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
58791174 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
58791205 ACGTGATTAT
Statistics
Matches: 92, Mismatches: 11, Indels: 16
0.77 0.09 0.13
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 79 0.86
41 4 0.04
42 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:58791218 original size:40 final size:40
Alignment explanation
Indices: 58791090--58791220 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
58791080 TATGCTGGAA
* * *
58791090 ATTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
** * * **
58791130 GCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGAC
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
*
58791170 ATTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTG
1 ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTG
58791210 ATTATATCCGG
1 ATTATATCCGG
58791221 TTATATTCCG
Statistics
Matches: 73, Mismatches: 17, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (40 bp):
ATTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTG
Found at i:58799638 original size:17 final size:17
Alignment explanation
Indices: 58799616--58799650 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
58799606 AAATGAAGAA
*
58799616 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
58799633 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
58799650 A
1 A
58799651 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:58801274 original size:39 final size:39
Alignment explanation
Indices: 58801167--58801301 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
58801157 GACCTCGAGT
* * * *
58801167 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
58801208 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
58801246 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
58801285 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
58801302 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:58807359 original size:13 final size:13
Alignment explanation
Indices: 58807343--58807376 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
58807333 TAAATTATAA
*
58807343 ATTATTATTAACT
1 ATTATTATTAAAT
58807356 ATTATTATTAAAT
1 ATTATTATTAAAT
*
58807369 AATATTAT
1 ATTATTAT
58807377 ATATATATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:58807428 original size:17 final size:17
Alignment explanation
Indices: 58807406--58807440 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
58807396 AAATGAAGAA
*
58807406 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
58807423 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
58807440 A
1 A
58807441 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:58809066 original size:39 final size:39
Alignment explanation
Indices: 58808959--58809093 Score: 121
Period size: 39 Copynumber: 3.4 Consensus size: 39
58808949 GACCTCGAGT
* * * *
58808959 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAT-TATTACTTCGGCTAG-TC
** ** * *
58809000 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
*
58809038 CGATGAGACACTGGGTGTCAATTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAATTATTACTTCG-GCTAGTC
*
58809077 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
58809094 CCATATTGGT
Statistics
Matches: 74, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
38 18 0.24
39 36 0.49
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAATTATTACTTCGGCTAGTC
Found at i:58811367 original size:17 final size:18
Alignment explanation
Indices: 58811347--58811383 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
58811337 AATCAAAATT
*
58811347 TATTTTATATGAA-TTAA
1 TATTTTATATAAACTTAA
58811364 TATTTTATATAAACTTAA
1 TATTTTATATAAACTTAA
58811382 TA
1 TA
58811384 ATAATAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TATTTTATATAAACTTAA
Found at i:58819940 original size:23 final size:24
Alignment explanation
Indices: 58819887--58819945 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
58819877 AGAAAACTAC
*
58819887 TCTAAACCTAAACTAAAAGATGAA
1 TCTAAACCTAAACTAAAAGAGGAA
* * **
58819911 ACAAAACCTAAACT-AAAGAGGTT
1 TCTAAACCTAAACTAAAAGAGGAA
58819934 TCTAAACCTAAA
1 TCTAAACCTAAA
58819946 ATACAACCTT
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
23 16 0.57
24 12 0.43
ACGTcount: A:0.53, C:0.19, G:0.08, T:0.20
Consensus pattern (24 bp):
TCTAAACCTAAACTAAAAGAGGAA
Found at i:58821208 original size:18 final size:17
Alignment explanation
Indices: 58821186--58821242 Score: 55
Period size: 18 Copynumber: 3.4 Consensus size: 17
58821176 TCTTTTTTTC
58821186 TCTCACAATGTTTTTGA
1 TCTCACAATGTTTTTGA
* *
58821203 TCCTCACTAT-ATTTTG-
1 T-CTCACAATGTTTTTGA
*
58821219 TTTCACAATGTTTTTGA
1 TCTCACAATGTTTTTGA
58821236 TTCTCAC
1 -TCTCAC
58821243 TATAGTTTCT
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
15 6 0.20
16 6 0.20
17 6 0.20
18 12 0.40
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (17 bp):
TCTCACAATGTTTTTGA
Found at i:58821225 original size:33 final size:33
Alignment explanation
Indices: 58821182--58821255 Score: 112
Period size: 33 Copynumber: 2.2 Consensus size: 33
58821172 TTTTTCTTTT
* *
58821182 TTTCTCTCACAATGTTTTTGATCCTCACTATAT
1 TTTCTTTCACAATGTTTTTGATCCTCACTATAG
* *
58821215 TTTGTTTCACAATGTTTTTGATTCTCACTATAG
1 TTTCTTTCACAATGTTTTTGATCCTCACTATAG
58821248 TTTCTTTC
1 TTTCTTTC
58821256 TTTCACATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.19, C:0.20, G:0.08, T:0.53
Consensus pattern (33 bp):
TTTCTTTCACAATGTTTTTGATCCTCACTATAG
Found at i:58822412 original size:17 final size:17
Alignment explanation
Indices: 58822373--58822443 Score: 67
Period size: 17 Copynumber: 4.2 Consensus size: 17
58822363 TGAGAGTAAT
58822373 TTTATTTTA-GATATTTA
1 TTTATTTTATG-TATTTA
* *
58822390 TGTATTTT-TGTTTTTA
1 TTTATTTTATGTATTTA
58822406 TTTTATTTTATGTATTTA
1 -TTTATTTTATGTATTTA
*
58822424 TTTA-TTTATTTATATTA
1 TTTATTTTATGTAT-TTA
58822441 TTT
1 TTT
58822444 TAGTTAGTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
16 13 0.29
17 25 0.56
18 7 0.16
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TTTATTTTATGTATTTA
Found at i:58822427 original size:4 final size:4
Alignment explanation
Indices: 58822384--58822443 Score: 50
Period size: 4 Copynumber: 14.2 Consensus size: 4
58822374 TTATTTTAGA
* * *
58822384 TATT TATG TATT T-TT GTTTT TATTT TATTT TATG TATT TATT TATT TATT
1 TATT TATT TATT TATT -TATT TA-TT TA-TT TATT TATT TATT TATT TATT
58822434 TATAT TATT T
1 TAT-T TATT T
58822444 TAGTTAGTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
3 2 0.04
4 30 0.64
5 15 0.32
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:58823254 original size:21 final size:21
Alignment explanation
Indices: 58823230--58823270 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
58823220 TGCTCACTTG
58823230 GGCGTGTATGG-CTGTCACATC
1 GGCGTGTATGGTCT-TCACATC
*
58823251 GGCGTGTGTGGTCTTCACAT
1 GGCGTGTATGGTCTTCACAT
58823271 GAGCATGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.12, C:0.22, G:0.34, T:0.32
Consensus pattern (21 bp):
GGCGTGTATGGTCTTCACATC
Found at i:58826924 original size:43 final size:43
Alignment explanation
Indices: 58826767--58826925 Score: 171
Period size: 43 Copynumber: 3.7 Consensus size: 43
58826757 TATGTGTTAT
* *
58826767 CGTGTAAGACCACGTCTGGGACGTTGGCATTGACT-TATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * *
58826811 CGTGTAAGACCACGTCTAGGACATTGGCATCG-TACTTGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
**
58826853 CGTGTAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGACCACGTCTGGGAC-GTTGGCATCGATATTTGATTA
* * *
58826896 CATGTAAGACCACATCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
58826926 TGTACAAGCT
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 31 0.33
43 34 0.36
44 29 0.31
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:58828453 original size:23 final size:23
Alignment explanation
Indices: 58828423--58828475 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
58828413 GACTAGCCAT
**
58828423 AAAGGCTTCCTTAGAACAACCAC
1 AAAGGCTTCCACAGAACAACCAC
58828446 AAAGGCTTCCACAGAACAACCAC
1 AAAGGCTTCCACAGAACAACCAC
58828469 AAAGGCT
1 AAAGGCT
58828476 CCCATAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.30, G:0.15, T:0.13
Consensus pattern (23 bp):
AAAGGCTTCCACAGAACAACCAC
Found at i:58831710 original size:29 final size:29
Alignment explanation
Indices: 58831668--58831756 Score: 178
Period size: 29 Copynumber: 3.1 Consensus size: 29
58831658 GATTATGGGC
58831668 TCATTTATTTTATCTACTGAAGTAAGTTG
1 TCATTTATTTTATCTACTGAAGTAAGTTG
58831697 TCATTTATTTTATCTACTGAAGTAAGTTG
1 TCATTTATTTTATCTACTGAAGTAAGTTG
58831726 TCATTTATTTTATCTACTGAAGTAAGTTG
1 TCATTTATTTTATCTACTGAAGTAAGTTG
58831755 TC
1 TC
58831757 TTTCCCGCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 60 1.00
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.48
Consensus pattern (29 bp):
TCATTTATTTTATCTACTGAAGTAAGTTG
Found at i:58833606 original size:34 final size:34
Alignment explanation
Indices: 58833568--58833636 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
58833558 CTCGTAAGTA
58833568 AGTGGATAATCATCCTCACAATTGGCTTTTGTAT
1 AGTGGATAATCATCCTCACAATTGGCTTTTGTAT
58833602 AGTGGATAATCATCCTCACAATTGGCTTTTGTAT
1 AGTGGATAATCATCCTCACAATTGGCTTTTGTAT
58833636 A
1 A
58833637 TAAATACTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (34 bp):
AGTGGATAATCATCCTCACAATTGGCTTTTGTAT
Found at i:58838606 original size:17 final size:17
Alignment explanation
Indices: 58838580--58838620 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
58838570 GTTGGAGAAA
* *
58838580 TTGTGACACAAAAGGCC
1 TTGTGGCACAAAAAGCC
58838597 TTGTGGCACAAAAAGCC
1 TTGTGGCACAAAAAGCC
58838614 TTGTGGC
1 TTGTGGC
58838621 TTAGTGGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (17 bp):
TTGTGGCACAAAAAGCC
Found at i:58839226 original size:27 final size:27
Alignment explanation
Indices: 58839196--58839482 Score: 349
Period size: 27 Copynumber: 10.6 Consensus size: 27
58839186 TTAGTTTACC
* *
58839196 AAATTATCAAAATACCTCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
58839223 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
58839250 AAATCACCAAAATACCCCTGCTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
58839277 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
58839304 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
58839331 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
58839358 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
58839385 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
58839412 AAATTATCAAAATACCCGTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
58839439 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
58839466 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
58839483 TCGACCTGTA
Statistics
Matches: 220, Mismatches: 40, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 220 1.00
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:58839262 original size:54 final size:54
Alignment explanation
Indices: 58839196--58839535 Score: 387
Period size: 54 Copynumber: 6.3 Consensus size: 54
58839186 TTAGTTTACC
* * * *
58839196 AAATTATCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
58839250 AAATCACCAAAATACCCCT-GCTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
58839304 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
58839358 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * * * * * *
58839412 AAATTATCAAAATACCCGTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
** * ** * * * ** *
58839466 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
58839520 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
58839536 ATTAATTTAC
Statistics
Matches: 247, Mismatches: 35, Indels: 7
0.85 0.12 0.02
Matches are distributed among these distances:
53 5 0.02
54 240 0.97
55 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:58839493 original size:81 final size:79
Alignment explanation
Indices: 58839196--58839535 Score: 310
Period size: 81 Copynumber: 4.2 Consensus size: 79
58839186 TTAGTTTACC
* * * ** * * * *
58839196 AAATTATCAAAATACCTCTGGTTTGTAAAATTACTAAAATACCTTTGGTTTATAAAATCACCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACC-CCGATTTGTAAAATTATCAAA
*
58839261 ATACCCCTGCTTTGTA
65 ATA-CCCTGATTTGTA
* * ** * *
58839277 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTA-CTAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCGA-TTTGTAAAATTATC-AA
*
58839341 AATACCCTTTG-TTTATA
64 AATACCC--TGATTTGTA
*
58839358 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTATCAA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCCC-GATTTGTAAAATTATCAA
58839422 AATACCC-GTAGTTTGTA
64 AATACCCTG-A-TTTGTA
* * ** **
58839439 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGTAAAATTATTGAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCC-CGATTTGTAAAATTATCAAA
*
58839504 ATACCCTCGACTTGTA
65 ATACCCT-GATTTGTA
*
58839520 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
58839536 ATTAATTTAC
Statistics
Matches: 215, Mismatches: 30, Indels: 28
0.79 0.11 0.10
Matches are distributed among these distances:
78 1 0.00
80 4 0.02
81 203 0.94
82 6 0.03
83 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (79 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCGATTTGTAAAATTATCAAAA
TACCCTGATTTGTA
Found at i:58839535 original size:27 final size:27
Alignment explanation
Indices: 58839196--58839535 Score: 264
Period size: 27 Copynumber: 12.6 Consensus size: 27
58839186 TTAGTTTACC
* *
58839196 AAATTATCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * * * *
58839223 AAATTACTAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
58839250 AAATCACCAAAATACCC-CTGCTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* * **
58839277 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
*
58839304 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
58839331 AAATTACTAAAATACCCTTTG-TTTATA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
58839358 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* *
58839385 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
* *
58839412 AAATTATCAAAATACCCGTAG-TTTGTA
1 AAATTACCAAAATACCC-TCGATTTGTA
*
58839439 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GATTTGTA
** **
58839466 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*** *
58839493 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
58839520 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
58839536 ATTAATTTAC
Statistics
Matches: 250, Mismatches: 49, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
26 1 0.00
27 245 0.98
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:58839721 original size:27 final size:27
Alignment explanation
Indices: 58839548--58839770 Score: 230
Period size: 27 Copynumber: 8.3 Consensus size: 27
58839538 TAATTTACAA
* *
58839548 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
58839575 AAATGCCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
58839602 AAATACCAAAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
58839629 AATTACTAAAACACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
58839656 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
58839683 AAATACCTAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
58839710 AATTACTGAAATACTCCTATAAGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
58839737 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
58839764 AATTACC
1 AATTACC
58839771 ATTTTACCCC
Statistics
Matches: 164, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 164 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:58839779 original size:81 final size:81
Alignment explanation
Indices: 58839583--58839781 Score: 258
Period size: 81 Copynumber: 2.5 Consensus size: 81
58839573 AGAAATGCCA
* *
58839583 AAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATTACTAAAACACCCCTG
1 AAATACCCTTGTAGGGTAGAAATACCATAATACCCCTGTAGGGTAAAATTACTAAAACACCCCTA
* *
58839648 TAGGGTAGAATTACCG
66 TAAGGTAAAATTACCG
* * * *
58839664 AAATACCCTTGTAGGGTAGAAATACC-TAAATACCCCTGTAGGGTAGAATTACTGAAATACTCCT
1 AAATACCCTTGTAGGGTAGAAATACCAT-AATACCCCTGTAGGGTAAAATTACTAAAACACCCCT
58839728 ATAAGGTAAAATTACCG
65 ATAAGGTAAAATTACCG
* * **
58839745 AGATACCCTTGTGGGGTA-AAATTACCATTTTACCCCT
1 AAATACCCTTGTAGGGTAGAAA-TACCATAATACCCCT
58839782 AGGGTGTTAA
Statistics
Matches: 103, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 3 0.03
81 99 0.96
82 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.26
Consensus pattern (81 bp):
AAATACCCTTGTAGGGTAGAAATACCATAATACCCCTGTAGGGTAAAATTACTAAAACACCCCTA
TAAGGTAAAATTACCG
Found at i:58840060 original size:26 final size:27
Alignment explanation
Indices: 58840031--58840090 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
58840021 CCACATATAT
*
58840031 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * * *
58840057 ATATTTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
58840084 ATATCTG
1 ATATCTG
58840091 GCAGCCTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:58840244 original size:31 final size:31
Alignment explanation
Indices: 58840209--58840288 Score: 97
Period size: 31 Copynumber: 2.6 Consensus size: 31
58840199 TTGTATTCAC
* * * *
58840209 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
* **
58840240 ATTCTGATTCTAATTCTATCACCTAATTTTG
1 ATTCTGATTCTGATTCTATCACCTAATACTG
58840271 ATTCTGATTCTGATTCTA
1 ATTCTGATTCTGATTCTA
58840289 GTTCTGATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATCACCTAATACTG
Done.