Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr07 97507971
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97507971
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
File 200 of 328
Found at i:59973489 original size:29 final size:29
Alignment explanation
Indices: 59973356--59973488 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
59973346 GTGACAAGAT
59973356 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
59973385 TGGCACTAAGTGTGCGAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
*
59973414 TGGCACTAAGTGTGCAAACTTAAATTATA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
* * ***
59973443 TGGCACTATGTGTGCGAGCTTAAATCGCA
1 TGGCACTAAGTGTGCGAACTTAAATTATA
59973472 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
59973489 GATCGTTTAT
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAACTTAAATTATA
Found at i:59977529 original size:29 final size:29
Alignment explanation
Indices: 59977494--59977626 Score: 212
Period size: 29 Copynumber: 4.6 Consensus size: 29
59977484 ATAAACGATC
*** *
59977494 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
59977523 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
59977552 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
59977581 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
59977610 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
59977627 ATCTTGTCAC
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 96 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:59979180 original size:27 final size:27
Alignment explanation
Indices: 59979150--59979201 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
59979140 CTGCCAGAAA
*
59979150 AGTAAATGTGGCAAAGCCACTAGTACC
1 AGTAAATGTGGCAAAGCCACCAGTACC
* *
59979177 AGTAATTGTGGCATAGCCACCAGTA
1 AGTAAATGTGGCAAAGCCACCAGTA
59979202 ATAGTGAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTACC
Found at i:59979213 original size:27 final size:26
Alignment explanation
Indices: 59979154--59979233 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 26
59979144 CAGAAAAGTA
* * *
59979154 AATGTGGCAAAGCCACTAGTACCAGT
1 AATGTGGCATAGCCACCAGTAACAGT
*
59979180 AATTGTGGCATAGCCACCAGTAATAGT
1 AA-TGTGGCATAGCCACCAGTAACAGT
* * *
59979207 GAATGTGACATAGTCACGAGT-ACAGT
1 -AATGTGGCATAGCCACCAGTAACAGT
59979233 A
1 A
59979234 CTTCCTCCAC
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
25 1 0.02
26 6 0.14
27 35 0.80
28 2 0.05
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (26 bp):
AATGTGGCATAGCCACCAGTAACAGT
Found at i:59979401 original size:27 final size:27
Alignment explanation
Indices: 59979382--59979515 Score: 171
Period size: 27 Copynumber: 5.0 Consensus size: 27
59979372 CATTTTGTCA
*
59979382 TACAGGGGTAATACGATCATTTTACCC
1 TACAGGGGTATTACGATCATTTTACCC
* *
59979409 TACAGGGGCATTACGGTCATTTTACCC
1 TACAGGGGTATTACGATCATTTTACCC
*
59979436 TATAGGGGTATTACGATCATTTTACCC
1 TACAGGGGTATTACGATCATTTTACCC
* *
59979463 TACAGGGGTATTAC-AGTCATTTTATCT
1 TACAGGGGTATTACGA-TCATTTTACCC
* * *
59979490 TACAAGGGTATTACGGTTATTTTACC
1 TACAGGGGTATTACGATCATTTTACC
59979516 TATTTTGGGG
Statistics
Matches: 92, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 91 0.99
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
TACAGGGGTATTACGATCATTTTACCC
Found at i:59983300 original size:53 final size:53
Alignment explanation
Indices: 59983236--59983342 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 53
59983226 CGTTTGCCAG
* * * **
59983236 GTCGTGTAACACTATGAGTGCTACACATACCCGTGTGTTAGGTTGTGTGCTAA
1 GTCGTGTAACACTATGAGTGCCACACACACCCATGTGTTAGGCCGTGTGCTAA
**
59983289 GTCGTGTAACACTATGAGTGCCACACACGTCCATGTGTTAGGCCGTGTGCTAA
1 GTCGTGTAACACTATGAGTGCCACACACACCCATGTGTTAGGCCGTGTGCTAA
59983342 G
1 G
59983343 CCATGTAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
53 47 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (53 bp):
GTCGTGTAACACTATGAGTGCCACACACACCCATGTGTTAGGCCGTGTGCTAA
Found at i:59985389 original size:20 final size:20
Alignment explanation
Indices: 59985364--59985443 Score: 88
Period size: 20 Copynumber: 4.0 Consensus size: 20
59985354 AGCTGTTACA
59985364 GGTACTCCTGTTTGTACTTC
1 GGTACTCCTGTTTGTACTTC
**
59985384 GGTACTCCTACTTGTACTTC
1 GGTACTCCTGTTTGTACTTC
* * * *
59985404 GGTACACTTGTTTGTAGTTT
1 GGTACTCCTGTTTGTACTTC
* *
59985424 GGTACTCTTGTTTCTACTTC
1 GGTACTCCTGTTTGTACTTC
59985444 AGTAACCTTA
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.12, C:0.23, G:0.19, T:0.46
Consensus pattern (20 bp):
GGTACTCCTGTTTGTACTTC
Found at i:59985491 original size:20 final size:20
Alignment explanation
Indices: 59985466--59985513 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
59985456 TGCAGATTCA
*
59985466 TGCCTCTGTAAGCACTATAG
1 TGCCTCTGTAAGCACTACAG
* * *
59985486 TGCCTCTATAAGCATTACGG
1 TGCCTCTGTAAGCACTACAG
59985506 TGCCTCTG
1 TGCCTCTG
59985514 AAATATGGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (20 bp):
TGCCTCTGTAAGCACTACAG
Found at i:59990701 original size:22 final size:23
Alignment explanation
Indices: 59990673--59990715 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
59990663 TGATCACACA
* *
59990673 TACTTAA-CATATCATAATAACC
1 TACTTAATCATACCAAAATAACC
59990695 TACTTAATCATACCAAAATAA
1 TACTTAATCATACCAAAATAA
59990716 GCCATTACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (23 bp):
TACTTAATCATACCAAAATAACC
Found at i:59994951 original size:29 final size:29
Alignment explanation
Indices: 59994923--59995024 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
59994913 CCTCCGAGCT
** * * *
59994923 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
59994952 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
59994981 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
59995010 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
59995025 GATCTCGTCG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60002796 original size:29 final size:29
Alignment explanation
Indices: 60002768--60002869 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
60002758 CCTCCGAGCT
** * * *
60002768 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60002797 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60002826 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60002855 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
60002870 GATCTCGTCA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60006258 original size:20 final size:20
Alignment explanation
Indices: 60006232--60006318 Score: 95
Period size: 20 Copynumber: 4.3 Consensus size: 20
60006222 CTTCTACGAG
60006232 TTTGCACTTCAATGCCTCTA
1 TTTGCACTTCAATGCCTCTA
*
60006252 CTTGCACTTCAATGCCTCTA
1 TTTGCACTTCAATGCCTCTA
* * *
60006272 TTTAG-ACTTTAGTGTCTCTA
1 TTT-GCACTTCAATGCCTCTA
* *
60006292 TTTGCACTCCAGTGCCTCTA
1 TTTGCACTTCAATGCCTCTA
*
60006312 ATTGCAC
1 TTTGCAC
60006319 AATCGTACCA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
19 1 0.02
20 54 0.96
21 1 0.02
ACGTcount: A:0.20, C:0.29, G:0.13, T:0.39
Consensus pattern (20 bp):
TTTGCACTTCAATGCCTCTA
Found at i:60007498 original size:20 final size:20
Alignment explanation
Indices: 60007473--60007512 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
60007463 GGTTGTGATG
*
60007473 GTTCCAAATGGCATATTGGT
1 GTTCCAAATGGCATAATGGT
60007493 GTTCCAAATGGCATAATGGT
1 GTTCCAAATGGCATAATGGT
60007513 TAAGTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.33
Consensus pattern (20 bp):
GTTCCAAATGGCATAATGGT
Found at i:60008572 original size:18 final size:18
Alignment explanation
Indices: 60008537--60008573 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
60008527 AATACAATAT
*
60008537 CAACATCTATCATACACA
1 CAACATCTATCAAACACA
60008555 CAACAT-TATCAAAC-CA
1 CAACATCTATCAAACACA
60008571 CAA
1 CAA
60008574 TTGACTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 5 0.28
17 7 0.39
18 6 0.33
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (18 bp):
CAACATCTATCAAACACA
Found at i:60016273 original size:31 final size:31
Alignment explanation
Indices: 60016235--60016294 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
60016225 AAAGGAAAGT
60016235 AAGAGAGTAAGCTTTATGGCTTAGTAAGACC
1 AAGAGAGTAAGCTTTATGGCTTAGTAAGACC
60016266 AAGAGAGTAAGCTTTATGGCTTAGTAAGA
1 AAGAGAGTAAGCTTTATGGCTTAGTAAGA
60016295 TCGTATCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (31 bp):
AAGAGAGTAAGCTTTATGGCTTAGTAAGACC
Found at i:60017620 original size:50 final size:50
Alignment explanation
Indices: 60017458--60017772 Score: 294
Period size: 50 Copynumber: 6.5 Consensus size: 50
60017448 CGACATCATA
* * * *
60017458 TCCCAGACATGGTCTTACACTAG--CTCACCCATCAAAGTCGATGCCATG
1 TCCCAGACATGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATG
* * * * * *
60017506 TCCCAAACATGGTCTTACACTAACTCTCGTATATCGA-GGCAATGCCATG
1 TCCCAGACATGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATG
* * *
60017555 TCCCAGACATGGTCTTACAATGGCTCTCATCTATCGATGTTGATGCCATG
1 TCCCAGACATGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATG
* *
60017605 TCCCAGACATGGTCTTACACTAGCTCTCATCTAT-TAGTGTCGATGTCATG
1 TCCCAGACATGGTCTTACACTAGCTCTCATCTATCGA-TGTCGATGCCATG
* * * * *
60017655 TCCCAGACATAGTCTTACACTAGCTCTCGTC--TCCATGCCGATGTCATG
1 TCCCAGACATGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATG
* * * * *
60017703 T-CCA-ACATGGTCTTACACTGGCACACGA--AAT-G-TGGCCGATGCCATG
1 TCCCAGACATGGTCTTACACTAGCTCTC-ATCTATCGAT-GTCGATGCCATG
60017749 TCCCAGACATGGTCTTACACTAGC
1 TCCCAGACATGGTCTTACACTAGC
60017773 GCACATATCA
Statistics
Matches: 221, Mismatches: 35, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
45 1 0.00
46 30 0.14
47 7 0.03
48 52 0.24
49 43 0.19
50 88 0.40
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACACTAGCTCTCATCTATCGATGTCGATGCCATG
Found at i:60020664 original size:28 final size:28
Alignment explanation
Indices: 60020632--60020700 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
60020622 GCGTAGATCA
*
60020632 CGAAATTACCCCTAAAGAGCAAAATTAT
1 CGAAATTACCCCTAAAGAGCAAAATTAC
60020660 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
60020688 CGATA-TACCCCTA
1 CGAAATTACCCCTA
60020701 GGGTTTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:60025207 original size:12 final size:12
Alignment explanation
Indices: 60025190--60025226 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
60025180 TATGGCATAG
60025190 GCTCTAGTCGAA
1 GCTCTAGTCGAA
60025202 GCTCTAGTCGAA
1 GCTCTAGTCGAA
*
60025214 GCTCTAGCCGAA
1 GCTCTAGTCGAA
60025226 G
1 G
60025227 ACCTCACTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (12 bp):
GCTCTAGTCGAA
Found at i:60027726 original size:44 final size:44
Alignment explanation
Indices: 60027660--60027743 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
60027650 AATAGTATGG
*
60027660 CACAGATCACAAAATGACCAAGTCCCCTATACATGCCATAATGA
1 CACAGATCACAAAATGAACAAGTCCCCTATACATGCCATAATGA
60027704 CACAGATCACAAAATGAACAAGTCCCCTATACATGCCATA
1 CACAGATCACAAAATGAACAAGTCCCCTATACATGCCATA
60027744 CTCAAAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.42, C:0.30, G:0.11, T:0.18
Consensus pattern (44 bp):
CACAGATCACAAAATGAACAAGTCCCCTATACATGCCATAATGA
Found at i:60030118 original size:40 final size:40
Alignment explanation
Indices: 60030074--60030301 Score: 379
Period size: 40 Copynumber: 5.7 Consensus size: 40
60030064 GCTACTTGCT
60030074 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60030114 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60030154 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
60030194 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
60030234 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
60030273 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
60030302 CATCCGAATA
Statistics
Matches: 176, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
38 1 0.01
39 34 0.19
40 140 0.80
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:60030173 original size:80 final size:80
Alignment explanation
Indices: 60030041--60030297 Score: 396
Period size: 80 Copynumber: 3.2 Consensus size: 80
60030031 CAACCAAGTA
* * * *
60030041 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATA
60030104 GTAACTCGCACAAATG
65 GTAACTCGCACAAATG
*
60030120 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCCCGGTTATAG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
60030185 TAACTCGCACAAATG
66 TAACTCGCACAAATG
*
60030200 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AATTA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TA
* *
60030263 GTCACTAGCACAAATG
65 GTAACTCGCACAAATG
60030279 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
60030298 TTATCATCCG
Statistics
Matches: 166, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
78 1 0.01
79 58 0.35
80 107 0.64
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAG
TAACTCGCACAAATG
Found at i:60036968 original size:40 final size:40
Alignment explanation
Indices: 60036844--60036970 Score: 104
Period size: 40 Copynumber: 3.2 Consensus size: 40
60036834 ATGCTGGAAA
* *
60036844 TTATAT-CGGGTTAAGA-CCGAAGGCAATTGT--ACTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAC-A-TGG
* * * * **
60036882 CTACATCC-GGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
*
60036921 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
60036961 TTATATCCGG
1 TTATATCCGG
60036971 TTATTCCGAA
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
38 11 0.17
39 20 0.30
40 33 0.50
41 1 0.02
42 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
Found at i:60039079 original size:29 final size:28
Alignment explanation
Indices: 60039009--60039083 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
60038999 ATACTCGATT
* *
60039009 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
60039037 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
60039066 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
60039084 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:60039100 original size:29 final size:29
Alignment explanation
Indices: 60039067--60039140 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60039057 CCTTCGAGCT
60039067 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60039096 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60039125 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60039141 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60046914 original size:29 final size:29
Alignment explanation
Indices: 60046880--60046954 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
60046870 TACTCGATTT
*
60046880 CGCACACTTAGTGCCATGCGATTTAG-GCC
1 CGCACACTTAGTGCCATGC-ACTTAGAGCC
** * * *
60046909 CGCACACACAGTGCCATGCCCTTCGAGCT
1 CGCACACTTAGTGCCATGCACTTAGAGCC
60046938 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
60046955 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 3 0.08
29 34 0.92
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.21
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTAGAGCC
Found at i:60046971 original size:29 final size:29
Alignment explanation
Indices: 60046938--60047011 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60046928 CCTTCGAGCT
60046938 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60046967 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60046996 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60047012 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60055304 original size:29 final size:29
Alignment explanation
Indices: 60055271--60055370 Score: 200
Period size: 29 Copynumber: 3.4 Consensus size: 29
60055261 GACGAGATTA
60055271 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
60055300 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
60055329 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
60055358 GCACTAAGTGTGC
1 GCACTAAGTGTGC
60055371 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 71 1.00
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:60055386 original size:29 final size:30
Alignment explanation
Indices: 60055271--60055430 Score: 188
Period size: 29 Copynumber: 5.5 Consensus size: 30
60055261 GACGAGATTA
60055271 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
60055300 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
60055329 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
* ***
60055358 GCACTAAGTGTGCGA-GCTCGAAGGGTATG
1 GCACTAAGTGTGCGATGCTGGAAATATATG
* * * **
60055387 GCACTATGTGTGCG-GGCT-TAAATCGCATG
1 GCACTAAGTGTGCGATGCTGGAAAT-ATATG
60055416 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
60055431 AATCGAGTAT
Statistics
Matches: 117, Mismatches: 10, Indels: 7
0.87 0.07 0.05
Matches are distributed among these distances:
28 2 0.02
29 114 0.97
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.26
Consensus pattern (30 bp):
GCACTAAGTGTGCGATGCTGGAAATATATG
Found at i:60063244 original size:30 final size:29
Alignment explanation
Indices: 60063188--60063288 Score: 193
Period size: 29 Copynumber: 3.4 Consensus size: 29
60063178 GACGAGATTA
60063188 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
60063217 GCACTAAGTGTGCATGCTGGAAAATATATG
1 GCACTAAGTGTGCATGCTGG-AAATATATG
60063247 GCACTAAGTGTGCATGCTGGAAATATATG
1 GCACTAAGTGTGCATGCTGGAAATATATG
60063276 GCACTAAGTGTGC
1 GCACTAAGTGTGC
60063289 GAGCTCGAAG
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
29 42 0.59
30 29 0.41
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (29 bp):
GCACTAAGTGTGCATGCTGGAAATATATG
Found at i:60063304 original size:29 final size:29
Alignment explanation
Indices: 60063188--60063348 Score: 114
Period size: 29 Copynumber: 5.5 Consensus size: 29
60063178 GACGAGATTA
* **
60063188 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
* **
60063217 GCACTAAGTGTGC-ATGCTGGAAAATATATG
1 GCACTAAGTGTGCGA-GCTCG-AAACGTATG
* **
60063247 GCACTAAGTGTGC-ATGCTGGAAATATATG
1 GCACTAAGTGTGCGA-GCTCGAAACGTATG
**
60063276 GCACTAAGTGTGCGAGCTCGAAGGGTATG
1 GCACTAAGTGTGCGAGCTCGAAACGTATG
* * * *
60063305 GCACTATGTGTGCGGGCT-TAAATCGCATG
1 GCACTAAGTGTGCGAGCTCGAAA-CGTATG
60063334 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
60063349 AATCGAGTAT
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
28 2 0.02
29 85 0.73
30 30 0.26
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGCTCGAAACGTATG
Found at i:60070480 original size:28 final size:29
Alignment explanation
Indices: 60070422--60070487 Score: 116
Period size: 28 Copynumber: 2.3 Consensus size: 29
60070412 GTGCGTGATA
60070422 GGCCATATAAATGTGATCTGGGCCTAATG
1 GGCCATATAAATGTGATCTGGGCCTAATG
*
60070451 GGCCATATAAATGTGAT-TGGGCCTAGTG
1 GGCCATATAAATGTGATCTGGGCCTAATG
60070479 GGCCATATA
1 GGCCATATA
60070488 CAGGTATGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 19 0.53
29 17 0.47
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
GGCCATATAAATGTGATCTGGGCCTAATG
Found at i:60077548 original size:25 final size:25
Alignment explanation
Indices: 60077520--60077568 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
60077510 AAAATCGAGG
*
60077520 ATGTATTGGTACGTGTAGAAAAATA
1 ATGTATTGGTACATGTAGAAAAATA
60077545 ATGTATTGGTACATGTAGAAAAAT
1 ATGTATTGGTACATGTAGAAAAAT
60077569 TTATCTTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.41, C:0.04, G:0.22, T:0.33
Consensus pattern (25 bp):
ATGTATTGGTACATGTAGAAAAATA
Found at i:60081244 original size:46 final size:46
Alignment explanation
Indices: 60081191--60081290 Score: 141
Period size: 46 Copynumber: 2.2 Consensus size: 46
60081181 CCGATTATCC
* * *
60081191 CTTCTCCTCTTTCTCAAATGGTTTA-TCCTTGAACCAATT-GCTTTTT
1 CTTCTCCTCTCTCTCAAATGGTTTACTACTT-AACCAATTAG-TTTTA
60081237 CTTCTCCTCTCTCTCAAATGGTTTACTACTTAACCAATTAGTTTTA
1 CTTCTCCTCTCTCTCAAATGGTTTACTACTTAACCAATTAGTTTTA
60081283 CTTCTCCT
1 CTTCTCCT
60081291 GCCCTCACTG
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
46 44 0.90
47 5 0.10
ACGTcount: A:0.19, C:0.28, G:0.07, T:0.46
Consensus pattern (46 bp):
CTTCTCCTCTCTCTCAAATGGTTTACTACTTAACCAATTAGTTTTA
Found at i:60084854 original size:15 final size:16
Alignment explanation
Indices: 60084828--60084857 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
60084818 TGCTATTAAT
60084828 TTATTAAAATAAAAGC
1 TTATTAAAATAAAAGC
60084844 TTATT-AAATAAAAG
1 TTATTAAAATAAAAG
60084858 ATGATTCTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (16 bp):
TTATTAAAATAAAAGC
Found at i:60084928 original size:22 final size:19
Alignment explanation
Indices: 60084889--60084930 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
60084879 TGCAAAGTTG
60084889 ATAATAATTAATATATATT
1 ATAATAATTAATATATATT
60084908 ATAATATATATAATTATATATT
1 ATAATA-AT-TAA-TATATATT
60084930 A
1 A
60084931 AAAATAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 3 0.15
22 9 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAATAATTAATATATATT
Found at i:60090648 original size:29 final size:29
Alignment explanation
Indices: 60090613--60090774 Score: 270
Period size: 29 Copynumber: 5.6 Consensus size: 29
60090603 ATAAACGATC
*** *
60090613 TCGCACACTTAGTGCCATGCGATTTAAGC
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
60090642 TCGCACACATAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
*
60090671 TTGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
60090700 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
60090729 TCGCACACTTAGTGCCATATAATTTAAGT
1 TCGCACACTTAGTGCCATATAATTTAAGT
60090758 TCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
60090775 ATCTTGTCAC
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 125 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (29 bp):
TCGCACACTTAGTGCCATATAATTTAAGT
Found at i:60094261 original size:29 final size:29
Alignment explanation
Indices: 60094229--60094306 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
60094219 ATACCCTCCG
** *
60094229 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
60094258 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
60094287 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
60094307 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:60101948 original size:29 final size:29
Alignment explanation
Indices: 60101916--60101993 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
60101906 ATACCCTCCG
** *
60101916 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
60101945 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
60101974 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
60101994 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:60104256 original size:78 final size:79
Alignment explanation
Indices: 60104126--60104309 Score: 309
Period size: 78 Copynumber: 2.3 Consensus size: 79
60104116 TCGGATGATA
* *
60104126 ACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTT
60104191 GTGCGAGTTACTAT
66 GTGCGAGTTACTAT
*
60104205 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGCATT
60104268 TGTGCGAGTTACTAT
65 TGTGCGAGTTACTAT
60104283 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
60104310 AGCAAGTAGC
Statistics
Matches: 99, Mismatches: 3, Indels: 5
0.93 0.03 0.05
Matches are distributed among these distances:
77 2 0.02
78 72 0.73
80 25 0.25
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGTTACTAT
Found at i:60104323 original size:40 final size:40
Alignment explanation
Indices: 60104123--60104309 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
60104113 TATTCGGATG
* *
60104123 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
60104163 A-ATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
60104203 AT--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
60104241 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
60104281 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
60104310 AGCAAGTAGC
Statistics
Matches: 140, Mismatches: 3, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
38 38 0.27
39 1 0.01
40 101 0.72
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:60112301 original size:40 final size:40
Alignment explanation
Indices: 60112197--60112452 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
60112187 CGGATGATAA
* *
60112197 CCGGGCTAAGTCCC-AAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
60112236 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
60112275 CCGAGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
60112315 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
60112355 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
60112395 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
60112435 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
60112453 TACTTGGTTT
Statistics
Matches: 199, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
38 3 0.02
39 56 0.28
40 140 0.70
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:60117975 original size:2 final size:2
Alignment explanation
Indices: 60117965--60118010 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
60117955 GTTATGTGTG
*
60117965 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60118007 TA TA
1 TA TA
60118011 CATGAGTATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:60118572 original size:31 final size:31
Alignment explanation
Indices: 60118489--60118574 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 31
60118479 AAATTTGTAC
*
60118489 AGCACTAAGTGTGCGAG-T--TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTCAAT-ATATATAT
*
60118517 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTCAATATATATAT
60118548 AGCACTAAGTGTGCG-GACTCAATATAT
1 AGCACTAAGTGTGCGAG-CTCAATATAT
60118575 GCTTTTGCAT
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
28 17 0.33
29 1 0.02
30 3 0.06
31 30 0.59
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (31 bp):
AGCACTAAGTGTGCGAGCTCAATATATATAT
Found at i:60118574 original size:29 final size:31
Alignment explanation
Indices: 60118489--60118562 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
60118479 AAATTTGTAC
*
60118489 AGCACTAAGTGTGCGAG-T--TTGAT-TATAT
1 AGCACTAAGTGTGCGAGCTGAAT-ATATATAT
60118517 AGCACTAAGTGTGCGAGCTGAATATATATAT
1 AGCACTAAGTGTGCGAGCTGAATATATATAT
60118548 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
60118563 GACTCAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 17 0.41
29 1 0.02
30 2 0.05
31 21 0.51
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (31 bp):
AGCACTAAGTGTGCGAGCTGAATATATATAT
Found at i:60140569 original size:26 final size:26
Alignment explanation
Indices: 60140540--60140598 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 26
60140530 TGCTCAATAC
*
60140540 AGTCA-TACATCTCATAAGGGCATAAT
1 AGTCATTACACCTCAT-AGGGCATAAT
**
60140566 AGTCATTTTACCTCATAGGGCATAAT
1 AGTCATTACACCTCATAGGGCATAAT
*
60140592 AGACATT
1 AGTCATT
60140599 TATAAAATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 21 0.75
27 7 0.25
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (26 bp):
AGTCATTACACCTCATAGGGCATAAT
Found at i:60142322 original size:56 final size:56
Alignment explanation
Indices: 60142270--60142522 Score: 341
Period size: 56 Copynumber: 4.6 Consensus size: 56
60142260 TTTTACTTGT
* * * *
60142270 ACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGTA-TTACTCAC
1 ACACATATATCAGAGTCACATATTGATGCCAACGTATAAAATGTGG-ACTTACTCGC
* * * * *
60142326 ACATATATATCAGAGTCACATATTGATACCAATGTA-GAAATGTGGACTTACTCAC
1 ACACATATATCAGAGTCACATATTGATGCCAACGTATAAAATGTGGACTTACTCGC
* **
60142381 ACATATATATCAG-GTCACATATTGATGCCAACGTATAAAACATGGACTTACTCGC
1 ACACATATATCAGAGTCACATATTGATGCCAACGTATAAAATGTGGACTTACTCGC
*
60142436 ACACATATATCAGAGTCACATATTGATGCCAACATATAAAATGTGGACTTACTCGC
1 ACACATATATCAGAGTCACATATTGATGCCAACGTATAAAATGTGGACTTACTCGC
* *
60142492 ACACATATATCAAAGTCACATATCGATGCCA
1 ACACATATATCAGAGTCACATATTGATGCCA
60142523 CAAATACTTC
Statistics
Matches: 176, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
54 21 0.12
55 56 0.32
56 99 0.56
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (56 bp):
ACACATATATCAGAGTCACATATTGATGCCAACGTATAAAATGTGGACTTACTCGC
Found at i:60142409 original size:110 final size:111
Alignment explanation
Indices: 60142270--60142522 Score: 341
Period size: 110 Copynumber: 2.3 Consensus size: 111
60142260 TTTTACTTGT
* * ** *
60142270 ACACATATATCAGAATCACATATCGATGCCAACGTATTAAATGTGGTA-TTACTCACACATATAT
1 ACACATATATCAG-GTCACATATCGATGCCAACGTATAAAACATGG-ACTTACTCACACACATAT
*
60142334 ATCAGAGTCACATATTGATACC-A-ATGTAGAAATGTGGACTTACTCAC
64 ATCAGAGTCACATATTGATACCAACATATA-AAATGTGGACTTACTCAC
* * *
60142381 ACATATATATCAGGTCACATATTGATGCCAACGTATAAAACATGGACTTACTCGCACACATATAT
1 ACACATATATCAGGTCACATATCGATGCCAACGTATAAAACATGGACTTACTCACACACATATAT
* *
60142446 CAGAGTCACATATTGATGCCAACATATAAAATGTGGACTTACTCGC
66 CAGAGTCACATATTGATACCAACATATAAAATGTGGACTTACTCAC
*
60142492 ACACATATATCAAAGTCACATATCGATGCCA
1 ACACATATATC-AGGTCACATATCGATGCCA
60142523 CAAATACTTC
Statistics
Matches: 124, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
109 1 0.01
110 62 0.50
111 40 0.32
112 21 0.17
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (111 bp):
ACACATATATCAGGTCACATATCGATGCCAACGTATAAAACATGGACTTACTCACACACATATAT
CAGAGTCACATATTGATACCAACATATAAAATGTGGACTTACTCAC
Found at i:60145788 original size:93 final size:93
Alignment explanation
Indices: 60145676--60145847 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
60145666 CGCCCATAAG
* *
60145676 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60145741 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
60145769 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
60145834 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
60145848 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:60145844 original size:46 final size:46
Alignment explanation
Indices: 60145669--60145844 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
60145659 TGTAACCCGC
* * *
60145669 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
60145715 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
60145765 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
60145808 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
60145845 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:60150049 original size:2 final size:2
Alignment explanation
Indices: 60150042--60150079 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
60150032 AGGCCTCTTC
60150042 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
60150080 AAAGGCAAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:60152818 original size:42 final size:41
Alignment explanation
Indices: 60152738--60152887 Score: 153
Period size: 41 Copynumber: 3.6 Consensus size: 41
60152728 GAGCTTGGTC
60152738 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
1 TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
* *
60152779 TCGAAGGGCTTTTTAGAGCCAGTG-TCATAACCGGACTTAGTT
1 TCGAAGGGC-TTTT-GAGCCAGTGCTAATAACCGAACTTAGTT
* * * * * * *
60152821 CCGAAGGGCCTTCGAGCCAATAGTCTAAT--CCGAGCTTGGTC
1 TCGAAGGGCTTTTGAGCCAGT-G-CTAATAACCGAACTTAGTT
*
60152862 TCGAAGGGCTTTTGAGCCGGTGCTAA
1 TCGAAGGGCTTTTGAGCCAGTGCTAA
60152888 GAGTCAGACT
Statistics
Matches: 88, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
39 4 0.05
40 8 0.09
41 36 0.41
42 28 0.32
43 12 0.14
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.27
Consensus pattern (41 bp):
TCGAAGGGCTTTTGAGCCAGTGCTAATAACCGAACTTAGTT
Found at i:60152870 original size:41 final size:40
Alignment explanation
Indices: 60152718--60152887 Score: 152
Period size: 41 Copynumber: 4.2 Consensus size: 40
60152708 GCTAATCGGG
*
60152718 GTCTAAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGT
1 GTCT-AATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
* *
60152759 G-CTAATAACCGAACTTAGTTTCGAAGGGCTTTTTAGAGCCAGT
1 GTCTAAT--CCGAGCTTAGTCTCGAAGGGC-TTTT-GAGCCAGT
* * *
60152802 GTCATAA-CCG-GACTTAGT-TCCGAAGGGCCTTCGAGCCAAT
1 GTC-TAATCCGAG-CTTAGTCT-CGAAGGGCTTTTGAGCCAGT
* *
60152842 AGTCTAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCGGT
1 -GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
60152883 G-CTAA
1 GTCTAA
60152888 GAGTCAGACT
Statistics
Matches: 105, Mismatches: 12, Indels: 26
0.73 0.08 0.18
Matches are distributed among these distances:
39 7 0.07
40 13 0.12
41 49 0.47
42 23 0.22
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
GTCTAATCCGAGCTTAGTCTCGAAGGGCTTTTGAGCCAGT
Found at i:60165048 original size:29 final size:28
Alignment explanation
Indices: 60164978--60165052 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
60164968 ATACTCGATT
* *
60164978 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
60165006 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
60165035 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
60165053 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:60165069 original size:29 final size:29
Alignment explanation
Indices: 60165036--60165109 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60165026 CCTTCGAGCT
60165036 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60165065 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60165094 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60165110 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60172920 original size:29 final size:28
Alignment explanation
Indices: 60172850--60172924 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 28
60172840 ATACTCGATT
* *
60172850 TCGCACACTTAGTGCCATGCGATTTAGC
1 TCGCACACTTAGTGCCATGCCATTGAGC
* ** *
60172878 CCGCACACACAGTGCCATGCCCTTCGAGC
1 TCGCACACTTAGTGCCATGCCATT-GAGC
60172907 TCGCACACTTAGTGCCAT
1 TCGCACACTTAGTGCCAT
60172925 ATATTTCCAG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
28 19 0.51
29 18 0.49
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.23
Consensus pattern (28 bp):
TCGCACACTTAGTGCCATGCCATTGAGC
Found at i:60172941 original size:29 final size:29
Alignment explanation
Indices: 60172908--60172981 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
60172898 CCTTCGAGCT
60172908 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
60172937 TGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
60172966 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
60172982 ATCTCGTCAC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:60181288 original size:29 final size:29
Alignment explanation
Indices: 60181255--60181336 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
60181245 TGACGAGATA
*
60181255 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
60181284 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
60181313 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
60181337 AAAAAAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:60189195 original size:29 final size:29
Alignment explanation
Indices: 60189162--60189243 Score: 155
Period size: 29 Copynumber: 2.8 Consensus size: 29
60189152 TGACGAGATA
*
60189162 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
60189191 GGCACTAAGTGTGCATGCTGGAAATATAT
1 GGCACTAAGTGTGCATGCTGGAAATATAT
60189220 GGCACTAAGTGTGCATGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAA
60189244 AAAAAAATAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.29, C:0.15, G:0.30, T:0.26
Consensus pattern (29 bp):
GGCACTAAGTGTGCATGCTGGAAATATAT
Found at i:60193829 original size:26 final size:26
Alignment explanation
Indices: 60193799--60193870 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
60193789 AGATTTATTA
* *
60193799 CAAGTTGGGTTTACCAGTTGGTTTGG
1 CAAGTAGGGTTCACCAGTTGGTTTGG
*
60193825 CAAGTAGGGTTCACCAGTTGGTTTGT
1 CAAGTAGGGTTCACCAGTTGGTTTGG
*
60193851 CGAACTAGGGGTTCACCAGT
1 C-AAGTA-GGGTTCACCAGT
60193871 CAAGTTGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 24 0.60
27 4 0.10
28 12 0.30
ACGTcount: A:0.19, C:0.17, G:0.32, T:0.32
Consensus pattern (26 bp):
CAAGTAGGGTTCACCAGTTGGTTTGG
Found at i:60193882 original size:27 final size:27
Alignment explanation
Indices: 60193829--60193899 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
60193819 GTTTGGCAAG
**
60193829 TAGGGTTCACCAGT-TGGTTTGTCGAAC
1 TAGGGTTCACCAGTCAAG-TTGTCGAAC
60193856 TAGGGGTTCACCAGTCAAGTTGT-GAAC
1 TA-GGGTTCACCAGTCAAGTTGTCGAAC
*
60193883 TAGGGTTCGCCAGTCAA
1 TAGGGTTCACCAGTCAA
60193900 AGTCAAGTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
26 14 0.36
27 8 0.21
28 16 0.41
29 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (27 bp):
TAGGGTTCACCAGTCAAGTTGTCGAAC
Found at i:60193902 original size:27 final size:28
Alignment explanation
Indices: 60193847--60193899 Score: 83
Period size: 26 Copynumber: 2.0 Consensus size: 28
60193837 ACCAGTTGGT
60193847 TTGTCGAACTAGGGGTTCACCAGTCAAG
1 TTGTCGAACTAGGGGTTCACCAGTCAAG
*
60193875 TTGT-GAACTA-GGGTTCGCCAGTCAA
1 TTGTCGAACTAGGGGTTCACCAGTCAA
60193900 AGTCAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 14 0.58
27 6 0.25
28 4 0.17
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (28 bp):
TTGTCGAACTAGGGGTTCACCAGTCAAG
Found at i:60194520 original size:13 final size:13
Alignment explanation
Indices: 60194488--60194533 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
60194478 GTTTTAAAAC
* *
60194488 ATGTTTCCAAGTT
1 ATGTTTTCAAGAT
*
60194501 ATGTTTTCAAGCT
1 ATGTTTTCAAGAT
*
60194514 ATGTTTTAAAGAT
1 ATGTTTTCAAGAT
60194527 ATGTTTT
1 ATGTTTT
60194534 ATCCATGCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.26, C:0.09, G:0.15, T:0.50
Consensus pattern (13 bp):
ATGTTTTCAAGAT
Found at i:60194534 original size:13 final size:13
Alignment explanation
Indices: 60194477--60194534 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
60194467 TCTAACACTC
*
60194477 TGTTTTAAA-ACA
1 TGTTTTAAAGATA
** *
60194489 TGTTTCCAAGTTA
1 TGTTTTAAAGATA
* *
60194502 TGTTTTCAAGCTA
1 TGTTTTAAAGATA
60194515 TGTTTTAAAGATA
1 TGTTTTAAAGATA
60194528 TGTTTTA
1 TGTTTTA
60194535 TCCATGCTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
12 7 0.19
13 30 0.81
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (13 bp):
TGTTTTAAAGATA
Found at i:60194911 original size:14 final size:13
Alignment explanation
Indices: 60194883--60194907 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60194873 TATGCAAGCC
60194883 TATGTTTTTAAAG
1 TATGTTTTTAAAG
60194896 TATGTTTTTAAA
1 TATGTTTTTAAA
60194908 AGTACAGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TATGTTTTTAAAG
Found at i:60197801 original size:44 final size:42
Alignment explanation
Indices: 60197734--60197832 Score: 110
Period size: 44 Copynumber: 2.3 Consensus size: 42
60197724 CGATATGTTT
* *
60197734 TTTCGTGTAAGACCACATTTGGGACGTTGGCATCG-ATTTGGTA
1 TTTCGTGTAAGACCACATATGGGACGTAGGCATCGTATTT-G-A
** * *
60197777 TTTACGTGTAAGACCATGTATGGGATGTAGGTATCGTATTTGA
1 TTT-CGTGTAAGACCACATATGGGACGTAGGCATCGTATTTGA
60197820 TTTCGTGTAAGAC
1 TTTCGTGTAAGAC
60197833 TCTGTGTAGG
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
42 10 0.21
43 7 0.15
44 27 0.56
45 4 0.08
ACGTcount: A:0.23, C:0.13, G:0.27, T:0.36
Consensus pattern (42 bp):
TTTCGTGTAAGACCACATATGGGACGTAGGCATCGTATTTGA
Found at i:60200822 original size:40 final size:39
Alignment explanation
Indices: 60200723--60200873 Score: 171
Period size: 40 Copynumber: 3.8 Consensus size: 39
60200713 TGGATGATAA
* * * * *
60200723 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
60200762 CCCGGGC-AAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
60200802 CCGGGCTAAGTCCCGAAGGCAATTGTACGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA--CTAAT
* *
60200842 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
60200874 AGCTATATCC
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 31 0.32
40 61 0.64
41 2 0.02
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:60207538 original size:28 final size:29
Alignment explanation
Indices: 60207465--60207538 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 29
60207455 ATAGTGAATC
*
60207465 CGCACACTTAGTGCTATATATATATTCAGCT
1 CGCACACTTAGTGCTATATATATA-T-AACT
60207496 CGCACACTTAGTGCTATATA-ATCA-AACT
1 CGCACACTTAGTGCTATATATAT-ATAACT
*
60207524 CTCACACTTAGTGCT
1 CGCACACTTAGTGCT
60207539 GTACAATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 17 0.43
30 2 0.05
31 21 0.52
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATATATAACT
Found at i:60207562 original size:30 final size:29
Alignment explanation
Indices: 60207464--60207567 Score: 102
Period size: 28 Copynumber: 3.5 Consensus size: 29
60207454 TATAGTGAAT
* *
60207464 CCGCACACTTAGTGCTATATATATATTCAGC
1 CCGCACACTTAGTGCTATATA-AT-TTAAAC
* *
60207495 TCGCACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATTTAAAC
* * * *
60207523 TCTCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATAA-TTTAAAC
60207553 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
60207568 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
28 22 0.36
30 19 0.31
31 20 0.33
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATATAATTTAAAC
Found at i:60211876 original size:40 final size:40
Alignment explanation
Indices: 60211777--60211960 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 40
60211767 TGGATGATAA
* * ** * *
60211777 CCGGGCTAAGTCCCGAAGGCATCTGCGTTAGTGACT-AGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
60211816 CCCGGGC-AAGTCTCGAAGGCATTTGTGCGAGTTACTAAAT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
60211856 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
60211896 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
*
60211936 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
60211961 AGTGAGTAGC
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
39 29 0.22
40 98 0.76
41 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:60214716 original size:46 final size:46
Alignment explanation
Indices: 60214666--60214934 Score: 253
Period size: 46 Copynumber: 5.8 Consensus size: 46
60214656 TGGTTGAGCA
*
60214666 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * * *
60214712 TCCGAACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* **
60214757 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * * *
60214805 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGG
* * * *
60214850 CATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
* * *
60214898 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60214935 GCGGGTTACA
Statistics
Matches: 180, Mismatches: 29, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
43 12 0.07
45 7 0.04
46 89 0.49
47 54 0.30
48 7 0.04
50 11 0.06
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGG
Found at i:60214774 original size:47 final size:47
Alignment explanation
Indices: 60214716--60214880 Score: 212
Period size: 47 Copynumber: 3.5 Consensus size: 47
60214706 CAAATGTCCG
60214716 AACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
1 AACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
* * * * *
60214763 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--TATCCA
1 AACTCGTTGAGTTAAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCA
* *
60214809 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
60214856 AACTCGTTGAGTTAAGTCCGAGTTC
1 AACTCGTTGAGTTAAGTCCGAGTTC
60214881 ACTCATGGAT
Statistics
Matches: 100, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 30 0.30
47 52 0.52
48 3 0.03
50 6 0.06
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (47 bp):
AACTCGTTGAGTTAAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
Found at i:60214827 original size:93 final size:93
Alignment explanation
Indices: 60214663--60214927 Score: 440
Period size: 93 Copynumber: 2.8 Consensus size: 93
60214653 GGATGGTTGA
60214663 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
*
60214728 TAAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
60214756 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
60214821 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * * * *
60214849 GCATCCGAACTCGTTGAGTTAAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
60214914 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
60214928 CTTATGGGCG
Statistics
Matches: 159, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 159 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:60216598 original size:20 final size:22
Alignment explanation
Indices: 60216561--60216608 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
60216551 AAATAATGAG
*
60216561 AATT-TATGTTCTAAGAAT-A-
1 AATTCTATTTTCTAAGAATTAC
*
60216580 AATTCTATTTTCTAGGAATTAC
1 AATTCTATTTTCTAAGAATTAC
60216602 AATTCTA
1 AATTCTA
60216609 CTAATTTCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 1 0.04
22 7 0.29
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (22 bp):
AATTCTATTTTCTAAGAATTAC
Found at i:60217409 original size:23 final size:23
Alignment explanation
Indices: 60217379--60217424 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
60217369 AATAGATTAC
60217379 GGGTCCTCGTGCTATGAAGTGAT
1 GGGTCCTCGTGCTATGAAGTGAT
*
60217402 GGGTCCTCTTGCTATGAAGTGAT
1 GGGTCCTCGTGCTATGAAGTGAT
60217425 CATACTGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (23 bp):
GGGTCCTCGTGCTATGAAGTGAT
Found at i:60224963 original size:17 final size:16
Alignment explanation
Indices: 60224941--60224975 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
60224931 AACATACTTT
*
60224941 TTTCATACACTCATTCA
1 TTTCATACAATCA-TCA
60224958 TTTCATACAATCATCA
1 TTTCATACAATCATCA
60224974 TT
1 TT
60224976 CAAATTCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (16 bp):
TTTCATACAATCATCA
Found at i:60228908 original size:56 final size:55
Alignment explanation
Indices: 60228823--60228930 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 55
60228813 TTATAGCTTG
*
60228823 CAAATTAATTATTCATGAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
1 CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
*
60228878 CAAATTTAATTATTCATAAGTACTATTCAAATTAAAAGTGATGATTTATCATC
1 CAAA-TTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATC
60228931 CAATGGACAC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
55 4 0.08
56 46 0.92
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39
Consensus pattern (55 bp):
CAAATTAATTATTCATAAGCACTATTCAAATTAAAAGTGATGATTTATCATCTTA
Found at i:60235039 original size:28 final size:28
Alignment explanation
Indices: 60234952--60235039 Score: 65
Period size: 28 Copynumber: 3.1 Consensus size: 28
60234942 ATTGCAAATT
*
60234952 AATTATTCATGAGCACTATTCAAATTAA
1 AATTATTCATAAGCACTATTCAAATTAA
* * ** * *
60234980 AAGTGA-TGATTTGTCA-TATTACAAGTT-T
1 AA-TTATTCATAAG-CACTATT-CAAATTAA
60235008 AATTATTCATAAGCACTATTCAAATTAA
1 AATTATTCATAAGCACTATTCAAATTAA
60235036 AATT
1 AATT
60235040 GATGATTTAT
Statistics
Matches: 42, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
27 9 0.21
28 24 0.57
29 9 0.21
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (28 bp):
AATTATTCATAAGCACTATTCAAATTAA
Found at i:60235202 original size:26 final size:26
Alignment explanation
Indices: 60235173--60235222 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
60235163 TGGTGCTCAT
*
60235173 AAAATGTACAATTACAATCAATCTAC
1 AAAATATACAATTACAATCAATCTAC
60235199 AAAATATACAATTACAATCAATCT
1 AAAATATACAATTACAATCAATCT
60235223 TATTTTCAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.18, G:0.02, T:0.28
Consensus pattern (26 bp):
AAAATATACAATTACAATCAATCTAC
Found at i:60240320 original size:46 final size:46
Alignment explanation
Indices: 60240267--60240438 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
60240257 TGGGCATCCA
60240267 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCG
* * *
60240313 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG-GCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGAGCGC--CCG
* *
60240360 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCG
* *
60240406 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
60240439 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
43 4 0.04
45 4 0.04
46 63 0.58
47 29 0.27
48 4 0.04
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.28
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCG
Found at i:60240418 original size:93 final size:93
Alignment explanation
Indices: 60240259--60240431 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
60240249 GGGATATTTG
*
60240259 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGCCCGAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60240324 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
60240352 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
60240417 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
60240432 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:60241794 original size:48 final size:48
Alignment explanation
Indices: 60241739--60241952 Score: 215
Period size: 48 Copynumber: 4.5 Consensus size: 48
60241729 AAGGCGTTAC
* * *
60241739 AGACCATGTCTAGGACATGGCACCGGTCTCGATATGTGACCTAGTGTA
1 AGACCATGTCTAGGACATGGCATCAGTCTCGATATGTGAGCTAGTGTA
* * * *
60241787 AGACCATGT-TTGGAACATGGCATCAGTATTGATATGAGAGCTAGTGTA
1 AGACCATGTCTAGG-ACATGGCATCAGTCTCGATATGTGAGCTAGTGTA
* * *
60241835 AGACCATGTCTGGGACACGGCATCAGCCTCGATATGTGAGCTAGTGTA
1 AGACCATGTCTAGGACATGGCATCAGTCTCGATATGTGAGCTAGTGTA
* * * * *
60241883 AGACCATGT-TTGGAACATGACATTAG-CAT-GATATGAGAGCCAGTGTA
1 AGACCATGTCTAGG-ACATGGCATCAGTC-TCGATATGTGAGCTAGTGTA
60241930 AGACCAT-TCT-GAGACATGGCATC
1 AGACCATGTCTAG-GACATGGCATC
60241953 GATATCTTAC
Statistics
Matches: 139, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
46 10 0.07
47 32 0.23
48 94 0.68
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
AGACCATGTCTAGGACATGGCATCAGTCTCGATATGTGAGCTAGTGTA
Found at i:60246303 original size:41 final size:41
Alignment explanation
Indices: 60246258--60246345 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
60246248 GAGCAACATC
* *
60246258 AAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTA
1 AAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGTA
60246299 AAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGTA
1 AAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGTA
60246340 AAACGC
1 AAACGC
60246346 TACTAAAAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (41 bp):
AAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTAGTA
Found at i:60246585 original size:49 final size:46
Alignment explanation
Indices: 60246527--60246623 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 46
60246517 GTTTAAGGTT
* *
60246527 TATGGTTTAAGATATATGATTTAGGGTTTAAGCAGGTTTATGAGTTAAC
1 TATGGTTTAAGATATACGATTTAGGGTTT-A--AGGTTTAAGAGTTAAC
*
60246576 TATGGTTTAAGATATACGGTTTAGGGTTTAAGGTTTAAGAGTTAAC
1 TATGGTTTAAGATATACGATTTAGGGTTTAAGGTTTAAGAGTTAAC
60246622 TA
1 TA
60246624 GTATTTGAAG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 17 0.38
48 1 0.02
49 27 0.60
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (46 bp):
TATGGTTTAAGATATACGATTTAGGGTTTAAGGTTTAAGAGTTAAC
Found at i:60247192 original size:14 final size:14
Alignment explanation
Indices: 60247169--60247213 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
60247159 TTAATTATCA
*
60247169 TTATAGTTTAGGAT
1 TTATAGTTTAGGGT
*
60247183 TTATAATTTAGGGT
1 TTATAGTTTAGGGT
*
60247197 GTATAGTTTAGGGT
1 TTATAGTTTAGGGT
60247211 TTA
1 TTA
60247214 ATTTTTAGTG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:60247321 original size:6 final size:6
Alignment explanation
Indices: 60247310--60247359 Score: 91
Period size: 6 Copynumber: 8.3 Consensus size: 6
60247300 ACACAACTAT
*
60247310 TTTATA TTTATA TTTATA TTTATA TTTGTA TTTATA TTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA
60247358 TT
1 TT
60247360 GCATACATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (6 bp):
TTTATA
Found at i:60247572 original size:10 final size:10
Alignment explanation
Indices: 60247557--60247595 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
60247547 AAATTTTGAA
60247557 AGAAAAAAAT
1 AGAAAAAAAT
60247567 AGAAAAAAAT
1 AGAAAAAAAT
*
60247577 ATGATAAAAAT
1 A-GAAAAAAAT
60247588 -GAAAAAAA
1 AGAAAAAAA
60247596 ATTAAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 7 0.27
10 11 0.42
11 8 0.31
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (10 bp):
AGAAAAAAAT
Found at i:60250537 original size:2 final size:2
Alignment explanation
Indices: 60250530--60250554 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
60250520 GTGATTTTAG
60250530 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
60250555 GTTTTCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60250641 original size:20 final size:20
Alignment explanation
Indices: 60250616--60250655 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
60250606 CTAAATCTGG
60250616 GAATTGGAGCAAGGAAGTGA
1 GAATTGGAGCAAGGAAGTGA
60250636 GAATTGGAGCAAGGAAGTGA
1 GAATTGGAGCAAGGAAGTGA
60250656 AGTATGAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.40, T:0.15
Consensus pattern (20 bp):
GAATTGGAGCAAGGAAGTGA
Found at i:60254224 original size:32 final size:32
Alignment explanation
Indices: 60254183--60254248 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
60254173 CATACATGTT
*
60254183 TAATTAGTTCAGATATTTCAAGCTCTTTGAAC
1 TAATTAGTTCAGATATTTCAAGCACTTTGAAC
*
60254215 TAATTAGTTCAGATATTTCAAGCAGTTTGAAC
1 TAATTAGTTCAGATATTTCAAGCACTTTGAAC
60254247 TA
1 TA
60254249 TTGGAAGTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (32 bp):
TAATTAGTTCAGATATTTCAAGCACTTTGAAC
Found at i:60257319 original size:54 final size:51
Alignment explanation
Indices: 60257235--60257442 Score: 154
Period size: 54 Copynumber: 4.0 Consensus size: 51
60257225 AAATTCGAAA
* *
60257235 AAAAAAAGTTTTTGGGTTTGAGCAAAGTAAAAGTTTTGAGGGAAAGCAAAAG
1 AAAAAAAGTTTTGGGGTTTGAGCGAAGTAAAAGTTTTGAGGGAAAG-AAAAG
* * *
60257287 AAAAAAAGTTTTAGGGGTTTGGGAG-GAAGTAAAAATTTTGTGGAAAAGTAAAAG
1 AAAAAAAGTTTT-GGGGTTT--GAGCGAAGTAAAAGTTTTGAGGGAAAG-AAAAG
* * * * **
60257341 GAAAAAGGTTTTGAGGGTTTAAGTGAAGTGGAAGTTTTGAGAGGAAAATGAAAAGG
1 AAAAAAAGTTTTG-GGGTTTGAGCGAAGTAAAAGTTTTGAG-GG-AAA-GAAAA-G
* * * **
60257397 AAAAAAA--TTTGGGGTTTGGGAGAAGT-AAATTTTTTTGGGAAAGAAA
1 AAAAAAAGTTTTGGGGTTTGAGCGAAGTAAAAGTTTTGAGGGAAAGAAA
60257443 GAGGGTTTGA
Statistics
Matches: 124, Mismatches: 23, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
49 4 0.03
50 3 0.02
51 2 0.02
52 21 0.17
53 32 0.26
54 45 0.36
55 10 0.08
56 7 0.06
ACGTcount: A:0.42, C:0.01, G:0.30, T:0.26
Consensus pattern (51 bp):
AAAAAAAGTTTTGGGGTTTGAGCGAAGTAAAAGTTTTGAGGGAAAGAAAAG
Found at i:60259575 original size:15 final size:15
Alignment explanation
Indices: 60259555--60259584 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
60259545 TGAATTTATG
60259555 TTTGAATAAGTTTAA
1 TTTGAATAAGTTTAA
*
60259570 TTTGAATATGTTTAA
1 TTTGAATAAGTTTAA
60259585 ATCAAAAACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
TTTGAATAAGTTTAA
Found at i:60260392 original size:43 final size:43
Alignment explanation
Indices: 60260331--60260589 Score: 362
Period size: 43 Copynumber: 6.0 Consensus size: 43
60260321 TATATGTGAT
*
60260331 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* *
60260374 ATCGATATGTAATTATGTGTAAAACCAAGTCTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* *
60260417 ATCGATATGTAATTATGTGTAAGACCACGTCTAGGACGTTTGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* *
60260460 ATCGATATGTAATTATGTTTAAGACCA-GTTTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
* * *
60260502 ATCGATATGTGATTACGTGTAAGA-CATTGTCTGGGACAG-TGGC
1 ATCGATATGTAATTATGTGTAAGACCA-CGTCTGGGAC-GTTGGC
* **
60260545 ATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGC
1 ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
60260588 AT
1 AT
60260590 TGTATGATAT
Statistics
Matches: 194, Mismatches: 17, Indels: 10
0.88 0.08 0.05
Matches are distributed among these distances:
41 2 0.01
42 34 0.18
43 155 0.80
44 3 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATCGATATGTAATTATGTGTAAGACCACGTCTGGGACGTTGGC
Found at i:60260566 original size:128 final size:129
Alignment explanation
Indices: 60260331--60260589 Score: 371
Period size: 128 Copynumber: 2.0 Consensus size: 129
60260321 TATATGTGAT
*
60260331 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTATGTGTAA
1 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTACGTGTAA
** *
60260396 AACCAAGTCTGGGACGTTGGCATCGATATGTAATTATGTGTAAGACCACGTCTAGGACGTTTGC
66 AACCAAGTCTGGGACGTTGGCATCGATATGTAATTACATGTAAGACCACGTCTAGGACGTTGGC
* * * *
60260460 ATCGATATGTAATTATGTTTAAGACCA-GTTTGGGACGTTGGCATCGATATGTGATTACGTGTAA
1 ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTACGTGTAA
* * * *
60260524 GA-CATTGTCTGGGACAG-TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGG
66 AACCA-AGTCTGGGAC-GTTGGCATCGATATGTAATTACATGTAAGACCACGTCTAGGACGTTGG
60260587 C
129 C
60260588 AT
1 AT
60260590 TGTATGATAT
Statistics
Matches: 116, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
127 2 0.02
128 87 0.75
129 27 0.23
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (129 bp):
ATCGATATGTAATTATGTGTAAGACCACATCTGGGACGTTGGCATCGATATGTAATTACGTGTAA
AACCAAGTCTGGGACGTTGGCATCGATATGTAATTACATGTAAGACCACGTCTAGGACGTTGGC
Found at i:60263461 original size:27 final size:27
Alignment explanation
Indices: 60263430--60263785 Score: 372
Period size: 27 Copynumber: 13.4 Consensus size: 27
60263420 TACTAGAATA
*
60263430 ACCGAAATACCCCAATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* * *
60263457 ACCGAAATACCTCTGTAGGGTAAAAGG
1 ACCGAAATACCCCTATAGGGTAAAATG
*
60263484 ACCAAAATACCCC-ATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
60263510 ACCAAAATACCCCTGTAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
*** *
60263537 A---AAGATACTTTTGTAGGGTAAAATG
1 ACCGAA-ATACCCCTATAGGGTAAAATG
* *
60263562 ATCGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
60263589 ACCAAAATACCCCTGTAGGGTAAAAT-
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
60263615 AAC-AAATACCCCT-GAGGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
*
60263640 ATCGAAATACCCCTATATAGGGTAAAATG
1 ACCGAAATACCCC--TATAGGGTAAAATG
* * *
60263669 ACCGAAATACCCCCATTGGATAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
* *
60263696 ACCGAAATACCCCTGTAAGGTAAAATG
1 ACCGAAATACCCCTATAGGGTAAAATG
60263723 ACCGAAATA-CCCTATAGGGTAAAAT-
1 ACCGAAATACCCCTATAGGGTAAAATG
*
60263748 AACGAAAATACCCC-ATAGGGTAAAATG
1 ACCG-AAATACCCCTATAGGGTAAAATG
* *
60263775 ACTGTAATACC
1 ACCGAAATACC
60263786 TTGTAAGGTA
Statistics
Matches: 276, Mismatches: 40, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
24 12 0.04
25 34 0.12
26 72 0.26
27 132 0.48
28 3 0.01
29 23 0.08
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.19
Consensus pattern (27 bp):
ACCGAAATACCCCTATAGGGTAAAATG
Found at i:60264249 original size:34 final size:34
Alignment explanation
Indices: 60264202--60264266 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
60264192 ATTACTGCAC
* *
60264202 TGATACTGTTACTGTAATGGGCTAAGACCCACAT
1 TGATACTGATACTGTAACGGGCTAAGACCCACAT
*
60264236 TGATACTGATACTGTAACGGGCTTAGACCCA
1 TGATACTGATACTGTAACGGGCTAAGACCCA
60264267 AACTGCATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (34 bp):
TGATACTGATACTGTAACGGGCTAAGACCCACAT
Found at i:60267106 original size:81 final size:80
Alignment explanation
Indices: 60266940--60267424 Score: 490
Period size: 80 Copynumber: 6.0 Consensus size: 80
60266930 CTATGTTGGG
* * * * *
60266940 CCGAAATACCCCCATAGGGTAAAATGACCAAAATACCTCCATAGGGTAAAATGATCGAAATACCC
1 CCGAAATA-CCCCATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCC
*
60267005 CTTTAGGGTAAAATGA
65 CTATAGGGTAAAATGA
* * *
60267021 TCGAAATACCCCATAAGGTAAAATGATCGAAATACCCCCATAAGGTAAAATGACCAAAATACCCC
1 CCGAAATACCCCATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATA-CCC
*
60267086 CCATAGGGTAAAATGA
65 CTATAGGGTAAAATGA
* * *** * *
60267102 TCGAAATACCCCTATAAGGTAAAATGATCGAAATACCCTTGTAGGGTAAAATGATCGAAATACCC
1 CCGAAATACCCC-ATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCC
* *
60267167 TTGTAGGGTAAAATGA
65 CTATAGGGTAAAATGA
60267183 CCGAAATACCCC-TAAGGGTAAAATGACCGAAATACCCCCAT-AGGATAAAATGACCGAAATACC
1 CCGAAATACCCCATAA-GGTAAAATGACCGAAATACCCCCATAAGG-TAAAATGACCGAAATACC
*
60267246 CCTGTAGGGTAAAATGA
64 CCTATAGGGTAAAATGA
* * * * ** * *
60267263 CCGAAATACCCCTGTAGGGTAAAATAACTGAAATACCCCTGTAAAGTAAAATGACTGAAATACCC
1 CCGAAATACCCC-ATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCC
* *
60267328 CCATAGGGTAAAATAA
65 CTATAGGGTAAAATGA
* * * * * * *** * * *
60267344 CTGAAATACCCCTGTAGGGT-AAATGACTGTAATACTCTTGTAGGGTAAAATGACTGTAATACCC
1 CCGAAATACCCC-ATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCC
* *
60267408 CTGTAAGGTAAAATGA
65 CTATAGGGTAAAATGA
60267424 C
1 C
60267425 TGATTTGCCC
Statistics
Matches: 348, Mismatches: 49, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
79 5 0.01
80 162 0.47
81 134 0.39
82 47 0.14
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (80 bp):
CCGAAATACCCCATAAGGTAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCC
TATAGGGTAAAATGA
Found at i:60267368 original size:107 final size:107
Alignment explanation
Indices: 60266940--60267427 Score: 547
Period size: 107 Copynumber: 4.5 Consensus size: 107
60266930 CTATGTTGGG
** * *
60266940 CCGAAATACCCCCATAGGGTAAAATGACCAAAATACCTCCATAGGGTAAAATGA-TCGAAATACC
1 CCGAAATACCCCTGTAGGGTAAAATGACCGAAATACC-CCATAAGGTAAAATGACT-GAAATACC
** * *
60267004 CCTTTAGGGTAAAATGATCGAAATACCCC-ATAAGGTAAAATGA
64 CCCATAGGGTAAAATGATCGAAATACCCCTGTAGGGTAAAATGA
* ** * * *
60267047 TCGAAATACCCCCATAAGGTAAAATGACCAAAATACCCCCCATAGGGTAAAATGA-TCGAAATAC
1 CCGAAATACCCCTGTAGGGTAAAATGACCGAAATA--CCCCATAAGGTAAAATGACT-GAAATAC
* * *
60267111 CCCTATAAGGTAAAATGATCGAAATACCCTTGTAGGGTAAAATGA
63 CCCCATAGGGTAAAATGATCGAAATACCCCTGTAGGGTAAAATGA
* * *
60267156 TCGAAATACCCTTGTAGGGTAAAATGACCGAAATACCCC-TAAGGGTAAAATGACCGAAATACCC
1 CCGAAATACCCCTGTAGGGTAAAATGACCGAAATACCCCATAA-GGTAAAATGACTGAAATACCC
* *
60267220 CCATAGGATAAAATGACCGAAATACCCCTGTAGGGTAAAATGA
65 CCATAGGGTAAAATGATCGAAATACCCCTGTAGGGTAAAATGA
* * * *
60267263 CCGAAATACCCCTGTAGGGTAAAATAACTGAAATACCCCTGTAAAGTAAAATGACTGAAATACCC
1 CCGAAATACCCCTGTAGGGTAAAATGACCGAAATACCCC-ATAAGGTAAAATGACTGAAATACCC
*
60267328 CCATAGGGTAAAAT-AACTGAAATACCCCTGTAGGGT-AAATGA
65 CCATAGGGTAAAATGATC-GAAATACCCCTGTAGGGTAAAATGA
* * * * * * *
60267370 CTGTAATACTCTTGTAGGGTAAAATGACTGTAATACCCCTGTAAGGTAAAATGACTGA
1 CCGAAATACCCCTGTAGGGTAAAATGACCGAAATACCCC-ATAAGGTAAAATGACTGA
60267428 TTTGCCCTAC
Statistics
Matches: 339, Mismatches: 34, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
106 2 0.01
107 188 0.55
108 102 0.30
109 47 0.14
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (107 bp):
CCGAAATACCCCTGTAGGGTAAAATGACCGAAATACCCCATAAGGTAAAATGACTGAAATACCCC
CATAGGGTAAAATGATCGAAATACCCCTGTAGGGTAAAATGA
Found at i:60267425 original size:27 final size:27
Alignment explanation
Indices: 60266942--60267427 Score: 488
Period size: 27 Copynumber: 18.1 Consensus size: 27
60266932 ATGTTGGGCC
** *
60266942 GAAATACCCCCATAGGGTAAAATGACC
1 GAAATACCCCTGTAGGGTAAAATGACT
* *
60266969 AAAATACCTCC-ATAGGGTAAAATGA-T
1 GAAATACC-CCTGTAGGGTAAAATGACT
*
60266995 CGAAATACCCCTTTAGGGTAAAATGA-T
1 -GAAATACCCCTGTAGGGTAAAATGACT
* *
60267022 CGAAATACCCC-ATAAGGTAAAATGA-T
1 -GAAATACCCCTGTAGGGTAAAATGACT
** * *
60267048 CGAAATACCCCCATAAGGTAAAATGACC
1 -GAAATACCCCTGTAGGGTAAAATGACT
* **
60267076 AAAATACCCCCCATAGGGTAAAATGA-T
1 GAAATA-CCCCTGTAGGGTAAAATGACT
* *
60267103 CGAAATACCCCTATAAGGTAAAATGA-T
1 -GAAATACCCCTGTAGGGTAAAATGACT
*
60267130 CGAAATACCCTTGTAGGGTAAAATGA-T
1 -GAAATACCCCTGTAGGGTAAAATGACT
* *
60267157 CGAAATACCCTTGTAGGGTAAAATGACC
1 -GAAATACCCCTGTAGGGTAAAATGACT
* *
60267185 GAAATACCCCT-AAGGGTAAAATGACC
1 GAAATACCCCTGTAGGGTAAAATGACT
** * *
60267211 GAAATACCCCCATAGGATAAAATGACC
1 GAAATACCCCTGTAGGGTAAAATGACT
*
60267238 GAAATACCCCTGTAGGGTAAAATGACC
1 GAAATACCCCTGTAGGGTAAAATGACT
*
60267265 GAAATACCCCTGTAGGGTAAAATAACT
1 GAAATACCCCTGTAGGGTAAAATGACT
**
60267292 GAAATACCCCTGTAAAGTAAAATGACT
1 GAAATACCCCTGTAGGGTAAAATGACT
** *
60267319 GAAATACCCCCATAGGGTAAAATAACT
1 GAAATACCCCTGTAGGGTAAAATGACT
60267346 GAAATACCCCTGTAGGGT-AAATGACT
1 GAAATACCCCTGTAGGGTAAAATGACT
* * *
60267372 GTAATACTCTTGTAGGGTAAAATGACT
1 GAAATACCCCTGTAGGGTAAAATGACT
* *
60267399 GTAATACCCCTGTAAGGTAAAATGACT
1 GAAATACCCCTGTAGGGTAAAATGACT
60267426 GA
1 GA
60267428 TTTGCCCTAC
Statistics
Matches: 404, Mismatches: 45, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
26 72 0.18
27 307 0.76
28 25 0.06
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAAAATGACT
Found at i:60267427 original size:134 final size:135
Alignment explanation
Indices: 60266940--60267423 Score: 606
Period size: 134 Copynumber: 3.6 Consensus size: 135
60266930 CTATGTTGGG
** *
60266940 CCGAAATACCCCCATAGGGTAAAATGACCAAAATACCTCC-ATAGGGTAAAATGATCGAAATACC
1 CCGAAATACCCCCATAGGGTAAAATGACTGAAATACC-CCTGTAGGGTAAAATGATCGAAATACC
* * *
60267004 CCTTTAGGGTAAAATGATCGAAATACCCC-ATAAGGTAAAATGA-TCGAAATACCCCCATAAGGT
65 CCTGTAGGGTAAAATGATCGAAATACCCCTGTAAGGTAAAATGACT-GAAATACCCCCATAGGGT
60267067 AAAATGA
129 AAAATGA
* * *
60267074 CCAAAATACCCCCCATAGGGTAAAATGA-TCGAAATACCCCTATAAGGTAAAATGATCGAAATAC
1 CCGAAATA-CCCCCATAGGGTAAAATGACT-GAAATACCCCTGTAGGGTAAAATGATCGAAATAC
* * * * *
60267138 CCTTGTAGGGTAAAATGATCGAAATACCCTTGTAGGGTAAAATGACCGAAATACCCCTA-AGGGT
64 CCCTGTAGGGTAAAATGATCGAAATACCCCTGTAAGGTAAAATGACTGAAATACCCCCATAGGGT
60267202 AAAATGA
129 AAAATGA
* * *
60267209 CCGAAATACCCCCATAGGATAAAATGACCGAAATACCCCTGTAGGGTAAAATGACCGAAATACCC
1 CCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGATCGAAATACCC
* *
60267274 CTGTAGGGTAAAAT-AACTGAAATACCCCTGTAAAGTAAAATGACTGAAATACCCCCATAGGGTA
66 CTGTAGGGTAAAATGATC-GAAATACCCCTGTAAGGTAAAATGACTGAAATACCCCCATAGGGTA
*
60267338 AAATAA
130 AAATGA
* ** * * * *
60267344 CTGAAATACCCCTGTAGGGT-AAATGACTGTAATACTCTTGTAGGGTAAAATGA-CTGTAATACC
1 CCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGATC-GAAATACC
*
60267407 CCTGTAAGGTAAAATGA
65 CCTGTAGGGTAAAATGA
60267424 CTGATTTGCC
Statistics
Matches: 304, Mismatches: 36, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
133 3 0.01
134 157 0.52
135 121 0.40
136 23 0.08
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (135 bp):
CCGAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTGTAGGGTAAAATGATCGAAATACCC
CTGTAGGGTAAAATGATCGAAATACCCCTGTAAGGTAAAATGACTGAAATACCCCCATAGGGTAA
AATGA
Found at i:60267835 original size:34 final size:34
Alignment explanation
Indices: 60267788--60267857 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 34
60267778 ATTACTGCAC
* *
60267788 TGATACTGTTACTGTAATGGGCTAAGGCCCACAT
1 TGATACTGATACTGTAATGGGCTAAGGCCCAAAT
** *
60267822 TGATACTGATACTGTAATTTGCTCAGGCCCAAAT
1 TGATACTGATACTGTAATGGGCTAAGGCCCAAAT
60267856 TG
1 TG
60267858 CATCTATCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (34 bp):
TGATACTGATACTGTAATGGGCTAAGGCCCAAAT
Found at i:60273331 original size:40 final size:40
Alignment explanation
Indices: 60273246--60273396 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
60273236 AATTGAATGA
* * * *
60273246 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
60273286 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
60273327 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
60273366 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
60273397 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:60273410 original size:40 final size:40
Alignment explanation
Indices: 60273283--60273412 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
60273273 ATGCTGGAAA
* * *
60273283 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
60273323 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
60273363 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
60273403 TTATATCCGG
1 TTATATCCGG
60273413 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:60273411 original size:80 final size:80
Alignment explanation
Indices: 60273245--60273412 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
60273235 AAATTGAATG
* *
60273245 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
60273310 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
60273325 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
60273388 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
60273405 ATATCCGG
1 ATATCCGG
60273413 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:60279661 original size:40 final size:40
Alignment explanation
Indices: 60279602--60279809 Score: 218
Period size: 40 Copynumber: 5.2 Consensus size: 40
60279592 CAATTGAATG
* * * *
60279602 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * * *
60279642 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
60279682 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
60279722 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
60279762 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
60279802 ATATCCGG
1 ATATCCGG
60279810 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:60279740 original size:80 final size:80
Alignment explanation
Indices: 60279603--60279809 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
60279593 AATTGAATGA
* * ** * * *
60279603 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
60279668 TTGTGCTAGT-G-AC
66 TTGTGCAAGTCGTAC
* * *
60279681 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
60279746 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGTCGTAC
* *
60279763 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
60279810 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTCGTAC
Found at i:60287635 original size:40 final size:40
Alignment explanation
Indices: 60287576--60287783 Score: 236
Period size: 40 Copynumber: 5.2 Consensus size: 40
60287566 CAATTGAATG
* * * * *
60287576 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * * *
60287616 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
60287656 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * *
60287696 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
* * * *
60287736 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
60287776 ATATCCGG
1 ATATCCGG
60287784 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAGTT
Found at i:60293026 original size:39 final size:39
Alignment explanation
Indices: 60292972--60293173 Score: 314
Period size: 39 Copynumber: 5.2 Consensus size: 39
60292962 TGTGTATGAA
*
60292972 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
60293011 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGTAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
60293050 TGTACGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
60293089 GGTGCGAGCTATGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
60293128 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
60293168 TGTGCG
1 TGTGCG
60293174 GGTTACCATA
Statistics
Matches: 147, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 130 0.88
40 17 0.12
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:60294704 original size:29 final size:29
Alignment explanation
Indices: 60294603--60294703 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 29
60294593 CGGGGTGTTA
60294603 CACTAAGTGTGCGAACTTAAATTATATGG
1 CACTAAGTGTGCGAACTTAAATTATATGG
*
60294632 CACTAAGTGTGCAAACTTAAATTATATGG
1 CACTAAGTGTGCGAACTTAAATTATATGG
* * ***
60294661 CACTATGTGTGCGAGCTTAAATCGCATGG
1 CACTAAGTGTGCGAACTTAAATTATATGG
60294690 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
60294704 GATCGTTTAT
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.29
Consensus pattern (29 bp):
CACTAAGTGTGCGAACTTAAATTATATGG
Found at i:60297425 original size:22 final size:22
Alignment explanation
Indices: 60297383--60297452 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
60297373 GCACTAAGTC
* *
60297383 AACAAGACGACTCAATA-CCGTA
1 AACAAGACAACAC-ATAGCCGTA
*
60297405 GACAAGACAACACATAGCCGTA
1 AACAAGACAACACATAGCCGTA
* *
60297427 AACAGGACAGCACATAGCCGTA
1 AACAAGACAACACATAGCCGTA
60297449 AACA
1 AACA
60297453 TCGTAGCAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 3 0.07
22 38 0.93
ACGTcount: A:0.46, C:0.27, G:0.17, T:0.10
Consensus pattern (22 bp):
AACAAGACAACACATAGCCGTA
Found at i:60297683 original size:22 final size:22
Alignment explanation
Indices: 60297655--60297718 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
60297645 GCAAATTCGT
60297655 TTGGCACATAACCATAATCA-GG
1 TTGGCACA-AACCATAATCATGG
* *
60297677 TTGGCACAGAGCCAT-ATAATGG
1 TTGGCACA-AACCATAATCATGG
*
60297699 TTGGCGCAAAGCCATAATCA
1 TTGGCACAAA-CCATAATCA
60297719 AAATAATTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
21 4 0.12
22 26 0.79
23 3 0.09
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAACCATAATCATGG
Found at i:60297920 original size:41 final size:41
Alignment explanation
Indices: 60297861--60297983 Score: 192
Period size: 41 Copynumber: 3.0 Consensus size: 41
60297851 TAAAACCCAC
*
60297861 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* * *
60297902 CGGTGGATCCACGGTCGTCAACCAACCATGCAATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
* *
60297943 CGGTGGATCCACGATTGTCAAGGAACCATGCGATCCTCAAT
1 CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
60297984 TTCTTTCTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGATCGTCAAGCAACCATGCGATCCTCAAT
Found at i:60298252 original size:27 final size:27
Alignment explanation
Indices: 60298234--60298287 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
60298224 GGGTGTTTTG
60298234 GTAAATCTACAAACTAAGGGTATTTCT
1 GTAAATCTACAAACTAAGGGTATTTCT
* * *
60298261 GTAATTTTACAAACTAATGGTATTTCT
1 GTAAATCTACAAACTAAGGGTATTTCT
60298288 AAAATTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (27 bp):
GTAAATCTACAAACTAAGGGTATTTCT
Found at i:60298366 original size:27 final size:27
Alignment explanation
Indices: 60298249--60298562 Score: 174
Period size: 27 Copynumber: 11.7 Consensus size: 27
60298239 TCTACAAACT
* *
60298249 AAGGGTATTTCTGTAATTTTACAAA-C
1 AAGGGTATTTTTGTAATTTTTCAAATC
* * ** *
60298275 TAATGGTATTTCTAAAATTTTTGAAAGTC
1 -AAGGGTATTTTTGTAATTTTTCAAA-TC
* * *
60298304 AAGGGTA-TTCTATAATTTGT-AAATC
1 AAGGGTATTTTTGTAATTTTTCAAATC
* *
60298329 AGGGGTATTTTTGTAATTTTTCAAATT
1 AAGGGTATTTTTGTAATTTTTCAAATC
* * * *
60298356 AAGGGTATTTTGGTAATTTTACAAGTT
1 AAGGGTATTTTTGTAATTTTTCAAATC
* ** * *
60298383 GAGGGTATTTGAGTAATTTTACAAGTC
1 AAGGGTATTTTTGTAATTTTTCAAATC
* * *
60298410 AAGGGTA-TTATGATAATTTTACAAATT
1 AAGGGTATTTTTG-TAATTTTTCAAATC
* * *
60298437 AGGGGTATTTTGGTAATTTTTACAAACC
1 AAGGGTATTTTTGTAATTTTT-CAAATC
* * * * *
60298465 AGGGGTATTTTGGCAATTTTGCTAATC
1 AAGGGTATTTTTGTAATTTTTCAAATC
* * *
60298492 GAGGGTATTTTGGTAATTTTGT-AAACC
1 AAGGGTATTTTTGTAATTTT-TCAAATC
** *
60298519 AAGGGTA-TTCAGTAATTTTGT-AAACC
1 AAGGGTATTTTTGTAATTTT-TCAAATC
*
60298545 AAGGGTATTTTAGTAATT
1 AAGGGTATTTTTGTAATT
60298563 CTACCATACA
Statistics
Matches: 232, Mismatches: 46, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
25 8 0.03
26 40 0.17
27 151 0.65
28 32 0.14
29 1 0.00
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTTTGTAATTTTTCAAATC
Found at i:60298399 original size:54 final size:53
Alignment explanation
Indices: 60298331--60298527 Score: 202
Period size: 54 Copynumber: 3.6 Consensus size: 53
60298321 TGTAAATCAG
* *
60298331 GGGTATTTTTGTAATTTTTCAAATTAAGGGTATTTTGGTAATTTTACAAGTTGA
1 GGGTATTTTGGTAATTTTTCAAATCAAGGGTATTTTGGTAATTTTACAA-TTGA
* * * *
60298385 GGGTA-TTTGAGTAATTTTACAAGTCAAGGGTATTATGATAATTTTACAAATT-A
1 GGGTATTTTG-GTAATTTTTCAAATCAAGGGTATTTTGGTAATTTTAC-AATTGA
* * * * *
60298438 GGGGTATTTTGGTAATTTTTACAAACCAGGGGTATTTTGGCAATTTTGCTAATCGA
1 -GGGTATTTTGGTAATTTTT-CAAATCAAGGGTATTTTGGTAATTTTAC-AATTGA
*
60298494 GGGTATTTTGGTAATTTTGT-AAACCAAGGGTATT
1 GGGTATTTTGGTAATTTT-TCAAATCAAGGGTATT
60298528 CAGTAATTTT
Statistics
Matches: 119, Mismatches: 17, Indels: 14
0.79 0.11 0.09
Matches are distributed among these distances:
53 4 0.03
54 65 0.55
55 48 0.40
56 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTTCAAATCAAGGGTATTTTGGTAATTTTACAATTGA
Found at i:60298522 original size:109 final size:106
Alignment explanation
Indices: 60298303--60298562 Score: 267
Period size: 109 Copynumber: 2.4 Consensus size: 106
60298293 TTTTGAAAGT
* * **
60298303 CAAGGGTATTCTATAATTTGTAAATCAGGGGTATTTTTGTAATTTTTCAAATTAAGGGTATTTTG
1 CAAGGGTATTATATAATTTGTAAATCAGGGGTATTTTGGTAATTTTTCAAACCAAGGGTATTTTG
* * **
60298368 GTAATTTTACAAGTTGAGGGTATTTGAGTAATTTTACAAGT
66 GCAATTTTACAAGTCGAGGGTATTTGAGTAATTTTACAAAC
* *
60298409 CAAGGGTATTATGATAATTT-TACAAATTAGGGGTATTTTGGTAATTTTTACAAACCAGGGGTAT
1 CAAGGGTATTAT-ATAATTTGT--AAATCAGGGGTATTTTGGTAATTTTT-CAAACCAAGGGTAT
* **
60298473 TTTGGCAATTTTGCTAA-TCGAGGGTATTTTG-GTAATTTTGTAAAC
62 TTTGGCAATTTTAC-AAGTCGAGGGTA-TTTGAGTAATTTTACAAAC
* * * *
60298518 CAAGGGTATTCAGTA-ATTTTGTAAACCAAGGGTATTTTAGTAATT
1 CAAGGGTATT-A-TATAATTTGTAAATCAGGGGTATTTTGGTAATT
60298563 CTACCATACA
Statistics
Matches: 127, Mismatches: 18, Indels: 16
0.79 0.11 0.10
Matches are distributed among these distances:
106 12 0.09
107 7 0.06
108 43 0.34
109 55 0.43
110 9 0.07
111 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.41
Consensus pattern (106 bp):
CAAGGGTATTATATAATTTGTAAATCAGGGGTATTTTGGTAATTTTTCAAACCAAGGGTATTTTG
GCAATTTTACAAGTCGAGGGTATTTGAGTAATTTTACAAAC
Found at i:60298652 original size:54 final size:54
Alignment explanation
Indices: 60298551--60298653 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 54
60298541 AACCAAGGGT
* ** *
60298551 ATTTTAGTAATTCTACCATACAGGGGCATTTCAGTAATTCTATCCTACAGGAGC
1 ATTTCAGTAATTCTACCATACAGGGGCATTTCAGTAATAATAGCCTACAGGAGC
* **
60298605 ATTTCAGTAATTCTACCCTACAGGGGTGTTTCAGTAATAATAGCCTACA
1 ATTTCAGTAATTCTACCATACAGGGGCATTTCAGTAATAATAGCCTACA
60298654 AATATGAGTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (54 bp):
ATTTCAGTAATTCTACCATACAGGGGCATTTCAGTAATAATAGCCTACAGGAGC
Found at i:60298653 original size:27 final size:27
Alignment explanation
Indices: 60298551--60298642 Score: 130
Period size: 27 Copynumber: 3.4 Consensus size: 27
60298541 AACCAAGGGT
* *
60298551 ATTTTAGTAATTCTACCATACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
60298578 ATTTCAGTAATTCTATCCTACAGGAGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
60298605 ATTTCAGTAATTCTACCCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
60298632 GTTTCAGTAAT
1 ATTTCAGTAAT
60298643 AATAGCCTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:60300925 original size:40 final size:38
Alignment explanation
Indices: 60300881--60301145 Score: 250
Period size: 39 Copynumber: 6.8 Consensus size: 38
60300871 AATCACCACT
*
60300881 ACAAAG-CTTGCGGGACTTTAAGCCCAGATATAATACCAGC
1 ACAAAGCCTT-CGGGAC-TT-AGCCCGGATATAATACCAGC
* *
60300921 ACAAAGCCTGCGGGGCTTTAGCCCGGATATAATACCAGC
1 ACAAAGCCTTCGGGAC-TTAGCCCGGATATAATACCAGC
* * *
60300960 ATGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGC
1 A-CAAAGCCTTCGGGACTTAGCCCGGATATAATACCAGC
* *
60300999 ACAAATGCCTTCGGAACTTAGCCCGGATATAATACCAGT
1 ACAAA-GCCTTCGGGACTTAGCCCGGATATAATACCAGC
*** * *
60301038 ACGAATTTCTTCAGG---TAGCCTGGATATAATACCAGC
1 AC-AAAGCCTTCGGGACTTAGCCCGGATATAATACCAGC
** * *
60301074 ACGAATTCCTTCGGGACTTAGCCCGGATATAACACTAGC
1 AC-AAAGCCTTCGGGACTTAGCCCGGATATAATACCAGC
* *
60301113 AGAAATGCCTTCGGGACTTAACCCGGATATAAT
1 ACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
60301146 TCTCCATTAT
Statistics
Matches: 187, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
36 32 0.17
38 4 0.02
39 122 0.65
40 27 0.14
41 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
ACAAAGCCTTCGGGACTTAGCCCGGATATAATACCAGC
Found at i:60301085 original size:114 final size:114
Alignment explanation
Indices: 60300939--60301145 Score: 351
Period size: 114 Copynumber: 1.8 Consensus size: 114
60300929 TGCGGGGCTT
*
60300939 TAGCCCGGATATAATACCAGCATGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
60301004 TGCCTTCGGAACTTAGCCCGGATATAATACCAGTACGAATTTCTTCAGG
66 TGCCTTCGGAACTTAACCCGGATATAATACCAGTACGAATTTCTTCAGG
* * * *
60301053 TAGCCTGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAACACTAGCAGAAA
1 TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
*
60301118 TGCCTTCGGGACTTAACCCGGATATAAT
66 TGCCTTCGGAACTTAACCCGGATATAAT
60301146 TCTCCATTAT
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 86 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (114 bp):
TAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
TGCCTTCGGAACTTAACCCGGATATAATACCAGTACGAATTTCTTCAGG
Found at i:60306826 original size:13 final size:13
Alignment explanation
Indices: 60306810--60306842 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
60306800 ATTAATTAAA
*
60306810 TTAGTTAATTAGT
1 TTAGATAATTAGT
60306823 TTAGATAATTAGT
1 TTAGATAATTAGT
60306836 TTA-ATAA
1 TTAGATAA
60306843 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Done.